-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.1
-
2
-
-
28544446014
-
How will RNAi facilitate drug development? Sci. STKE
-
pe39. doi: 10.1126/stke.2952005pe39
-
Bartz, S. and Jackson, A.L. 2005. How will RNAi facilitate drug development? Sci. STKE 2005: pe39. doi: 10.1126/stke.2952005pe39.
-
(2005)
-
-
Bartz, S.1
Jackson, A.L.2
-
3
-
-
33646188259
-
3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets
-
Birmingham, A., Anderson, E.M., Reynolds, A., Ilsley-Tyree, D., Leake, D., Fedorov, Y., Baskerville, S., Maksimova, E., Robinson, K., Karpilow, J., et al. 2006. 3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets. Nat. Methods 3: 199-204.
-
(2006)
Nat. Methods
, vol.3
, pp. 199-204
-
-
Birmingham, A.1
Anderson, E.M.2
Reynolds, A.3
Ilsley-Tyree, D.4
Leake, D.5
Fedorov, Y.6
Baskerville, S.7
Maksimova, E.8
Robinson, K.9
Karpilow, J.10
-
4
-
-
18044377963
-
Principles of microRNA-target recognition
-
doi: 10.1371/journal.pbio.0030085
-
Brennecke, J., Stark, A., Russell, R.B., and Cohen, S.M. 2005. Principles of microRNA-target recognition. PLoS Biol. 3: e85. doi: 10.1371/journal.pbio.0030085.
-
(2005)
PLoS Biol
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
5
-
-
27344458889
-
Exploring the sounds of silence: RNAi-mediated gene silencing for target identification and validation
-
Chatterjee-Kishore, M. and Miller, C.P. 2005. Exploring the sounds of silence: RNAi-mediated gene silencing for target identification and validation. Drug Discov. Today 10: 1559-1565.
-
(2005)
Drug Discov. Today
, vol.10
, pp. 1559-1565
-
-
Chatterjee-Kishore, M.1
Miller, C.P.2
-
6
-
-
0038798081
-
Genomewide view of gene silencing by small interfering RNAs
-
Chi, J.T., Chang, H.Y., Wang, N.N., Chang, D.S., Dunphy, N., and Brown, P.O. 2003. Genomewide view of gene silencing by small interfering RNAs. Proc. Natl. Acad. Sci. 100: 6343-6346.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 6343-6346
-
-
Chi, J.T.1
Chang, H.Y.2
Wang, N.N.3
Chang, D.S.4
Dunphy, N.5
Brown, P.O.6
-
7
-
-
33644849221
-
A small interfering RNA screen for modulators of tumor cell motility identifies MAP4K4 as a promigratory kinase
-
Collins, C.S., Hong, J., Sapinoso, L., Zhou, Y., Liu, Z., Micklash, K., Schultz, P.G., and Hampton, G.M. 2006. A small interfering RNA screen for modulators of tumor cell motility identifies MAP4K4 as a promigratory kinase. Proc. Natl. Acad. Sci. 103: 3775-3780.
-
(2006)
Proc. Natl. Acad. Sci
, vol.103
, pp. 3775-3780
-
-
Collins, C.S.1
Hong, J.2
Sapinoso, L.3
Zhou, Y.4
Liu, Z.5
Micklash, K.6
Schultz, P.G.7
Hampton, G.M.8
-
8
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
Doench, J.G. and Sharp, P.A. 2004. Specificity of microRNA target selection in translational repression. Genes & Dev. 18: 504-511.
-
(2004)
Genes & Dev
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
9
-
-
0037443089
-
siRNAs can function as miRNAs
-
Doench, J.G., Petersen, C.P., and Sharp, P.A. 2003. siRNAs can function as miRNAs. Genes & Dev. 17: 438-442.
-
(2003)
Genes & Dev
, vol.17
, pp. 438-442
-
-
Doench, J.G.1
Petersen, C.P.2
Sharp, P.A.3
-
10
-
-
0035942736
-
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
-
Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K., and Tuschl, T. 2001. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494-498.
-
(2001)
Nature
, vol.411
, pp. 494-498
-
-
Elbashir, S.M.1
Harborth, J.2
Lendeckel, W.3
Yalcin, A.4
Weber, K.5
Tuschl, T.6
-
11
-
-
29144505309
-
The widespread impact of mammalian microRNAs on mRNA repression and evolution
-
Farh, K.K.-H., Grimson, A., Jan, C., Lewis, B.P., Johnston, W.K., Lim, L.P., Burge, C.B., and Bartel, D.P. 2005. The widespread impact of mammalian microRNAs on mRNA repression and evolution. Science 310: 1817-1821.
-
(2005)
Science
, vol.310
, pp. 1817-1821
-
-
Farh, K.K.-H.1
Grimson, A.2
Jan, C.3
Lewis, B.P.4
Johnston, W.K.5
Lim, L.P.6
Burge, C.B.7
Bartel, D.P.8
-
12
-
-
33745608078
-
Off-target effects by siRNA can induce toxic phenotype
-
Fedorov, Y., Anderson, E.M., Birmingham, A., Reynolds, A., Karpilow, J., Robinson, K., Leake, D., Marshall, W.S., and Khvorova, A. 2006. Off-target effects by siRNA can induce toxic phenotype. RNA 12: 1188-1196.
-
(2006)
RNA
, vol.12
, pp. 1188-1196
-
-
Fedorov, Y.1
Anderson, E.M.2
Birmingham, A.3
Reynolds, A.4
Karpilow, J.5
Robinson, K.6
Leake, D.7
Marshall, W.S.8
Khvorova, A.9
-
13
-
-
7944234229
-
RNA oligonucleotide synthesis via 5′-silyl-2′-orthoester chemistry
-
ed. P. Herdewijn, pp, Humana Press, Totowa, NJ
-
Hartsel, S.A., Kitchen, D., Scaringe, S.A., and Marshall, W.S. 2004. RNA oligonucleotide synthesis via 5′-silyl-2′-orthoester chemistry. In Methods in molecular biology (ed. P. Herdewijn), pp. 33-49. Humana Press, Totowa, NJ.
-
(2004)
Methods in molecular biology
, pp. 33-49
-
-
Hartsel, S.A.1
Kitchen, D.2
Scaringe, S.A.3
Marshall, W.S.4
-
14
-
-
0037685280
-
Expression profiling reveals off-target gene regulation by RNAi
-
Jackson, A.L., Bartz, S.R., Schelter, J., Kobayashi, S.V., Burchard, J., Mao, M., Li, B., Cavet, G., and Linsley, P.S. 2003. Expression profiling reveals off-target gene regulation by RNAi. Nat. Biotechnol. 21: 635-637.
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 635-637
-
-
Jackson, A.L.1
Bartz, S.R.2
Schelter, J.3
Kobayashi, S.V.4
Burchard, J.5
Mao, M.6
Li, B.7
Cavet, G.8
Linsley, P.S.9
-
15
-
-
33745614074
-
Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing
-
Jackson, A.L., Burchard, J., Leake, D., Reynolds, A., Schelter, J., Guo, J., Johnson, J.M., Lim, L., Karpilow, J., Nichols, K., et al. 2006a. Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing. RNA 12: 1197-1205.
-
(2006)
RNA
, vol.12
, pp. 1197-1205
-
-
Jackson, A.L.1
Burchard, J.2
Leake, D.3
Reynolds, A.4
Schelter, J.5
Guo, J.6
Johnson, J.M.7
Lim, L.8
Karpilow, J.9
Nichols, K.10
-
16
-
-
33745612464
-
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
-
Jackson, A.L., Burchard, J., Schelter, J., Chau, B.N., Cleary, M., Lim, L., and Linsley, P.S. 2006b. Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity. RNA 12: 1179-1187.
-
(2006)
RNA
, vol.12
, pp. 1179-1187
-
-
Jackson, A.L.1
Burchard, J.2
Schelter, J.3
Chau, B.N.4
Cleary, M.5
Lim, L.6
Linsley, P.S.7
-
17
-
-
28544435974
-
Disruption of GW bodies impairs mammalian RNA interference
-
Jakymiw, A., Lian, S., Eystathioy, T., Li, S., Satoh, M., Hamel, J.C., Fritzler, M.J., and Chan, E.K. 2005. Disruption of GW bodies impairs mammalian RNA interference. Nat. Cell Biol. 7: 1267-1274.
-
(2005)
Nat. Cell Biol
, vol.7
, pp. 1267-1274
-
-
Jakymiw, A.1
Lian, S.2
Eystathioy, T.3
Li, S.4
Satoh, M.5
Hamel, J.C.6
Fritzler, M.J.7
Chan, E.K.8
-
18
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova, A., Reynolds, A., and Jayasena, S. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216.
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.3
-
19
-
-
34247873185
-
Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies
-
Kittler, R., Surendranath, V., Heninger, A.K., Slabicki, M., Theis, M., Putz, G., Franke, K., Caldareli, A., Grabner, H., Kozak, K., et al. 2007. Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies. Nat. Methods 4: 337-344.
-
(2007)
Nat. Methods
, vol.4
, pp. 337-344
-
-
Kittler, R.1
Surendranath, V.2
Heninger, A.K.3
Slabicki, M.4
Theis, M.5
Putz, G.6
Franke, K.7
Caldareli, A.8
Grabner, H.9
Kozak, K.10
-
20
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek, A., Grun, D., Poy, M., Wolf, R., Rosenberg, L., Epstein, E., MacMenamin, P., da Piedade, I., Gunsalus, K., Stoffel, M., et al. 2005. Combinatorial microRNA target predictions. Nat. Genet. 37: 495-500.
-
(2005)
Nat. Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.6
MacMenamin, P.7
da Piedade, I.8
Gunsalus, K.9
Stoffel, M.10
-
21
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B., Burge, C., and Bartel, D. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.1
Burge, C.2
Bartel, D.3
-
22
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim, L., Lau, N., Garrett-Engele, P., Grimson, A., Schelter, J., Castle, J., Bartel, D., Linsley, P., and Johnson, J. 2005. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.1
Lau, N.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.5
Castle, J.6
Bartel, D.7
Linsley, P.8
Johnson, J.9
-
23
-
-
23344438420
-
siRNA-mediated off-target gene silencing triggered by a 7 nt complementation
-
doi: 10.1093/nar/gki762
-
Lin, X., Ruan, X., Anderson, M.G., McDowell, J.A., Kroeger, P.E., Fesik, S.W., and Shen, Y. 2005. siRNA-mediated off-target gene silencing triggered by a 7 nt complementation. Nucleic Acids Res. 33: 4527-4535. doi: 10.1093/nar/gki762.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4527-4535
-
-
Lin, X.1
Ruan, X.2
Anderson, M.G.3
McDowell, J.A.4
Kroeger, P.E.5
Fesik, S.W.6
Shen, Y.7
-
24
-
-
28544431919
-
A role for the P-body component GW182 in microRNA function
-
Liu, J., Rivas, F.V., Wohlschlegel, J., Yates 3rd., J.R., Parker, R., and Hannon, G.J. 2005a. A role for the P-body component GW182 in microRNA function. Nat. Cell Biol. 7: 1161-1166.
-
(2005)
Nat. Cell Biol
, vol.7
, pp. 1161-1166
-
-
Liu, J.1
Rivas, F.V.2
Wohlschlegel, J.3
Yates 3rd, J.R.4
Parker, R.5
Hannon, G.J.6
-
25
-
-
22144478256
-
MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
-
Liu, J., Valencia-Sanchez, M.A., Hannon, G.J., and Parker, R. 2005b. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat. Cell Biol. 7: 719-723.
-
(2005)
Nat. Cell Biol
, vol.7
, pp. 719-723
-
-
Liu, J.1
Valencia-Sanchez, M.A.2
Hannon, G.J.3
Parker, R.4
-
26
-
-
33646057010
-
High-throughput RNAi screening by time-lapse imaging of live human cells
-
Neumann, B., Held, M., Liebel, U., Erfle, H., Rogers, P., Pepperkok, R., and Ellenberg, J. 2006. High-throughput RNAi screening by time-lapse imaging of live human cells. Nat. Methods 3: 385-390.
-
(2006)
Nat. Methods
, vol.3
, pp. 385-390
-
-
Neumann, B.1
Held, M.2
Liebel, U.3
Erfle, H.4
Rogers, P.5
Pepperkok, R.6
Ellenberg, J.7
-
27
-
-
0038121109
-
Specificity of short interfering RNA determined through gene expression signatures
-
Semizarov, D., Frost, L., Sarthy, A., Kroeger, P., Halbert, D.N., and Fesik, S.W. 2003. Specificity of short interfering RNA determined through gene expression signatures. Proc. Natl. Acad. Sci. 100: 6347-6352.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 6347-6352
-
-
Semizarov, D.1
Frost, L.2
Sarthy, A.3
Kroeger, P.4
Halbert, D.N.5
Fesik, S.W.6
-
28
-
-
20444427566
-
Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies
-
Sen, G.L. and Blau, H.M. 2005. Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies. Nat. Cell Biol. 7: 633-636.
-
(2005)
Nat. Cell Biol
, vol.7
, pp. 633-636
-
-
Sen, G.L.1
Blau, H.M.2
-
29
-
-
28944439309
-
Animal microRNAs confer robustness to gene expression and have a significant impact on 39 UTR evolution
-
Stark, A., Brennecke, J., Bushati, N., Russell, R., and Cohen, S. 2005. Animal microRNAs confer robustness to gene expression and have a significant impact on 39 UTR evolution. Cell 123: 1133-1146.
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.4
Cohen, S.5
-
30
-
-
33644768174
-
Control of translation and mRNA degradation by miRNAs and siRNAs
-
Valencia-Sanchez, M.A., Liu, J., Hannon, G.J., and Parker, R. 2006. Control of translation and mRNA degradation by miRNAs and siRNAs. Genes & Dev. 20: 515-524.
-
(2006)
Genes & Dev
, vol.20
, pp. 515-524
-
-
Valencia-Sanchez, M.A.1
Liu, J.2
Hannon, G.J.3
Parker, R.4
-
31
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie, X., Lu, J., Kulbokas, E.J., Golub, T.R., Mootha, V., Lindblad-Toh, K., Lander, E.S., and Kellis, M. 2005. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434: 338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
32
-
-
24644446398
-
Ribo-gnome: The big world of small RNAs
-
Zamore, P.D. and Haley, B. 2005. Ribo-gnome: The big world of small RNAs. Science 309: 1519-1524.
-
(2005)
Science
, vol.309
, pp. 1519-1524
-
-
Zamore, P.D.1
Haley, B.2
|