Movement and fixation of intestinal microbiota after administration of human feces to germfree mice

Applied and Environmental Microbiology

Volumn 71, Issue 6, 2005, Pages 3171-3178

  Kibe, Ryoko ^a,b   Sakamoto, Mitsuo ^b   Yokota, Hiroshi ^a   Ishikawa, Hiroki ^c   Aiba, Yuji ^c,d   Koga, Yasuhiro ^c   Benno, Yoshimi ^b  

^a RAKUNO GAKUEN UNIVERSITY   (Japan)

^b RIKEN BIORESOURCE CENTER   (Japan)

^c TOKAI UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^d Wakamoto Pharmaceutical Co Ltd   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; ECOLOGY; GENES; LIVING SYSTEMS STUDIES; METABOLISM; RNA;

HUMAN FLORA-ASSOCIATED (HFA); INTESTINAL BACTERIA; MICROBIOTA; MOUSE OFFSPRING;

MICROBIOLOGY;

RNA 16S;

MICROBIOLOGY;

ARTICLE; BACTERIAL METABOLISM; BACTERIUM CULTURE; BACTERIUM ISOLATION; CONTROLLED STUDY; CORIOBACTERIACEAE; FECES; FEMALE; GAMMAPROTEOBACTERIA; GENE SEQUENCE; GERMFREE ANIMAL; HUMAN; INTESTINE FLORA; LACTOBACILLUS; MALE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PROGENY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; VERTICAL TRANSMISSION;

ANIMALS; BACTERIA; DNA, BACTERIAL; FECES; GERM-FREE LIFE; HUMANS; INTESTINES; MICE; MICE, INBRED BALB C; MOLECULAR SEQUENCE DATA; MOVEMENT; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

CLOSTRIDIUM; CORIOBACTERIACEAE;

EID: 20444367601     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.6.3171-3178.2005     Document Type: Article

References (41)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Apajalahti, J. H. A., H. Kettunen, A. Kettunen, W. E. Holben, P. H. Nurminen, N. Rautonen, and M. Mutanen. 2002. Culture-independent microbial community analysis reveals that inulin in the diet primarily affects previously unknown bacteria in the mouse cecum. Appl. Environ. Microbiol. 68:4986-4995.
3. Clement, B. G., and C. L. Kitts. 2000. Isolating PCR-quality DNA from human feces with a soil DNA kit. BioTechniques 28:640-646.
4. Cole, J. R., B. Chai, T. L. Marsh, et al. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31:442-443.
5. Edwards, C. A., C. Rumney, M. Davies, A. M. Parrett, J. Dore, F. Martin, J. Schmitt, B. Stahl, E. Norin, T. Midtvedt, I. R. Rowland, P. Heavey, H. Köhler, B. Stocks, and H. Schroten. 2003. A human flora-associated rat model of the breast-fed infant gut. J. Pediatr. Gastroenterol. Nutr. 37:168-177.
6. Fujiwara, S., T. Hirota, H. Nakazato, T. Mizutani, and T. Mitsuoka. 1991. Effect of konjac mannan on intestinal microbial metabolism in mice bearing human flora and in conventional F344 rats. Food Chem. Toxicol. 29:601-606.
7. Gérard, P., F. Béguet, P. Lepercq, L. Rigottier-Gois, V. Rochet, C. Andrieux, and C. Juste. 2004. Gnotobiotic rats harboring human intestinal microbiota as a model for studying cholesterol-to-coprostanol conversion. FEMS Microbiol. Ecol. 47:337-343.
8. Godon, J. J., E. Zumstein, P. Dabert, F. Habouzit, and R. Moletta. 1997. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63:2802-2813.
9. Harris, M. A., C. A. Reddy, and G. R. Carter. 1976. Anaerobic bacteria from the large intestine of mice. Appl. Environ. Microbiol. 31:907-912.
10. Hayashi, H., M. Sakamoto, M. Kitahara, and Y. Benno. 2003. Molecular analysis of fecal microbiota in elderly individuals using 16A rDNA library and T-RFLP. Microbiol. Immunol. 47:557-570.
11. Heilig, H. G. H. J., E. G. Zoetendal, E. E. Vaughan, P. Marteau, A. D. L. Akkermans, and W. M. de Vos. 2002. Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl. Environ. Microbiol. 68:114-123.
12. Hirayama, K. 1999. Ex-germfree mice harboring intestine microbiota derived from other animal species as an experimental model for ecology and metabolism of intestinal bacteria. Exp. Anim. 48:219-227.
13. Hirayama, K., K. Itoh, E. Takahashi, and T. Mitsuoka. 1995. Comparison of composition of faecal microbiota and metabolism of faecal bacteria among 'human-flora-associated' mice inoculated with faeces from six different human donors. Microb. Ecol. Health Dis. 8:199-211.
14. Hirayama, K., K. Miyaji, S. Kawamura, K. Itoh, E. Takahashi, and T. Mitsuoka. 1995. Development of intestinal flora of human-flora-associated (HFA) mice in the intestine of their offspring. Exp. Anim. 44:219-222.
15. Imaoka, A., H. Satoyama, A. Takagi, S. Matsumoto, and Y. Umesaki. 2004. Improvement of human faecal flora-associated mouse model for evaluation of the functional foods. J. Appl. Mocrobiol. 96:656-663.
16. Itoh, K., T. Mitsuoka, K. Sudo, and K. Suzuki. 1983. Comparison of fecal flora of mice based upon different strains and different housing conditions. Z. Versuchstierkd. 25:135-146.
17. Kibe, R., M. Sakamoto, H. Hayashi, H. Yokota, and Y. Benno. 2004. Maturation of the murine cecal microbiota as revealed by terminal restriction fragment length polymorphism and 16S rRNA gene clone libraries. FEMS Microbial. Lett. 235:139-146.
18. Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. R. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons Ltd., Chichester, United Kingdom.
19. Lin, J. H., and D. C. Savage. 1984. Host specificity of the colonization of murine gastric epithelium by lactobacilli. FEMS Microbiol. Lett. 24:67-71.
20. Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
21. McConnell, M. A., and G. W. Tannock. 1991. Lactobacilli and azoreductase activity in the murine cecum. Appl. Environ. Microbiol. 57:3664-3665.
22. Mengoni, A., E. Grassi, and M. Bazzicalupo. 2002. Cloning method for taxonomic interpretation of T-RFLP. BioTechniques 33:990-992.
23. Mitsuoka, T. 1982. Recent trends in research on intestinal flora. Bifidobacteria Microflora 1:3-24.
24. Morishita, Y., T. Mitsuoka, C. Kaneuchi, S. Yamamoto, and M. Ogata. 1971. Specific establishment of Lactobacilli in the digestive tract of germ-free chickens. Jpn. J. Microbiol. 15:531-538.
25. Osborn, A. M., E. R. B. Moore, and K. N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
26. Paster, B. J., S. K. Boches, J. L. Galvin, R. E. Ericson, C. N. Lau, V. A. Levanos, A. Sahasrabudhe, and F. E. Dewhirst. 2001. Bacterial diversity in human subgingival plaque. J. Bacteriol. 183:3770-3783.
27. Pearson, W. R., and D. J. Lipman. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
28. Raibaud, P., R. Ducluzeau, F. Dubos, S. Hudault, H. Bewa, and M. C. Muller. 1980. Implantation of bacteria from the digestive tract of man and various animals into gnotobiotic mice. Am. J. Clin. Nutr. 33:2440-2447.
29. Roach, S., and G. W. Tannock. 1980. Anaerobic fusiform shaped bacteria isolated from the caecum of conventional mice. J. Appl. Bacteriol. 48:115-123.
30. Rowland, I. R., and R. Tanaka. 1993. The effects of transgalactosylated oligosaccharides on gut flora metabolism in rats associated with a human faecal microflora. J. Appl. Bacteriol. 74:667-674.
31. Rumney, C. J., and I. R. Rowland. 1992. In vivo and in vitro models of the human colonic flora. Crit. Rev. Food Sci. Nutr. 31:299-331.
32. Sait, L., M. Galic, R. A. Strugnell, and P. H. Janssen. 2003. Secretory antibodies do not affect the composition of bacterial microbiota in the terminal ileum of 10-week-old mice. Appl. Environ. Microbiol. 69:2100-2109.
33. Sakamoto, M., H. Hayashi, and Y. Benno. 2003. Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities. Microbiol. Immunol. 47:133-142.
34. Sakamoto, M., Y. Takeuchi, M. Umeda, I. Ishikawa, and Y. Benno. 2003. Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis. J. Med. Microbiol. 52:79-89.
35. Salzman, N. H., H. de Jong, Y. Paterson, H. J. Harmsen, G. W. Welling, and N. A. Bos. 2002. Analysis of 16S libraries of mouse gastrointestinal microflora reveals a large new group of mouse intestinal bacteria. Microbiology 148:3651-3660.
36. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
37. Suau, A., R. Bonnet, M. Sutren, J.-J. Godon, G. R. Gibson, M. D. Collins, and S. Dore. 1999. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65:4799-4807.
38. Tannock, G. W., M. P. Dashkevicz, and S. D. Feighner. 1989. Lactobacilli and bile salt hydrolase in the murine intestinal tract. Appl. Environ. Microbiol. 55:1848-1851.
39. Tannock, G. W., O. Szylit, Y. Duval, and P. Raibaud. 1982. Colonization of tissue surfaces in the gastrointestinal tract of gnotobiotic animals by lactobacillus strains. Can. J. Microbiol. 28:1196-1198.
40. Walter, J., C. Hertel, G. W. Tannock, C. M. Lis, K. Munro, and W. P. Hammes. 2001. Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 67:2578-2585.
41. Wong, W. C., D. J. Hentges, and S. H. Dougherty. 1996. Adequacy of the human faecal microbiota associated mouse as a model for studying the ecology of the human intestinal tract. Microb. Ecol. Health Dis. 9:187-198.