-
1
-
-
3242884054
-
Fine-scale phylogenetic architecture of a complex bacterial community
-
Acinas, S.G., Klepac-Ceraj, V., Hunt, D.E., Pharino, C., Ceraj, I., Distel, D.L., Polz, M.F., Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430 (2004), 551–554.
-
(2004)
Nature
, vol.430
, pp. 551-554
-
-
Acinas, S.G.1
Klepac-Ceraj, V.2
Hunt, D.E.3
Pharino, C.4
Ceraj, I.5
Distel, D.L.6
Polz, M.F.7
-
2
-
-
84902649784
-
Mining the human gut microbiota for effector strains that shape the immune system
-
Ahern, P.P., Faith, J.J., Gordon, J.I., Mining the human gut microbiota for effector strains that shape the immune system. Immunity 40 (2014), 815–823.
-
(2014)
Immunity
, vol.40
, pp. 815-823
-
-
Ahern, P.P.1
Faith, J.J.2
Gordon, J.I.3
-
3
-
-
84881477044
-
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
-
Atarashi, K., Tanoue, T., Oshima, K., Suda, W., Nagano, Y., Nishikawa, H., Fukuda, S., Saito, T., Narushima, S., Hase, K., Kim, S., Fritz, J.V., Wilmes, P., Ueha, S., Matsushima, K., Ohno, H., Olle, B., Sakaguchi, S., Taniguchi, T., Morita, H., Hattori, M., Honda, K., Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota. Nature 500 (2013), 232–236.
-
(2013)
Nature
, vol.500
, pp. 232-236
-
-
Atarashi, K.1
Tanoue, T.2
Oshima, K.3
Suda, W.4
Nagano, Y.5
Nishikawa, H.6
Fukuda, S.7
Saito, T.8
Narushima, S.9
Hase, K.10
Kim, S.11
Fritz, J.V.12
Wilmes, P.13
Ueha, S.14
Matsushima, K.15
Ohno, H.16
Olle, B.17
Sakaguchi, S.18
Taniguchi, T.19
Morita, H.20
Hattori, M.21
Honda, K.22
more..
-
4
-
-
85027947787
-
Induction of colonic regulatory T cells by indigenous Clostridium species
-
Atarashi, K., Tanoue, T., Shima, T., Imaoka, A., Kuwahara, T., Momose, Y., Cheng, G., Yamasaki, S., Saito, T., Ohba, Y., Taniguchi, T., Takeda, K., Hori, S., Ivanov, I.I., Umesaki, Y., Itoh, K., Honda, K., Induction of colonic regulatory T cells by indigenous Clostridium species. Science 331 (2011), 337–341.
-
(2011)
Science
, vol.331
, pp. 337-341
-
-
Atarashi, K.1
Tanoue, T.2
Shima, T.3
Imaoka, A.4
Kuwahara, T.5
Momose, Y.6
Cheng, G.7
Yamasaki, S.8
Saito, T.9
Ohba, Y.10
Taniguchi, T.11
Takeda, K.12
Hori, S.13
Ivanov, I.I.14
Umesaki, Y.15
Itoh, K.16
Honda, K.17
-
5
-
-
0002739483
-
Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
-
F.C. Neidhardt R. Curtiss ASM Press Washington, DC
-
Bachmann, B., Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. Neidhardt, F.C., Curtiss, R., (eds.) Escherichia coli and Salmonella: Cellular and Molecular Biology, 1996, ASM Press, Washington, DC, 2460–2488.
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 2460-2488
-
-
Bachmann, B.1
-
6
-
-
84950291119
-
Functional overlap of the Arabidopsis leaf and root microbiota
-
Bai, Y., Muller, D.B., Srinivas, G., Garrido-Oter, R., Potthoff, E., Rott, M., Dombrowski, N., Munch, P.C., Spaepen, S., Remus-Emsermann, M., Huttel, B., McHardy, A.C., Vorholt, J.A., Schulze-Lefert, P., Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528 (2015), 364–369.
-
(2015)
Nature
, vol.528
, pp. 364-369
-
-
Bai, Y.1
Muller, D.B.2
Srinivas, G.3
Garrido-Oter, R.4
Potthoff, E.5
Rott, M.6
Dombrowski, N.7
Munch, P.C.8
Spaepen, S.9
Remus-Emsermann, M.10
Huttel, B.11
McHardy, A.C.12
Vorholt, J.A.13
Schulze-Lefert, P.14
-
7
-
-
0036087411
-
Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice
-
Balish, E., Warner, T., Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice. Am. J. Pathol. 160 (2002), 2253–2257.
-
(2002)
Am. J. Pathol.
, vol.160
, pp. 2253-2257
-
-
Balish, E.1
Warner, T.2
-
8
-
-
79956224326
-
Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model
-
Becker, N., Kunath, J., Loh, G., Blaut, M., Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model. Gut Microbes 2 (2011), 25–33.
-
(2011)
Gut Microbes
, vol.2
, pp. 25-33
-
-
Becker, N.1
Kunath, J.2
Loh, G.3
Blaut, M.4
-
9
-
-
78449296237
-
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
-
Benson, A.K., Kelly, S.A., Legge, R., Ma, F., Low, S.J., Kim, J., Zhang, M., Oh, P.L., Nehrenberg, D., Hua, K., Kachman, S.D., Moriyama, E.N., Walter, J., Peterson, D.A., Pomp, D., Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc. Natl. Acad. Sci. U.S.A. 107 (2010), 18933–18938.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 18933-18938
-
-
Benson, A.K.1
Kelly, S.A.2
Legge, R.3
Ma, F.4
Low, S.J.5
Kim, J.6
Zhang, M.7
Oh, P.L.8
Nehrenberg, D.9
Hua, K.10
Kachman, S.D.11
Moriyama, E.N.12
Walter, J.13
Peterson, D.A.14
Pomp, D.15
-
10
-
-
0030297089
-
The indigenous gastrointestinal microflora
-
Berg, R.D., The indigenous gastrointestinal microflora. Trends Microbiol. 4 (1996), 430–435.
-
(1996)
Trends Microbiol.
, vol.4
, pp. 430-435
-
-
Berg, R.D.1
-
11
-
-
84879075084
-
Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?
-
Berry, D., Reinisch, W., Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?. Best Pract. Res. Clin. Gastroenterol. 27 (2013), 47–58.
-
(2013)
Best Pract. Res. Clin. Gastroenterol.
, vol.27
, pp. 47-58
-
-
Berry, D.1
Reinisch, W.2
-
12
-
-
84875246466
-
Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing
-
Berry, D., Stecher, B., Schintlmeister, A., Reichert, J., Brugiroux, S., Wild, B., Wanek, W., Richter, A., Rauch, I., Decker, T., Loy, A., Wagner, M., Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing. Proc. Natl. Acad. Sci. U.S.A. 110 (2013), 4720–4725.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 4720-4725
-
-
Berry, D.1
Stecher, B.2
Schintlmeister, A.3
Reichert, J.4
Brugiroux, S.5
Wild, B.6
Wanek, W.7
Richter, A.8
Rauch, I.9
Decker, T.10
Loy, A.11
Wagner, M.12
-
13
-
-
33748446941
-
Host gene expression in the colon of gnotobiotic interleukin-2-deficient mice colonized with commensal colitogenic or noncolitogenic bacterial strains: common patterns and bacteria strain specific signatures
-
Bohn, E., Bechtold, O., Zahir, N., Frick, J.S., Reimann, J., Jilge, B., Autenrieth, I.B., Host gene expression in the colon of gnotobiotic interleukin-2-deficient mice colonized with commensal colitogenic or noncolitogenic bacterial strains: common patterns and bacteria strain specific signatures. Inflamm. Bowel Dis. 12 (2006), 853–862.
-
(2006)
Inflamm. Bowel Dis.
, vol.12
, pp. 853-862
-
-
Bohn, E.1
Bechtold, O.2
Zahir, N.3
Frick, J.S.4
Reimann, J.5
Jilge, B.6
Autenrieth, I.B.7
-
14
-
-
56749146467
-
Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis
-
Bouskra, D., Brezillon, C., Berard, M., Werts, C., Varona, R., Boneca, I.G., Eberl, G., Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis. Nature 456 (2008), 507–510.
-
(2008)
Nature
, vol.456
, pp. 507-510
-
-
Bouskra, D.1
Brezillon, C.2
Berard, M.3
Werts, C.4
Varona, R.5
Boneca, I.G.6
Eberl, G.7
-
15
-
-
0029845965
-
A model of host–microbial interactions in an open mammalian ecosystem
-
Bry, L., Falk, P.G., Midtvedt, T., Gordon, J.I., A model of host–microbial interactions in an open mammalian ecosystem. Science 273 (1996), 1380–1383.
-
(1996)
Science
, vol.273
, pp. 1380-1383
-
-
Bry, L.1
Falk, P.G.2
Midtvedt, T.3
Gordon, J.I.4
-
16
-
-
84886795788
-
Microbiota-mediated colonization resistance against intestinal pathogens
-
Buffie, C.G., Pamer, E.G., Microbiota-mediated colonization resistance against intestinal pathogens. Nat. Rev. Immunol. 13 (2013), 790–801.
-
(2013)
Nat. Rev. Immunol.
, vol.13
, pp. 790-801
-
-
Buffie, C.G.1
Pamer, E.G.2
-
17
-
-
84867745001
-
Host genetic and environmental effects on mouse intestinal microbiota
-
Campbell, J.H., Foster, C.M., Vishnivetskaya, T., Campbell, A.G., Yang, Z.K., Wymore, A., Palumbo, A.V., Chesler, E.J., Podar, M., Host genetic and environmental effects on mouse intestinal microbiota. ISME J. 6 (2012), 2033–2044.
-
(2012)
ISME J.
, vol.6
, pp. 2033-2044
-
-
Campbell, J.H.1
Foster, C.M.2
Vishnivetskaya, T.3
Campbell, A.G.4
Yang, Z.K.5
Wymore, A.6
Palumbo, A.V.7
Chesler, E.J.8
Podar, M.9
-
18
-
-
84862637797
-
Gut immune maturation depends on colonization with a host-specific microbiota
-
Chung, H., Pamp, S.J., Hill, J.A., Surana, N.K., Edelman, S.M., Troy, E.B., Reading, N.C., Villablanca, E.J., Wang, S., Mora, J.R., Umesaki, Y., Mathis, D., Benoist, C., Relman, D.A., Kasper, D.L., Gut immune maturation depends on colonization with a host-specific microbiota. Cell 149 (2012), 1578–1593.
-
(2012)
Cell
, vol.149
, pp. 1578-1593
-
-
Chung, H.1
Pamp, S.J.2
Hill, J.A.3
Surana, N.K.4
Edelman, S.M.5
Troy, E.B.6
Reading, N.C.7
Villablanca, E.J.8
Wang, S.9
Mora, J.R.10
Umesaki, Y.11
Mathis, D.12
Benoist, C.13
Relman, D.A.14
Kasper, D.L.15
-
19
-
-
84922017739
-
Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance
-
Clavel, T., Desmarchelier, C., Haller, D., Gerard, P., Rohn, S., Lepage, P., Daniel, H., Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance. Gut Microbes 5 (2014), 544–551.
-
(2014)
Gut Microbes
, vol.5
, pp. 544-551
-
-
Clavel, T.1
Desmarchelier, C.2
Haller, D.3
Gerard, P.4
Rohn, S.5
Lepage, P.6
Daniel, H.7
-
20
-
-
67649406203
-
Importance of glycans to the host-bacteroides mutualism in the mammalian intestine
-
Comstock, L.E., Importance of glycans to the host-bacteroides mutualism in the mammalian intestine. Cell Host Microbe 5 (2009), 522–526.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 522-526
-
-
Comstock, L.E.1
-
21
-
-
84959054093
-
Commensal and pathogenic Escherichia coli metabolism in the gut
-
Conway, T., Cohen, P.S., Commensal and pathogenic Escherichia coli metabolism in the gut. Microbiol. Spectr., 3, 2015, 10.1128/microbiolspec.MBP-0006-2014.
-
(2015)
Microbiol. Spectr.
, vol.3
-
-
Conway, T.1
Cohen, P.S.2
-
22
-
-
78650525091
-
Production of an antibacterial substance in the digestive tract involved in colonization-resistance against Clostridium perfringens
-
Crost, E.H., Pujol, A., Ladire, M., Dabard, J., Raibaud, P., Carlier, J.P., Fons, M., Production of an antibacterial substance in the digestive tract involved in colonization-resistance against Clostridium perfringens. Anaerobe 16 (2010), 597–603.
-
(2010)
Anaerobe
, vol.16
, pp. 597-603
-
-
Crost, E.H.1
Pujol, A.2
Ladire, M.3
Dabard, J.4
Raibaud, P.5
Carlier, J.P.6
Fons, M.7
-
23
-
-
79959827651
-
Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut
-
De Paepe, M., Gaboriau-Routhiau, V., Rainteau, D., Rakotobe, S., Taddei, F., Cerf-Bensussan, N., Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut. PLoS Genet., 7, 2011, e1002107.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002107
-
-
De Paepe, M.1
Gaboriau-Routhiau, V.2
Rainteau, D.3
Rakotobe, S.4
Taddei, F.5
Cerf-Bensussan, N.6
-
24
-
-
70249150400
-
A Mesocosm of Lactobacillus johnsonii, Bifidobacterium longum, and Escherichia coli in the mouse gut
-
Denou, E., Rezzonico, E., Panoff, J.M., Arigoni, F., Brussow, H., A Mesocosm of Lactobacillus johnsonii, Bifidobacterium longum, and Escherichia coli in the mouse gut. DNA Cell Biol. 28 (2009), 413–422.
-
(2009)
DNA Cell Biol.
, vol.28
, pp. 413-422
-
-
Denou, E.1
Rezzonico, E.2
Panoff, J.M.3
Arigoni, F.4
Brussow, H.5
-
25
-
-
83655210633
-
Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila
-
Derrien, M., Van Baarlen, P., Hooiveld, G., Norin, E., Muller, M., de Vos, W.M., Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila. Front. Microbiol., 2, 2011, 166.
-
(2011)
Front. Microbiol.
, vol.2
, pp. 166
-
-
Derrien, M.1
Van Baarlen, P.2
Hooiveld, G.3
Norin, E.4
Muller, M.5
de Vos, W.M.6
-
26
-
-
84863436944
-
−/− mice
-
−/− mice. Nature 487 (2012), 104–108.
-
(2012)
Nature
, vol.487
, pp. 104-108
-
-
Devkota, S.1
Wang, Y.2
Musch, M.W.3
Leone, V.4
Fehlner-Peach, H.5
Nadimpalli, A.6
Antonopoulos, D.A.7
Jabri, B.8
Chang, E.B.9
-
27
-
-
84939567798
-
A biosynthetic pathway for a prominent class of microbiota-derived bile acids
-
Devlin, A.S., Fischbach, M.A., A biosynthetic pathway for a prominent class of microbiota-derived bile acids. Nat. Chem. Biol. 11 (2015), 685–690.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 685-690
-
-
Devlin, A.S.1
Fischbach, M.A.2
-
28
-
-
0032803862
-
Phylogeny of the defined murine microbiota: altered Schaedler flora
-
Dewhirst, F.E., Chien, C.C., Paster, B.J., Ericson, R.L., Orcutt, R.P., Schauer, D.B., Fox, J.G., Phylogeny of the defined murine microbiota: altered Schaedler flora. Appl. Environ. Microbiol. 65 (1999), 3287–3292.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3287-3292
-
-
Dewhirst, F.E.1
Chien, C.C.2
Paster, B.J.3
Ericson, R.L.4
Orcutt, R.P.5
Schauer, D.B.6
Fox, J.G.7
-
29
-
-
84895482501
-
Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes
-
Dichosa, A.E., Daughton, A.R., Reitenga, K.G., Fitzsimons, M.S., Han, C.S., Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes. Nat. Protoc. 9 (2014), 608–621.
-
(2014)
Nat. Protoc.
, vol.9
, pp. 608-621
-
-
Dichosa, A.E.1
Daughton, A.R.2
Reitenga, K.G.3
Fitzsimons, M.S.4
Han, C.S.5
-
30
-
-
0000297357
-
The effect of the intestinal flora on the growth rate of mice, and on their susceptibility to experimental infections
-
Dubos, R.J., Schaedler, R.W., The effect of the intestinal flora on the growth rate of mice, and on their susceptibility to experimental infections. J. Exp. Med. 111 (1960), 407–417.
-
(1960)
J. Exp. Med.
, vol.111
, pp. 407-417
-
-
Dubos, R.J.1
Schaedler, R.W.2
-
31
-
-
84941069145
-
The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease
-
Eppig, J.T., Blake, J.A., Bult, C.J., Kadin, J.A., Richardson, J.E., Mouse Genome Database Group. The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease. Nucleic Acids Res. 43 (2015), D726–D736.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D726-D736
-
-
Eppig, J.T.1
Blake, J.A.2
Bult, C.J.3
Kadin, J.A.4
Richardson, J.E.5
-
32
-
-
84900452663
-
−/− mice
-
−/− mice. Infect. Immun. 82 (2014), 2239–2246.
-
(2014)
Infect. Immun.
, vol.82
, pp. 2239-2246
-
-
Eun, C.S.1
Mishima, Y.2
Wohlgemuth, S.3
Liu, B.4
Bower, M.5
Carroll, I.M.6
Sartor, R.B.7
-
33
-
-
79959855078
-
Predicting a human gut microbiota's response to diet in gnotobiotic mice
-
Faith, J.J., McNulty, N.P., Rey, F.E., Gordon, J.I., Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science 333 (2011), 101–104.
-
(2011)
Science
, vol.333
, pp. 101-104
-
-
Faith, J.J.1
McNulty, N.P.2
Rey, F.E.3
Gordon, J.I.4
-
34
-
-
84867225799
-
The role of the gut microbiota in nutrition and health
-
Flint, H.J., Scott, K.P., Louis, P., Duncan, S.H., The role of the gut microbiota in nutrition and health. Nat. Rev. Gastroenterol. Hepatol. 9 (2012), 577–589.
-
(2012)
Nat. Rev. Gastroenterol. Hepatol.
, vol.9
, pp. 577-589
-
-
Flint, H.J.1
Scott, K.P.2
Louis, P.3
Duncan, S.H.4
-
35
-
-
84864384245
-
The “most wanted” taxa from the human microbiome for whole genome sequencing
-
Fodor, A.A., DeSantis, T.Z., Wylie, K.M., Badger, J.H., Ye, Y., Hepburn, T., Hu, P., Sodergren, E., Liolios, K., Huot-Creasy, H., Birren, B.W., Earl, A.M., The “most wanted” taxa from the human microbiome for whole genome sequencing. PLoS ONE, 7, 2012, e41294.
-
(2012)
PLoS ONE
, vol.7
, pp. e41294
-
-
Fodor, A.A.1
DeSantis, T.Z.2
Wylie, K.M.3
Badger, J.H.4
Ye, Y.5
Hepburn, T.6
Hu, P.7
Sodergren, E.8
Liolios, K.9
Huot-Creasy, H.10
Birren, B.W.11
Earl, A.M.12
-
36
-
-
79952266302
-
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri
-
Frese, S.A., Benson, A.K., Tannock, G.W., Loach, D.M., Kim, J., Zhang, M., Oh, P.L., Heng, N.C., Patil, P.B., Juge, N., Mackenzie, D.A., Pearson, B.M., Lapidus, A., Dalin, E., Tice, H., Goltsman, E., Land, M., Hauser, L., Ivanova, N., Kyrpides, N.C., Walter, J., The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet., 7, 2011, e1001314.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1001314
-
-
Frese, S.A.1
Benson, A.K.2
Tannock, G.W.3
Loach, D.M.4
Kim, J.5
Zhang, M.6
Oh, P.L.7
Heng, N.C.8
Patil, P.B.9
Juge, N.10
Mackenzie, D.A.11
Pearson, B.M.12
Lapidus, A.13
Dalin, E.14
Tice, H.15
Goltsman, E.16
Land, M.17
Hauser, L.18
Ivanova, N.19
Kyrpides, N.C.20
Walter, J.21
more..
-
37
-
-
79251584066
-
Bifidobacteria can protect from enteropathogenic infection through production of acetate
-
Fukuda, S., Toh, H., Hase, K., Oshima, K., Nakanishi, Y., Yoshimura, K., Tobe, T., Clarke, J.M., Topping, D.L., Suzuki, T., Taylor, T.D., Itoh, K., Kikuchi, J., Morita, H., Hattori, M., Ohno, H., Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature 469 (2011), 543–547.
-
(2011)
Nature
, vol.469
, pp. 543-547
-
-
Fukuda, S.1
Toh, H.2
Hase, K.3
Oshima, K.4
Nakanishi, Y.5
Yoshimura, K.6
Tobe, T.7
Clarke, J.M.8
Topping, D.L.9
Suzuki, T.10
Taylor, T.D.11
Itoh, K.12
Kikuchi, J.13
Morita, H.14
Hattori, M.15
Ohno, H.16
-
38
-
-
70349742524
-
The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses
-
Gaboriau-Routhiau, V., Rakotobe, S., Lecuyer, E., Mulder, I., Lan, A., Bridonneau, C., Rochet, V., Pisi, A., De Paepe, M., Brandi, G., Eberl, G., Snel, J., Kelly, D., Cerf-Bensussan, N., The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses. Immunity 31 (2009), 677–689.
-
(2009)
Immunity
, vol.31
, pp. 677-689
-
-
Gaboriau-Routhiau, V.1
Rakotobe, S.2
Lecuyer, E.3
Mulder, I.4
Lan, A.5
Bridonneau, C.6
Rochet, V.7
Pisi, A.8
De Paepe, M.9
Brandi, G.10
Eberl, G.11
Snel, J.12
Kelly, D.13
Cerf-Bensussan, N.14
-
39
-
-
84883813272
-
Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice
-
Ganesh, B.P., Klopfleisch, R., Loh, G., Blaut, M., Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice. PLoS ONE, 8, 2013, e74963.
-
(2013)
PLoS ONE
, vol.8
, pp. e74963
-
-
Ganesh, B.P.1
Klopfleisch, R.2
Loh, G.3
Blaut, M.4
-
40
-
-
79956315886
-
Intestinal bacterial colonization induces mutualistic regulatory T cell responses
-
Geuking, M.B., Cahenzli, J., Lawson, M.A., Ng, D.C., Slack, E., Hapfelmeier, S., McCoy, K.D., Macpherson, A.J., Intestinal bacterial colonization induces mutualistic regulatory T cell responses. Immunity 34 (2011), 794–806.
-
(2011)
Immunity
, vol.34
, pp. 794-806
-
-
Geuking, M.B.1
Cahenzli, J.2
Lawson, M.A.3
Ng, D.C.4
Slack, E.5
Hapfelmeier, S.6
McCoy, K.D.7
Macpherson, A.J.8
-
41
-
-
84867981662
-
Enrichment of previously uncultured bacteria from natural complex communities by adhesion to solid surfaces
-
Gich, F., Janys, M.A., Konig, M., Overmann, J., Enrichment of previously uncultured bacteria from natural complex communities by adhesion to solid surfaces. Environ. Microbiol. 14 (2012), 2984–2997.
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 2984-2997
-
-
Gich, F.1
Janys, M.A.2
Konig, M.3
Overmann, J.4
-
42
-
-
79955025122
-
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
-
Goodman, A.L., Kallstrom, G., Faith, J.J., Reyes, A., Moore, A., Dantas, G., Gordon, J.I., Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Proc. Natl. Acad. Sci. U.S.A. 108 (2011), 6252–6257.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 6252-6257
-
-
Goodman, A.L.1
Kallstrom, G.2
Faith, J.J.3
Reyes, A.4
Moore, A.5
Dantas, G.6
Gordon, J.I.7
-
43
-
-
84947999013
-
Colonization of C57BL/6 mice by a potential probiotic Bifidobacterium bifidum strain under germ-free and specific pathogen-free conditions and during experimental colitis
-
Grimm, V., Radulovic, K., Riedel, C.U., Colonization of C57BL/6 mice by a potential probiotic Bifidobacterium bifidum strain under germ-free and specific pathogen-free conditions and during experimental colitis. PLoS ONE, 10, 2015, e0139935.
-
(2015)
PLoS ONE
, vol.10
, pp. e0139935
-
-
Grimm, V.1
Radulovic, K.2
Riedel, C.U.3
-
44
-
-
84857530417
-
Mouse background strain profoundly influences Paneth cell function and intestinal microbial composition
-
Gulati, A.S., Shanahan, M.T., Arthur, J.C., Grossniklaus, E., von Furstenberg, R.J., Kreuk, L., Henning, S.J., Jobin, C., Sartor, R.B., Mouse background strain profoundly influences Paneth cell function and intestinal microbial composition. PLoS ONE, 7, 2012, e32403.
-
(2012)
PLoS ONE
, vol.7
, pp. e32403
-
-
Gulati, A.S.1
Shanahan, M.T.2
Arthur, J.C.3
Grossniklaus, E.4
von Furstenberg, R.J.5
Kreuk, L.6
Henning, S.J.7
Jobin, C.8
Sartor, R.B.9
-
45
-
-
77954051526
-
Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses
-
Hapfelmeier, S., Lawson, M.A., Slack, E., Kirundi, J.K., Stoel, M., Heikenwalder, M., Cahenzli, J., Velykoredko, Y., Balmer, M.L., Endt, K., Geuking, M.B., Curtiss, R. 3rd, McCoy, K.D., Macpherson, A.J., Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science 328 (2010), 1705–1709.
-
(2010)
Science
, vol.328
, pp. 1705-1709
-
-
Hapfelmeier, S.1
Lawson, M.A.2
Slack, E.3
Kirundi, J.K.4
Stoel, M.5
Heikenwalder, M.6
Cahenzli, J.7
Velykoredko, Y.8
Balmer, M.L.9
Endt, K.10
Geuking, M.B.11
Curtiss, R.12
McCoy, K.D.13
Macpherson, A.J.14
-
46
-
-
0035843993
-
Commensal host–bacterial relationships in the gut
-
Hooper, L.V., Gordon, J.I., Commensal host–bacterial relationships in the gut. Science 292 (2001), 1115–1118.
-
(2001)
Science
, vol.292
, pp. 1115-1118
-
-
Hooper, L.V.1
Gordon, J.I.2
-
47
-
-
84861980130
-
Interactions between the microbiota and the immune system
-
Hooper, L.V., Littman, D.R., Macpherson, A.J., Interactions between the microbiota and the immune system. Science 336 (2012), 1268–1273.
-
(2012)
Science
, vol.336
, pp. 1268-1273
-
-
Hooper, L.V.1
Littman, D.R.2
Macpherson, A.J.3
-
48
-
-
84911468185
-
Members of the human gut microbiota involved in recovery from Vibrio cholerae infection
-
Hsiao, A., Ahmed, A.M., Subramanian, S., Griffin, N.W., Drewry, L.L., Petri, W.A. Jr., Haque, R., Ahmed, T., Gordon, J.I., Members of the human gut microbiota involved in recovery from Vibrio cholerae infection. Nature 515 (2014), 423–426.
-
(2014)
Nature
, vol.515
, pp. 423-426
-
-
Hsiao, A.1
Ahmed, A.M.2
Subramanian, S.3
Griffin, N.W.4
Drewry, L.L.5
Petri, W.A.6
Haque, R.7
Ahmed, T.8
Gordon, J.I.9
-
49
-
-
80051925894
-
The human commensal Bacteroides fragilis binds intestinal mucin
-
Huang, J.Y., Lee, S.M., Mazmanian, S.K., The human commensal Bacteroides fragilis binds intestinal mucin. Anaerobe 17 (2011), 137–141.
-
(2011)
Anaerobe
, vol.17
, pp. 137-141
-
-
Huang, J.Y.1
Lee, S.M.2
Mazmanian, S.K.3
-
50
-
-
84942195237
-
A comprehensive repertoire of prokaryotic species identified in human beings
-
Hugon, P., Dufour, J.C., Colson, P., Fournier, P.E., Sallah, K., Raoult, D., A comprehensive repertoire of prokaryotic species identified in human beings. Lancet Infect. Dis. 15 (2015), 1211–1219.
-
(2015)
Lancet Infect. Dis.
, vol.15
, pp. 1211-1219
-
-
Hugon, P.1
Dufour, J.C.2
Colson, P.3
Fournier, P.E.4
Sallah, K.5
Raoult, D.6
-
51
-
-
80054862011
-
Bile acid is a host factor that regulates the composition of the cecal microbiota in rats
-
Islam, K.B., Fukiya, S., Hagio, M., Fujii, N., Ishizuka, S., Ooka, T., Ogura, Y., Hayashi, T., Yokota, A., Bile acid is a host factor that regulates the composition of the cecal microbiota in rats. Gastroenterology 141 (2011), 1773–1781.
-
(2011)
Gastroenterology
, vol.141
, pp. 1773-1781
-
-
Islam, K.B.1
Fukiya, S.2
Hagio, M.3
Fujii, N.4
Ishizuka, S.5
Ooka, T.6
Ogura, Y.7
Hayashi, T.8
Yokota, A.9
-
52
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
Ivanov, I.I., Atarashi, K., Manel, N., Brodie, E.L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K.C., Santee, C.A., Lynch, S.V., Tanoue, T., Imaoka, A., Itoh, K., Takeda, K., Umesaki, Y., Honda, K., Littman, D.R., Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139 (2009), 485–498.
-
(2009)
Cell
, vol.139
, pp. 485-498
-
-
Ivanov, I.I.1
Atarashi, K.2
Manel, N.3
Brodie, E.L.4
Shima, T.5
Karaoz, U.6
Wei, D.7
Goldfarb, K.C.8
Santee, C.A.9
Lynch, S.V.10
Tanoue, T.11
Imaoka, A.12
Itoh, K.13
Takeda, K.14
Umesaki, Y.15
Honda, K.16
Littman, D.R.17
-
53
-
-
84922160830
-
The composition of the gut microbiota shapes the colon mucus barrier
-
Jakobsson, H.E., Rodriguez-Pineiro, A.M., Schutte, A., Ermund, A., Boysen, P., Bemark, M., Sommer, F., Backhed, F., Hansson, G.C., Johansson, M.E., The composition of the gut microbiota shapes the colon mucus barrier. EMBO Rep. 16 (2015), 164–177.
-
(2015)
EMBO Rep.
, vol.16
, pp. 164-177
-
-
Jakobsson, H.E.1
Rodriguez-Pineiro, A.M.2
Schutte, A.3
Ermund, A.4
Boysen, P.5
Bemark, M.6
Sommer, F.7
Backhed, F.8
Hansson, G.C.9
Johansson, M.E.10
-
54
-
-
84947425582
-
Normalization of host intestinal mucus layers requires long-term microbial colonization
-
Johansson, M.E., Jakobsson, H.E., Holmen-Larsson, J., Schutte, A., Ermund, A., Rodriguez-Pineiro, A.M., Arike, L., Wising, C., Svensson, F., Backhed, F., Hansson, G.C., Normalization of host intestinal mucus layers requires long-term microbial colonization. Cell Host Microbe 18 (2015), 582–592.
-
(2015)
Cell Host Microbe
, vol.18
, pp. 582-592
-
-
Johansson, M.E.1
Jakobsson, H.E.2
Holmen-Larsson, J.3
Schutte, A.4
Ermund, A.5
Rodriguez-Pineiro, A.M.6
Arike, L.7
Wising, C.8
Svensson, F.9
Backhed, F.10
Hansson, G.C.11
-
55
-
-
83655193511
-
The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen's virulence factors, and the host's mucosal immune response
-
Kaiser, P., Diard, M., Stecher, B., Hardt, W.D., The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen's virulence factors, and the host's mucosal immune response. Immunol. Rev. 245 (2012), 56–83.
-
(2012)
Immunol. Rev.
, vol.245
, pp. 56-83
-
-
Kaiser, P.1
Diard, M.2
Stecher, B.3
Hardt, W.D.4
-
56
-
-
84861972274
-
Regulated virulence controls the ability of a pathogen to compete with the gut microbiota
-
Kamada, N., Kim, Y.G., Sham, H.P., Vallance, B.A., Puente, J.L., Martens, E.C., Nunez, G., Regulated virulence controls the ability of a pathogen to compete with the gut microbiota. Science 336 (2012), 1325–1329.
-
(2012)
Science
, vol.336
, pp. 1325-1329
-
-
Kamada, N.1
Kim, Y.G.2
Sham, H.P.3
Vallance, B.A.4
Puente, J.L.5
Martens, E.C.6
Nunez, G.7
-
57
-
-
84885711264
-
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota
-
Kashyap, P.C., Marcobal, A., Ursell, L.K., Smits, S.A., Sonnenburg, E.D., Costello, E.K., Higginbottom, S.K., Domino, S.E., Holmes, S.P., Relman, D.A., Knight, R., Gordon, J.I., Sonnenburg, J.L., Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proc. Natl. Acad. Sci. U.S.A. 110 (2013), 17059–17064.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 17059-17064
-
-
Kashyap, P.C.1
Marcobal, A.2
Ursell, L.K.3
Smits, S.A.4
Sonnenburg, E.D.5
Costello, E.K.6
Higginbottom, S.K.7
Domino, S.E.8
Holmes, S.P.9
Relman, D.A.10
Knight, R.11
Gordon, J.I.12
Sonnenburg, J.L.13
-
58
-
-
20444367601
-
Movement and fixation of intestinal microbiota after administration of human feces to germfree mice
-
Kibe, R., Sakamoto, M., Yokota, H., Ishikawa, H., Aiba, Y., Koga, Y., Benno, Y., Movement and fixation of intestinal microbiota after administration of human feces to germfree mice. Appl. Environ. Microbiol. 71 (2005), 3171–3178.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3171-3178
-
-
Kibe, R.1
Sakamoto, M.2
Yokota, H.3
Ishikawa, H.4
Aiba, Y.5
Koga, Y.6
Benno, Y.7
-
59
-
-
84863230041
-
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
-
Kim, O.S., Cho, Y.J., Lee, K., Yoon, S.H., Kim, M., Na, H., Park, S.C., Jeon, Y.S., Lee, J.H., Yi, H., Won, S., Chun, J., Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62 (2012), 716–721.
-
(2012)
Int. J. Syst. Evol. Microbiol.
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
Na, H.6
Park, S.C.7
Jeon, Y.S.8
Lee, J.H.9
Yi, H.10
Won, S.11
Chun, J.12
-
60
-
-
0026877204
-
Intestinal, segmented, filamentous bacteria
-
Klaasen, H.L., Koopman, J.P., Poelma, F.G., Beynen, A.C., Intestinal, segmented, filamentous bacteria. FEMS Microbiol. Rev. 8 (1992), 165–180.
-
(1992)
FEMS Microbiol. Rev.
, vol.8
, pp. 165-180
-
-
Klaasen, H.L.1
Koopman, J.P.2
Poelma, F.G.3
Beynen, A.C.4
-
61
-
-
84959880260
-
Colonization of germ-free mice with a mixture of three lactobacillus strains enhances the integrity of gut mucosa and ameliorates allergic sensitization
-
Kozakova, H., Schwarzer, M., Tuckova, L., Srutkova, D., Czarnowska, E., Rosiak, I., Hudcovic, T., Schabussova, I., Hermanova, P., Zakostelska, Z., Aleksandrzak-Piekarczyk, T., Koryszewska-Baginska, A., Tlaskalova-Hogenova, H., Cukrowska, B., Colonization of germ-free mice with a mixture of three lactobacillus strains enhances the integrity of gut mucosa and ameliorates allergic sensitization. Cell. Mol. Immunol., 2015, 10.1038/cmi.2015.09.
-
(2015)
Cell. Mol. Immunol.
-
-
Kozakova, H.1
Schwarzer, M.2
Tuckova, L.3
Srutkova, D.4
Czarnowska, E.5
Rosiak, I.6
Hudcovic, T.7
Schabussova, I.8
Hermanova, P.9
Zakostelska, Z.10
Aleksandrzak-Piekarczyk, T.11
Koryszewska-Baginska, A.12
Tlaskalova-Hogenova, H.13
Cukrowska, B.14
-
62
-
-
84977667775
-
Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract
-
Krumbeck, J.A., Marsteller, N.L., Frese, S.A., Peterson, D.A., Ramer-Tait, A.E., Hutkins, R.W., Walter, J., Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract. Environ. Microbiol., 2015, 10.1111/1462-2920.13108.
-
(2015)
Environ. Microbiol.
-
-
Krumbeck, J.A.1
Marsteller, N.L.2
Frese, S.A.3
Peterson, D.A.4
Ramer-Tait, A.E.5
Hutkins, R.W.6
Walter, J.7
-
63
-
-
84922937083
-
MyD88 signaling in T cells directs IgA-mediated control of the microbiota to promote health
-
Kubinak, J.L., Petersen, C., Stephens, W.Z., Soto, R., Bake, E., O'Connell, R.M., Round, J.L., MyD88 signaling in T cells directs IgA-mediated control of the microbiota to promote health. Cell Host Microbe 17 (2015), 153–163.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 153-163
-
-
Kubinak, J.L.1
Petersen, C.2
Stephens, W.Z.3
Soto, R.4
Bake, E.5
O'Connell, R.M.6
Round, J.L.7
-
64
-
-
84920943976
-
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
-
Lagier, J.C., Hugon, P., Khelaifia, S., Fournier, P.E., La Scola, B., Raoult, D., The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin. Microbiol. Rev. 28 (2015), 237–264.
-
(2015)
Clin. Microbiol. Rev.
, vol.28
, pp. 237-264
-
-
Lagier, J.C.1
Hugon, P.2
Khelaifia, S.3
Fournier, P.E.4
La Scola, B.5
Raoult, D.6
-
65
-
-
84961999746
-
Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design
-
Laukens, D., Brinkman, B.M., Raes, J., De Vos, M., Vandenabeele, P., Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design. FEMS Microbiol. Rev. 40 (2015), 117–132.
-
(2015)
FEMS Microbiol. Rev.
, vol.40
, pp. 117-132
-
-
Laukens, D.1
Brinkman, B.M.2
Raes, J.3
De Vos, M.4
Vandenabeele, P.5
-
66
-
-
84960465464
-
Proposal to restrict the genus Clostridium (Prazmowski) to Clostridium butyricum and related species
-
Lawson, P.A., Rainey, F.A., Proposal to restrict the genus Clostridium (Prazmowski) to Clostridium butyricum and related species. Int. J. Syst. Evol. Microbiol., 2015, 10.1099/ijsem.0.000824.
-
(2015)
Int. J. Syst. Evol. Microbiol.
-
-
Lawson, P.A.1
Rainey, F.A.2
-
67
-
-
78651301328
-
The sequence read archive
-
Leinonen, R., Sugawara, H., Shumway, M., The sequence read archive. Nucl. Acids Res. 39 (2011), D19–D21.
-
(2011)
Nucl. Acids Res.
, vol.39
, pp. D19-D21
-
-
Leinonen, R.1
Sugawara, H.2
Shumway, M.3
-
68
-
-
23344442120
-
Obesity alters gut microbial ecology
-
Ley, R.E., Backhed, F., Turnbaugh, P., Lozupone, C.A., Knight, R.D., Gordon, J.I., Obesity alters gut microbial ecology. Proc. Natl. Acad. Sci. U.S.A. 102 (2005), 11070–11075.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
69
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
Ley, R.E., Hamady, M., Lozupone, C., Turnbaugh, P.J., Ramey, R.R., Bircher, J.S., Schlegel, M.L., Tucker, T.A., Schrenzel, M.D., Knight, R., Gordon, J.I., Evolution of mammals and their gut microbes. Science 320 (2008), 1647–1651.
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
Bircher, J.S.6
Schlegel, M.L.7
Tucker, T.A.8
Schrenzel, M.D.9
Knight, R.10
Gordon, J.I.11
-
70
-
-
52049092682
-
Worlds within worlds: evolution of the vertebrate gut microbiota
-
Ley, R.E., Lozupone, C.A., Hamady, M., Knight, R., Gordon, J.I., Worlds within worlds: evolution of the vertebrate gut microbiota. Nat. Rev. Microbiol. 6 (2008), 776–788.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.I.5
-
71
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley, R.E., Peterson, D.A., Gordon, J.I., Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124 (2006), 837–848.
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
72
-
-
84942237687
-
The outer mucus layer hosts a distinct intestinal microbial niche
-
Li, H., Limenitakis, J.P., Fuhrer, T., Geuking, M.B., Lawson, M.A., Wyss, M., Brugiroux, S., Keller, I., Macpherson, J.A., Rupp, S., Stolp, B., Stein, J.V., Stecher, B., Sauer, U., McCoy, K.D., Macpherson, A.J., The outer mucus layer hosts a distinct intestinal microbial niche. Nat. Commun., 6, 2015, 8292.
-
(2015)
Nat. Commun.
, vol.6
, pp. 8292
-
-
Li, H.1
Limenitakis, J.P.2
Fuhrer, T.3
Geuking, M.B.4
Lawson, M.A.5
Wyss, M.6
Brugiroux, S.7
Keller, I.8
Macpherson, J.A.9
Rupp, S.10
Stolp, B.11
Stein, J.V.12
Stecher, B.13
Sauer, U.14
McCoy, K.D.15
Macpherson, A.J.16
-
73
-
-
3543130182
-
Effect of the Escherichia coli EMO strain on experimental infection by Salmonella enterica serovar Typhimurium in gnotobiotic mice
-
Lima-Filho, J.V., Vieira, L.Q., Arantes, R.M., Nicoli, J.R., Effect of the Escherichia coli EMO strain on experimental infection by Salmonella enterica serovar Typhimurium in gnotobiotic mice. Braz. J. Med. Biol. Res. 37 (2004), 1005–1013.
-
(2004)
Braz. J. Med. Biol. Res.
, vol.37
, pp. 1005-1013
-
-
Lima-Filho, J.V.1
Vieira, L.Q.2
Arantes, R.M.3
Nicoli, J.R.4
-
74
-
-
84875366034
-
The role of biogeography in shaping diversity of the intestinal microbiota in house mice
-
Linnenbrink, M., Wang, J., Hardouin, E.A., Kunzel, S., Metzler, D., Baines, J.F., The role of biogeography in shaping diversity of the intestinal microbiota in house mice. Mol. Ecol. 22 (2013), 1904–1916.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 1904-1916
-
-
Linnenbrink, M.1
Wang, J.2
Hardouin, E.A.3
Kunzel, S.4
Metzler, D.5
Baines, J.F.6
-
75
-
-
84908608590
-
The gut microbiota, bacterial metabolites and colorectal cancer
-
Louis, P., Hold, G.L., Flint, H.J., The gut microbiota, bacterial metabolites and colorectal cancer. Nat. Rev. Microbiol. 12 (2014), 661–672.
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 661-672
-
-
Louis, P.1
Hold, G.L.2
Flint, H.J.3
-
76
-
-
84928881439
-
Standardised animal models of host microbial mutualism
-
Macpherson, A.J., McCoy, K.D., Standardised animal models of host microbial mutualism. Mucosal Immunol. 8 (2015), 476–486.
-
(2015)
Mucosal Immunol.
, vol.8
, pp. 476-486
-
-
Macpherson, A.J.1
McCoy, K.D.2
-
77
-
-
1542618118
-
Induction of protective IgA by intestinal dendritic cells carrying commensal bacteria
-
Macpherson, A.J., Uhr, T., Induction of protective IgA by intestinal dendritic cells carrying commensal bacteria. Science 303 (2004), 1662–1665.
-
(2004)
Science
, vol.303
, pp. 1662-1665
-
-
Macpherson, A.J.1
Uhr, T.2
-
78
-
-
65249149643
-
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
-
Mahowald, M.A., Rey, F.E., Seedorf, H., Turnbaugh, P.J., Fulton, R.S., Wollam, A., Shah, N., Wang, C., Magrini, V., Wilson, R.K., Cantarel, B.L., Coutinho, P.M., Henrissat, B., Crock, L.W., Russell, A., Verberkmoes, N.C., Hettich, R.L., Gordon, J.I., Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc. Natl. Acad. Sci. U.S.A. 106 (2009), 5859–5864.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 5859-5864
-
-
Mahowald, M.A.1
Rey, F.E.2
Seedorf, H.3
Turnbaugh, P.J.4
Fulton, R.S.5
Wollam, A.6
Shah, N.7
Wang, C.8
Magrini, V.9
Wilson, R.K.10
Cantarel, B.L.11
Coutinho, P.M.12
Henrissat, B.13
Crock, L.W.14
Russell, A.15
Verberkmoes, N.C.16
Hettich, R.L.17
Gordon, J.I.18
-
79
-
-
84884671077
-
A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice
-
Marcobal, A., Kashyap, P.C., Nelson, T.A., Aronov, P.A., Donia, M.S., Spormann, A., Fischbach, M.A., Sonnenburg, J.L., A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice. ISME J. 7 (2013), 1933–1943.
-
(2013)
ISME J.
, vol.7
, pp. 1933-1943
-
-
Marcobal, A.1
Kashyap, P.C.2
Nelson, T.A.3
Aronov, P.A.4
Donia, M.S.5
Spormann, A.6
Fischbach, M.A.7
Sonnenburg, J.L.8
-
80
-
-
84934312516
-
Metabolome progression during early gut microbial colonization of gnotobiotic mice
-
Marcobal, A., Yusufaly, T., Higginbottom, S., Snyder, M., Sonnenburg, J.L., Mias, G.I., Metabolome progression during early gut microbial colonization of gnotobiotic mice. Sci. Rep., 5, 2015, 11589.
-
(2015)
Sci. Rep.
, vol.5
, pp. 11589
-
-
Marcobal, A.1
Yusufaly, T.2
Higginbottom, S.3
Snyder, M.4
Sonnenburg, J.L.5
Mias, G.I.6
-
81
-
-
84946229508
-
Administration of defined microbiota is protective in a murine Salmonella infection model
-
Martz, S.L., McDonald, J.A., Sun, J., Zhang, Y.G., Gloor, G.B., Noordhof, C., He, S.M., Gerbaba, T.K., Blennerhassett, M., Hurlbut, D.J., Allen-Vercoe, E., Claud, E.C., Petrof, E.O., Administration of defined microbiota is protective in a murine Salmonella infection model. Sci. Rep., 5, 2015, 16094.
-
(2015)
Sci. Rep.
, vol.5
, pp. 16094
-
-
Martz, S.L.1
McDonald, J.A.2
Sun, J.3
Zhang, Y.G.4
Gloor, G.B.5
Noordhof, C.6
He, S.M.7
Gerbaba, T.K.8
Blennerhassett, M.9
Hurlbut, D.J.10
Allen-Vercoe, E.11
Claud, E.C.12
Petrof, E.O.13
-
82
-
-
84945485419
-
Marked seasonal variation in the wild mouse gut microbiota
-
Maurice, C.F., Knowles, S.C., Ladau, J., Pollard, K.S., Fenton, A., Pedersen, A.B., Turnbaugh, P.J., Marked seasonal variation in the wild mouse gut microbiota. ISME J. 9 (2015), 2423–2434.
-
(2015)
ISME J.
, vol.9
, pp. 2423-2434
-
-
Maurice, C.F.1
Knowles, S.C.2
Ladau, J.3
Pollard, K.S.4
Fenton, A.5
Pedersen, A.B.6
Turnbaugh, P.J.7
-
83
-
-
45549091087
-
Capsular polysaccharides of symbiotic bacteria modulate immune responses during experimental colitis
-
Mazmanian, S.K., Capsular polysaccharides of symbiotic bacteria modulate immune responses during experimental colitis. J. Pediatr. Gastroenterol. Nutr. 46:Suppl. 1 (2008), E11–E12.
-
(2008)
J. Pediatr. Gastroenterol. Nutr.
, vol.46
, pp. E11-E12
-
-
Mazmanian, S.K.1
-
84
-
-
22144490199
-
An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
-
Mazmanian, S.K., Liu, C.H., Tzianabos, A.O., Kasper, D.L., An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122 (2005), 107–118.
-
(2005)
Cell
, vol.122
, pp. 107-118
-
-
Mazmanian, S.K.1
Liu, C.H.2
Tzianabos, A.O.3
Kasper, D.L.4
-
85
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
Mazmanian, S.K., Round, J.L., Kasper, D.L., A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453 (2008), 620–625.
-
(2008)
Nature
, vol.453
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
86
-
-
84883154681
-
Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome
-
McNulty, N.P., Wu, M., Erickson, A.R., Pan, C., Erickson, B.K., Martens, E.C., Pudlo, N.A., Muegge, B.D., Henrissat, B., Hettich, R.L., Gordon, J.I., Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. PLoS Biol., 11, 2013, e1001637.
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001637
-
-
McNulty, N.P.1
Wu, M.2
Erickson, A.R.3
Pan, C.4
Erickson, B.K.5
Martens, E.C.6
Pudlo, N.A.7
Muegge, B.D.8
Henrissat, B.9
Hettich, R.L.10
Gordon, J.I.11
-
87
-
-
80054960299
-
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
-
McNulty, N.P., Yatsunenko, T., Hsiao, A., Faith, J.J., Muegge, B.D., Goodman, A.L., Henrissat, B., Oozeer, R., Cools-Portier, S., Gobert, G., Chervaux, C., Knights, D., Lozupone, C.A., Knight, R., Duncan, A.E., Bain, J.R., Muehlbauer, M.J., Newgard, C.B., Heath, A.C., Gordon, J.I., The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci. Transl. Med., 3(106), 2011, ra106.
-
(2011)
Sci. Transl. Med.
, vol.3
, Issue.106
, pp. ra106
-
-
McNulty, N.P.1
Yatsunenko, T.2
Hsiao, A.3
Faith, J.J.4
Muegge, B.D.5
Goodman, A.L.6
Henrissat, B.7
Oozeer, R.8
Cools-Portier, S.9
Gobert, G.10
Chervaux, C.11
Knights, D.12
Lozupone, C.A.13
Knight, R.14
Duncan, A.E.15
Bain, J.R.16
Muehlbauer, M.J.17
Newgard, C.B.18
Heath, A.C.19
Gordon, J.I.20
more..
-
88
-
-
1342303482
-
Of mice and not men: differences between mouse and human immunology
-
Mestas, J., Hughes, C.C., Of mice and not men: differences between mouse and human immunology. J. Immunol. 172 (2004), 2731–2738.
-
(2004)
J. Immunol.
, vol.172
, pp. 2731-2738
-
-
Mestas, J.1
Hughes, C.C.2
-
89
-
-
18844478880
-
The influence of antibiotics upon microflora-associated characteristics in man and mammals
-
Midtvedt, T., Bjorneklett, A., Carlstedt-Duke, B., Gustafsson, B.E., Hoverstad, T., Lingaas, E., Norin, K.E., Saxerholt, H., Steinbakk, M., The influence of antibiotics upon microflora-associated characteristics in man and mammals. Prog. Clin. Biol. Res. 181 (1985), 241–244.
-
(1985)
Prog. Clin. Biol. Res.
, vol.181
, pp. 241-244
-
-
Midtvedt, T.1
Bjorneklett, A.2
Carlstedt-Duke, B.3
Gustafsson, B.E.4
Hoverstad, T.5
Lingaas, E.6
Norin, K.E.7
Saxerholt, H.8
Steinbakk, M.9
-
90
-
-
84928775824
-
Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii
-
Miquel, S., Leclerc, M., Martin, R., Chain, F., Lenoir, M., Raguideau, S., Hudault, S., Bridonneau, C., Northen, T., Bowen, B., Bermudez-Humaran, L.G., Sokol, H., Thomas, M., Langella, P., Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii. MBio 6 (2015), e00300–e00315.
-
(2015)
MBio
, vol.6
, pp. e00300-e00315
-
-
Miquel, S.1
Leclerc, M.2
Martin, R.3
Chain, F.4
Lenoir, M.5
Raguideau, S.6
Hudault, S.7
Bridonneau, C.8
Northen, T.9
Bowen, B.10
Bermudez-Humaran, L.G.11
Sokol, H.12
Thomas, M.13
Langella, P.14
-
91
-
-
0016167941
-
Human fecal flora: the normal flora of 20 Japanese-Hawaiians
-
Moore, W.E., Holdeman, L.V., Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl. Microbiol. 27 (1974), 961–979.
-
(1974)
Appl. Microbiol.
, vol.27
, pp. 961-979
-
-
Moore, W.E.1
Holdeman, L.V.2
-
92
-
-
84928704650
-
Commensal-dendritic-cell interaction specifies a unique protective skin immune signature
-
Naik, S., Bouladoux, N., Linehan, J.L., Han, S.J., Harrison, O.J., Wilhelm, C., Conlan, S., Himmelfarb, S., Byrd, A.L., Deming, C., Quinones, M., Brenchley, J.M., Kong, H.H., Tussiwand, R., Murphy, K.M., Merad, M., Segre, J.A., Belkaid, Y., Commensal-dendritic-cell interaction specifies a unique protective skin immune signature. Nature 520 (2015), 104–108.
-
(2015)
Nature
, vol.520
, pp. 104-108
-
-
Naik, S.1
Bouladoux, N.2
Linehan, J.L.3
Han, S.J.4
Harrison, O.J.5
Wilhelm, C.6
Conlan, S.7
Himmelfarb, S.8
Byrd, A.L.9
Deming, C.10
Quinones, M.11
Brenchley, J.M.12
Kong, H.H.13
Tussiwand, R.14
Murphy, K.M.15
Merad, M.16
Segre, J.A.17
Belkaid, Y.18
-
93
-
-
84885573828
-
Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens
-
Ng, K.M., Ferreyra, J.A., Higginbottom, S.K., Lynch, J.B., Kashyap, P.C., Gopinath, S., Naidu, N., Choudhury, B., Weimer, B.C., Monack, D.M., Sonnenburg, J.L., Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature 502 (2013), 96–99.
-
(2013)
Nature
, vol.502
, pp. 96-99
-
-
Ng, K.M.1
Ferreyra, J.A.2
Higginbottom, S.K.3
Lynch, J.B.4
Kashyap, P.C.5
Gopinath, S.6
Naidu, N.7
Choudhury, B.8
Weimer, B.C.9
Monack, D.M.10
Sonnenburg, J.L.11
-
94
-
-
84920404296
-
How informative is the mouse for human gut microbiota research?
-
Nguyen, T.L., Vieira-Silva, S., Liston, A., Raes, J., How informative is the mouse for human gut microbiota research?. Dis. Model Mech. 8 (2015), 1–16.
-
(2015)
Dis. Model Mech.
, vol.8
, pp. 1-16
-
-
Nguyen, T.L.1
Vieira-Silva, S.2
Liston, A.3
Raes, J.4
-
95
-
-
84942072184
-
Thieresches Leben ohne Bakterien im Verdauungskanal
-
Nuttal, G.H.F., Thierfelder, H., Thieresches Leben ohne Bakterien im Verdauungskanal. Z. Physiol. Chem. 21 (1895), 109–121.
-
(1895)
Z. Physiol. Chem.
, vol.21
, pp. 109-121
-
-
Nuttal, G.H.F.1
Thierfelder, H.2
-
96
-
-
78649978358
-
Evolutionary relationships of wild hominids recapitulated by gut microbial communities
-
Ochman, H., Worobey, M., Kuo, C.H., Ndjango, J.B., Peeters, M., Hahn, B.H., Hugenholtz, P., Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol., 8, 2010, e1000546.
-
(2010)
PLoS Biol.
, vol.8
, pp. e1000546
-
-
Ochman, H.1
Worobey, M.2
Kuo, C.H.3
Ndjango, J.B.4
Peeters, M.5
Hahn, B.H.6
Hugenholtz, P.7
-
97
-
-
84936769359
-
Surface-associated lipoproteins link Enterococcus faecalis virulence to colitogenic activity in IL-10-deficient mice independent of their expression levels
-
Ocvirk, S., Sava, I.G., Lengfelder, I., Lagkouvardos, I., Steck, N., Roh, J.H., Tchaptchet, S., Bao, Y., Hansen, J.J., Huebner, J., Carroll, I.M., Murray, B.E., Sartor, R.B., Haller, D., Surface-associated lipoproteins link Enterococcus faecalis virulence to colitogenic activity in IL-10-deficient mice independent of their expression levels. PLoS Pathog., 11, 2015, e1004911.
-
(2015)
PLoS Pathog.
, vol.11
, pp. e1004911
-
-
Ocvirk, S.1
Sava, I.G.2
Lengfelder, I.3
Lagkouvardos, I.4
Steck, N.5
Roh, J.H.6
Tchaptchet, S.7
Bao, Y.8
Hansen, J.J.9
Huebner, J.10
Carroll, I.M.11
Murray, B.E.12
Sartor, R.B.13
Haller, D.14
-
98
-
-
0002274807
-
Development of an “Altered Schaedler Flora” for the generation of NCI gnotobiotic rodents
-
Orcutt, R.P., Gianni, F.J., Judge, R.J., Development of an “Altered Schaedler Flora” for the generation of NCI gnotobiotic rodents. Microecol. Ther., 17, 1987, 59.
-
(1987)
Microecol. Ther.
, vol.17
, pp. 59
-
-
Orcutt, R.P.1
Gianni, F.J.2
Judge, R.J.3
-
99
-
-
79960931485
-
Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies
-
Pope, P.B., Smith, W., Denman, S.E., Tringe, S.G., Barry, K., Hugenholtz, P., McSweeney, C.S., McHardy, A.C., Morrison, M., Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies. Science 333 (2011), 646–648.
-
(2011)
Science
, vol.333
, pp. 646-648
-
-
Pope, P.B.1
Smith, W.2
Denman, S.E.3
Tringe, S.G.4
Barry, K.5
Hugenholtz, P.6
McSweeney, C.S.7
McHardy, A.C.8
Morrison, M.9
-
100
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K.S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., Yamada, T., Mende, D.R., Li, J., Xu, J., Li, S., Li, D., Cao, J., Wang, B., Liang, H., Zheng, H., Xie, Y., Tap, J., Lepage, P., Bertalan, M., Batto, J.M., Hansen, T., Le Paslier, D., Linneberg, A., Nielsen, H.B., Pelletier, E., Renault, P., Sicheritz-Ponten, T., Turner, K., Zhu, H., Yu, C., Jian, M., Zhou, Y., Li, Y., Zhang, X., Qin, N., Yang, H., Wang, J., Brunak, S., Dore, J., Guarner, F., Kristiansen, K., Pedersen, O., Parkhill, J., Weissenbach, J., Bork, P., Ehrlich, S.D., A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464 (2010), 59–65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
Sicheritz-Ponten, T.31
Turner, K.32
Zhu, H.33
Yu, C.34
Jian, M.35
Zhou, Y.36
Li, Y.37
Zhang, X.38
Qin, N.39
Yang, H.40
Wang, J.41
Brunak, S.42
Dore, J.43
Guarner, F.44
Kristiansen, K.45
Pedersen, O.46
Parkhill, J.47
Weissenbach, J.48
Bork, P.49
Ehrlich, S.D.50
more..
-
101
-
-
82755168804
-
Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype
-
Rausch, P., Rehman, A., Kunzel, S., Hasler, R., Ott, S.J., Schreiber, S., Rosenstiel, P., Franke, A., Baines, J.F., Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proc. Natl. Acad. Sci. U.S.A. 108 (2011), 19030–19035.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 19030-19035
-
-
Rausch, P.1
Rehman, A.2
Kunzel, S.3
Hasler, R.4
Ott, S.J.5
Schreiber, S.6
Rosenstiel, P.7
Franke, A.8
Baines, J.F.9
-
102
-
-
33749997498
-
Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
-
Rawls, J.F., Mahowald, M.A., Ley, R.E., Gordon, J.I., Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell 127 (2006), 423–433.
-
(2006)
Cell
, vol.127
, pp. 423-433
-
-
Rawls, J.F.1
Mahowald, M.A.2
Ley, R.E.3
Gordon, J.I.4
-
103
-
-
84907323900
-
Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
-
Rettedal, E.A., Gumpert, H., Sommer, M.O., Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria. Nat. Commun., 5, 2014, 4714.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4714
-
-
Rettedal, E.A.1
Gumpert, H.2
Sommer, M.O.3
-
104
-
-
77954566982
-
Dissecting the in vivo metabolic potential of two human gut acetogens
-
Rey, F.E., Faith, J.J., Bain, J., Muehlbauer, M.J., Stevens, R.D., Newgard, C.B., Gordon, J.I., Dissecting the in vivo metabolic potential of two human gut acetogens. J. Biol. Chem. 285 (2010), 22082–22090.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 22082-22090
-
-
Rey, F.E.1
Faith, J.J.2
Bain, J.3
Muehlbauer, M.J.4
Stevens, R.D.5
Newgard, C.B.6
Gordon, J.I.7
-
105
-
-
84882312793
-
Metabolic niche of a prominent sulfate-reducing human gut bacterium
-
Rey, F.E., Gonzalez, M.D., Cheng, J., Wu, M., Ahern, P.P., Gordon, J.I., Metabolic niche of a prominent sulfate-reducing human gut bacterium. Proc. Natl. Acad. Sci. U.S.A. 110 (2013), 13582–13587.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 13582-13587
-
-
Rey, F.E.1
Gonzalez, M.D.2
Cheng, J.3
Wu, M.4
Ahern, P.P.5
Gordon, J.I.6
-
106
-
-
84883478660
-
Gut microbiota from twins discordant for obesity modulate metabolism in mice
-
Ridaura, V.K., Faith, J.J., Rey, F.E., Cheng, J., Duncan, A.E., Kau, A.L., Griffin, N.W., Lombard, V., Henrissat, B., Bain, J.R., Muehlbauer, M.J., Ilkayeva, O., Semenkovich, C.F., Funai, K., Hayashi, D.K., Lyle, B.J., Martini, M.C., Ursell, L.K., Clemente, J.C., Van Treuren, W., Walters, W.A., Knight, R., Newgard, C.B., Heath, A.C., Gordon, J.I., Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science, 341, 2013, 1241214.
-
(2013)
Science
, vol.341
, pp. 1241214
-
-
Ridaura, V.K.1
Faith, J.J.2
Rey, F.E.3
Cheng, J.4
Duncan, A.E.5
Kau, A.L.6
Griffin, N.W.7
Lombard, V.8
Henrissat, B.9
Bain, J.R.10
Muehlbauer, M.J.11
Ilkayeva, O.12
Semenkovich, C.F.13
Funai, K.14
Hayashi, D.K.15
Lyle, B.J.16
Martini, M.C.17
Ursell, L.K.18
Clemente, J.C.19
Van Treuren, W.20
Walters, W.A.21
Knight, R.22
Newgard, C.B.23
Heath, A.C.24
Gordon, J.I.25
more..
-
107
-
-
84947202455
-
The human gut sterolbiome: bile acid-microbiome endocrine aspects and therapeutics
-
Ridlon, J.M., Bajaj, J.S., The human gut sterolbiome: bile acid-microbiome endocrine aspects and therapeutics. Acta Pharm. Sin., B 5 (2015), 99–105.
-
(2015)
Acta Pharm. Sin., B
, vol.5
, pp. 99-105
-
-
Ridlon, J.M.1
Bajaj, J.S.2
-
108
-
-
19544388278
-
Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents
-
Robertson, B.R., O'Rourke, J.L., Neilan, B.A., Vandamme, P., On, S.L., Fox, J.G., Lee, A., Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents. Int. J. Syst. Evol. Microbiol. 55 (2005), 1199–1204.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 1199-1204
-
-
Robertson, B.R.1
O'Rourke, J.L.2
Neilan, B.A.3
Vandamme, P.4
On, S.L.5
Fox, J.G.6
Lee, A.7
-
109
-
-
79956311926
-
The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota
-
Round, J.L., Lee, S.M., Li, J., Tran, G., Jabri, B., Chatila, T.A., Mazmanian, S.K., The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota. Science 332 (2011), 974–977.
-
(2011)
Science
, vol.332
, pp. 974-977
-
-
Round, J.L.1
Lee, S.M.2
Li, J.3
Tran, G.4
Jabri, B.5
Chatila, T.A.6
Mazmanian, S.K.7
-
110
-
-
74049122536
-
Enteric defensins are essential regulators of intestinal microbial ecology
-
Salzman, N.H., Hung, K., Haribhai, D., Chu, H., Karlsson-Sjoberg, J., Amir, E., Teggatz, P., Barman, M., Hayward, M., Eastwood, D., Stoel, M., Zhou, Y., Sodergren, E., Weinstock, G.M., Bevins, C.L., Williams, C.B., Bos, N.A., Enteric defensins are essential regulators of intestinal microbial ecology. Nat. Immunol. 11 (2010), 76–83.
-
(2010)
Nat. Immunol.
, vol.11
, pp. 76-83
-
-
Salzman, N.H.1
Hung, K.2
Haribhai, D.3
Chu, H.4
Karlsson-Sjoberg, J.5
Amir, E.6
Teggatz, P.7
Barman, M.8
Hayward, M.9
Eastwood, D.10
Stoel, M.11
Zhou, Y.12
Sodergren, E.13
Weinstock, G.M.14
Bevins, C.L.15
Williams, C.B.16
Bos, N.A.17
-
111
-
-
84929310699
-
Control of brain development, function, and behavior by the microbiome
-
Sampson, T.R., Mazmanian, S.K., Control of brain development, function, and behavior by the microbiome. Cell Host Microbe 17 (2015), 565–576.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 565-576
-
-
Sampson, T.R.1
Mazmanian, S.K.2
-
112
-
-
33745610880
-
A humanized gnotobiotic mouse model of host–archaeal–bacterial mutualism
-
Samuel, B.S., Gordon, J.I., A humanized gnotobiotic mouse model of host–archaeal–bacterial mutualism. Proc. Natl. Acad. Sci. U.S.A. 103 (2006), 10011–10016.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 10011-10016
-
-
Samuel, B.S.1
Gordon, J.I.2
-
113
-
-
84873342775
-
Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring FXR antagonist
-
Sayin, S.I., Wahlstrom, A., Felin, J., Jantti, S., Marschall, H.U., Bamberg, K., Angelin, B., Hyotylainen, T., Oresic, M., Backhed, F., Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring FXR antagonist. Cell Metab. 17 (2013), 225–235.
-
(2013)
Cell Metab.
, vol.17
, pp. 225-235
-
-
Sayin, S.I.1
Wahlstrom, A.2
Felin, J.3
Jantti, S.4
Marschall, H.U.5
Bamberg, K.6
Angelin, B.7
Hyotylainen, T.8
Oresic, M.9
Backhed, F.10
-
114
-
-
78651189876
-
Association of germfree mice with bacteria isolated from normal mice
-
Schaedler, R.W., Dubs, R., Costello, R., Association of germfree mice with bacteria isolated from normal mice. J. Exp. Med. 122 (1965), 77–82.
-
(1965)
J. Exp. Med.
, vol.122
, pp. 77-82
-
-
Schaedler, R.W.1
Dubs, R.2
Costello, R.3
-
115
-
-
84926360580
-
Growth and host interaction of mouse segmented filamentous bacteria in vitro
-
Schnupf, P., Gaboriau-Routhiau, V., Gros, M., Friedman, R., Moya-Nilges, M., Nigro, G., Cerf-Bensussan, N., Sansonetti, P.J., Growth and host interaction of mouse segmented filamentous bacteria in vitro. Nature 520 (2015), 99–103.
-
(2015)
Nature
, vol.520
, pp. 99-103
-
-
Schnupf, P.1
Gaboriau-Routhiau, V.2
Gros, M.3
Friedman, R.4
Moya-Nilges, M.5
Nigro, G.6
Cerf-Bensussan, N.7
Sansonetti, P.J.8
-
116
-
-
84857088288
-
Dextran sodium sulfate-induced inflammation alters the expression of proteins by intestinal Escherichia coli strains in a gnotobiotic mouse model
-
Schumann, S., Alpert, C., Engst, W., Loh, G., Blaut, M., Dextran sodium sulfate-induced inflammation alters the expression of proteins by intestinal Escherichia coli strains in a gnotobiotic mouse model. Appl. Environ. Microbiol. 78 (2012), 1513–1522.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 1513-1522
-
-
Schumann, S.1
Alpert, C.2
Engst, W.3
Loh, G.4
Blaut, M.5
-
117
-
-
84916884469
-
Bacteria from diverse habitats colonize and compete in the mouse gut
-
Seedorf, H., Griffin, N.W., Ridaura, V.K., Reyes, A., Cheng, J., Rey, F.E., Smith, M.I., Simon, G.M., Scheffrahn, R.H., Woebken, D., Spormann, A.M., Van Treuren, W., Ursell, L.K., Pirrung, M., Robbins-Pianka, A., Cantarel, B.L., Lombard, V., Henrissat, B., Knight, R., Gordon, J.I., Bacteria from diverse habitats colonize and compete in the mouse gut. Cell 159 (2014), 253–266.
-
(2014)
Cell
, vol.159
, pp. 253-266
-
-
Seedorf, H.1
Griffin, N.W.2
Ridaura, V.K.3
Reyes, A.4
Cheng, J.5
Rey, F.E.6
Smith, M.I.7
Simon, G.M.8
Scheffrahn, R.H.9
Woebken, D.10
Spormann, A.M.11
Van Treuren, W.12
Ursell, L.K.13
Pirrung, M.14
Robbins-Pianka, A.15
Cantarel, B.L.16
Lombard, V.17
Henrissat, B.18
Knight, R.19
Gordon, J.I.20
more..
-
118
-
-
84940077758
-
MUCOSAL IMMUNOLOGY. Individual intestinal symbionts induce a distinct population of RORgamma(+) regulatory T cells
-
Sefik, E., Geva-Zatorsky, N., Oh, S., Konnikova, L., Zemmour, D., McGuire, A.M., Burzyn, D., Ortiz-Lopez, A., Lobera, M., Yang, J., Ghosh, S., Earl, A., Snapper, S.B., Jupp, R., Kasper, D., Mathis, D., Benoist, C., MUCOSAL IMMUNOLOGY. Individual intestinal symbionts induce a distinct population of RORgamma(+) regulatory T cells. Science 349 (2015), 993–997.
-
(2015)
Science
, vol.349
, pp. 993-997
-
-
Sefik, E.1
Geva-Zatorsky, N.2
Oh, S.3
Konnikova, L.4
Zemmour, D.5
McGuire, A.M.6
Burzyn, D.7
Ortiz-Lopez, A.8
Lobera, M.9
Yang, J.10
Ghosh, S.11
Earl, A.12
Snapper, S.B.13
Jupp, R.14
Kasper, D.15
Mathis, D.16
Benoist, C.17
-
119
-
-
33845508443
-
Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host
-
Sonnenburg, J.L., Chen, C.T., Gordon, J.I., Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol., 4, 2006, e413.
-
(2006)
PLoS Biol.
, vol.4
, pp. e413
-
-
Sonnenburg, J.L.1
Chen, C.T.2
Gordon, J.I.3
-
120
-
-
15544376418
-
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
-
Sonnenburg, J.L., Xu, J., Leip, D.D., Chen, C.H., Westover, B.P., Weatherford, J., Buhler, J.D., Gordon, J.I., Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307 (2005), 1955–1959.
-
(2005)
Science
, vol.307
, pp. 1955-1959
-
-
Sonnenburg, J.L.1
Xu, J.2
Leip, D.D.3
Chen, C.H.4
Westover, B.P.5
Weatherford, J.6
Buhler, J.D.7
Gordon, J.I.8
-
121
-
-
84862623932
-
Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
-
Staubach, F., Kunzel, S., Baines, A.C., Yee, A., McGee, B.M., Backhed, F., Baines, J.F., Johnsen, J.M., Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. ISME J. 6 (2012), 1345–1355.
-
(2012)
ISME J.
, vol.6
, pp. 1345-1355
-
-
Staubach, F.1
Kunzel, S.2
Baines, A.C.3
Yee, A.4
McGee, B.M.5
Backhed, F.6
Baines, J.F.7
Johnsen, J.M.8
-
122
-
-
84876408419
-
’Blooming’ in the gut: how dysbiosis might contribute to pathogen evolution
-
Stecher, B., Maier, L., Hardt, W.D., ’Blooming’ in the gut: how dysbiosis might contribute to pathogen evolution. Nat. Rev. Microbiol. 11 (2013), 277–284.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 277-284
-
-
Stecher, B.1
Maier, L.2
Hardt, W.D.3
-
123
-
-
80052130713
-
Enterococcus faecalis metalloprotease compromises epithelial barrier and contributes to intestinal inflammation
-
Steck, N., Hoffmann, M., Sava, I.G., Kim, S.C., Hahne, H., Tonkonogy, S.L., Mair, K., Krueger, D., Pruteanu, M., Shanahan, F., Vogelmann, R., Schemann, M., Kuster, B., Sartor, R.B., Haller, D., Enterococcus faecalis metalloprotease compromises epithelial barrier and contributes to intestinal inflammation. Gastroenterology 141 (2011), 959–971.
-
(2011)
Gastroenterology
, vol.141
, pp. 959-971
-
-
Steck, N.1
Hoffmann, M.2
Sava, I.G.3
Kim, S.C.4
Hahne, H.5
Tonkonogy, S.L.6
Mair, K.7
Krueger, D.8
Pruteanu, M.9
Shanahan, F.10
Vogelmann, R.11
Schemann, M.12
Kuster, B.13
Sartor, R.B.14
Haller, D.15
-
124
-
-
84903134830
-
Persistent gut microbiota immaturity in malnourished Bangladeshi children
-
Subramanian, S., Huq, S., Yatsunenko, T., Haque, R., Mahfuz, M., Alam, M.A., Benezra, A., DeStefano, J., Meier, M.F., Muegge, B.D., Barratt, M.J., VanArendonk, L.G., Zhang, Q., Province, M.A., Petri, W.A. Jr., Ahmed, T., Gordon, J.I., Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature 510 (2014), 417–421.
-
(2014)
Nature
, vol.510
, pp. 417-421
-
-
Subramanian, S.1
Huq, S.2
Yatsunenko, T.3
Haque, R.4
Mahfuz, M.5
Alam, M.A.6
Benezra, A.7
DeStefano, J.8
Meier, M.F.9
Muegge, B.D.10
Barratt, M.J.11
VanArendonk, L.G.12
Zhang, Q.13
Province, M.A.14
Petri, W.A.15
Ahmed, T.16
Gordon, J.I.17
-
125
-
-
84958241663
-
The human gut mycobiome: pitfalls and potentials-a mycologist's perspective
-
Suhr, M.J., Hallen-Adams, H.E., The human gut mycobiome: pitfalls and potentials-a mycologist's perspective. Mycologia 107 (2015), 1057–1073.
-
(2015)
Mycologia
, vol.107
, pp. 1057-1073
-
-
Suhr, M.J.1
Hallen-Adams, H.E.2
-
126
-
-
2942545832
-
The effect of probiotic treatment with Clostridium butyricum on enterohemorrhagic Escherichia coli O157:H7 infection in mice
-
Takahashi, M., Taguchi, H., Yamaguchi, H., Osaki, T., Komatsu, A., Kamiya, S., The effect of probiotic treatment with Clostridium butyricum on enterohemorrhagic Escherichia coli O157:H7 infection in mice. FEMS Immunol. Med. Microbiol. 41 (2004), 219–226.
-
(2004)
FEMS Immunol. Med. Microbiol.
, vol.41
, pp. 219-226
-
-
Takahashi, M.1
Taguchi, H.2
Yamaguchi, H.3
Osaki, T.4
Komatsu, A.5
Kamiya, S.6
-
127
-
-
0003944936
-
Normal Microflora
-
Chapman & Hall London
-
Tannock, G.W., Normal Microflora. 1995, Chapman & Hall, London.
-
(1995)
-
-
Tannock, G.W.1
-
128
-
-
0000121910
-
Flexible film apparatus for the rearing and use of germfree animals
-
Trexler, P.C., Reynolds, L.I., Flexible film apparatus for the rearing and use of germfree animals. Appl. Microbiol. 5 (1957), 406–412.
-
(1957)
Appl. Microbiol.
, vol.5
, pp. 406-412
-
-
Trexler, P.C.1
Reynolds, L.I.2
-
129
-
-
77950669604
-
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
-
Turnbaugh, P.J., Ridaura, V.K., Faith, J.J., Rey, F.E., Knight, R., Gordon, J.I., The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci. Transl. Med., 1, 2009, 6ra14.
-
(2009)
Sci. Transl. Med.
, vol.1
, pp. 6ra14
-
-
Turnbaugh, P.J.1
Ridaura, V.K.2
Faith, J.J.3
Rey, F.E.4
Knight, R.5
Gordon, J.I.6
-
130
-
-
84955253870
-
In vitro cultivation of ‘unculturable’ oral bacteria, facilitated by community culture and media supplementation with siderophores
-
Vartoukian, S.R., Adamowska, A., Lawlor, M., Moazzez, R., Dewhirst, F.E., Wade, W.G., In vitro cultivation of ‘unculturable’ oral bacteria, facilitated by community culture and media supplementation with siderophores. PLoS ONE, 11, 2016, e0146926.
-
(2016)
PLoS ONE
, vol.11
, pp. e0146926
-
-
Vartoukian, S.R.1
Adamowska, A.2
Lawlor, M.3
Moazzez, R.4
Dewhirst, F.E.5
Wade, W.G.6
-
131
-
-
84948461699
-
Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota
-
Vetizou, M., Pitt, J.M., Daillere, R., Lepage, P., Waldschmitt, N., Flament, C., Rusakiewicz, S., Routy, B., Roberti, M.P., Duong, C.P., Poirier-Colame, V., Roux, A., Becharef, S., Formenti, S., Golden, E., Cording, S., Eberl, G., Schlitzer, A., Ginhoux, F., Mani, S., Yamazaki, T., Jacquelot, N., Enot, D.P., Berard, M., Nigou, J., Opolon, P., Eggermont, A., Woerther, P.L., Chachaty, E., Chaput, N., Robert, C., Mateus, C., Kroemer, G., Raoult, D., Boneca, I.G., Carbonnel, F., Chamaillard, M., Zitvogel, L., Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota. Science 350 (2015), 1079–1084.
-
(2015)
Science
, vol.350
, pp. 1079-1084
-
-
Vetizou, M.1
Pitt, J.M.2
Daillere, R.3
Lepage, P.4
Waldschmitt, N.5
Flament, C.6
Rusakiewicz, S.7
Routy, B.8
Roberti, M.P.9
Duong, C.P.10
Poirier-Colame, V.11
Roux, A.12
Becharef, S.13
Formenti, S.14
Golden, E.15
Cording, S.16
Eberl, G.17
Schlitzer, A.18
Ginhoux, F.19
Mani, S.20
Yamazaki, T.21
Jacquelot, N.22
Enot, D.P.23
Berard, M.24
Nigou, J.25
Opolon, P.26
Eggermont, A.27
Woerther, P.L.28
Chachaty, E.29
Chaput, N.30
Robert, C.31
Mateus, C.32
Kroemer, G.33
Raoult, D.34
Boneca, I.G.35
Carbonnel, F.36
Chamaillard, M.37
Zitvogel, L.38
more..
-
132
-
-
84897127283
-
The virome in mammalian physiology and disease
-
Virgin, H.W., The virome in mammalian physiology and disease. Cell 157 (2014), 142–150.
-
(2014)
Cell
, vol.157
, pp. 142-150
-
-
Virgin, H.W.1
-
133
-
-
0038730689
-
Bacteroides vulgatus protects against Escherichia coli-induced colitis in gnotobiotic interleukin-2-deficient mice
-
Waidmann, M., Bechtold, O., Frick, J.S., Lehr, H.A., Schubert, S., Dobrindt, U., Loeffler, J., Bohn, E., Autenrieth, I.B., Bacteroides vulgatus protects against Escherichia coli-induced colitis in gnotobiotic interleukin-2-deficient mice. Gastroenterology 125 (2003), 162–177.
-
(2003)
Gastroenterology
, vol.125
, pp. 162-177
-
-
Waidmann, M.1
Bechtold, O.2
Frick, J.S.3
Lehr, H.A.4
Schubert, S.5
Dobrindt, U.6
Loeffler, J.7
Bohn, E.8
Autenrieth, I.B.9
-
134
-
-
84924203445
-
Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome
-
Wang, J., Kalyan, S., Steck, N., Turner, L.M., Harr, B., Kunzel, S., Vallier, M., Hasler, R., Franke, A., Oberg, H.H., Ibrahim, S.M., Grassl, G.A., Kabelitz, D., Baines, J.F., Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome. Nat. Commun., 6, 2015, 6440.
-
(2015)
Nat. Commun.
, vol.6
, pp. 6440
-
-
Wang, J.1
Kalyan, S.2
Steck, N.3
Turner, L.M.4
Harr, B.5
Kunzel, S.6
Vallier, M.7
Hasler, R.8
Franke, A.9
Oberg, H.H.10
Ibrahim, S.M.11
Grassl, G.A.12
Kabelitz, D.13
Baines, J.F.14
-
135
-
-
84903722284
-
Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice
-
Wang, J., Linnenbrink, M., Kunzel, S., Fernandes, R., Nadeau, M.J., Rosenstiel, P., Baines, J.F., Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proc. Natl. Acad. Sci. U.S.A. 111 (2014), E2703–E2710.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E2703-E2710
-
-
Wang, J.1
Linnenbrink, M.2
Kunzel, S.3
Fernandes, R.4
Nadeau, M.J.5
Rosenstiel, P.6
Baines, J.F.7
-
136
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G.M., Tiedje, J.M., Cole, J.R., Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73 (2007), 5261–5267.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
137
-
-
84999054106
-
Draft genome sequences of the altered schaedler flora, a defined bacterial community from gnotobiotic mice
-
Wannemuehler, M.J., Overstreet, A.M., Ward, D.V., Phillips, G.J., Draft genome sequences of the altered schaedler flora, a defined bacterial community from gnotobiotic mice. Genome Announc. 2 (2014), e00214–e00287.
-
(2014)
Genome Announc.
, vol.2
, pp. e00214-e00287
-
-
Wannemuehler, M.J.1
Overstreet, A.M.2
Ward, D.V.3
Phillips, G.J.4
-
138
-
-
84866174523
-
Genomic approaches to studying the human microbiota
-
Weinstock, G.M., Genomic approaches to studying the human microbiota. Nature 489 (2012), 250–256.
-
(2012)
Nature
, vol.489
, pp. 250-256
-
-
Weinstock, G.M.1
-
139
-
-
84882714002
-
Plasmacytoid dendritic cells are crucial in Bifidobacterium adolescentis-mediated inhibition of Yersinia enterocolitica infection
-
Wittmann, A., Autenrieth, I.B., Frick, J.S., Plasmacytoid dendritic cells are crucial in Bifidobacterium adolescentis-mediated inhibition of Yersinia enterocolitica infection. PLoS ONE, 8, 2013, e71338.
-
(2013)
PLoS ONE
, vol.8
, pp. e71338
-
-
Wittmann, A.1
Autenrieth, I.B.2
Frick, J.S.3
-
140
-
-
84929313374
-
An integrative view of microbiome-host interactions in inflammatory bowel diseases
-
Wlodarska, M., Kostic, A.D., Xavier, R.J., An integrative view of microbiome-host interactions in inflammatory bowel diseases. Cell Host Microbe 17 (2015), 577–591.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 577-591
-
-
Wlodarska, M.1
Kostic, A.D.2
Xavier, R.J.3
-
141
-
-
84861720909
-
Comparative evaluation of establishing a human gut microbial community within rodent models
-
Wos-Oxley, M., Bleich, A., Oxley, A.P., Kahl, S., Janus, L., Smoczek, A., Nahrstedt, H., Pils, M., Taudien, S., Platzer, M., Hedrich, H.J., Medina, E., Pieper, D., Comparative evaluation of establishing a human gut microbial community within rodent models. Gut Microbes 3 (2012), 234–249.
-
(2012)
Gut Microbes
, vol.3
, pp. 234-249
-
-
Wos-Oxley, M.1
Bleich, A.2
Oxley, A.P.3
Kahl, S.4
Janus, L.5
Smoczek, A.6
Nahrstedt, H.7
Pils, M.8
Taudien, S.9
Platzer, M.10
Hedrich, H.J.11
Medina, E.12
Pieper, D.13
-
142
-
-
84908406670
-
Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models
-
Woting, A., Pfeiffer, N., Loh, G., Klaus, S., Blaut, M., Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models. MBio 5 (2014), e01514–e01530.
-
(2014)
MBio
, vol.5
, pp. e01514-e01530
-
-
Woting, A.1
Pfeiffer, N.2
Loh, G.3
Klaus, S.4
Blaut, M.5
-
143
-
-
84947983159
-
Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides
-
Wu, M., McNulty, N.P., Rodionov, D.A., Khoroshkin, M.S., Griffin, N.W., Cheng, J., Latreille, P., Kerstetter, R.A., Terrapon, N., Henrissat, B., Osterman, A.L., Gordon, J.I., Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. Science, 350, 2015, aac5992.
-
(2015)
Science
, vol.350
, pp. aac5992
-
-
Wu, M.1
McNulty, N.P.2
Rodionov, D.A.3
Khoroshkin, M.S.4
Griffin, N.W.5
Cheng, J.6
Latreille, P.7
Kerstetter, R.A.8
Terrapon, N.9
Henrissat, B.10
Osterman, A.L.11
Gordon, J.I.12
-
144
-
-
84941771586
-
The altered schaedler flora: continued applications of a defined murine microbial community
-
Wymore Brand, M., Wannemuehler, M.J., Phillips, G.J., Proctor, A., Overstreet, A.M., Jergens, A.E., Orcutt, R.P., Fox, J.G., The altered schaedler flora: continued applications of a defined murine microbial community. ILAR J. 56 (2015), 169–178.
-
(2015)
ILAR J.
, vol.56
, pp. 169-178
-
-
Wymore Brand, M.1
Wannemuehler, M.J.2
Phillips, G.J.3
Proctor, A.4
Overstreet, A.M.5
Jergens, A.E.6
Orcutt, R.P.7
Fox, J.G.8
-
145
-
-
84943607837
-
A catalog of the mouse gut metagenome
-
Xiao, L., Feng, Q., Liang, S., Sonne, S.B., Xia, Z., Qiu, X., Li, X., Long, H., Zhang, J., Zhang, D., Liu, C., Fang, Z., Chou, J., Glanville, J., Hao, Q., Kotowska, D., Colding, C., Licht, T.R., Wu, D., Yu, J., Sung, J.J., Liang, Q., Li, J., Jia, H., Lan, Z., Tremaroli, V., Dworzynski, P., Nielsen, H.B., Backhed, F., Dore, J., Le Chatelier, E., Ehrlich, S.D., Lin, J.C., Arumugam, M., Wang, J., Madsen, L., Kristiansen, K., A catalog of the mouse gut metagenome. Nat. Biotechnol. 33 (2015), 1103–1108.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1103-1108
-
-
Xiao, L.1
Feng, Q.2
Liang, S.3
Sonne, S.B.4
Xia, Z.5
Qiu, X.6
Li, X.7
Long, H.8
Zhang, J.9
Zhang, D.10
Liu, C.11
Fang, Z.12
Chou, J.13
Glanville, J.14
Hao, Q.15
Kotowska, D.16
Colding, C.17
Licht, T.R.18
Wu, D.19
Yu, J.20
Sung, J.J.21
Liang, Q.22
Li, J.23
Jia, H.24
Lan, Z.25
Tremaroli, V.26
Dworzynski, P.27
Nielsen, H.B.28
Backhed, F.29
Dore, J.30
Le Chatelier, E.31
Ehrlich, S.D.32
Lin, J.C.33
Arumugam, M.34
Wang, J.35
Madsen, L.36
Kristiansen, K.37
more..
-
146
-
-
0037470975
-
A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
-
Xu, J., Bjursell, M.K., Himrod, J., Deng, S., Carmichael, L.K., Chiang, H.C., Hooper, L.V., Gordon, J.I., A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299 (2003), 2074–2076.
-
(2003)
Science
, vol.299
, pp. 2074-2076
-
-
Xu, J.1
Bjursell, M.K.2
Himrod, J.3
Deng, S.4
Carmichael, L.K.5
Chiang, H.C.6
Hooper, L.V.7
Gordon, J.I.8
-
147
-
-
84881247044
-
Intestinal microbiota composition of interleukin-10 deficient C57BL/6J mice and susceptibility to Helicobacter hepaticus-induced colitis
-
Yang, I., Eibach, D., Kops, F., Brenneke, B., Woltemate, S., Schulze, J., Bleich, A., Gruber, A.D., Muthupalani, S., Fox, J.G., Josenhans, C., Suerbaum, S., Intestinal microbiota composition of interleukin-10 deficient C57BL/6J mice and susceptibility to Helicobacter hepaticus-induced colitis. PLoS ONE, 8, 2013, e70783.
-
(2013)
PLoS ONE
, vol.8
, pp. e70783
-
-
Yang, I.1
Eibach, D.2
Kops, F.3
Brenneke, B.4
Woltemate, S.5
Schulze, J.6
Bleich, A.7
Gruber, A.D.8
Muthupalani, S.9
Fox, J.G.10
Josenhans, C.11
Suerbaum, S.12
-
148
-
-
84876337823
-
Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens
-
Yin, Y., Wang, Y., Zhu, L., Liu, W., Liao, N., Jiang, M., Zhu, B., Yu, H.D., Xiang, C., Wang, X., Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens. ISME J. 7 (2013), 615–621.
-
(2013)
ISME J.
, vol.7
, pp. 615-621
-
-
Yin, Y.1
Wang, Y.2
Zhu, L.3
Liu, W.4
Liao, N.5
Jiang, M.6
Zhu, B.7
Yu, H.D.8
Xiang, C.9
Wang, X.10
-
149
-
-
0037180507
-
Cultivating the uncultured
-
Zengler, K., Toledo, G., Rappe, M., Elkins, J., Mathur, E.J., Short, J.M., Keller, M., Cultivating the uncultured. Proc. Natl. Acad. Sci. U.S.A. 99 (2002), 15681–15686.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 15681-15686
-
-
Zengler, K.1
Toledo, G.2
Rappe, M.3
Elkins, J.4
Mathur, E.J.5
Short, J.M.6
Keller, M.7
-
150
-
-
33645471793
-
A microbial world within us
-
Zoetendal, E.G., Vaughan, E.E., de Vos, W.M., A microbial world within us. Mol. Microbiol. 59 (2006), 1639–1650.
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1639-1650
-
-
Zoetendal, E.G.1
Vaughan, E.E.2
de Vos, W.M.3
|