메뉴 건너뛰기




Volumn 28, Issue 15, 2012, Pages 2062-2063

miRcode: A map of putative microrna target sites in the long non-coding transcriptome

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA; MICRORNA; TRANSCRIPTOME;

EID: 84865138690     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts344     Document Type: Article
Times cited : (616)

References (27)
  • 1
    • 77951474125 scopus 로고    scopus 로고
    • Target mRNA abundance dilutes microRNA and siRNA activity
    • Arvey,A. et al. (2010) Target mRNA abundance dilutes microRNA and siRNA activity. Mol. Syst. Biol., 6, 363.
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 363
    • Arvey, A.1
  • 2
    • 77956882723 scopus 로고    scopus 로고
    • A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
    • Bernard,D. et al. (2010) A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. EMBO J., 29, 3082-3093.
    • (2010) EMBO J. , vol.29 , pp. 3082-3093
    • Bernard, D.1
  • 3
    • 38549124383 scopus 로고    scopus 로고
    • The microRNA.org resource: targets and expression
    • Betel,D. et al. (2008) The microRNA.org resource: targets and expression. Nucleic Acids Res., 36, D149-D153.
    • (2008) Nucleic Acids Res. , vol.36
    • Betel, D.1
  • 4
    • 1542748076 scopus 로고    scopus 로고
    • Aligning multiple genomic sequences with the threaded blockset aligner
    • Blanchette,M. et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res., 14, 708-715.
    • (2004) Genome Res. , vol.14 , pp. 708-715
    • Blanchette, M.1
  • 5
    • 81855183267 scopus 로고    scopus 로고
    • microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer
    • Braconi, C. et al. (2011) microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer. Oncogene, 30, 4750-4756.
    • (2011) Oncogene , vol.30 , pp. 4750-4756
    • Braconi, C.1
  • 6
    • 0025012640 scopus 로고
    • The product of the H19 gene may function as an RNA
    • Brannan,C.I. et al. (1990) The product of the H19 gene may function as an RNA. Mol. Cell. Biol., 10, 28-36.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 28-36
    • Brannan, C.I.1
  • 7
    • 0025961771 scopus 로고
    • A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome
    • Brown,C.J. et al. (1991) A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature, 349, 38-44.
    • (1991) Nature , vol.349 , pp. 38-44
    • Brown, C.J.1
  • 8
    • 34548230885 scopus 로고    scopus 로고
    • Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
    • Calin,G.A. et al. (2007) Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell, 12, 215-229.
    • (2007) Cancer Cell , vol.12 , pp. 215-229
    • Calin, G.A.1
  • 9
    • 77953798171 scopus 로고    scopus 로고
    • Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA
    • Cazalla,D. et al. (2010) Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA. Science, 328, 1563-1566.
    • (2010) Science , vol.328 , pp. 1563-1566
    • Cazalla, D.1
  • 10
    • 80054715378 scopus 로고    scopus 로고
    • A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
    • Cesana,M. et al. (2011) A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell, 147, 358-369.
    • (2011) Cell , vol.147 , pp. 358-369
    • Cesana, M.1
  • 11
    • 77957850291 scopus 로고    scopus 로고
    • Emerging roles for natural microRNA sponges
    • Ebert,M.S. and Sharp,P.A. (2010) Emerging roles for natural microRNA sponges. Curr. Biol., 20, R858-R861.
    • (2010) Curr. Biol. , vol.20
    • Ebert, M.S.1    Sharp, P.A.2
  • 12
    • 34547497309 scopus 로고    scopus 로고
    • Target mimicry provides a new mechanism for regulation of microRNA activity
    • Franco-Zorrilla,J.M. et al. (2007) Target mimicry provides a new mechanism for regulation of microRNA activity. Nat. Genet., 39, 1033-1037.
    • (2007) Nat. Genet. , vol.39 , pp. 1033-1037
    • Franco-Zorrilla, J.M.1
  • 13
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman,R.C. et al. (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res., 19, 92-105.
    • (2009) Genome Res. , vol.19 , pp. 92-105
    • Friedman, R.C.1
  • 14
    • 78651320424 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: update 2011
    • Fujita,P.A. et al. (2011) The UCSC Genome Browser database: update 2011. Nucleic Acids Res., 39, D876-D882.
    • (2011) Nucleic Acids Res. , vol.39
    • Fujita, P.A.1
  • 15
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson,A. et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell., 27, 91-105.
    • (2007) Mol. Cell. , vol.27 , pp. 91-105
    • Grimson, A.1
  • 16
    • 80052869283 scopus 로고    scopus 로고
    • lincRNAs act in the circuitry controlling pluripotency and differentiation
    • Guttman,M. et al. (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature, 477, 295-300.
    • (2011) Nature , vol.477 , pp. 295-300
    • Guttman, M.1
  • 17
    • 80455143733 scopus 로고    scopus 로고
    • miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA
    • Hansen,T.B. et al. (2011) miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. EMBO J., 30, 4414-4422.
    • (2011) EMBO J. , vol.30 , pp. 4414-4422
    • Hansen, T.B.1
  • 18
    • 33748645500 scopus 로고    scopus 로고
    • GENCODE: producing a reference annotation for ENCODE
    • Harrow,J. et al. (2006) GENCODE: producing a reference annotation for ENCODE. Genome Biol., 7 (Suppl 1), S4.1-4.9.
    • (2006) Genome Biol. , vol.7 , Issue.SUPPL3 1
    • Harrow, J.1
  • 19
    • 77951638287 scopus 로고    scopus 로고
    • Noncoding RNAgas5 is a growth arrest-and starvation-associated repressor of the glucocorticoid receptor
    • Kino,T. et al. (2010) Noncoding RNAgas5 is a growth arrest-and starvation-associated repressor of the glucocorticoid receptor. Sci. Signal, 3, ra8.
    • (2010) Sci. Signal , vol.3
    • Kino, T.1
  • 20
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • Krek,A. et al. (2005) Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500.
    • (2005) Nat. Genet. , vol.37 , pp. 495-500
    • Krek, A.1
  • 21
    • 0346094457 scopus 로고    scopus 로고
    • Prediction of mammalian microRNA targets
    • Lewis,B.P. et al. (2003) Prediction of mammalian microRNA targets. Cell, 115, 787-798.
    • (2003) Cell , vol.115 , pp. 787-798
    • Lewis, B.P.1
  • 22
    • 60349120914 scopus 로고    scopus 로고
    • Long non-coding RNAs: insights into functions
    • Mercer,T.R. et al. (2009) Long non-coding RNAs: insights into functions. Nat. Rev. Genet., 10, 155-159.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 155-159
    • Mercer, T.R.1
  • 23
    • 77953957633 scopus 로고    scopus 로고
    • A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
    • Poliseno,L. et al. (2010) A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature, 465, 1033-1038.
    • (2010) Nature , vol.465 , pp. 1033-1038
    • Poliseno, L.1
  • 24
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • Rinn,J.L. et al. (2007) Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell, 129, 1311-1323.
    • (2007) Cell , vol.129 , pp. 1311-1323
    • Rinn, J.L.1
  • 25
    • 49949117302 scopus 로고    scopus 로고
    • Widespread changes in protein synthesis induced by microRNAs
    • Selbach,M. et al. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature, 455, 58-63.
    • (2008) Nature , vol.455 , pp. 58-63
    • Selbach, M.1
  • 26
    • 77956542998 scopus 로고    scopus 로고
    • CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
    • Wang,J. et al. (2010) CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic Acids Res., 38, 5366-5383.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 5366-5383
    • Wang, J.1
  • 27
    • 79953748673 scopus 로고    scopus 로고
    • A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
    • Wang,K.C. et al. (2011) A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature, 472, 120-124.
    • (2011) Nature , vol.472 , pp. 120-124
    • Wang, K.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.