-
1
-
-
77951765345
-
Subtle variations in Pten dose determine cancer susceptibility
-
A. Alimonti, A. Carracedo, J.G. Clohessy, L.C. Trotman, C. Nardella, A. Egia, L. Salmena, K. Sampieri, W.J. Haveman, and E. Brogi Subtle variations in Pten dose determine cancer susceptibility Nat. Genet. 42 2010 454 458
-
(2010)
Nat. Genet.
, vol.42
, pp. 454-458
-
-
Alimonti, A.1
Carracedo, A.2
Clohessy, J.G.3
Trotman, L.C.4
Nardella, C.5
Egia, A.6
Salmena, L.7
Sampieri, K.8
Haveman, W.J.9
Brogi, E.10
-
2
-
-
0025183708
-
Basic local alignment search tool
-
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
77951474125
-
Target mRNA abundance dilutes microRNA and siRNA activity
-
A. Arvey, E. Larsson, C. Sander, C.S. Leslie, and D.S. Marks Target mRNA abundance dilutes microRNA and siRNA activity Mol. Syst. Biol. 6 2010 363
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 363
-
-
Arvey, A.1
Larsson, E.2
Sander, C.3
Leslie, C.S.4
Marks, D.S.5
-
4
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
D.P. Bartel MicroRNAs: target recognition and regulatory functions Cell 136 2009 215 233
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
5
-
-
1942435249
-
Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
-
D.P. Bartel, and C.Z. Chen Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs Nat. Rev. Genet. 5 2004 396 400 (Pubitemid 38529411)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.-Z.2
-
7
-
-
77953798171
-
Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA
-
D. Cazalla, T. Yario, and J.A. Steitz Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA Science 328 2010 1563 1566
-
(2010)
Science
, vol.328
, pp. 1563-1566
-
-
Cazalla, D.1
Yario, T.2
Steitz, J.A.3
-
8
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
this issue
-
M. Cesana, D. Cacchiarelli, I. Legnini, T. Santini, O. Sthandier, M. Chinappi, A. Tramontano, and I. Bozzoni A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA Cell 147 2011 358 369 this issue
-
(2011)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
Santini, T.4
Sthandier, O.5
Chinappi, M.6
Tramontano, A.7
Bozzoni, I.8
-
9
-
-
33644853907
-
The colorectal microRNAome
-
DOI 10.1073/pnas.0511155103
-
J.M. Cummins, Y. He, R.J. Leary, R. Pagliarini, L.A. Diaz Jr.; T. Sjoblom, O. Barad, Z. Bentwich, A.E. Szafranska, and E. Labourier The colorectal microRNAome Proc. Natl. Acad. Sci. USA 103 2006 3687 3692 (Pubitemid 43376616)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.10
, pp. 3687-3692
-
-
Cummins, J.M.1
He, Y.2
Leary, R.J.3
Pagliarini, R.4
Diaz Jr., L.A.5
Sjoblom, T.6
Barad, O.7
Bentwich, Z.8
Szafranska, A.E.9
Labourier, E.10
Raymond, C.K.11
Roberts, B.S.12
Juhl, H.13
Kinzler, K.W.14
Vogelstein, B.15
Velculescu, V.E.16
-
11
-
-
50849141708
-
MirWIP: MicroRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts
-
M. Hammell, D. Long, L. Zhang, A. Lee, C.S. Carmack, M. Han, Y. Ding, and V. Ambros mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts Nat. Methods 5 2008 813 819
-
(2008)
Nat. Methods
, vol.5
, pp. 813-819
-
-
Hammell, M.1
Long, D.2
Zhang, L.3
Lee, A.4
Carmack, C.S.5
Han, M.6
Ding, Y.7
Ambros, V.8
-
12
-
-
79953038262
-
PTEN loss in the continuum of common cancers, rare syndromes and mouse models
-
M.C. Hollander, G.M. Blumenthal, and P.A. Dennis PTEN loss in the continuum of common cancers, rare syndromes and mouse models Nat. Rev. Cancer 11 2011 289 301
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 289-301
-
-
Hollander, M.C.1
Blumenthal, G.M.2
Dennis, P.A.3
-
13
-
-
66149173789
-
The PTEN-regulating microRNA miR-26a is amplified in high-grade glioma and facilitates gliomagenesis in vivo
-
J.T. Huse, C. Brennan, D. Hambardzumyan, B. Wee, J. Pena, S.H. Rouhanifard, C. Sohn-Lee, C. Ie Sage, R. Agami, and T. Tuschl The PTEN-regulating microRNA miR-26a is amplified in high-grade glioma and facilitates gliomagenesis in vivo Genes Dev. 23 2009 1327 1337
-
(2009)
Genes Dev.
, vol.23
, pp. 1327-1337
-
-
Huse, J.T.1
Brennan, C.2
Hambardzumyan, D.3
Wee, B.4
Pena, J.5
Rouhanifard, S.H.6
Sohn-Lee, C.7
Ie Sage, C.8
Agami, R.9
Tuschl, T.10
-
14
-
-
79955598536
-
Expression of CD44 3′-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis
-
Z. Jeyapalan, Z. Deng, T. Shatseva, L. Fang, C. He, and B.B. Yang Expression of CD44 3′-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis Nucleic Acids Res. 39 2011 3026 3041
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3026-3041
-
-
Jeyapalan, Z.1
Deng, Z.2
Shatseva, T.3
Fang, L.4
He, C.5
Yang, B.B.6
-
15
-
-
80054681545
-
In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
-
this issue
-
F.A. Karreth, Y. Tay, D. Perna, U. Ala, S.M. Tan, A.G. Rust, G. DeNicola, K.A. Webster, D. Weiss, and P.A. Perez-Mancera In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma Cell 147 2011 382 395 this issue
-
(2011)
Cell
, vol.147
, pp. 382-395
-
-
Karreth, F.A.1
Tay, Y.2
Perna, D.3
Ala, U.4
Tan, S.M.5
Rust, A.G.6
Denicola, G.7
Webster, K.A.8
Weiss, D.9
Perez-Mancera, P.A.10
-
16
-
-
33845275018
-
RIP-Chip: The isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts
-
J.D. Keene, J.M. Komisarow, and M.B. Friedersdorf RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts Nat. Protoc. 1 2006 302 307
-
(2006)
Nat. Protoc.
, vol.1
, pp. 302-307
-
-
Keene, J.D.1
Komisarow, J.M.2
Friedersdorf, M.B.3
-
17
-
-
68149165414
-
HuR recruits let-7/RISC to repress c-Myc expression
-
H.H. Kim, Y. Kuwano, S. Srikantan, E.K. Lee, J.L. Martindale, and M. Gorospe HuR recruits let-7/RISC to repress c-Myc expression Genes Dev. 23 2009 1743 1748
-
(2009)
Genes Dev.
, vol.23
, pp. 1743-1748
-
-
Kim, H.H.1
Kuwano, Y.2
Srikantan, S.3
Lee, E.K.4
Martindale, J.L.5
Gorospe, M.6
-
18
-
-
43049108795
-
Emerging novel functions of RNAs, and binary phenotype?
-
M. Kloc Emerging novel functions of RNAs, and binary phenotype? Dev. Biol. 317 2008 401 404
-
(2008)
Dev. Biol.
, vol.317
, pp. 401-404
-
-
Kloc, M.1
-
19
-
-
50149117751
-
Chromosome copy number analysis in screening for prognosis-related genomic regions in colorectal carcinoma
-
K. Kurashina, Y. Yamashita, T. Ueno, K. Koinuma, J. Ohashi, H. Horie, Y. Miyakura, T. Hamada, H. Haruta, and H. Hatanaka Chromosome copy number analysis in screening for prognosis-related genomic regions in colorectal carcinoma Cancer Sci. 99 2008 1835 1840
-
(2008)
Cancer Sci.
, vol.99
, pp. 1835-1840
-
-
Kurashina, K.1
Yamashita, Y.2
Ueno, T.3
Koinuma, K.4
Ohashi, J.5
Horie, H.6
Miyakura, Y.7
Hamada, T.8
Haruta, H.9
Hatanaka, H.10
-
21
-
-
79953673245
-
Expression of distinct RNAs from 3′ untranslated regions
-
T.R. Mercer, D. Wilhelm, M.E. Dinger, G. Solda, D.J. Korbie, E.A. Glazov, V. Truong, M. Schwenke, C. Simons, and K.I. Matthaei Expression of distinct RNAs from 3′ untranslated regions Nucleic Acids Res. 39 2011 2393 2403
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2393-2403
-
-
Mercer, T.R.1
Wilhelm, D.2
Dinger, M.E.3
Solda, G.4
Korbie, D.J.5
Glazov, E.A.6
Truong, V.7
Schwenke, M.8
Simons, C.9
Matthaei, K.I.10
-
22
-
-
33748587841
-
A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes
-
DOI 10.1016/j.cell.2006.07.031, PII S0092867406010993
-
K.C. Miranda, T. Huynh, Y. Tay, Y.S. Ang, W.L. Tam, A.M. Thomson, B. Lim, and I. Rigoutsos A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes Cell 126 2006 1203 1217 (Pubitemid 44380294)
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
Ang, Y.-S.4
Tam, W.-L.5
Thomson, A.M.6
Lim, B.7
Rigoutsos, I.8
-
23
-
-
72849125619
-
Genetic dissection of the miR-17∼92 cluster of microRNAs in Myc-induced B-cell lymphomas
-
P. Mu, Y.C. Han, D. Betel, E. Yao, M. Squatrito, P. Ogrodowski, E. de Stanchina, A. D'Andrea, C. Sander, and A. Ventura Genetic dissection of the miR-17∼92 cluster of microRNAs in Myc-induced B-cell lymphomas Genes Dev. 23 2009 2806 2811
-
(2009)
Genes Dev.
, vol.23
, pp. 2806-2811
-
-
Mu, P.1
Han, Y.C.2
Betel, D.3
Yao, E.4
Squatrito, M.5
Ogrodowski, P.6
De Stanchina, E.7
D'Andrea, A.8
Sander, C.9
Ventura, A.10
-
24
-
-
72849120988
-
MiR-19 is a key oncogenic component of mir-17-92
-
V. Olive, M.J. Bennett, J.C. Walker, C. Ma, I. Jiang, C. Cordon-Cardo, Q.J. Li, S.W. Lowe, G.J. Hannon, and L. He miR-19 is a key oncogenic component of mir-17-92 Genes Dev. 23 2009 2839 2849
-
(2009)
Genes Dev.
, vol.23
, pp. 2839-2849
-
-
Olive, V.1
Bennett, M.J.2
Walker, J.C.3
Ma, C.4
Jiang, I.5
Cordon-Cardo, C.6
Li, Q.J.7
Lowe, S.W.8
Hannon, G.J.9
He, L.10
-
25
-
-
80054818700
-
An atlas of tissue-specific conserved coexpression for functional annotation and disease gene prediction
-
10.1038/ehg.2011.96 Published online June 8, 2011
-
R.M. Piro, U. Ala, I. Molineris, E. Grassi, C. Bracco, G.P. Perego, P. Provero, and F. Di Cunto An atlas of tissue-specific conserved coexpression for functional annotation and disease gene prediction Eur. J. Hum. Genet. 2011 10.1038/ehg.2011.96 Published online June 8, 2011
-
(2011)
Eur. J. Hum. Genet.
-
-
Piro, R.M.1
Ala, U.2
Molineris, I.3
Grassi, E.4
Bracco, C.5
Perego, G.P.6
Provero, P.7
Di Cunto, F.8
-
26
-
-
77953948708
-
Identification of the miR-106b∼25 microRNA cluster as a proto-oncogenic PTEN-targeting intron that cooperates with its host gene MCM7 in transformation
-
L. Poliseno, L. Salmena, L. Riccardi, A. Fornari, M.S. Song, R.M. Hobbs, P. Sportoletti, S. Varmeh, A. Egia, and G. Fedele Identification of the miR-106b∼25 microRNA cluster as a proto-oncogenic PTEN-targeting intron that cooperates with its host gene MCM7 in transformation Sci. Signal. 3 2010 ra29
-
(2010)
Sci. Signal.
, vol.3
, pp. 29
-
-
Poliseno, L.1
Salmena, L.2
Riccardi, L.3
Fornari, A.4
Song, M.S.5
Hobbs, R.M.6
Sportoletti, P.7
Varmeh, S.8
Egia, A.9
Fedele, G.10
-
27
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
L. Poliseno, L. Salmena, J. Zhang, B. Carver, W.J. Haveman, and P.P. Pandolfi A coding-independent function of gene and pseudogene mRNAs regulates tumour biology Nature 465 2010 1033 1038
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
28
-
-
55049136297
-
FFAT rescues VAPA-mediated inhibition of ER-to-Golgi transport and VAPB-mediated ER aggregation
-
D.C. Prosser, D. Tran, P.Y. Gougeon, C. Verly, and J.K. Ngsee FFAT rescues VAPA-mediated inhibition of ER-to-Golgi transport and VAPB-mediated ER aggregation J. Cell Sci. 121 2008 3052 3061
-
(2008)
J. Cell Sci.
, vol.121
, pp. 3052-3061
-
-
Prosser, D.C.1
Tran, D.2
Gougeon, P.Y.3
Verly, C.4
Ngsee, J.K.5
-
29
-
-
66249106716
-
Predicting microRNA targets and functions: Traps for the unwary
-
W. Ritchie, S. Flamant, and J.E. Rasko Predicting microRNA targets and functions: traps for the unwary Nat. Methods 6 2009 397 398
-
(2009)
Nat. Methods
, vol.6
, pp. 397-398
-
-
Ritchie, W.1
Flamant, S.2
Rasko, J.E.3
-
30
-
-
79961170994
-
A ceRNA hypothesis: The Rosetta Stone of a hidden RNA language?
-
L. Salmena, L. Poliseno, Y. Tay, L. Kats, and P.P. Pandolfi A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146 2011 353 358
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
31
-
-
67349123973
-
Redefining microRNA targets
-
H. Seitz Redefining microRNA targets Curr. Biol. 19 2009 870 873
-
(2009)
Curr. Biol.
, vol.19
, pp. 870-873
-
-
Seitz, H.1
-
32
-
-
80054689794
-
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
this issue
-
P. Sumazin, X. Yang, H.-S. Chiu, W.-J. Chung, A. Iyer, D. Llobet-Navas, P. Rajbhandari, M. Bansal, P. Guarnieri, and J. Silva An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma Cell 147 2011 370 381 this issue
-
(2011)
Cell
, vol.147
, pp. 370-381
-
-
Sumazin, P.1
Yang, X.2
Chiu, H.-S.3
Chung, W.-J.4
Iyer, A.5
Llobet-Navas, D.6
Rajbhandari, P.7
Bansal, M.8
Guarnieri, P.9
Silva, J.10
-
33
-
-
54549108798
-
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
-
Y. Tay, J. Zhang, A.M. Thomson, B. Lim, and I. Rigoutsos MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation Nature 455 2008 1124 1128
-
(2008)
Nature
, vol.455
, pp. 1124-1128
-
-
Tay, Y.1
Zhang, J.2
Thomson, A.M.3
Lim, B.4
Rigoutsos, I.5
-
34
-
-
77954255681
-
Integrative genomic profiling of human prostate cancer
-
B.S. Taylor, N. Schultz, H. Hieronymus, A. Gopalan, Y. Xiao, B.S. Carver, V.K. Arora, P. Kaushik, E. Cerami, and B. Reva Integrative genomic profiling of human prostate cancer Cancer Cell 18 2010 11 22
-
(2010)
Cancer Cell
, vol.18
, pp. 11-22
-
-
Taylor, B.S.1
Schultz, N.2
Hieronymus, H.3
Gopalan, A.4
Xiao, Y.5
Carver, B.S.6
Arora, V.K.7
Kaushik, P.8
Cerami, E.9
Reva, B.10
-
35
-
-
4243110417
-
Pten dose dictates cancer progression in the prostate
-
L.C. Trotman, M. Niki, Z.A. Dotan, J.A. Koutcher, A. Di Cristofano, A. Xiao, A.S. Khoo, P. Roy-Burman, N.M. Greenberg, and T. Van Dyke Pten dose dictates cancer progression in the prostate PLoS Biol. 1 2003 E59
-
(2003)
PLoS Biol.
, vol.1
, pp. 59
-
-
Trotman, L.C.1
Niki, M.2
Dotan, Z.A.3
Koutcher, J.A.4
Di Cristofano, A.5
Xiao, A.6
Khoo, A.S.7
Roy-Burman, P.8
Greenberg, N.M.9
Van Dyke, T.10
-
36
-
-
77955414733
-
Crystal structure of the human CNOT6L nuclease domain reveals strict poly(A) substrate specificity
-
H. Wang, M. Morita, X. Yang, T. Suzuku, W. Yang, J. Wang, K. Ito, Q. Wang, C. Zhao, and M. Bartlam Crystal structure of the human CNOT6L nuclease domain reveals strict poly(A) substrate specificity EMBO J. 29 2010 2566 2576
-
(2010)
EMBO J.
, vol.29
, pp. 2566-2576
-
-
Wang, H.1
Morita, M.2
Yang, X.3
Suzuku, T.4
Yang, W.5
Wang, J.6
Ito, K.7
Wang, Q.8
Zhao, C.9
Bartlam, M.10
-
37
-
-
0037119364
-
Vesicle-associated membrane protein-associated protein-A (VAP-A) interacts with the oxysterol-binding protein to modify export from the endoplasmic reticulum
-
J.P. Wyles, C.R. McMaster, and N.D. Ridgway Vesicle-associated membrane protein-associated protein-A (VAP-A) interacts with the oxysterol-binding protein to modify export from the endoplasmic reticulum J. Biol. Chem. 277 2002 29908 29918
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 29908-29918
-
-
Wyles, J.P.1
McMaster, C.R.2
Ridgway, N.D.3
-
38
-
-
39749163245
-
Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes
-
DOI 10.1038/ni1575, PII NI1575
-
C. Xiao, L. Srinivasan, D.P. Calado, H.C. Patterson, B. Zhang, J. Wang, J.M. Henderson, J.L. Kutok, and K. Rajewsky Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes Nat. Immunol. 9 2008 405 414 (Pubitemid 351405110)
-
(2008)
Nature Immunology
, vol.9
, Issue.4
, pp. 405-414
-
-
Xiao, C.1
Srinivasan, L.2
Calado, D.P.3
Patterson, H.C.4
Zhang, B.5
Wang, J.6
Henderson, J.M.7
Kutok, J.L.8
Rajewsky, K.9
|