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Volumn 14, Issue 5, 2008, Pages 853-861

Experimental validation of the importance of seed complement frequency to siRNA specificity

Author keywords

MicroRNAs (miRNAs); RNA induced silencing complex (RISC); RNA interference (RNAi); Seed complement frequencies (SCFs); Small interfering RNAs (siRNA)

Indexed keywords

GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE (NADP); NUCLEOTIDE; SMALL INTERFERING RNA; TRANSCRIPTOME; MESSENGER RNA; RNA INDUCED SILENCING COMPLEX;

EID: 42449152837     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.704708     Document Type: Article
Times cited : (114)

References (32)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.1
  • 2
    • 28544446014 scopus 로고    scopus 로고
    • How will RNAi facilitate drug development? Sci. STKE
    • pe39. doi: 10.1126/stke.2952005pe39
    • Bartz, S. and Jackson, A.L. 2005. How will RNAi facilitate drug development? Sci. STKE 2005: pe39. doi: 10.1126/stke.2952005pe39.
    • (2005)
    • Bartz, S.1    Jackson, A.L.2
  • 4
    • 18044377963 scopus 로고    scopus 로고
    • Principles of microRNA-target recognition
    • doi: 10.1371/journal.pbio.0030085
    • Brennecke, J., Stark, A., Russell, R.B., and Cohen, S.M. 2005. Principles of microRNA-target recognition. PLoS Biol. 3: e85. doi: 10.1371/journal.pbio.0030085.
    • (2005) PLoS Biol , vol.3
    • Brennecke, J.1    Stark, A.2    Russell, R.B.3    Cohen, S.M.4
  • 5
    • 27344458889 scopus 로고    scopus 로고
    • Exploring the sounds of silence: RNAi-mediated gene silencing for target identification and validation
    • Chatterjee-Kishore, M. and Miller, C.P. 2005. Exploring the sounds of silence: RNAi-mediated gene silencing for target identification and validation. Drug Discov. Today 10: 1559-1565.
    • (2005) Drug Discov. Today , vol.10 , pp. 1559-1565
    • Chatterjee-Kishore, M.1    Miller, C.P.2
  • 7
    • 33644849221 scopus 로고    scopus 로고
    • A small interfering RNA screen for modulators of tumor cell motility identifies MAP4K4 as a promigratory kinase
    • Collins, C.S., Hong, J., Sapinoso, L., Zhou, Y., Liu, Z., Micklash, K., Schultz, P.G., and Hampton, G.M. 2006. A small interfering RNA screen for modulators of tumor cell motility identifies MAP4K4 as a promigratory kinase. Proc. Natl. Acad. Sci. 103: 3775-3780.
    • (2006) Proc. Natl. Acad. Sci , vol.103 , pp. 3775-3780
    • Collins, C.S.1    Hong, J.2    Sapinoso, L.3    Zhou, Y.4    Liu, Z.5    Micklash, K.6    Schultz, P.G.7    Hampton, G.M.8
  • 8
    • 1642374097 scopus 로고    scopus 로고
    • Specificity of microRNA target selection in translational repression
    • Doench, J.G. and Sharp, P.A. 2004. Specificity of microRNA target selection in translational repression. Genes & Dev. 18: 504-511.
    • (2004) Genes & Dev , vol.18 , pp. 504-511
    • Doench, J.G.1    Sharp, P.A.2
  • 10
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K., and Tuschl, T. 2001. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494-498.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 13
    • 7944234229 scopus 로고    scopus 로고
    • RNA oligonucleotide synthesis via 5′-silyl-2′-orthoester chemistry
    • ed. P. Herdewijn, pp, Humana Press, Totowa, NJ
    • Hartsel, S.A., Kitchen, D., Scaringe, S.A., and Marshall, W.S. 2004. RNA oligonucleotide synthesis via 5′-silyl-2′-orthoester chemistry. In Methods in molecular biology (ed. P. Herdewijn), pp. 33-49. Humana Press, Totowa, NJ.
    • (2004) Methods in molecular biology , pp. 33-49
    • Hartsel, S.A.1    Kitchen, D.2    Scaringe, S.A.3    Marshall, W.S.4
  • 16
    • 33745612464 scopus 로고    scopus 로고
    • Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
    • Jackson, A.L., Burchard, J., Schelter, J., Chau, B.N., Cleary, M., Lim, L., and Linsley, P.S. 2006b. Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity. RNA 12: 1179-1187.
    • (2006) RNA , vol.12 , pp. 1179-1187
    • Jackson, A.L.1    Burchard, J.2    Schelter, J.3    Chau, B.N.4    Cleary, M.5    Lim, L.6    Linsley, P.S.7
  • 18
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova, A., Reynolds, A., and Jayasena, S. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216.
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.3
  • 21
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis, B., Burge, C., and Bartel, D. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.1    Burge, C.2    Bartel, D.3
  • 23
    • 23344438420 scopus 로고    scopus 로고
    • siRNA-mediated off-target gene silencing triggered by a 7 nt complementation
    • doi: 10.1093/nar/gki762
    • Lin, X., Ruan, X., Anderson, M.G., McDowell, J.A., Kroeger, P.E., Fesik, S.W., and Shen, Y. 2005. siRNA-mediated off-target gene silencing triggered by a 7 nt complementation. Nucleic Acids Res. 33: 4527-4535. doi: 10.1093/nar/gki762.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4527-4535
    • Lin, X.1    Ruan, X.2    Anderson, M.G.3    McDowell, J.A.4    Kroeger, P.E.5    Fesik, S.W.6    Shen, Y.7
  • 25
    • 22144478256 scopus 로고    scopus 로고
    • MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
    • Liu, J., Valencia-Sanchez, M.A., Hannon, G.J., and Parker, R. 2005b. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat. Cell Biol. 7: 719-723.
    • (2005) Nat. Cell Biol , vol.7 , pp. 719-723
    • Liu, J.1    Valencia-Sanchez, M.A.2    Hannon, G.J.3    Parker, R.4
  • 28
    • 20444427566 scopus 로고    scopus 로고
    • Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies
    • Sen, G.L. and Blau, H.M. 2005. Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies. Nat. Cell Biol. 7: 633-636.
    • (2005) Nat. Cell Biol , vol.7 , pp. 633-636
    • Sen, G.L.1    Blau, H.M.2
  • 29
    • 28944439309 scopus 로고    scopus 로고
    • Animal microRNAs confer robustness to gene expression and have a significant impact on 39 UTR evolution
    • Stark, A., Brennecke, J., Bushati, N., Russell, R., and Cohen, S. 2005. Animal microRNAs confer robustness to gene expression and have a significant impact on 39 UTR evolution. Cell 123: 1133-1146.
    • (2005) Cell , vol.123 , pp. 1133-1146
    • Stark, A.1    Brennecke, J.2    Bushati, N.3    Russell, R.4    Cohen, S.5
  • 30
    • 33644768174 scopus 로고    scopus 로고
    • Control of translation and mRNA degradation by miRNAs and siRNAs
    • Valencia-Sanchez, M.A., Liu, J., Hannon, G.J., and Parker, R. 2006. Control of translation and mRNA degradation by miRNAs and siRNAs. Genes & Dev. 20: 515-524.
    • (2006) Genes & Dev , vol.20 , pp. 515-524
    • Valencia-Sanchez, M.A.1    Liu, J.2    Hannon, G.J.3    Parker, R.4
  • 31
    • 15244358503 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
    • Xie, X., Lu, J., Kulbokas, E.J., Golub, T.R., Mootha, V., Lindblad-Toh, K., Lander, E.S., and Kellis, M. 2005. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434: 338-345.
    • (2005) Nature , vol.434 , pp. 338-345
    • Xie, X.1    Lu, J.2    Kulbokas, E.J.3    Golub, T.R.4    Mootha, V.5    Lindblad-Toh, K.6    Lander, E.S.7    Kellis, M.8
  • 32
    • 24644446398 scopus 로고    scopus 로고
    • Ribo-gnome: The big world of small RNAs
    • Zamore, P.D. and Haley, B. 2005. Ribo-gnome: The big world of small RNAs. Science 309: 1519-1524.
    • (2005) Science , vol.309 , pp. 1519-1524
    • Zamore, P.D.1    Haley, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.