-
1
-
-
84876414806
-
The gut microbiota-masters of host development and physiology
-
Sommer F, Bäckhed F. 2013. The gut microbiota-masters of host development and physiology. Nat. Rev. Microbiol. 11:227-238. http://dx.doi.org/10.1038/nrmicro2974.
-
(2013)
Nat. Rev. Microbiol
, vol.11
, pp. 227-238
-
-
Sommer, F.1
Bäckhed, F.2
-
2
-
-
84861978076
-
Host-gut microbiota metabolic interactions
-
Nicholson JK, Holmes E, Kinross J, Burcelin R, Gibson G, Jia W, Pettersson S. 2012. Host-gut microbiota metabolic interactions. Science 336:1262-1267. http://dx.doi.org/10.1126/science.1223813.
-
(2012)
Science
, vol.336
, pp. 1262-1267
-
-
Nicholson, J.K.1
Holmes, E.2
Kinross, J.3
Burcelin, R.4
Gibson, G.5
Jia, W.6
Pettersson, S.7
-
3
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA. 2005. Diversity of the human intestinal microbial flora. Science 308:1635-1638. http://dx.doi.org/10.11 26/science.1110591.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
4
-
-
84890162498
-
Intestinal microbiota influence the early postnatal development of the enteric nervous system
-
Collins J, Borojevic R, Verdu EF, Huizinga JD, Ratcliffe EM. 2014. Intestinal microbiota influence the early postnatal development of the enteric nervous system. Neurogastroenterol. Motil. 26:98-107. http://dx.doi.org/10.1111/nmo.12236.
-
(2014)
Neurogastroenterol. Motil
, vol.26
, pp. 98-107
-
-
Collins, J.1
Borojevic, R.2
Verdu, E.F.3
Huizinga, J.D.4
Ratcliffe, E.M.5
-
5
-
-
84888212872
-
Differential induction of antimicrobial REGIII by the intestinal microbiota and Bifidobacterium breve NCC2950
-
Natividad JM, Hayes CL, Motta JP, Jury J, Galipeau HJ, Philip V, Garcia-Rodenas CL, Kiyama H, Bercik P, Verdu EF. 2013. Differential induction of antimicrobial REGIII by the intestinal microbiota and Bifidobacterium breve NCC2950. Appl. Environ. Microbiol. 79:7745-7754. http://dx.doi.org/10.1128/AEM.02470-13.
-
(2013)
Appl. Environ. Microbiol
, vol.79
, pp. 7745-7754
-
-
Natividad, J.M.1
Hayes, C.L.2
Motta, J.P.3
Jury, J.4
Galipeau, H.J.5
Philip, V.6
Garcia-Rodenas, C.L.7
Kiyama, H.8
Bercik, P.9
Verdu, E.F.10
-
6
-
-
84880790162
-
An analysis of the role of the indigenous microbiota in cholesterol gallstone pathogenesis
-
Fremont-Rahl JJ, Ge Z, Umana C, Whary MT, Taylor NS, Muthupalani S, Carey MC, Fox JG, Maurer KJ. 2013. An analysis of the role of the indigenous microbiota in cholesterol gallstone pathogenesis. PLoS One 8:e70657. http://dx.doi.org/10.1371/journal.pone.0070657.
-
(2013)
PLoS One
, vol.8
-
-
Fremont-Rahl, J.J.1
Ge, Z.2
Umana, C.3
Whary, M.T.4
Taylor, N.S.5
Muthupalani, S.6
Carey, M.C.7
Fox, J.G.8
Maurer, K.J.9
-
7
-
-
84885402118
-
Intestinal bacteria induce TSLP to promote mutualistic T-cell responses
-
Mosconi I, Geuking MB, Zaiss MM, Massacand JC, Aschwanden C, Kwong Chung CK, McCoy KD, Harris NL. 2013. Intestinal bacteria induce TSLP to promote mutualistic T-cell responses. Mucosal Immunol. 6:1157-1167. http://dx.doi.org/10.1038/mi.2013.12.
-
(2013)
Mucosal Immunol
, vol.6
, pp. 1157-1167
-
-
Mosconi, I.1
Geuking, M.B.2
Zaiss, M.M.3
Massacand, J.C.4
Aschwanden, C.5
Kwong Chung, C.K.6
McCoy, K.D.7
Harris, N.L.8
-
8
-
-
84863987697
-
Commensal and probiotic bacteria influence intestinal barrier function and susceptibility to colitis in Nod1-/-; Nod2-/-mice
-
Natividad JM, Petit V, Huang X, de Palma G, Jury J, Sanz Y, Philpott D, Garcia Rodenas CL, McCoy KD, Verdu EF. 2012. Commensal and probiotic bacteria influence intestinal barrier function and susceptibility to colitis in Nod1-/-; Nod2-/-mice. Inflamm. Bowel Dis. 18:1434-1446. http://dx.doi.org/10.1002/ibd.22848.
-
(2012)
Inflamm. Bowel Dis
, vol.18
, pp. 1434-1446
-
-
Natividad, J.M.1
Petit, V.2
Huang, X.3
de Palma, G.4
Jury, J.5
Sanz, Y.6
Philpott, D.7
Garcia Rodenas, C.L.8
McCoy, K.D.9
Verdu, E.F.10
-
9
-
-
79956315886
-
Intestinal bacterial colonization induces mutualistic regulatory T cell responses
-
Geuking MB, Cahenzli J, Lawson MA, Ng DC, Slack E, Hapfelmeier S, McCoy KD, Macpherson AJ. 2011. Intestinal bacterial colonization induces mutualistic regulatory T cell responses. Immunity 34:794-806. http://dx.doi.org/10.1016/j.immuni.2011.03.021.
-
(2011)
Immunity
, vol.34
, pp. 794-806
-
-
Geuking, M.B.1
Cahenzli, J.2
Lawson, M.A.3
Ng, D.C.4
Slack, E.5
Hapfelmeier, S.6
McCoy, K.D.7
Macpherson, A.J.8
-
10
-
-
34347264174
-
Helicobacter bilis triggers persistent immune reactivity to antigens derived from the commensal bacteria in gnotobiotic C3H/HeN mice
-
Jergens AE, Wilson-Welder JH, Dorn A, Henderson A, Liu Z, Evans RB, Hostetter J, Wannemuehler MJ. 2007. Helicobacter bilis triggers persistent immune reactivity to antigens derived from the commensal bacteria in gnotobiotic C3H/HeN mice. Gut 56:934-940. http://dx.doi.org/10.11 36/gut.2006.099242.
-
(2007)
Gut
, vol.56
, pp. 934-940
-
-
Jergens, A.E.1
Wilson-Welder, J.H.2
Dorn, A.3
Henderson, A.4
Liu, Z.5
Evans, R.B.6
Hostetter, J.7
Wannemuehler, M.J.8
-
11
-
-
78651189876
-
Association of germfree mice with bacteria isolated from normal mice
-
Schaedler RW, Dubos R, Costello R. 1965. Association of germfree mice with bacteria isolated from normal mice. J. Exp. Med. 122:77-82. http://dx.doi.org/10.1084/jem.122.1.77.
-
(1965)
J. Exp. Med
, vol.122
, pp. 77-82
-
-
Schaedler, R.W.1
Dubos, R.2
Costello, R.3
-
12
-
-
0002274807
-
Development of an "altered Schaedler flora" for NCI gnotobiotic rodents
-
Orcutt RP, Gianni FJ, Judge RJ. 1987. Development of an "altered Schaedler flora" for NCI gnotobiotic rodents. Microecol. Ther. 17:59.
-
(1987)
Microecol. Ther
, vol.17
, pp. 59
-
-
Orcutt, R.P.1
Gianni, F.J.2
Judge, R.J.3
-
13
-
-
0032803862
-
Phylogeny of the defined murine microbiota: altered Schaedler flora
-
Dewhirst FE, Chien CC, Paster BJ, Ericson RL, Orcutt RP, Schauer DB, Fox JG. 1999. Phylogeny of the defined murine microbiota: altered Schaedler flora. Appl. Environ. Microbiol. 65:3287-3292.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3287-3292
-
-
Dewhirst, F.E.1
Chien, C.C.2
Paster, B.J.3
Ericson, R.L.4
Orcutt, R.P.5
Schauer, D.B.6
Fox, J.G.7
-
14
-
-
2442701970
-
Spatial distribution and stability of the eight microbial species of the altered Schaedler flora in the mouse gastrointestinal tract
-
Sarma-Rupavtarm RB, Ge Z, Schauer DB, Fox JG, Polz MF. 2004. Spatial distribution and stability of the eight microbial species of the altered Schaedler flora in the mouse gastrointestinal tract. Appl. Environ. Microbiol. 70:2791-2800. http://dx.doi.org/10.1128/AEM.70.5.2791-280 0.2004.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 2791-2800
-
-
Sarma-Rupavtarm, R.B.1
Ge, Z.2
Schauer, D.B.3
Fox, J.G.4
Polz, M.F.5
-
15
-
-
33746102914
-
Colonization dynamics of altered Schaedler flora is influenced by gender, aging, and Helicobacter hepaticus infection in the intestines of Swiss Webster mice
-
Ge Z, Feng Y, Taylor NS, Ohtani M, Polz MF, Schauer DB, Fox JG. 2006 Colonization dynamics of altered Schaedler flora is influenced by gender, aging, and Helicobacter hepaticus infection in the intestines of Swiss Webster mice. Appl. Environ. Microbiol. 72:5100-5103. http://dx.doi.org/10.1128/AEM.01934-05.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 5100-5103
-
-
Ge, Z.1
Feng, Y.2
Taylor, N.S.3
Ohtani, M.4
Polz, M.F.5
Schauer, D.B.6
Fox, J.G.7
-
16
-
-
84868327508
-
Finished bacterial genomes from shotgun sequence data
-
Ribeiro FJ, Przybylski D, Yin S, Sharpe T, Gnerre S, Abouelleil A, Berlin AM, Montmayeur A, Shea TP, Walker BJ, Young SK, Russ C, Nusbaum C, MacCallum I, Jaffe DB. 2012. Finished bacterial genomes from shotgun sequence data. Genome Res. 22:2270-2277. http://dx.doi.org/10.110 1/gr.141515.112.
-
(2012)
Genome Res
, vol.22
, pp. 2270-2277
-
-
Ribeiro, F.J.1
Przybylski, D.2
Yin, S.3
Sharpe, T.4
Gnerre, S.5
Abouelleil, A.6
Berlin, A.M.7
Montmayeur, A.8
Shea, T.P.9
Walker, B.J.10
Young, S.K.11
Russ, C.12
Nusbaum, C.13
MacCallum, I.14
Jaffe, D.B.15
-
17
-
-
78650762588
-
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
-
Fisher S, Barry A, Abreu J, Minie B, Nolan J, Delorey TM, Young G, Fennell TJ, Allen A, Ambrogio L, Berlin AM, Blumenstiel B, Cibulskis K, Friedrich D, Johnson R, Juhn F, Reilly B, Shammas R, Stalker J, Sykes SM, Thompson J, Walsh J, Zimmer A, Zwirko Z, Gabriel S, Nicol R, Nusbaum C. 2011. A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries. Genome Biol. 12:R1. http://dx.doi.org/10.1186/gb-2011-12-1-r1.
-
(2011)
Genome Biol
, vol.12
, pp. R1
-
-
Fisher, S.1
Barry, A.2
Abreu, J.3
Minie, B.4
Nolan, J.5
Delorey, T.M.6
Young, G.7
Fennell, T.J.8
Allen, A.9
Ambrogio, L.10
Berlin, A.M.11
Blumenstiel, B.12
Cibulskis, K.13
Friedrich, D.14
Johnson, R.15
Juhn, F.16
Reilly, B.17
Shammas, R.18
Stalker, J.19
Sykes, S.M.20
Thompson, J.21
Walsh, J.22
Zimmer, A.23
Zwirko, Z.24
Gabriel, S.25
Nicol, R.26
Nusbaum, C.27
more..
-
18
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB. 2011. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. U. S. A. 108: 1513-1518. http://dx.doi.org/10.1073/pnas.1017351108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A
, vol.108
, pp. 1513-1518
-
-
Gnerre, S.1
MacCallum, I.2
Przybylski, D.3
Ribeiro, F.J.4
Burton, J.N.5
Walker, B.J.6
Sharpe, T.7
Hall, G.8
Shea, T.P.9
Sykes, S.10
Berlin, A.M.11
Aird, D.12
Costello, M.13
Daza, R.14
Williams, L.15
Nicol, R.16
Gnirke, A.17
Nusbaum, C.18
Lander, E.S.19
Jaffe, D.B.20
more..
-
19
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
Hyatt D, Chen G-L, LoCascio PF, Land ML, Larimer FW, Hauser LJ. 2010 Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. http://dx.doi.org/10.1186/14 71-2105-11-119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.-L.2
LoCascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
20
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
21
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen K, Hallin P, Rødland EA, Staerfeldt H-H, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Staerfeldt, H.-H.4
Rognes, T.5
Ussery, D.W.6
|