Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection

Cell

Volumn 127, Issue 2, 2006, Pages 423-433

  Rawls, John F ^a   Mahowald, Michael A ^a   Ley, Ruth E ^a   Gordon, Jeffrey I ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; COMMUNITY STRUCTURE; CONTROLLED STUDY; FEMALE; FUNCTIONAL GENOMICS; GERMFREE ANIMAL; HABITAT SELECTION; HOST; INTESTINE FLORA; MICROBIAL COLONIZATION; MOUSE; NONHUMAN; POPULATION ABUNDANCE; POPULATION DYNAMICS; PREDICTION; PRIORITY JOURNAL; SPECIES COMPARISON; VERTEBRATE; ZEBRA FISH;

BACTERIA (MICROORGANISMS); DANIO RERIO; VERTEBRATA;

EID: 33749997498     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cell.2006.08.043     Document Type: Article

References (33)

1. Acinas S.G., Klepac-Ceraj V., Hunt D.E., Pharino C., Ceraj I., Distel D.L., and Polz M.F. Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430 (2004) 551-554
2. Axelrood P.E., Chow M.L., Radomski C.C., McDermott J.M., and Davies J. Molecular characterization of bacterial diversity from British Columbia forest soils subjected to disturbance. Can. J. Microbiol. 48 (2002) 655-674
3. Bäckhed F., Ding H., Wang T., Hooper L.V., Koh G.Y., Nagy A., Semenkovich C.F., and Gordon J.I. The gut microbiota as an environmental factor that regulates fat storage. Proc. Natl. Acad. Sci. USA 101 (2004) 15718-15723
4. Bäckhed F., Ley R.E., Sonnenburg J.L., Peterson D.A., and Gordon J.I. Host-bacterial mutualism in the human intestine. Science 307 (2005) 1915-1920
5. Bala A., Murphy P., and Giller K.E. Distribution and diversity of rhizobia nodulating agroforestry legumes in soils from three continents in the tropics. Mol. Ecol. 12 (2003) 917-929
6. Bates J.M., Mittge E., Kuhlman J., Baden K.N., Cheesman S.E., and Guillemin K. Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation. Dev. Biol. 297 (2006) 374-386
7. Cahill M.M. Bacterial flora of fishes: a review. Microb. Ecol. 19 (1990) 21-41
8. Cebra J.J. Influences of microbiota on intestinal immune system development. Am. J. Clin. Nutr. 69 (1999) 1046S-1051S
9. Colwell, R.K. (2005). EstimateS: Statistical estimation of species richness and shared species from samples (http://purl.oclc.org/estimates.
10. Curtis T.P., and Sloan W.T. Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology. Curr. Opin. Microbiol. 7 (2004) 221-226
11. Eckburg P.B., Bik E.M., Bernstein C.N., Purdom E., Dethlefsen L., Sargent M., Gill S.R., Nelson K.E., and Relman D.A. Diversity of the human intestinal microbial flora. Science 308 (2005) 1635-1638
12. Falush D., Wirth T., Linz B., Pritchard J.K., Stephens M., Kidd M., Blaser M.J., Graham D.Y., Vacher S., Perez-Perez G.I., et al. Traces of human migrations in Helicobacter pylori populations. Science 299 (2003) 1582-1585
13. Giannakis M., Stappenbeck T.S., Mills J.C., Leip D.G., Lovett M., Clifton S.W., Ippolito J.E., Glasscock J.I., Arumugam M., Brent M.R., and Gordon J.I. Molecular properties of adult mouse gastric and intestinal epithelial progenitors in their niches. J. Biol. Chem. 281 (2006) 11292-11300
14. Good I.J. The population frequencies of species and the estimation of population parameters. Biometrika 40 (1953) 237-264
15. Hooper L.V., and Gordon J.I. Commensal host-bacterial relationships in the gut. Science 292 (2001) 1115-1118
16. Hooper L.V., Mills J.C., Roth K.A., Stappenbeck T.S., Wong M.H., and Gordon J.I. Combining gnotobiotic mouse models with functional genomics to define the impact of the microflora on host physiology. Mol. Cell. Microbiol. 31 (2002) 559-589
17. Huber I., Spanggaard B., Appel K.F., Rossen L., Nielsen T., and Gram L. Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum). J. Appl. Microbiol. 96 (2004) 117-132
18. Hughes-Martiny J.B., Bohannan B.J., Brown J.H., Colwell R.K., Fuhrman J.A., Green J.L., Horner-Devine M.C., Kane M., Krumins J.A., Kuske C.R., et al. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4 (2006) 102-112
19. Ley R.E., Bäckhed F., Turnbaugh P., Lozupone C.A., Knight R.D., and Gordon J.I. Obesity alters gut microbial ecology. Proc. Natl. Acad. Sci. USA 102 (2005) 11070-11075
20. Ley R.E., Harris J.K., Wilcox J., Spear J.R., Miller S.R., Bebout B.M., Maresca J.A., Bryant D.A., Sogin M., and Pace N.R. Unexpected diversity and complexity from the Guerrero Negro hypersaline microbial mat. Appl. Environ. Microbiol. 72 (2006) 3685-3695
21. Ley R.E., Peterson D.A., and Gordon J.I. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124 (2006) 837-848
22. Lieschke G.J., Oates A.C., Crowhurst M.O., Ward A.C., and Layton J.E. Morphologic and functional characterization of granulocytes and macrophages in embryonic and adult zebrafish. Blood 98 (2001) 3087-3096
23. Lozupone C., and Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71 (2005) 8228-8235
24. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S., Jobb G., et al. ARB: a software environment for sequence data. Nucleic Acids Res. 32 (2004) 1363-1371
25. Patton E.E., and Zon L.I. The art and design of genetic screens: zebrafish. Nat. Rev. Genet. 2 (2001) 956-966
26. Peterson R.T., and Fishman M.C. Discovery and use of small molecules for probing biological processes in zebrafish. Methods Cell Biol. 76 (2004) 569-591
27. Rawls J.F., Samuel B.S., and Gordon J.I. Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. Proc. Natl. Acad. Sci. USA 101 (2004) 4596-4601
28. Romero J., and Navarrete P. 16S rDNA-based analysis of dominant bacterial populations associated with early life stages of coho salmon (Oncorhynchus kisutch). Microb. Ecol. 51 (2006) 422-430
29. Schloss P.D., and Handelsman J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71 (2005) 1501-1506
30. Sonnenburg J.L., Xu J., Leip D.D., Chen C.H., Westover B.P., Weatherford J., Buhler J.D., and Gordon J.I. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307 (2005) 1955-1959
31. *and Other Methods) (http://paup.csit.fsu.edu/) (Sunderland, MA: Sinauer Associates).
32. Wostmann B.S. The germfree animal in nutritional studies. Annu. Rev. Nutr. 1 (1981) 257-279
33. Xu J., Bjursell M.K., Himrod J., Deng S., Carmichael L.K., Chiang H.C., Hooper L.V., and Gordon J.I. A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299 (2003) 2074-2076