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Volumn 4, Issue 12, 2006, Pages 2213-2226

Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host

Author keywords

[No Author keywords available]

Indexed keywords

INTERFERON; MANNOSE; POLYSACCHARIDE; PROBIOTIC AGENT; TRANSCRIPTOME; XYLOSE;

EID: 33845508443     PISSN: 15457885     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.0040413     Document Type: Article
Times cited : (362)

References (38)
  • 1
    • 27744496670 scopus 로고    scopus 로고
    • Prebiotics and synbiotics in clinical medicine
    • Bengmark S, Martindale R (2005) Prebiotics and synbiotics in clinical medicine. Nutr Clin Pract 20: 244-261.
    • (2005) Nutr Clin Pract , vol.20 , pp. 244-261
    • Bengmark, S.1    Martindale, R.2
  • 2
    • 0031959714 scopus 로고    scopus 로고
    • Ecological control of the gastrointestinal tract. The role of probiotic flora
    • Bengmark S (1998) Ecological control of the gastrointestinal tract. The role of probiotic flora. Gut 42: 2-7.
    • (1998) Gut , vol.42 , pp. 2-7
    • Bengmark, S.1
  • 3
    • 0035151150 scopus 로고    scopus 로고
    • Probiotics in foods not containing milk or milk constituents, with special reference to Lactobacillus plantarum 299v
    • Molin G (2001) Probiotics in foods not containing milk or milk constituents, with special reference to Lactobacillus plantarum 299v. Am J Clin Nutr 73: 380S-385S.
    • (2001) Am J Clin Nutr , vol.73
    • Molin, G.1
  • 4
    • 0037136537 scopus 로고    scopus 로고
    • The effect of infections on susceptibility to autoimmune and allergic diseases
    • Bach JF (2002) The effect of infections on susceptibility to autoimmune and allergic diseases. N Engl J Med 347: 911-920.
    • (2002) N Engl J Med , vol.347 , pp. 911-920
    • Bach, J.F.1
  • 7
    • 0034982253 scopus 로고    scopus 로고
    • Clinical applications of probiotic agents
    • Saavedra JM (2001) Clinical applications of probiotic agents. Am J Clin Nutr 73: 1147S-1151S.
    • (2001) Am J Clin Nutr , vol.73
    • Saavedra, J.M.1
  • 9
    • 33646584137 scopus 로고    scopus 로고
    • Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
    • Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, et al. (2006) Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl Environ Microbiol 72: 3685-3695.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3685-3695
    • Ley, R.E.1    Harris, J.K.2    Wilcox, J.3    Spear, J.R.4    Miller, S.R.5
  • 10
    • 0020031173 scopus 로고
    • Enumeration of Methanobrevibacter smithii in human feces
    • Miller TL, Wolin MJ (1982) Enumeration of Methanobrevibacter smithii in human feces. Arch Microbiol 131: 14-18.
    • (1982) Arch Microbiol , vol.131 , pp. 14-18
    • Miller, T.L.1    Wolin, M.J.2
  • 11
    • 2942691956 scopus 로고    scopus 로고
    • Getting a grip on things: How do communities of bacterial symbionts become established in our intestine?
    • Sonnenburg JL, Angenent LT, Gordon JI (2004) Getting a grip on things: How do communities of bacterial symbionts become established in our intestine? Nat Immunol 5: 569-573.
    • (2004) Nat Immunol , vol.5 , pp. 569-573
    • Sonnenburg, J.L.1    Angenent, L.T.2    Gordon, J.I.3
  • 12
    • 0037470975 scopus 로고    scopus 로고
    • A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
    • Xu J, Bjursell MK, Himrod J, Deng S, Carmichael LK, et al. (2003) A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299: 2074-2076.
    • (2003) Science , vol.299 , pp. 2074-2076
    • Xu, J.1    Bjursell, M.K.2    Himrod, J.3    Deng, S.4    Carmichael, L.K.5
  • 13
    • 23744446233 scopus 로고    scopus 로고
    • Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis
    • Ben-Amor K, Heilig H, Smidt H, Vaughan EE, Abee T, et al. (2005) Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis. Appl Environ Microbiol 71: 4679-4689.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4679-4689
    • Ben-Amor, K.1    Heilig, H.2    Smidt, H.3    Vaughan, E.E.4    Abee, T.5
  • 14
    • 0037195083 scopus 로고    scopus 로고
    • The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
    • Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, et al. (2002) The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci U S A 99: 14422-14427.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14422-14427
    • Schell, M.A.1    Karmirantzou, M.2    Snel, B.3    Vilanova, D.4    Berger, B.5
  • 15
    • 0017128987 scopus 로고
    • Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers
    • Cato EP, Johnson JL (1976) Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers. Int J Syst Bacteriol 26: 230-237.
    • (1976) Int J Syst Bacteriol , vol.26 , pp. 230-237
    • Cato, E.P.1    Johnson, J.L.2
  • 17
    • 15544376418 scopus 로고    scopus 로고
    • Glycan foraging in vivo by an intestine-adapted bacterial symbiont
    • Sonnenburg JL, Xu J, Leip DD, Chen CH, Westover BP, et al. (2005) Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307: 1955-1959.
    • (2005) Science , vol.307 , pp. 1955-1959
    • Sonnenburg, J.L.1    Xu, J.2    Leip, D.D.3    Chen, C.H.4    Westover, B.P.5
  • 18
    • 0001973467 scopus 로고    scopus 로고
    • Carbohydrate-active enzymes: An integrated database approach
    • Gilbert HJ, Davies G, Henrissat B, Svensson B, editors. Cambridge: The Royal Society of Chemistry
    • Coutinho PM, Henrissat B (1999) Carbohydrate-active enzymes: An integrated database approach. Gilbert HJ, Davies G, Henrissat B, Svensson B, editors. Recent advances in carbohydrate bioengineering. Cambridge: The Royal Society of Chemistry. pp 3-12.
    • (1999) Recent Advances in Carbohydrate Bioengineering , pp. 3-12
    • Coutinho, P.M.1    Henrissat, B.2
  • 19
    • 0142026205 scopus 로고    scopus 로고
    • Inaugural article: Honor thy symbionts
    • Xu J, Gordon JI (2003) Inaugural article: Honor thy symbionts. Proc Natl Acad Sci U S A 100: 10452-10459.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 10452-10459
    • Xu, J.1    Gordon, J.I.2
  • 20
    • 21844433171 scopus 로고    scopus 로고
    • Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs
    • Boekhorst J, de Been MW, Kleerebezem M, Siezen RJ (2005) Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs. J Bacteriol 187: 4928-4934.
    • (2005) J Bacteriol , vol.187 , pp. 4928-4934
    • Boekhorst, J.1    De Been, M.W.2    Kleerebezem, M.3    Siezen, R.J.4
  • 21
    • 32044439116 scopus 로고    scopus 로고
    • Stable coexistence of five bacterial strains as a cellulose-degrading community
    • Kato S, Haruta S, Cui ZJ, Ishii M, Igarashi Y (2005) Stable coexistence of five bacterial strains as a cellulose-degrading community. Appl Environ Microbiol 71: 7099-7106.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7099-7106
    • Kato, S.1    Haruta, S.2    Cui, Z.J.3    Ishii, M.4    Igarashi, Y.5
  • 22
    • 0028063542 scopus 로고
    • Degradation and utilization of forage hemicellulose by rumen bacteria, singly in coculture or added sequentially
    • Fondevila M, Dehority BA (1994) Degradation and utilization of forage hemicellulose by rumen bacteria, singly in coculture or added sequentially. J Appl Bacteriol 77: 541-548.
    • (1994) J Appl Bacteriol , vol.77 , pp. 541-548
    • Fondevila, M.1    Dehority, B.A.2
  • 23
    • 0038347102 scopus 로고    scopus 로고
    • Social strife in the microbial world
    • Velicer GJ (2003) Social strife in the microbial world. Trends Microbiol 11: 330-337.
    • (2003) Trends Microbiol , vol.11 , pp. 330-337
    • Velicer, G.J.1
  • 24
  • 25
    • 8344249371 scopus 로고    scopus 로고
    • Molecular quantification of lactic acid bacteria in fermented milk products using real-time quantitative PCR
    • Furet JP, Quenee P, Tailliez P (2004) Molecular quantification of lactic acid bacteria in fermented milk products using real-time quantitative PCR. Int J Food Microbiol 97: 197-207.
    • (2004) Int J Food Microbiol , vol.97 , pp. 197-207
    • Furet, J.P.1    Quenee, P.2    Tailliez, P.3
  • 26
    • 0026569361 scopus 로고
    • Survival of bifidobacteria ingested via fermented milk during their passage through the human small intestine: An in vivo study using intestinal perfusion
    • Pochart P, Marteau P, Bouhnik Y, Goderel I, Bourlioux P, et al. (1992) Survival of bifidobacteria ingested via fermented milk during their passage through the human small intestine: An in vivo study using intestinal perfusion. Am J Clin Nutr 55: 78-80.
    • (1992) Am J Clin Nutr , vol.55 , pp. 78-80
    • Pochart, P.1    Marteau, P.2    Bouhnik, Y.3    Goderel, I.4    Bourlioux, P.5
  • 27
    • 0034093974 scopus 로고    scopus 로고
    • A colony immunoblotting method for quantitative detection of a Bifidobacterium animalis probiotic strain in human faeces
    • Duez H, Pelletier C, Cools S, Aissi E, Cayuela C, et al. (2000) A colony immunoblotting method for quantitative detection of a Bifidobacterium animalis probiotic strain in human faeces. J Appl Microbiol 88: 1019-1027.
    • (2000) J Appl Microbiol , vol.88 , pp. 1019-1027
    • Duez, H.1    Pelletier, C.2    Cools, S.3    Aissi, E.4    Cayuela, C.5
  • 28
    • 0036308496 scopus 로고    scopus 로고
    • Lactobacillus casei is able to survive and initiate protein synthesis during its transit in the digestive tract of human flora-associated mice
    • Oozeer R, Goupil-Feuillerat N, Alpert CA, van de Guchte M, Anba J, et al. (2002) Lactobacillus casei is able to survive and initiate protein synthesis during its transit in the digestive tract of human flora-associated mice. Appl Environ Microbiol 68: 3570-3574.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3570-3574
    • Oozeer, R.1    Goupil-Feuillerat, N.2    Alpert, C.A.3    Van De Guchte, M.4    Anba, J.5
  • 29
    • 11144294823 scopus 로고    scopus 로고
    • Role of ISG15 protease UBP43 (USP18) in innate immunity to viral infection
    • Ritchie KJ, Hahn CS, Kim KI, Yan M, Rosario D, et al. (2004) Role of ISG15 protease UBP43 (USP18) in innate immunity to viral infection. Nat Med 10: 1374-1378.
    • (2004) Nat Med , vol.10 , pp. 1374-1378
    • Ritchie, K.J.1    Hahn, C.S.2    Kim, K.I.3    Yan, M.4    Rosario, D.5
  • 30
    • 27644498395 scopus 로고    scopus 로고
    • Identification of interferon-stimulated gene 15 as an antiviral molecule during Sindbis virus infection in vivo
    • Lenschow DJ, Giannakopoulos NV, Gunn LJ, Johnston C, O'Guin AK, et al. (2005) Identification of interferon-stimulated gene 15 as an antiviral molecule during Sindbis virus infection in vivo. J Virol 79: 13974-13983.
    • (2005) J Virol , vol.79 , pp. 13974-13983
    • Lenschow, D.J.1    Giannakopoulos, N.V.2    Gunn, L.J.3    Johnston, C.4    O'Guin, A.K.5
  • 31
    • 31544443529 scopus 로고    scopus 로고
    • Bile-salt-stimulated lipase and mucins from milk of 'secretor' mothers inhibit the binding of Norwalk virus capsids to their carbohydrate ligands
    • Ruvoen-Clouet N, Mas E, Marionneau S, Guillon P, Lombardo D, et al. (2006) Bile-salt-stimulated lipase and mucins from milk of 'secretor' mothers inhibit the binding of Norwalk virus capsids to their carbohydrate ligands. Biochem J 393: 627-634.
    • (2006) Biochem J , vol.393 , pp. 627-634
    • Ruvoen-Clouet, N.1    Mas, E.2    Marionneau, S.3    Guillon, P.4    Lombardo, D.5
  • 32
    • 33748039462 scopus 로고    scopus 로고
    • Symbiotic bacteria direct expression of an intestinal bactericidal lectin
    • Cash HL, Whitham CV, Behrendt CL, Hooper LV (2006) Symbiotic bacteria direct expression of an intestinal bactericidal lectin. Science 313: 1126-1130.
    • (2006) Science , vol.313 , pp. 1126-1130
    • Cash, H.L.1    Whitham, C.V.2    Behrendt, C.L.3    Hooper, L.V.4
  • 33
  • 34
    • 35448950558 scopus 로고    scopus 로고
    • Combining gnotobiotic mouse models with functional genomics to define the impact of the microflora on host physiology
    • Sansonetti P, Zychlinsky A, editors. New York: Academic Press
    • Hooper LV, Mills JC, Roth KA, Stappenbeck TS, Wong MH, et al. (2002) Combining gnotobiotic mouse models with functional genomics to define the impact of the microflora on host physiology. In: Sansonetti P, Zychlinsky A, editors. Methods in microbiology. New York: Academic Press. pp. 559-589.
    • (2002) Methods in Microbiology , pp. 559-589
    • Hooper, L.V.1    Mills, J.C.2    Roth, K.A.3    Stappenbeck, T.S.4    Wong, M.H.5
  • 35
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li C, Wong WH (2001) Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc Natl Acad Sci U S A 98: 31-36.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 36
    • 0035687554 scopus 로고    scopus 로고
    • Assessing gene significance from cDNA microarray expression data via mixed models
    • Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, et al. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol 8: 625-637.
    • (2001) J Comput Biol , vol.8 , pp. 625-637
    • Wolfinger, R.D.1    Gibson, G.2    Wolfinger, E.D.3    Bennett, L.4    Hamadeh, H.5
  • 37
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440-9445.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 38
    • 0036408132 scopus 로고    scopus 로고
    • Laser capture microdissection of mouse intestine: Characterizing mRNA and protein expression, and profiling intermediary metabolism in specified cell populations
    • Stappenbeck TS, Hooper LV, Manchester JK, Wong MH, Gordon JI (2002) Laser capture microdissection of mouse intestine: Characterizing mRNA and protein expression, and profiling intermediary metabolism in specified cell populations. Methods Enzymol 356: 167-196.
    • (2002) Methods Enzymol , vol.356 , pp. 167-196
    • Stappenbeck, T.S.1    Hooper, L.V.2    Manchester, J.K.3    Wong, M.H.4    Gordon, J.I.5


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