A mesocosm of lactobacillus johnsonii, bifidobacterium longum, and escherichia coli in the mouse gut

DNA and Cell Biology

Volumn 28, Issue 8, 2009, Pages 413-422

  Denou, Emmanuel ^a,b   Rezzonico, Enea ^a   Panoff, Jean Michel ^b   Arigoni, Fabrizio ^a   Brüssow, Harald ^a  

^a NESTLÉ RESEARCH CENTER   (Switzerland)

^b UNIVERSITÉ DE CAEN   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL STRAIN; BIFIDOBACTERIUM LONGUM; CELL COUNT; COMMENSAL; COMPETITOR SPECIES; CONTROLLED STUDY; ESCHERICHIA COLI; FEMALE; GENE EXPRESSION; GNOTOBIOTICS; INTESTINE FLORA; LACTOBACILLUS JOHNSONII; LACTOBACILLUS PARACASEI; MESOCOSM; MICROARRAY ANALYSIS; MICROBIAL ACTIVITY; MICROBIAL DEGRADATION; MICROBIAL METABOLISM; MICROCOSM; MOUSE; NONHUMAN; PRIORITY JOURNAL; ANIMAL; ANTIBIOSIS; BACTERIAL COUNT; BIFIDOBACTERIUM; C3H MOUSE; CECUM; COLON; DNA MICROARRAY; ECOSYSTEM; ESCHERICHIA COLI K 12; FECES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GERMFREE ANIMAL; GROWTH, DEVELOPMENT AND AGING; ILEUM; INTESTINE; INTESTINE MUCOSA; JEJUNUM; LACTOBACILLUS; MICROBIOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

BACTERIA (MICROORGANISMS); BIFIDOBACTERIUM LONGUM; ESCHERICHIA COLI; ESCHERICHIA COLI K12; LACTOBACILLUS JOHNSONII; LACTOBACILLUS PARACASEI; MAMMALIA; MUS;

ANIMALS; ANTIBIOSIS; BIFIDOBACTERIUM; CECUM; COLON; COLONY COUNT, MICROBIAL; ECOSYSTEM; ESCHERICHIA COLI; ESCHERICHIA COLI K12; FECES; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GERM-FREE LIFE; ILEUM; INTESTINAL MUCOSA; INTESTINES; JEJUNUM; LACTOBACILLUS; MICE; MICE, INBRED C3H; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

EID: 70249150400     PISSN: 10445498     EISSN: None     Source Type: Journal    
DOI: 10.1089/dna.2009.0873     Document Type: Article

References (47)

1. Backhed, F., Ley, R.E., Sonnenburg, J.L., Peterson, D.A., and ordon, J.I. (2005). Host-bacterial mutualism in the human ntestine. Science 307, 1915-1920.
2. Bergonzelli, G.E., Granato, D., Pridmore, R.D., Marvin-Guy, L.F., Donnicola, D., and Corthesy-Theulaz, I.E. (2006). GroEL Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: Otential role in interactions with the host and the gastric pathogen Helicobacter pylori. Infect Immun 74, 425-434.
3. Cani, P.D., Neyrinck, A.M., Fava, F., Knauf, C., Burcelin, R.G., Tuohy, K.M., Gibson, G.R., and Delzenne, N.M. (2007). Selective increases of bifidobacteria in gut microflora improve high-fat-diet-induced diabetes in mice through a mechanism associated with endotoxaemia. Diabetologia 50, 2374-2383.
4. Denou, E., Berger, B., Barretto, C., Panoff, J.M., Arigoni, F., and Brussow, H. (2007). Gene expression of a commensal Lactobacillus johnsonii strain NCC533 during in vitro growth and in the murine gut. J Bacteriol 189, 8109-8119.
5. Denou, E., Pridmore, R.D., Berger, B., Panoff, J.M., Arigoni, F., and Brussow, H. (2008a). Bacterial genotype and phenotype association: Gut persistence of Lactobacillus commensal. J Bacteriol 190, 3161-3168.
6. Denou, E., Pridmore, R.D., Ventura, M., Pittet, A.C., Zwahlen, M.C., Berger, B., Barretto, C., Panoff, J.M., and Brussow, H. (2008b). The role of prophage for genome diversification within a clonal lineage of Lactobacillus johnsonii. J Bacteriol 190, 5806-5813.
7. Eckburg, P.B., Bik, E.M., Bernstein, C.N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S.R., Nelson, K.E., and Relman, D.A. (2005). Diversity of the human intestinal microbial flora. Science 308, 1635-1638.
8. Freter, R., Stauffer, E., Cleven, D., Holdeman, L.V., and Moore, W.E. (1983). Continuous-flow cultures as in vitro models of the ecology of large intestinal flora. Infect Immun 39, 666-675.
9. Gill, S.R., Pop, M., Deboy, R.T., Eckburg, P.B., Turnbaugh, P.J., Samuel, B.S., Gordon, J.I., Relman, D.A., Fraser-Liggett, C.M., and Nelson, K.E. (2006). Metagenomic analysis of the human distal gut microbiome. Science 312, 1355-1359.
10. Grozdanov, L., Raasch, C., Schulze, J., Sonnenborn, U., Gottschalk, G., Hacker, J., and Dobrindt, U. (2004). Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917. J Bacteriol 186, 5432-5441.
11. Henker, J., Laass, M., Blokhin, B.M., Bolbot, Y.K., Maydannik, V.G., Elze, M., Wolff, C., and Schulze, J. (2007). The probiotic Escherichia coli strain Nissle 1917 (EcN) stops acute diarrhea in infants and toddlers. Eur J Pediatr 166, 311-318.4
12. Hooper, L.V., and Gordon, J.I. (2001). Commensal host-bacterial relationships in the gut. Science 292, 1115-1118.
13. Hooper, L.V., Midtvedt, T., and Gordon, J.I. (2002). How hostmicrobial interactions shape the nutrient environment of the mammalian intestine. Annu Rev Nutr 22, 283-307.
14. Humen, M.A., De Antoni, G.L., Benyacoub, J., Costas, M.E., Cardozo, M.I., Kozubsky, L., Saudan, K.Y., Boenzli-Bruand, A., Blum, S., Schiffrin, E.J., and Perez, P.F. (2005). Lactobacillus johnsonii La1 antagonizes Giardia intestinalis in vivo. Infect Immun 73, 1265-1269.
15. Inoue, R., Otsuka, M., Nishio, A., and Ushida, K. (2007). Primary administration of Lactobacillus johnsonii NCC533 in weaning period suppresses the elevation of proinflammatory cytokines and CD86 gene expressions in skin lesions in NC=Nga mice. FEMS Immunol Med Microbiol 50, 67-76.
16. Ivanov, D., Emonet, C., Foata, F., Affolter, M., Delley, M., Fisseha, M., Blum-Sperisen, S., Kochhar, S., and Arigoni, F. (2006). A serpin from the gut bacterium Bifidobacterium longum inhibits eukaryotic elastase-like serine proteases. J Biol Chem 281, 17246-17252.
17. Klijn, A., Mercenier, A., and Arigoni, F. (2005). Lessons from the genomes of bifidobacteria. FEMS Microbiol Rev 29, 491-509.
18. Kruis, W., Fric, P., Pokrotnieks, J., Lukas, M., Fixa, B., Kascak, M., Kamm, M.A., Weismueller, J., Beglinger, C., Stolte, M., Wolff, C., and Schulze, J. (2004). Maintaining remission of ulcerative colitis with the probiotic Escherichia coli Nissle 1917 is as effective as with standard mesalazine. Gut 53, 1617-1623.
19. Kuipers, O.P., Beerthuyzen, M.M., Siezen, R.J., and de Vos, W.M. (1993). Characterization of the nisin gene cluster nisABTCIPR of Lactococcus lactis. Requirement of expression of the nisA and nisI genes for development of immunity. Eur J Biochem 216, 281-291.
20. Ley, R.E., Peterson, D.A., and Gordon, J.I. (2006). Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837-848.
21. Marteau, P., Pochart, P., Dore, J., Bera-Maillet, C., Bernalier, A., and Corthier, G. (2001). Comparative study of bacterial groups within the human cecal and fecal microbiota. Appl Environ Microbiol 67, 4939-4942.
22. Mueller, S., Saunier, K., Hanisch, C., Norin, E., Alm, L., Midtvedt, T., Cresci, A., Silvi, S., Orpianesi, C., Verdenelli, M.C., Clavel, T., Koebnick, C., Zunft, H.J., Dore, J., and Blaut, M. (2006). Differences in fecal microbiota in different European study populations in relation to age, gender, and country: A crosssectional study. Appl Environ Microbiol 72, 1027-1033.
23. Norin, K.E., Persson, A.K., Saxerholt, H., and Midtvedt, T. (1991). Establishment of Lactobacillus and Bifidobacterium species in germfree mice and their influence on some microfloraassociated characteristics. Appl Environ Microbiol 57, 1850-1852.
24. Palmer, C., Bik, E.M., Digiulio, D.B., Relman, D.A., and Brown, P.O. (2007). Development of the human infant intestinal microbiota. PLoS Biol 5, e177.
25. Pant, N., Marcotte, H., Brussow, H., Svensson, L., and Hammarstrom, L. (2007). Effective prophylaxis against rotavirus diarrhea using a combination of Lactobacillus rhamnosus GG and antibodies. BMC Microbiology 7, e86.
26. Park, S.H., and Itoh, K. (2005). Species-specific oligonucleotide probes for the detection and identification of Lactobacillus isolated from mouse faeces. J Appl Microbiol 99, 51-57.
27. Patzer, S.I., Baquero, M.R., Bravo, D., Moreno, F., and Hantke, K. (2003). The colicin G, H and X determinants encode microcins M and H47, which might utilize the catecholate siderophore receptors FepA, Cir, Fiu and IroN. Microbiology 149, 2557-2570.
28. Pena, J.A., Li, S.Y., Wilson, P.H., Thibodeau, S.A., Szary, A.J., and Versalovic, J. (2004). Genotypic and phenotypic studies of murine intestinal lactobacilli: Species differences in mice with and without colitis. Appl Environ Microbiol 70, 558-568.
29. Pridmore, R.D., Berger, B., Desiere, F., Vilanova, D., Barretto, C., Pittet, A.C., Zwahlen, M.C., Rouvet, M., Altermann, E., Barrangou, R., Mollet, B., Mercenier, A., Klaenhammer, T., Arigoni, F., and Schell, M.A. (2004). The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. Proc Natl Acad Sci USA 101, 2512-2517.
30. Pridmore, R.D., Pittet, A.C., Praplan, F., and Cavadini, C. (2008). Hydrogen peroxide production by Lactobacillus johnsonii NCC 533 and its role in anti-Salmonella activity. FEMS Microbiol 1Lett 283, 210-215.
31. Rembacken, B.J., Snelling, A.M., Hawkey, P.M., Chalmers, D.M., and Axon, A.T. (1999). Non-pathogenic Escherichia coli versus mesalazine for the treatment of ulcerative colitis: A randomized trial. Lancet 354, 635-639.
32. Rezzonico, E., Lariani, S., Barretto, C., Cuanoud, G., Giliberti, G., Delley, M., Arigoni, F., and Pessi, G. (2007). Global transcriptome analysis of the heat shock response of Bifidobacterium longum. FEMS Microbiol Lett 271, 136-145.
33. Roach, S., Savage, D.C., and Tannock, G.W. (1977). Lactobacilli isolated from the stomach of conventional mice. Appl Environ Microbiol 33, 1197-1203.
34. Samuel, B.S., and Gordon, J.I. (2006). A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc Natl Acad Sci USA 103, 10011-10016.
35. Sarker, S.A., Sultana, S., Fuchs, G.J., Alam, N.H., Azim, T., Brussow, H., and Hammarstrom, L. (2005). Lactobacillus paracasei strain ST11 has no effect on rotavirus but ameliorates the outcome of nonrotavirus diarrhea in children from Bangladesh. Pediatrics 116, e221-e228.
36. Sarma-Rupavtarm, R.B., Ge, Z., Schauer, D.B., Fox, J.G., and Polz, M.F. (2004). Spatial distribution and stability of the eight microbial species of the altered Schaedler flora in the mouse gastrointestinal tract. Appl Environ Microbiol 70, 2791-2800.
37. Schell, M.A., Karmirantzou, M., Snel, B., Vilanova, D., Berger, B., Pessi, G., Zwahlen, M.C., Desiere, F., Bork, P., Delley, M., Pridmore, R.D., and Arigoni, F. (2002). The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci USA 99, 14422-14427.
38. Sonnenburg, J.L., Chen, C.T., and Gordon, J.I. (2006). Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol 4, e413.
39. Sonnenburg, J.L., Xu, J., Leip, D.D., Chen, C.H., Westover, B.P., Weatherford, J., Buhler, J.D., and Gordon, J.I. (2005). Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307, 1955-1959.
40. Sun, J., Gunzer, F., Westendorf, A.M., Buer, J., Scharfe, M., Jarek, M., Gossling, F., Blocker, H., and Zeng, A.P. (2005). Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data. J Biotechnol 117, 147-161.
41. Tannock, G.W., Szylit, O., Duval, Y., and Raibaud, P. (1982). Colonization of tissue surfaces in the gastrointestinal tract of gnotobiotic animals by Lactobacillus strains. Can J Microbiol 28, 1196-1198.
42. von Buenau, R., Jaekel, L., Schubotz, E., Schwarz, S., Stroff, T., and Krueger, M. (2005). Escherichia coli strain Nissle 1917: Significant reduction of neonatal calf diarrhea. J Dairy Sci 88, 317-323.
43. Watanabe, T., Morotomi, M., Suegara, N., Kawai, Y., and Mutai, M. (1977). Distribution of indigenous Lactobacilli in the digestive tract of conventional and gnotobiotic rats. Microbiol Immunol 21, 183-191.
44. Wilson, M. (2005). Microbial Inhabitants of Humans: Their Ecology and Role in Health and Disease (Cambridge University Press, Cambridge, United Kingdom
45. Xu, J., Bjursell, M.K., Himrod, J., Deng, S., Carmichael, L.K., Chiang, H.C., Hooper, L.V., and Gordon, J.I. (2003). A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299, 2074-2076.
46. Yamano, T., Iino, H., Takada, M., Blum, S., Rochat, F., and Fukushima, Y. (2006). Improvement of the human intestinal flora by ingestion of the probiotic strain Lactobacillus johnsonii La1. Br J Nutr 95, 303-312.
47. Zhang, H., DiBaise, J.K., Zuccolo, A., Kudrna, D., Braidotti, M., Yu, Y., Parameswaran, P., Crowell, M.D., Wing, R., Rittmann, B.E., and Krajmalnik-Brown, R. (2009). Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci USA 106, 2365-2370.