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Volumn 8, Issue 1, 2014, Pages

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer

Author keywords

Epigenetics; Networks analysis; Systems biology

Indexed keywords

LONG UNTRANSLATED RNA; MESSENGER RNA; MICRORNA;

EID: 84904272774     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-8-83     Document Type: Article
Times cited : (218)

References (62)
  • 1
    • 40649111338 scopus 로고    scopus 로고
    • Non-coding rnas, epigenetics and complexity
    • Costa FF. Non-coding rnas, epigenetics and complexity. Gene 2008, 410(1):9-17.
    • (2008) Gene , vol.410 , Issue.1 , pp. 9-17
    • Costa, F.F.1
  • 2
    • 65649092633 scopus 로고    scopus 로고
    • The genetic signatures of noncoding rnas
    • Mattick JS. The genetic signatures of noncoding rnas. Plos Genet 2009, 5(4):10-1371.
    • (2009) Plos Genet , vol.5 , Issue.4 , pp. 10-1371
    • Mattick, J.S.1
  • 3
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by micrornas: are the answers in sight?
    • Filipowicz W, Bhattacharyya SN, Sonenberg N.Mechanisms of post-transcriptional regulation by micrornas: are the answers in sight?. Nat Rev Genet 2008, 9(2):102-114.
    • (2008) Nat Rev Genet , vol.9 , Issue.2 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 4
    • 58249088751 scopus 로고    scopus 로고
    • Micrornas: target recognition and regulatory functions
    • Bartel DP.Micrornas: target recognition and regulatory functions. Cell 2009, 136(2):215-233.
    • (2009) Cell , vol.136 , Issue.2 , pp. 215-233
    • Bartel, D.P.1
  • 5
    • 60349120914 scopus 로고    scopus 로고
    • Long non-coding rnas: insights into functions
    • Mercer TR, Dinger ME, Mattick JS. Long non-coding rnas: insights into functions. Nat Rev Genet 2009, 10(3):155-159.
    • (2009) Nat Rev Genet , vol.10 , Issue.3 , pp. 155-159
    • Mercer, T.R.1    Dinger, M.E.2    Mattick, J.S.3
  • 6
    • 77952212771 scopus 로고    scopus 로고
    • Rna traffic control of chromatin complexes
    • Koziol MJ, Rinn JL.Rna traffic control of chromatin complexes. Curr Opin Genet Dev 2010, 20(2):142-148.
    • (2010) Curr Opin Genet Dev , vol.20 , Issue.2 , pp. 142-148
    • Koziol, M.J.1    Rinn, J.L.2
  • 7
    • 0027751663 scopus 로고
    • The c. elegans heterochronic gene lin-4 encodes small rnas with antisense complementarity to lin-14
    • Lee RC, Feinbaum RL, Ambros V. The c. elegans heterochronic gene lin-4 encodes small rnas with antisense complementarity to lin-14. Cell 1993, 75(5):843-854.
    • (1993) Cell , vol.75 , Issue.5 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 8
    • 0037418839 scopus 로고    scopus 로고
    • bantam encodes a developmentally regulated microrna that controls cell proliferation and regulates the proapoptotic gene hid in drosophila
    • Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM.bantam encodes a developmentally regulated microrna that controls cell proliferation and regulates the proapoptotic gene hid in drosophila. Cell 2003, 113(1):25-36.
    • (2003) Cell , vol.113 , Issue.1 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 12
    • 34047270440 scopus 로고    scopus 로고
    • Characterization of microrna expression levels and their biological correlates in human cancer cell lines
    • Gaur A, Jewell DA, Liang Y, Ridzon D, Moore JH, Chen C, Ambros VR, Israel MA. Characterization of microrna expression levels and their biological correlates in human cancer cell lines. Cancer Res 2007, 67(6):2456-2468.
    • (2007) Cancer Res , vol.67 , Issue.6 , pp. 2456-2468
    • Gaur, A.1    Jewell, D.A.2    Liang, Y.3    Ridzon, D.4    Moore, J.H.5    Chen, C.6    Ambros, V.R.7    Israel, M.A.8
  • 14
    • 35148886434 scopus 로고    scopus 로고
    • Tumour invasion and metastasis initiated by microrna-10b in breast cancer
    • Ma L, Teruya-Feldstein J, Weinberg RA. Tumour invasion and metastasis initiated by microrna-10b in breast cancer. Nature 2007, 449(7163):682-688.
    • (2007) Nature , vol.449 , Issue.7163 , pp. 682-688
    • Ma, L.1    Teruya-Feldstein, J.2    Weinberg, R.A.3
  • 18
    • 33744805399 scopus 로고    scopus 로고
    • Specific activation of microrna-127 with downregulation of the proto-oncogene bcl6 by chromatin-modifying drugs in human cancer cells
    • Saito Y, Liang G, Egger G, Friedman JM, Chuang JC, Coetzee GA, Jones PA.Specific activation of microrna-127 with downregulation of the proto-oncogene bcl6 by chromatin-modifying drugs in human cancer cells. Cancer Cell 2006, 9(6):435-443.
    • (2006) Cancer Cell , vol.9 , Issue.6 , pp. 435-443
    • Saito, Y.1    Liang, G.2    Egger, G.3    Friedman, J.M.4    Chuang, J.C.5    Coetzee, G.A.6    Jones, P.A.7
  • 21
    • 34548316982 scopus 로고    scopus 로고
    • Microrna sponges: competitive inhibitors of small rnas in mammalian cells
    • Ebert MS, Neilson JR, Sharp PA. Microrna sponges: competitive inhibitors of small rnas in mammalian cells. Nat Methods 2007, 4(9):721-726.
    • (2007) Nat Methods , vol.4 , Issue.9 , pp. 721-726
    • Ebert, M.S.1    Neilson, J.R.2    Sharp, P.A.3
  • 22
    • 77953957633 scopus 로고    scopus 로고
    • A coding-independent function of gene and pseudogene mrnas regulates tumour biology
    • Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP. A coding-independent function of gene and pseudogene mrnas regulates tumour biology. Nature 2010, 465(7301):1033-1038.
    • (2010) Nature , vol.465 , Issue.7301 , pp. 1033-1038
    • Poliseno, L.1    Salmena, L.2    Zhang, J.3    Carver, B.4    Haveman, W.J.5    Pandolfi, P.P.6
  • 26
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding rnas
    • Ponting CP, Oliver PL, Reik W.Evolution and functions of long noncoding rnas. Cell 2009, 136(4):629-641.
    • (2009) Cell , vol.136 , Issue.4 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 27
    • 79961170994 scopus 로고    scopus 로고
    • A cerna hypothesis: the rosetta stone of a hidden rna language?
    • Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. A cerna hypothesis: the rosetta stone of a hidden rna language?. Cell 2011, 146(3):353-358.
    • (2011) Cell , vol.146 , Issue.3 , pp. 353-358
    • Salmena, L.1    Poliseno, L.2    Tay, Y.3    Kats, L.4    Pandolfi, P.P.5
  • 31
    • 79953858658 scopus 로고    scopus 로고
    • No-nonsense functions for long noncoding rnas
    • Nagano T, Fraser P. No-nonsense functions for long noncoding rnas. Cell 2011, 145(2):178-181.
    • (2011) Cell , vol.145 , Issue.2 , pp. 178-181
    • Nagano, T.1    Fraser, P.2
  • 32
    • 47249091921 scopus 로고    scopus 로고
    • The mir-200 family inhibits epithelial-mesenchymal transition and cancer cell migration by direct targeting of e-cadherin transcriptional repressors zeb1 and zeb2
    • Korpal M, Lee ES, Hu G, Kang Y. The mir-200 family inhibits epithelial-mesenchymal transition and cancer cell migration by direct targeting of e-cadherin transcriptional repressors zeb1 and zeb2. J Biol Chem 2008, 283(22):14910-14914.
    • (2008) J Biol Chem , vol.283 , Issue.22 , pp. 14910-14914
    • Korpal, M.1    Lee, E.S.2    Hu, G.3    Kang, Y.4
  • 34
    • 84865973282 scopus 로고    scopus 로고
    • An integrated transcriptional regulatory circuit that reinforces the breast cancer stem cell state
    • Polytarchoua, C SK
    • Iliopoulos D, . Polytarchoua, C SK An integrated transcriptional regulatory circuit that reinforces the breast cancer stem cell state. PNAS 2012, 109(36):14470-14475. Polytarchoua, C SK.
    • (2012) PNAS , vol.109 , Issue.36 , pp. 14470-14475
    • Iliopoulos, D.1
  • 35
    • 84876557012 scopus 로고    scopus 로고
    • Reduced expression of mir-200 family members contributes to antiestrogen resistance in ly2 human breast cancer cells
    • Manavalan TT, Teng Y, Litchfield LM, Muluhngwi P, Al-Rayyan N, Klinge CM. Reduced expression of mir-200 family members contributes to antiestrogen resistance in ly2 human breast cancer cells. PLoS One 2013, 8(4):62334.
    • (2013) PLoS One , vol.8 , Issue.4 , pp. 62334
    • Manavalan, T.T.1    Teng, Y.2    Litchfield, L.M.3    Muluhngwi, P.4    Al-Rayyan, N.5    Klinge, C.M.6
  • 38
    • 84879984887 scopus 로고    scopus 로고
    • Kindlin 2 promotes breast cancer invasion via epigenetic silencing of the microrna200 gene family
    • Yu Y, Wu J, Guan L, Qi L, Tang Y, Ma B, Zhan J, Wang Y, Fang W, Zhang H. Kindlin 2 promotes breast cancer invasion via epigenetic silencing of the microrna200 gene family. Int J Cancer 2013, 133(6):1368-13679.
    • (2013) Int J Cancer , vol.133 , Issue.6 , pp. 1368-13679
    • Yu, Y.1    Wu, J.2    Guan, L.3    Qi, L.4    Tang, Y.5    Ma, B.6    Zhan, J.7    Wang, Y.8    Fang, W.9    Zhang, H.10
  • 40
    • 84874225673 scopus 로고    scopus 로고
    • Critical regulation of mir-200/zeb2 pathway in oct4/sox2-induced mesenchymal-to-epithelial transition and induced pluripotent stem cell generation
    • Wang G, Guo X, Hong W, Liu Q, Wei T, Lu C, Gao L, Ye D, Zhou Y, Chen J, Wang J, Wu M, Liu H, Kang J. Critical regulation of mir-200/zeb2 pathway in oct4/sox2-induced mesenchymal-to-epithelial transition and induced pluripotent stem cell generation. Proc Natl Acad Sci U S A 2013, 110(8):2858-2863.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , Issue.8 , pp. 2858-2863
    • Wang, G.1    Guo, X.2    Hong, W.3    Liu, Q.4    Wei, T.5    Lu, C.6    Gao, L.7    Ye, D.8    Zhou, Y.9    Chen, J.10    Wang, J.11    Wu, M.12    Liu, H.13    Kang, J.14
  • 43
    • 84859561616 scopus 로고    scopus 로고
    • Overexpression of the long non-coding rna meg3 impairs in vitro glioma cell proliferation
    • Wang P, Ren Z, Sun P. Overexpression of the long non-coding rna meg3 impairs in vitro glioma cell proliferation. J Cell Biochem 2012, 113(6):1868-1874.
    • (2012) J Cell Biochem , vol.113 , Issue.6 , pp. 1868-1874
    • Wang, P.1    Ren, Z.2    Sun, P.3
  • 44
    • 84858590826 scopus 로고    scopus 로고
    • Accessories to the crime: functions of cells recruited to the tumor microenvironment
    • Hanahan D, Coussens LM. Accessories to the crime: functions of cells recruited to the tumor microenvironment. Cancer Cell 2012, 21(3):309-322.
    • (2012) Cancer Cell , vol.21 , Issue.3 , pp. 309-322
    • Hanahan, D.1    Coussens, L.M.2
  • 45
  • 47
    • 54049084380 scopus 로고    scopus 로고
    • A double-negative feedback loop between zeb1-sip1 and the microrna-200 family regulates epithelial-mesenchymal transition
    • Bracken CP, Gregory PA, Kolesnikoff N, Bert AG, Wang J, Shannon MF, Goodall GJ. A double-negative feedback loop between zeb1-sip1 and the microrna-200 family regulates epithelial-mesenchymal transition. Cancer Res 2008, 68(19):7846-7854.
    • (2008) Cancer Res , vol.68 , Issue.19 , pp. 7846-7854
    • Bracken, C.P.1    Gregory, P.A.2    Kolesnikoff, N.3    Bert, A.G.4    Wang, J.5    Shannon, M.F.6    Goodall, G.J.7
  • 48
    • 44649163918 scopus 로고    scopus 로고
    • A reciprocal repression between zeb1 and members of the mir-200 family promotes emt and invasion in cancer cells
    • Burk U, Schubert J, Wellner U, Schmalhofer O, Vincan E, Spaderna S, Brabletz T. A reciprocal repression between zeb1 and members of the mir-200 family promotes emt and invasion in cancer cells. EMBO Rep 2008, 9(6):582-589.
    • (2008) EMBO Rep , vol.9 , Issue.6 , pp. 582-589
    • Burk, U.1    Schubert, J.2    Wellner, U.3    Schmalhofer, O.4    Vincan, E.5    Spaderna, S.6    Brabletz, T.7
  • 51
    • 1542353401 scopus 로고    scopus 로고
    • Control of apoptosis by p53
    • Fridman JS, Lowe SW. Control of apoptosis by p53. Oncogene 2003, 22(56):9030-9040.
    • (2003) Oncogene , vol.22 , Issue.56 , pp. 9030-9040
    • Fridman, J.S.1    Lowe, S.W.2
  • 52
    • 84873680521 scopus 로고    scopus 로고
    • The regulation of cellular metabolism by tumor suppressor p53
    • Liang Y, Liu J, Feng Z. The regulation of cellular metabolism by tumor suppressor p53. Cell Biosci 2013, 3(1):9.
    • (2013) Cell Biosci , vol.3 , Issue.1 , pp. 9
    • Liang, Y.1    Liu, J.2    Feng, Z.3
  • 53
    • 84876923776 scopus 로고    scopus 로고
    • The runx family in breast cancer: relationships with estrogen signaling
    • Chimge N-O, Frenkel B. The runx family in breast cancer: relationships with estrogen signaling. Oncogene 2012, 32(17):2121-2130.
    • (2012) Oncogene , vol.32 , Issue.17 , pp. 2121-2130
    • Chimge, N.-O.1    Frenkel, B.2
  • 54
    • 18344372018 scopus 로고    scopus 로고
    • The runx genes: gain or loss of function in cancer
    • Blyth K, Cameron ER, Neil JC. The runx genes: gain or loss of function in cancer. Nat Rev Cancer 2005, 5(5):376-387.
    • (2005) Nat Rev Cancer , vol.5 , Issue.5 , pp. 376-387
    • Blyth, K.1    Cameron, E.R.2    Neil, J.C.3
  • 55
    • 80055108192 scopus 로고    scopus 로고
    • Runx1 and its understudied role in breast cancer
    • Janes KA. Runx1 and its understudied role in breast cancer. Cell Cycle 2011, 10(20):3461-3465.
    • (2011) Cell Cycle , vol.10 , Issue.20 , pp. 3461-3465
    • Janes, K.A.1
  • 56
    • 32844465287 scopus 로고    scopus 로고
    • Regulatory mechanisms controlling human e-cadherin gene expression
    • Liu Y-N, Lee W-W, Wang C-Y, Chao T-H, Chen Y, Chen JH. Regulatory mechanisms controlling human e-cadherin gene expression. Oncogene 2005, 24(56):8277-8290.
    • (2005) Oncogene , vol.24 , Issue.56 , pp. 8277-8290
    • Liu, Y.-N.1    Lee, W.-W.2    Wang, C.-Y.3    Chao, T.-H.4    Chen, Y.5    Chen, J.H.6
  • 57
    • 84859038293 scopus 로고    scopus 로고
    • Tumor suppressor function of runx3 in breast cancer
    • Chen L-F. Tumor suppressor function of runx3 in breast cancer. J Cell Biochem 2012, 113(5):1470-1477.
    • (2012) J Cell Biochem , vol.113 , Issue.5 , pp. 1470-1477
    • Chen, L.-F.1
  • 60
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microrna targets
    • Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microrna targets. Cell 2005, 120(1):15-20.
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.