The Mouse Genome Database (MGD): Facilitating mouse as a model for human biology and disease

Nucleic Acids Research

Volumn 43, Issue D1, 2015, Pages D726-D736

  Eppig, Janan T ^a   Blake, Judith A ^a   Bult, Carol J ^a   Kadin, James A ^a   Richardson, Joel E ^a   Anagnostopoulos, A ^b   Babiuk, R P ^b   Baldarelli, R M ^b   Beal, J S ^b   Bello, S M ^b   Berghout, J ^b   Blodgett, O ^b   Butler, N E ^b   Corbani, L E ^b   Cousins, S L ^b   Dene, H ^b   Drabkin, H J ^b   Forthofer, K L ^b   Hale, P ^b   Hutchins, L ^b   Knowlton, M ^b   Law, M ^b   Lewis, J R ^b   McAndrews, M ^b   Miers, D S ^b   Montenko, H ^b   Ni, L ^b   Onda, H ^b   Pittman, W ^b   Recla, J M ^b   Reed, D J ^b   Richards Smith, B ^b   Sitnikov, D ^b   Smith, C L ^b   Tomczuk, M ^b   Washburn, L L ^b   Zhu, Y ^b   more..

^a JACKSON LABORATORY   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

ALLELE; ARTICLE; DISEASE MODEL; GENETIC DATABASE; GENOME; GENOTYPE; INFORMATION RETRIEVAL; INFORMATION STORAGE; MOUSE GENOME DATABASE; MOUSE MODEL; MUTATION; PHENOTYPE; PRIORITY JOURNAL; WEB BROWSER; ANIMAL; ANIMAL MODEL; DISEASES; GENE; GENETICS; GENOMICS; HUMAN; INTERNET; MOUSE;

ALLELES; ANIMALS; DATABASES, GENETIC; DISEASE; GENES; GENOME; GENOMICS; HUMANS; INTERNET; MICE; MODELS, ANIMAL; MUTATION; PHENOTYPE;

EID: 84941069145     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku967     Document Type: Article

References (28)

1. Blake, J. A., Bult, C. J., Eppig, J. T., Kadin, J. A., Richardson, J. E. and The Mouse Genome Database Group. (2014) The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res., 42, D810-D817.
2. Bult, C. J., Eppig, J. T., Blake, J. A., Kadin, J. A., Richardson, J. E. and The Mouse Genome Database Group. (2013) The Mouse Genome Database: genotypes, phenotypes, and models of human disease. Nucleic Acids Res., 41, D885-D891.
3. Eppig, J. T., Blake, J. A., Bult, C. J., Kadin, J. A., Richardson, J. E. and The Mouse Genome Database Group. (2012) The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse. Nucleic Acids Res., 40, D881-D886.
4. Farrell, C. M., O'Leary, N. A., Harte, R. A., Loveland, J. E., Wilming, L. G., Wallin, C., Diekhans, M., Barrell, D., Searle, S. M., Aken, B. et al. (2014) Current status and new features of the Consensus Coding Sequence database. Nucleic Acids Res., 42, D865-D872.
5. Gene Ontology Consortium, Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Li, N., Sitnikov, D., Bridges, S., Burgess, S., Buza, T. et al. (2013) Gene Ontology annotations and resources. Nucleic Acids Res., 41, D530-D535.
6. Smith, C. L. and Eppig, J. T. (2012) The mammalian phenotype ontology as a unifying standard for experimental and high-throughput phenotyping data. Mamm. Genome, 23, 653-668.
7. ®). Hum. Mutat., 32, 564-567.
8. Smith, C. M., Finger, J. H., Hayamizu, T. F., McCright, I. J., Xu, J., Berghout, J., Campbell, J., Corbani, L. E., Forthofer, K. L., Frost, P. J. et al. (2014) The mouse Gene Expression Database (GXD):2014 update. Nucleic Acids Res., 42, D818-D824.
9. Begley, D. A., Krupke, D. M., Neuhauser, S. B., Richardson, J. E., Bult, C. J., Eppig, J. T and Sundberg, J. P. (2012) The Mouse Tumor Biology Database (MTB): a central electronic resource for locating and integrating mouse tumor pathology data. Vet. Pathol, 49, 218-223.
10. Murray, S. A., Eppig, J. T, Smedley, D, Simpson, E. M. and Rosenthal, N. (2012) Beyond knockouts: cre resources for conditional mutagenesis. Mamm. Genome, 23, 587-599.
11. Evsikov, A. V, Dolan, M. E., Genrich, M. P., Patek, E. and Bult, C. J. (2009) MouseCyc: a curated biochemical pathways database for the laboratory mouse. Genome Biol, 10, R84.
12. Strivens, M. and Eppig, J. T (2004) Visualizing the laboratory mouse: capturing phenotypic information. Genetica, 122, 89-97.
13. Skinner, M. E., Uzilov, A. V., Stein, L. D., Mungall, C. J. and Holmes, I. H. (2009) JBrowse: a next-generation genome browser. Genome Res., 19, 630-638.
14. Brown, S. D. M. and Moore, W. M. (2012) The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping. Mamm. Genome, 23, 632-640.
15. Hsu, S. D, Lin, F. M., Wu, W. Y, Liang, C, Huang, W. C, Chan, W. L., Tsai, W. T, Chen, G. Z., Lee, C J., Chiu, CM. et al. (2011) miRTarBase: a database curates experimentally validated microRNA-target interactions. Nucleic Acids Res, 39, D163-D169.
16. Reczko, M., Maragkakis, M., Alexiou, P, Grosse, I. and Hatzigeorgiou, A. G (2012) Functional microRNA targets in protein coding sequences. Bioinformatics, 28, 771-776.
17. Krek, A., Grun, D., Poy, M. N., Wolf, R., Rosenberg, L., Epstein, E. J., MacMenamin, P, da Piedade, I., Gunsalus, K. C, Stoffel, M. et al (2005) Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500.
18. Andrews, T. D., Whittle, B., Field, M. A., Balakishnan, B., Zhang, Y., Shao, Y., Cho, V., Kirk, M., Singh, M., Xia, Y. et al. (2012) Massively parallel sequencing of the mouse exome to accurately identify rare, induced mutations: an immediate source for thousands of new mous models. Open Biol., 2, 120061.
19. Arnold, C. N., Barnes, M. J., Berger, M., Blasius, A. L., Brandl, K., Croker, B., Crozat, K., Du, X., Eidenschenk, C., Georgel, P. et al. ENU-induced phenovariance in mice: inferences from 587 mutations (2012) BMC Res. Notes, 5, 577.
20. Bull, K. R., Rimmer, A. J., Siggs, O. M., Miosge, L. A., Roots, C. M., Enders, A., Bertram, E. M., Crockford, T. L., Whittle, B., Potter, P. K. et al. (2013) Unlocking the bottleneck in forward genetics using whole-genome sequencing and identity by descent to isolate causativ mutations. PLoS Genet., 9, e1003219.
21. Kaltman, J. R., Schramm, C. and Pearson, G. D. (2010) The National Heart, Lung, and Blood Institute Bench to Bassinet Program: a new paradigm for translational research. J. Am. Coll. Cardiol., 55, 1262-1265.
22. Portales-Casamar, E., Swanson, D. J., Liu, L., de Leeuw, C. N., Banks, K. G., Ho Sui, S. J., Fulton, D. L., Ali, J., Amirabbasi, M., Arenillas, D. J. et al. (2010) A regulatory toolbox of MiniPromoters to drive selective expression in the brain. Proc. Natl. Acad. Sci. U. S. A. 107, 16589-16594.
23. Gray, K. A., Daugherty, L. C., Gordon, S. M., Seal, R. L., Wright, M. W. and Bruford, E. A. (2013) Genenames.org: the HGNC resources in 2013. Nucleic Acids Res., 41, D545-D552.
24. Laulederkind, S. J., Hayman, G. T., Wang, S. J., Smith, J. R., Lowry, T. F., Nigam, R., Petri, V., de Pons, J., Dwinell, M. R., Shimoyama, M. et al. (2013) The Rat Genome Database 2013-data, tools and users. Brief Bioinform., 14, 520-526.
25. Bult, C. J., Eppig, J. T., Kadin, J. A., Richardson, J. E., Blake, J. A. and Mouse Genome Database Group. (2008) The Mouse Genome Database (MGD): mouse biology and model systems. Nucleic Acids Res., 36, D724-D728.
26. Bult, C. J., Kadin, J. A., Richardson, J. E., Blake, J. A., Eppig, J. T. and Mouse Genome Database Group. (2010) The Mouse Genome Database: enhancements and updates. Nucleic Acids Res., 38, D586-D592.
27. Smedley, D., Haider, S., Ballester, B., Holland, R., London, D., Thorisson, G. and Kasprzyk, A. (2009) BioMart-biological queries made easy. BMC Genom., 10, 22.
28. Sullivan, J., Karra, K., Moxon, S. A., Vallejos, A., Motenko, H., Wong, J. D., Aleksic, J., Balakrishnan, R., Binkley, G., Harris, T. et al. (2013) InterMOD: integrated data and tools for the unification of model organism research. Sci. Rep., 3, 1802.