메뉴 건너뛰기




Volumn 306, Issue 5, 2016, Pages 316-327

The mouse gut microbiome revisited: From complex diversity to model ecosystems

Author keywords

Anaerobic cultivation; Bacterial diversity; Gnotobiology; Host microbe interactions; Minimal microbiome; Mouse intestinal microbiota

Indexed keywords

BACTERIAL COLONIZATION; ECOSYSTEM; GNOTOBIOTICS; HOST PATHOGEN INTERACTION; HYBRID; INTESTINE FLORA; MEDICAL RESEARCH; MICROBIAL DIVERSITY; NONHUMAN; SHORT SURVEY; ANIMAL; DISEASE MODEL; GASTROINTESTINAL TRACT; GERMFREE ANIMAL; MICROBIOLOGY; MOUSE;

EID: 84961168891     PISSN: 14384221     EISSN: 16180607     Source Type: Journal    
DOI: 10.1016/j.ijmm.2016.03.002     Document Type: Short Survey
Times cited : (61)

References (150)
  • 2
    • 84902649784 scopus 로고    scopus 로고
    • Mining the human gut microbiota for effector strains that shape the immune system
    • Ahern, P.P., Faith, J.J., Gordon, J.I., Mining the human gut microbiota for effector strains that shape the immune system. Immunity 40 (2014), 815–823.
    • (2014) Immunity , vol.40 , pp. 815-823
    • Ahern, P.P.1    Faith, J.J.2    Gordon, J.I.3
  • 5
    • 0002739483 scopus 로고    scopus 로고
    • Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
    • F.C. Neidhardt R. Curtiss ASM Press Washington, DC
    • Bachmann, B., Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. Neidhardt, F.C., Curtiss, R., (eds.) Escherichia coli and Salmonella: Cellular and Molecular Biology, 1996, ASM Press, Washington, DC, 2460–2488.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology , pp. 2460-2488
    • Bachmann, B.1
  • 7
    • 0036087411 scopus 로고    scopus 로고
    • Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice
    • Balish, E., Warner, T., Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice. Am. J. Pathol. 160 (2002), 2253–2257.
    • (2002) Am. J. Pathol. , vol.160 , pp. 2253-2257
    • Balish, E.1    Warner, T.2
  • 8
    • 79956224326 scopus 로고    scopus 로고
    • Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model
    • Becker, N., Kunath, J., Loh, G., Blaut, M., Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model. Gut Microbes 2 (2011), 25–33.
    • (2011) Gut Microbes , vol.2 , pp. 25-33
    • Becker, N.1    Kunath, J.2    Loh, G.3    Blaut, M.4
  • 10
    • 0030297089 scopus 로고    scopus 로고
    • The indigenous gastrointestinal microflora
    • Berg, R.D., The indigenous gastrointestinal microflora. Trends Microbiol. 4 (1996), 430–435.
    • (1996) Trends Microbiol. , vol.4 , pp. 430-435
    • Berg, R.D.1
  • 11
    • 84879075084 scopus 로고    scopus 로고
    • Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?
    • Berry, D., Reinisch, W., Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?. Best Pract. Res. Clin. Gastroenterol. 27 (2013), 47–58.
    • (2013) Best Pract. Res. Clin. Gastroenterol. , vol.27 , pp. 47-58
    • Berry, D.1    Reinisch, W.2
  • 13
    • 33748446941 scopus 로고    scopus 로고
    • Host gene expression in the colon of gnotobiotic interleukin-2-deficient mice colonized with commensal colitogenic or noncolitogenic bacterial strains: common patterns and bacteria strain specific signatures
    • Bohn, E., Bechtold, O., Zahir, N., Frick, J.S., Reimann, J., Jilge, B., Autenrieth, I.B., Host gene expression in the colon of gnotobiotic interleukin-2-deficient mice colonized with commensal colitogenic or noncolitogenic bacterial strains: common patterns and bacteria strain specific signatures. Inflamm. Bowel Dis. 12 (2006), 853–862.
    • (2006) Inflamm. Bowel Dis. , vol.12 , pp. 853-862
    • Bohn, E.1    Bechtold, O.2    Zahir, N.3    Frick, J.S.4    Reimann, J.5    Jilge, B.6    Autenrieth, I.B.7
  • 14
    • 56749146467 scopus 로고    scopus 로고
    • Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis
    • Bouskra, D., Brezillon, C., Berard, M., Werts, C., Varona, R., Boneca, I.G., Eberl, G., Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis. Nature 456 (2008), 507–510.
    • (2008) Nature , vol.456 , pp. 507-510
    • Bouskra, D.1    Brezillon, C.2    Berard, M.3    Werts, C.4    Varona, R.5    Boneca, I.G.6    Eberl, G.7
  • 15
    • 0029845965 scopus 로고    scopus 로고
    • A model of host–microbial interactions in an open mammalian ecosystem
    • Bry, L., Falk, P.G., Midtvedt, T., Gordon, J.I., A model of host–microbial interactions in an open mammalian ecosystem. Science 273 (1996), 1380–1383.
    • (1996) Science , vol.273 , pp. 1380-1383
    • Bry, L.1    Falk, P.G.2    Midtvedt, T.3    Gordon, J.I.4
  • 16
    • 84886795788 scopus 로고    scopus 로고
    • Microbiota-mediated colonization resistance against intestinal pathogens
    • Buffie, C.G., Pamer, E.G., Microbiota-mediated colonization resistance against intestinal pathogens. Nat. Rev. Immunol. 13 (2013), 790–801.
    • (2013) Nat. Rev. Immunol. , vol.13 , pp. 790-801
    • Buffie, C.G.1    Pamer, E.G.2
  • 19
    • 84922017739 scopus 로고    scopus 로고
    • Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance
    • Clavel, T., Desmarchelier, C., Haller, D., Gerard, P., Rohn, S., Lepage, P., Daniel, H., Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance. Gut Microbes 5 (2014), 544–551.
    • (2014) Gut Microbes , vol.5 , pp. 544-551
    • Clavel, T.1    Desmarchelier, C.2    Haller, D.3    Gerard, P.4    Rohn, S.5    Lepage, P.6    Daniel, H.7
  • 20
    • 67649406203 scopus 로고    scopus 로고
    • Importance of glycans to the host-bacteroides mutualism in the mammalian intestine
    • Comstock, L.E., Importance of glycans to the host-bacteroides mutualism in the mammalian intestine. Cell Host Microbe 5 (2009), 522–526.
    • (2009) Cell Host Microbe , vol.5 , pp. 522-526
    • Comstock, L.E.1
  • 21
    • 84959054093 scopus 로고    scopus 로고
    • Commensal and pathogenic Escherichia coli metabolism in the gut
    • Conway, T., Cohen, P.S., Commensal and pathogenic Escherichia coli metabolism in the gut. Microbiol. Spectr., 3, 2015, 10.1128/microbiolspec.MBP-0006-2014.
    • (2015) Microbiol. Spectr. , vol.3
    • Conway, T.1    Cohen, P.S.2
  • 22
    • 78650525091 scopus 로고    scopus 로고
    • Production of an antibacterial substance in the digestive tract involved in colonization-resistance against Clostridium perfringens
    • Crost, E.H., Pujol, A., Ladire, M., Dabard, J., Raibaud, P., Carlier, J.P., Fons, M., Production of an antibacterial substance in the digestive tract involved in colonization-resistance against Clostridium perfringens. Anaerobe 16 (2010), 597–603.
    • (2010) Anaerobe , vol.16 , pp. 597-603
    • Crost, E.H.1    Pujol, A.2    Ladire, M.3    Dabard, J.4    Raibaud, P.5    Carlier, J.P.6    Fons, M.7
  • 23
    • 79959827651 scopus 로고    scopus 로고
    • Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut
    • De Paepe, M., Gaboriau-Routhiau, V., Rainteau, D., Rakotobe, S., Taddei, F., Cerf-Bensussan, N., Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut. PLoS Genet., 7, 2011, e1002107.
    • (2011) PLoS Genet. , vol.7 , pp. e1002107
    • De Paepe, M.1    Gaboriau-Routhiau, V.2    Rainteau, D.3    Rakotobe, S.4    Taddei, F.5    Cerf-Bensussan, N.6
  • 24
    • 70249150400 scopus 로고    scopus 로고
    • A Mesocosm of Lactobacillus johnsonii, Bifidobacterium longum, and Escherichia coli in the mouse gut
    • Denou, E., Rezzonico, E., Panoff, J.M., Arigoni, F., Brussow, H., A Mesocosm of Lactobacillus johnsonii, Bifidobacterium longum, and Escherichia coli in the mouse gut. DNA Cell Biol. 28 (2009), 413–422.
    • (2009) DNA Cell Biol. , vol.28 , pp. 413-422
    • Denou, E.1    Rezzonico, E.2    Panoff, J.M.3    Arigoni, F.4    Brussow, H.5
  • 25
    • 83655210633 scopus 로고    scopus 로고
    • Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila
    • Derrien, M., Van Baarlen, P., Hooiveld, G., Norin, E., Muller, M., de Vos, W.M., Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila. Front. Microbiol., 2, 2011, 166.
    • (2011) Front. Microbiol. , vol.2 , pp. 166
    • Derrien, M.1    Van Baarlen, P.2    Hooiveld, G.3    Norin, E.4    Muller, M.5    de Vos, W.M.6
  • 27
    • 84939567798 scopus 로고    scopus 로고
    • A biosynthetic pathway for a prominent class of microbiota-derived bile acids
    • Devlin, A.S., Fischbach, M.A., A biosynthetic pathway for a prominent class of microbiota-derived bile acids. Nat. Chem. Biol. 11 (2015), 685–690.
    • (2015) Nat. Chem. Biol. , vol.11 , pp. 685-690
    • Devlin, A.S.1    Fischbach, M.A.2
  • 29
    • 84895482501 scopus 로고    scopus 로고
    • Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes
    • Dichosa, A.E., Daughton, A.R., Reitenga, K.G., Fitzsimons, M.S., Han, C.S., Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes. Nat. Protoc. 9 (2014), 608–621.
    • (2014) Nat. Protoc. , vol.9 , pp. 608-621
    • Dichosa, A.E.1    Daughton, A.R.2    Reitenga, K.G.3    Fitzsimons, M.S.4    Han, C.S.5
  • 30
    • 0000297357 scopus 로고
    • The effect of the intestinal flora on the growth rate of mice, and on their susceptibility to experimental infections
    • Dubos, R.J., Schaedler, R.W., The effect of the intestinal flora on the growth rate of mice, and on their susceptibility to experimental infections. J. Exp. Med. 111 (1960), 407–417.
    • (1960) J. Exp. Med. , vol.111 , pp. 407-417
    • Dubos, R.J.1    Schaedler, R.W.2
  • 31
    • 84941069145 scopus 로고    scopus 로고
    • The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease
    • Eppig, J.T., Blake, J.A., Bult, C.J., Kadin, J.A., Richardson, J.E., Mouse Genome Database Group. The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease. Nucleic Acids Res. 43 (2015), D726–D736.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D726-D736
    • Eppig, J.T.1    Blake, J.A.2    Bult, C.J.3    Kadin, J.A.4    Richardson, J.E.5
  • 33
    • 79959855078 scopus 로고    scopus 로고
    • Predicting a human gut microbiota's response to diet in gnotobiotic mice
    • Faith, J.J., McNulty, N.P., Rey, F.E., Gordon, J.I., Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science 333 (2011), 101–104.
    • (2011) Science , vol.333 , pp. 101-104
    • Faith, J.J.1    McNulty, N.P.2    Rey, F.E.3    Gordon, J.I.4
  • 39
    • 84883813272 scopus 로고    scopus 로고
    • Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice
    • Ganesh, B.P., Klopfleisch, R., Loh, G., Blaut, M., Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice. PLoS ONE, 8, 2013, e74963.
    • (2013) PLoS ONE , vol.8 , pp. e74963
    • Ganesh, B.P.1    Klopfleisch, R.2    Loh, G.3    Blaut, M.4
  • 41
    • 84867981662 scopus 로고    scopus 로고
    • Enrichment of previously uncultured bacteria from natural complex communities by adhesion to solid surfaces
    • Gich, F., Janys, M.A., Konig, M., Overmann, J., Enrichment of previously uncultured bacteria from natural complex communities by adhesion to solid surfaces. Environ. Microbiol. 14 (2012), 2984–2997.
    • (2012) Environ. Microbiol. , vol.14 , pp. 2984-2997
    • Gich, F.1    Janys, M.A.2    Konig, M.3    Overmann, J.4
  • 43
    • 84947999013 scopus 로고    scopus 로고
    • Colonization of C57BL/6 mice by a potential probiotic Bifidobacterium bifidum strain under germ-free and specific pathogen-free conditions and during experimental colitis
    • Grimm, V., Radulovic, K., Riedel, C.U., Colonization of C57BL/6 mice by a potential probiotic Bifidobacterium bifidum strain under germ-free and specific pathogen-free conditions and during experimental colitis. PLoS ONE, 10, 2015, e0139935.
    • (2015) PLoS ONE , vol.10 , pp. e0139935
    • Grimm, V.1    Radulovic, K.2    Riedel, C.U.3
  • 46
    • 0035843993 scopus 로고    scopus 로고
    • Commensal host–bacterial relationships in the gut
    • Hooper, L.V., Gordon, J.I., Commensal host–bacterial relationships in the gut. Science 292 (2001), 1115–1118.
    • (2001) Science , vol.292 , pp. 1115-1118
    • Hooper, L.V.1    Gordon, J.I.2
  • 47
    • 84861980130 scopus 로고    scopus 로고
    • Interactions between the microbiota and the immune system
    • Hooper, L.V., Littman, D.R., Macpherson, A.J., Interactions between the microbiota and the immune system. Science 336 (2012), 1268–1273.
    • (2012) Science , vol.336 , pp. 1268-1273
    • Hooper, L.V.1    Littman, D.R.2    Macpherson, A.J.3
  • 49
    • 80051925894 scopus 로고    scopus 로고
    • The human commensal Bacteroides fragilis binds intestinal mucin
    • Huang, J.Y., Lee, S.M., Mazmanian, S.K., The human commensal Bacteroides fragilis binds intestinal mucin. Anaerobe 17 (2011), 137–141.
    • (2011) Anaerobe , vol.17 , pp. 137-141
    • Huang, J.Y.1    Lee, S.M.2    Mazmanian, S.K.3
  • 55
    • 83655193511 scopus 로고    scopus 로고
    • The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen's virulence factors, and the host's mucosal immune response
    • Kaiser, P., Diard, M., Stecher, B., Hardt, W.D., The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen's virulence factors, and the host's mucosal immune response. Immunol. Rev. 245 (2012), 56–83.
    • (2012) Immunol. Rev. , vol.245 , pp. 56-83
    • Kaiser, P.1    Diard, M.2    Stecher, B.3    Hardt, W.D.4
  • 56
    • 84861972274 scopus 로고    scopus 로고
    • Regulated virulence controls the ability of a pathogen to compete with the gut microbiota
    • Kamada, N., Kim, Y.G., Sham, H.P., Vallance, B.A., Puente, J.L., Martens, E.C., Nunez, G., Regulated virulence controls the ability of a pathogen to compete with the gut microbiota. Science 336 (2012), 1325–1329.
    • (2012) Science , vol.336 , pp. 1325-1329
    • Kamada, N.1    Kim, Y.G.2    Sham, H.P.3    Vallance, B.A.4    Puente, J.L.5    Martens, E.C.6    Nunez, G.7
  • 58
    • 20444367601 scopus 로고    scopus 로고
    • Movement and fixation of intestinal microbiota after administration of human feces to germfree mice
    • Kibe, R., Sakamoto, M., Yokota, H., Ishikawa, H., Aiba, Y., Koga, Y., Benno, Y., Movement and fixation of intestinal microbiota after administration of human feces to germfree mice. Appl. Environ. Microbiol. 71 (2005), 3171–3178.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3171-3178
    • Kibe, R.1    Sakamoto, M.2    Yokota, H.3    Ishikawa, H.4    Aiba, Y.5    Koga, Y.6    Benno, Y.7
  • 62
    • 84977667775 scopus 로고    scopus 로고
    • Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract
    • Krumbeck, J.A., Marsteller, N.L., Frese, S.A., Peterson, D.A., Ramer-Tait, A.E., Hutkins, R.W., Walter, J., Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract. Environ. Microbiol., 2015, 10.1111/1462-2920.13108.
    • (2015) Environ. Microbiol.
    • Krumbeck, J.A.1    Marsteller, N.L.2    Frese, S.A.3    Peterson, D.A.4    Ramer-Tait, A.E.5    Hutkins, R.W.6    Walter, J.7
  • 64
    • 84920943976 scopus 로고    scopus 로고
    • The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
    • Lagier, J.C., Hugon, P., Khelaifia, S., Fournier, P.E., La Scola, B., Raoult, D., The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin. Microbiol. Rev. 28 (2015), 237–264.
    • (2015) Clin. Microbiol. Rev. , vol.28 , pp. 237-264
    • Lagier, J.C.1    Hugon, P.2    Khelaifia, S.3    Fournier, P.E.4    La Scola, B.5    Raoult, D.6
  • 65
    • 84961999746 scopus 로고    scopus 로고
    • Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design
    • Laukens, D., Brinkman, B.M., Raes, J., De Vos, M., Vandenabeele, P., Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design. FEMS Microbiol. Rev. 40 (2015), 117–132.
    • (2015) FEMS Microbiol. Rev. , vol.40 , pp. 117-132
    • Laukens, D.1    Brinkman, B.M.2    Raes, J.3    De Vos, M.4    Vandenabeele, P.5
  • 66
    • 84960465464 scopus 로고    scopus 로고
    • Proposal to restrict the genus Clostridium (Prazmowski) to Clostridium butyricum and related species
    • Lawson, P.A., Rainey, F.A., Proposal to restrict the genus Clostridium (Prazmowski) to Clostridium butyricum and related species. Int. J. Syst. Evol. Microbiol., 2015, 10.1099/ijsem.0.000824.
    • (2015) Int. J. Syst. Evol. Microbiol.
    • Lawson, P.A.1    Rainey, F.A.2
  • 71
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley, R.E., Peterson, D.A., Gordon, J.I., Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124 (2006), 837–848.
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 73
    • 3543130182 scopus 로고    scopus 로고
    • Effect of the Escherichia coli EMO strain on experimental infection by Salmonella enterica serovar Typhimurium in gnotobiotic mice
    • Lima-Filho, J.V., Vieira, L.Q., Arantes, R.M., Nicoli, J.R., Effect of the Escherichia coli EMO strain on experimental infection by Salmonella enterica serovar Typhimurium in gnotobiotic mice. Braz. J. Med. Biol. Res. 37 (2004), 1005–1013.
    • (2004) Braz. J. Med. Biol. Res. , vol.37 , pp. 1005-1013
    • Lima-Filho, J.V.1    Vieira, L.Q.2    Arantes, R.M.3    Nicoli, J.R.4
  • 74
    • 84875366034 scopus 로고    scopus 로고
    • The role of biogeography in shaping diversity of the intestinal microbiota in house mice
    • Linnenbrink, M., Wang, J., Hardouin, E.A., Kunzel, S., Metzler, D., Baines, J.F., The role of biogeography in shaping diversity of the intestinal microbiota in house mice. Mol. Ecol. 22 (2013), 1904–1916.
    • (2013) Mol. Ecol. , vol.22 , pp. 1904-1916
    • Linnenbrink, M.1    Wang, J.2    Hardouin, E.A.3    Kunzel, S.4    Metzler, D.5    Baines, J.F.6
  • 75
    • 84908608590 scopus 로고    scopus 로고
    • The gut microbiota, bacterial metabolites and colorectal cancer
    • Louis, P., Hold, G.L., Flint, H.J., The gut microbiota, bacterial metabolites and colorectal cancer. Nat. Rev. Microbiol. 12 (2014), 661–672.
    • (2014) Nat. Rev. Microbiol. , vol.12 , pp. 661-672
    • Louis, P.1    Hold, G.L.2    Flint, H.J.3
  • 76
    • 84928881439 scopus 로고    scopus 로고
    • Standardised animal models of host microbial mutualism
    • Macpherson, A.J., McCoy, K.D., Standardised animal models of host microbial mutualism. Mucosal Immunol. 8 (2015), 476–486.
    • (2015) Mucosal Immunol. , vol.8 , pp. 476-486
    • Macpherson, A.J.1    McCoy, K.D.2
  • 77
    • 1542618118 scopus 로고    scopus 로고
    • Induction of protective IgA by intestinal dendritic cells carrying commensal bacteria
    • Macpherson, A.J., Uhr, T., Induction of protective IgA by intestinal dendritic cells carrying commensal bacteria. Science 303 (2004), 1662–1665.
    • (2004) Science , vol.303 , pp. 1662-1665
    • Macpherson, A.J.1    Uhr, T.2
  • 83
    • 45549091087 scopus 로고    scopus 로고
    • Capsular polysaccharides of symbiotic bacteria modulate immune responses during experimental colitis
    • Mazmanian, S.K., Capsular polysaccharides of symbiotic bacteria modulate immune responses during experimental colitis. J. Pediatr. Gastroenterol. Nutr. 46:Suppl. 1 (2008), E11–E12.
    • (2008) J. Pediatr. Gastroenterol. Nutr. , vol.46 , pp. E11-E12
    • Mazmanian, S.K.1
  • 84
    • 22144490199 scopus 로고    scopus 로고
    • An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
    • Mazmanian, S.K., Liu, C.H., Tzianabos, A.O., Kasper, D.L., An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122 (2005), 107–118.
    • (2005) Cell , vol.122 , pp. 107-118
    • Mazmanian, S.K.1    Liu, C.H.2    Tzianabos, A.O.3    Kasper, D.L.4
  • 85
    • 44449106055 scopus 로고    scopus 로고
    • A microbial symbiosis factor prevents intestinal inflammatory disease
    • Mazmanian, S.K., Round, J.L., Kasper, D.L., A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453 (2008), 620–625.
    • (2008) Nature , vol.453 , pp. 620-625
    • Mazmanian, S.K.1    Round, J.L.2    Kasper, D.L.3
  • 88
    • 1342303482 scopus 로고    scopus 로고
    • Of mice and not men: differences between mouse and human immunology
    • Mestas, J., Hughes, C.C., Of mice and not men: differences between mouse and human immunology. J. Immunol. 172 (2004), 2731–2738.
    • (2004) J. Immunol. , vol.172 , pp. 2731-2738
    • Mestas, J.1    Hughes, C.C.2
  • 91
    • 0016167941 scopus 로고
    • Human fecal flora: the normal flora of 20 Japanese-Hawaiians
    • Moore, W.E., Holdeman, L.V., Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl. Microbiol. 27 (1974), 961–979.
    • (1974) Appl. Microbiol. , vol.27 , pp. 961-979
    • Moore, W.E.1    Holdeman, L.V.2
  • 94
    • 84920404296 scopus 로고    scopus 로고
    • How informative is the mouse for human gut microbiota research?
    • Nguyen, T.L., Vieira-Silva, S., Liston, A., Raes, J., How informative is the mouse for human gut microbiota research?. Dis. Model Mech. 8 (2015), 1–16.
    • (2015) Dis. Model Mech. , vol.8 , pp. 1-16
    • Nguyen, T.L.1    Vieira-Silva, S.2    Liston, A.3    Raes, J.4
  • 95
    • 84942072184 scopus 로고
    • Thieresches Leben ohne Bakterien im Verdauungskanal
    • Nuttal, G.H.F., Thierfelder, H., Thieresches Leben ohne Bakterien im Verdauungskanal. Z. Physiol. Chem. 21 (1895), 109–121.
    • (1895) Z. Physiol. Chem. , vol.21 , pp. 109-121
    • Nuttal, G.H.F.1    Thierfelder, H.2
  • 98
    • 0002274807 scopus 로고
    • Development of an “Altered Schaedler Flora” for the generation of NCI gnotobiotic rodents
    • Orcutt, R.P., Gianni, F.J., Judge, R.J., Development of an “Altered Schaedler Flora” for the generation of NCI gnotobiotic rodents. Microecol. Ther., 17, 1987, 59.
    • (1987) Microecol. Ther. , vol.17 , pp. 59
    • Orcutt, R.P.1    Gianni, F.J.2    Judge, R.J.3
  • 102
    • 33749997498 scopus 로고    scopus 로고
    • Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
    • Rawls, J.F., Mahowald, M.A., Ley, R.E., Gordon, J.I., Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell 127 (2006), 423–433.
    • (2006) Cell , vol.127 , pp. 423-433
    • Rawls, J.F.1    Mahowald, M.A.2    Ley, R.E.3    Gordon, J.I.4
  • 103
    • 84907323900 scopus 로고    scopus 로고
    • Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
    • Rettedal, E.A., Gumpert, H., Sommer, M.O., Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria. Nat. Commun., 5, 2014, 4714.
    • (2014) Nat. Commun. , vol.5 , pp. 4714
    • Rettedal, E.A.1    Gumpert, H.2    Sommer, M.O.3
  • 107
    • 84947202455 scopus 로고    scopus 로고
    • The human gut sterolbiome: bile acid-microbiome endocrine aspects and therapeutics
    • Ridlon, J.M., Bajaj, J.S., The human gut sterolbiome: bile acid-microbiome endocrine aspects and therapeutics. Acta Pharm. Sin., B 5 (2015), 99–105.
    • (2015) Acta Pharm. Sin., B , vol.5 , pp. 99-105
    • Ridlon, J.M.1    Bajaj, J.S.2
  • 108
    • 19544388278 scopus 로고    scopus 로고
    • Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents
    • Robertson, B.R., O'Rourke, J.L., Neilan, B.A., Vandamme, P., On, S.L., Fox, J.G., Lee, A., Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents. Int. J. Syst. Evol. Microbiol. 55 (2005), 1199–1204.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1199-1204
    • Robertson, B.R.1    O'Rourke, J.L.2    Neilan, B.A.3    Vandamme, P.4    On, S.L.5    Fox, J.G.6    Lee, A.7
  • 109
    • 79956311926 scopus 로고    scopus 로고
    • The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota
    • Round, J.L., Lee, S.M., Li, J., Tran, G., Jabri, B., Chatila, T.A., Mazmanian, S.K., The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota. Science 332 (2011), 974–977.
    • (2011) Science , vol.332 , pp. 974-977
    • Round, J.L.1    Lee, S.M.2    Li, J.3    Tran, G.4    Jabri, B.5    Chatila, T.A.6    Mazmanian, S.K.7
  • 111
    • 84929310699 scopus 로고    scopus 로고
    • Control of brain development, function, and behavior by the microbiome
    • Sampson, T.R., Mazmanian, S.K., Control of brain development, function, and behavior by the microbiome. Cell Host Microbe 17 (2015), 565–576.
    • (2015) Cell Host Microbe , vol.17 , pp. 565-576
    • Sampson, T.R.1    Mazmanian, S.K.2
  • 112
    • 33745610880 scopus 로고    scopus 로고
    • A humanized gnotobiotic mouse model of host–archaeal–bacterial mutualism
    • Samuel, B.S., Gordon, J.I., A humanized gnotobiotic mouse model of host–archaeal–bacterial mutualism. Proc. Natl. Acad. Sci. U.S.A. 103 (2006), 10011–10016.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 10011-10016
    • Samuel, B.S.1    Gordon, J.I.2
  • 114
    • 78651189876 scopus 로고
    • Association of germfree mice with bacteria isolated from normal mice
    • Schaedler, R.W., Dubs, R., Costello, R., Association of germfree mice with bacteria isolated from normal mice. J. Exp. Med. 122 (1965), 77–82.
    • (1965) J. Exp. Med. , vol.122 , pp. 77-82
    • Schaedler, R.W.1    Dubs, R.2    Costello, R.3
  • 116
    • 84857088288 scopus 로고    scopus 로고
    • Dextran sodium sulfate-induced inflammation alters the expression of proteins by intestinal Escherichia coli strains in a gnotobiotic mouse model
    • Schumann, S., Alpert, C., Engst, W., Loh, G., Blaut, M., Dextran sodium sulfate-induced inflammation alters the expression of proteins by intestinal Escherichia coli strains in a gnotobiotic mouse model. Appl. Environ. Microbiol. 78 (2012), 1513–1522.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 1513-1522
    • Schumann, S.1    Alpert, C.2    Engst, W.3    Loh, G.4    Blaut, M.5
  • 119
    • 33845508443 scopus 로고    scopus 로고
    • Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host
    • Sonnenburg, J.L., Chen, C.T., Gordon, J.I., Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol., 4, 2006, e413.
    • (2006) PLoS Biol. , vol.4 , pp. e413
    • Sonnenburg, J.L.1    Chen, C.T.2    Gordon, J.I.3
  • 121
    • 84862623932 scopus 로고    scopus 로고
    • Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
    • Staubach, F., Kunzel, S., Baines, A.C., Yee, A., McGee, B.M., Backhed, F., Baines, J.F., Johnsen, J.M., Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. ISME J. 6 (2012), 1345–1355.
    • (2012) ISME J. , vol.6 , pp. 1345-1355
    • Staubach, F.1    Kunzel, S.2    Baines, A.C.3    Yee, A.4    McGee, B.M.5    Backhed, F.6    Baines, J.F.7    Johnsen, J.M.8
  • 122
    • 84876408419 scopus 로고    scopus 로고
    • ’Blooming’ in the gut: how dysbiosis might contribute to pathogen evolution
    • Stecher, B., Maier, L., Hardt, W.D., ’Blooming’ in the gut: how dysbiosis might contribute to pathogen evolution. Nat. Rev. Microbiol. 11 (2013), 277–284.
    • (2013) Nat. Rev. Microbiol. , vol.11 , pp. 277-284
    • Stecher, B.1    Maier, L.2    Hardt, W.D.3
  • 125
    • 84958241663 scopus 로고    scopus 로고
    • The human gut mycobiome: pitfalls and potentials-a mycologist's perspective
    • Suhr, M.J., Hallen-Adams, H.E., The human gut mycobiome: pitfalls and potentials-a mycologist's perspective. Mycologia 107 (2015), 1057–1073.
    • (2015) Mycologia , vol.107 , pp. 1057-1073
    • Suhr, M.J.1    Hallen-Adams, H.E.2
  • 126
    • 2942545832 scopus 로고    scopus 로고
    • The effect of probiotic treatment with Clostridium butyricum on enterohemorrhagic Escherichia coli O157:H7 infection in mice
    • Takahashi, M., Taguchi, H., Yamaguchi, H., Osaki, T., Komatsu, A., Kamiya, S., The effect of probiotic treatment with Clostridium butyricum on enterohemorrhagic Escherichia coli O157:H7 infection in mice. FEMS Immunol. Med. Microbiol. 41 (2004), 219–226.
    • (2004) FEMS Immunol. Med. Microbiol. , vol.41 , pp. 219-226
    • Takahashi, M.1    Taguchi, H.2    Yamaguchi, H.3    Osaki, T.4    Komatsu, A.5    Kamiya, S.6
  • 127
    • 0003944936 scopus 로고
    • Normal Microflora
    • Chapman & Hall London
    • Tannock, G.W., Normal Microflora. 1995, Chapman & Hall, London.
    • (1995)
    • Tannock, G.W.1
  • 128
    • 0000121910 scopus 로고
    • Flexible film apparatus for the rearing and use of germfree animals
    • Trexler, P.C., Reynolds, L.I., Flexible film apparatus for the rearing and use of germfree animals. Appl. Microbiol. 5 (1957), 406–412.
    • (1957) Appl. Microbiol. , vol.5 , pp. 406-412
    • Trexler, P.C.1    Reynolds, L.I.2
  • 129
    • 77950669604 scopus 로고    scopus 로고
    • The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
    • Turnbaugh, P.J., Ridaura, V.K., Faith, J.J., Rey, F.E., Knight, R., Gordon, J.I., The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci. Transl. Med., 1, 2009, 6ra14.
    • (2009) Sci. Transl. Med. , vol.1 , pp. 6ra14
    • Turnbaugh, P.J.1    Ridaura, V.K.2    Faith, J.J.3    Rey, F.E.4    Knight, R.5    Gordon, J.I.6
  • 130
    • 84955253870 scopus 로고    scopus 로고
    • In vitro cultivation of ‘unculturable’ oral bacteria, facilitated by community culture and media supplementation with siderophores
    • Vartoukian, S.R., Adamowska, A., Lawlor, M., Moazzez, R., Dewhirst, F.E., Wade, W.G., In vitro cultivation of ‘unculturable’ oral bacteria, facilitated by community culture and media supplementation with siderophores. PLoS ONE, 11, 2016, e0146926.
    • (2016) PLoS ONE , vol.11 , pp. e0146926
    • Vartoukian, S.R.1    Adamowska, A.2    Lawlor, M.3    Moazzez, R.4    Dewhirst, F.E.5    Wade, W.G.6
  • 132
    • 84897127283 scopus 로고    scopus 로고
    • The virome in mammalian physiology and disease
    • Virgin, H.W., The virome in mammalian physiology and disease. Cell 157 (2014), 142–150.
    • (2014) Cell , vol.157 , pp. 142-150
    • Virgin, H.W.1
  • 135
    • 84903722284 scopus 로고    scopus 로고
    • Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice
    • Wang, J., Linnenbrink, M., Kunzel, S., Fernandes, R., Nadeau, M.J., Rosenstiel, P., Baines, J.F., Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proc. Natl. Acad. Sci. U.S.A. 111 (2014), E2703–E2710.
    • (2014) Proc. Natl. Acad. Sci. U.S.A. , vol.111 , pp. E2703-E2710
    • Wang, J.1    Linnenbrink, M.2    Kunzel, S.3    Fernandes, R.4    Nadeau, M.J.5    Rosenstiel, P.6    Baines, J.F.7
  • 136
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G.M., Tiedje, J.M., Cole, J.R., Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73 (2007), 5261–5267.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 137
    • 84999054106 scopus 로고    scopus 로고
    • Draft genome sequences of the altered schaedler flora, a defined bacterial community from gnotobiotic mice
    • Wannemuehler, M.J., Overstreet, A.M., Ward, D.V., Phillips, G.J., Draft genome sequences of the altered schaedler flora, a defined bacterial community from gnotobiotic mice. Genome Announc. 2 (2014), e00214–e00287.
    • (2014) Genome Announc. , vol.2 , pp. e00214-e00287
    • Wannemuehler, M.J.1    Overstreet, A.M.2    Ward, D.V.3    Phillips, G.J.4
  • 138
    • 84866174523 scopus 로고    scopus 로고
    • Genomic approaches to studying the human microbiota
    • Weinstock, G.M., Genomic approaches to studying the human microbiota. Nature 489 (2012), 250–256.
    • (2012) Nature , vol.489 , pp. 250-256
    • Weinstock, G.M.1
  • 139
    • 84882714002 scopus 로고    scopus 로고
    • Plasmacytoid dendritic cells are crucial in Bifidobacterium adolescentis-mediated inhibition of Yersinia enterocolitica infection
    • Wittmann, A., Autenrieth, I.B., Frick, J.S., Plasmacytoid dendritic cells are crucial in Bifidobacterium adolescentis-mediated inhibition of Yersinia enterocolitica infection. PLoS ONE, 8, 2013, e71338.
    • (2013) PLoS ONE , vol.8 , pp. e71338
    • Wittmann, A.1    Autenrieth, I.B.2    Frick, J.S.3
  • 140
    • 84929313374 scopus 로고    scopus 로고
    • An integrative view of microbiome-host interactions in inflammatory bowel diseases
    • Wlodarska, M., Kostic, A.D., Xavier, R.J., An integrative view of microbiome-host interactions in inflammatory bowel diseases. Cell Host Microbe 17 (2015), 577–591.
    • (2015) Cell Host Microbe , vol.17 , pp. 577-591
    • Wlodarska, M.1    Kostic, A.D.2    Xavier, R.J.3
  • 142
    • 84908406670 scopus 로고    scopus 로고
    • Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models
    • Woting, A., Pfeiffer, N., Loh, G., Klaus, S., Blaut, M., Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models. MBio 5 (2014), e01514–e01530.
    • (2014) MBio , vol.5 , pp. e01514-e01530
    • Woting, A.1    Pfeiffer, N.2    Loh, G.3    Klaus, S.4    Blaut, M.5
  • 148
    • 84876337823 scopus 로고    scopus 로고
    • Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens
    • Yin, Y., Wang, Y., Zhu, L., Liu, W., Liao, N., Jiang, M., Zhu, B., Yu, H.D., Xiang, C., Wang, X., Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens. ISME J. 7 (2013), 615–621.
    • (2013) ISME J. , vol.7 , pp. 615-621
    • Yin, Y.1    Wang, Y.2    Zhu, L.3    Liu, W.4    Liao, N.5    Jiang, M.6    Zhu, B.7    Yu, H.D.8    Xiang, C.9    Wang, X.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.