-
1
-
-
0001347264
-
Some observations on the effect of folic acid antagonists on acute leukemia and other forms of incurable cancer
-
Farber S, (1949) Some observations on the effect of folic acid antagonists on acute leukemia and other forms of incurable cancer. Blood 4, 160-167.
-
(1949)
Blood
, vol.4
, pp. 160-167
-
-
Farber, S.1
-
2
-
-
84865992002
-
Antifolates in cancer therapy: Structure, activity and mechanisms of drug resistance
-
Gonen N, &, Assaraf YG, (2012) Antifolates in cancer therapy: structure, activity and mechanisms of drug resistance. Drug Resist Updat 15, 183-210.
-
(2012)
Drug Resist Updat
, vol.15
, pp. 183-210
-
-
Gonen, N.1
Assaraf, Y.G.2
-
3
-
-
0035542310
-
Dihydrofolate reductase: Structural aspects of mechanisms of enzyme catalysis and inhibition
-
Polshakov VI, (2001) Dihydrofolate reductase: structural aspects of mechanisms of enzyme catalysis and inhibition. Russ Chem Bull 50, 1733-1751.
-
(2001)
Russ Chem Bull
, vol.50
, pp. 1733-1751
-
-
Polshakov, V.I.1
-
4
-
-
1942423110
-
Antimicrobial dihydrofolate reductase inhibitors-achievements and future options: Review
-
Then RL, (2004) Antimicrobial dihydrofolate reductase inhibitors-achievements and future options: review. J Chemother 16, 3-12.
-
(2004)
J Chemother
, vol.16
, pp. 3-12
-
-
Then, R.L.1
-
5
-
-
0027750360
-
Structure-activity relationships of dihydrofolate reductase inhibitors
-
Bowden K, Harris NV, &, Watson CA, (1993) Structure-activity relationships of dihydrofolate reductase inhibitors. J Chemother 5, 377-388.
-
(1993)
J Chemother
, vol.5
, pp. 377-388
-
-
Bowden, K.1
Harris, N.V.2
Watson, C.A.3
-
6
-
-
0022410582
-
Polyglutamation of methotrexate. Is methotrexate a prodrug?
-
Chabner BA, Allegra CJ, Curt GA, Clendeninn NJ, Baram J, Koizumi S, Drake JC, &, Jolivet J, (1985) Polyglutamation of methotrexate. Is methotrexate a prodrug? J Clin Invest 76, 907-912.
-
(1985)
J Clin Invest
, vol.76
, pp. 907-912
-
-
Chabner, B.A.1
Allegra, C.J.2
Curt, G.A.3
Clendeninn, N.J.4
Baram, J.5
Koizumi, S.6
Drake, J.C.7
Jolivet, J.8
-
7
-
-
0025361947
-
Dihydrofolate reductase as a therapeutic target
-
Schweitzer BI, Dicker AP, &, Bertino JR, (1990) Dihydrofolate reductase as a therapeutic target. FASEB J 4, 2441-2452.
-
(1990)
FASEB J
, vol.4
, pp. 2441-2452
-
-
Schweitzer, B.I.1
Dicker, A.P.2
Bertino, J.R.3
-
8
-
-
0018852667
-
On the mechanism of action of folate- and biopterin-requiring enzymes
-
Benkovic SJ, (1980) On the mechanism of action of folate- and biopterin-requiring enzymes. Annu Rev Biochem 49, 227-251.
-
(1980)
Annu Rev Biochem
, vol.49
, pp. 227-251
-
-
Benkovic, S.J.1
-
9
-
-
0029944197
-
In search of dihydrofolate reductase
-
Huennekens FM, (1996) In search of dihydrofolate reductase. Protein Sci 5, 1201-1208.
-
(1996)
Protein Sci
, vol.5
, pp. 1201-1208
-
-
Huennekens, F.M.1
-
10
-
-
35948973555
-
Structural characteristics of antifolate dihydrofolate reductase enzyme interactions
-
Cody V, &, Schwalbe CH, (2006) Structural characteristics of antifolate dihydrofolate reductase enzyme interactions. Crystallogr Rev 12, 301-333.
-
(2006)
Crystallogr Rev
, vol.12
, pp. 301-333
-
-
Cody, V.1
Schwalbe, C.H.2
-
11
-
-
33644868469
-
Towards species-specific antifolates
-
Chan DC, &, Anderson AC, (2006) Towards species-specific antifolates. Curr Med Chem 13, 377-398.
-
(2006)
Curr Med Chem
, vol.13
, pp. 377-398
-
-
Chan, D.C.1
Anderson, A.C.2
-
12
-
-
0027202812
-
Dihydrofolate reductase from the pathogenic fungus Pneumocystis carinii: Catalytic properties and interaction with antifolates
-
Margosiak SA, Appleman JR, Santi DV, &, Blakley RL, (1993) Dihydrofolate reductase from the pathogenic fungus Pneumocystis carinii: catalytic properties and interaction with antifolates. Arch Biochem Biophys 305, 499-508.
-
(1993)
Arch Biochem Biophys
, vol.305
, pp. 499-508
-
-
Margosiak, S.A.1
Appleman, J.R.2
Santi, D.V.3
Blakley, R.L.4
-
13
-
-
0032749527
-
Design, synthesis, and evaluation of inhibitors of trypanosomal and leishmanial dihydrofolate reductase
-
Chowdhury SF, Villamor VB, Guerrero RH, Leal I, Brun R, Croft SL, Goodman JM, Maes L, Ruiz-Perez LM, Pacanowska DG, et al,. (1999) Design, synthesis, and evaluation of inhibitors of trypanosomal and leishmanial dihydrofolate reductase. J Med Chem 42, 4300-4312.
-
(1999)
J Med Chem
, vol.42
, pp. 4300-4312
-
-
Chowdhury, S.F.1
Villamor, V.B.2
Guerrero, R.H.3
Leal, I.4
Brun, R.5
Croft, S.L.6
Goodman, J.M.7
Maes, L.8
Ruiz-Perez, L.M.9
Pacanowska, D.G.10
-
14
-
-
34247516898
-
The role of tryptophan-48 in catalysis and binding of inhibitors of Plasmodium falciparum dihydrofolate reductase
-
Kamchonwongpaisan S, Vanichtanankul J, Taweechai S, Chitnumsub P, &, Yuthavong Y, (2007) The role of tryptophan-48 in catalysis and binding of inhibitors of Plasmodium falciparum dihydrofolate reductase. Int J Parasitol 37, 787-793.
-
(2007)
Int J Parasitol
, vol.37
, pp. 787-793
-
-
Kamchonwongpaisan, S.1
Vanichtanankul, J.2
Taweechai, S.3
Chitnumsub, P.4
Yuthavong, Y.5
-
15
-
-
0031472287
-
Trimetrexate: Review and current clinical experience in advanced colorectal cancer
-
Blanke CD, Messenger M, &, Taplin SC, (1997) Trimetrexate: review and current clinical experience in advanced colorectal cancer. Semin Oncol 24, S18-57-S18-63.
-
(1997)
Semin Oncol
, vol.24
, pp. S1857-S1863
-
-
Blanke, C.D.1
Messenger, M.2
Taplin, S.C.3
-
16
-
-
0023864356
-
Potent antipneumocystis and antitoxoplasma activities of piritrexim, a lipid-soluble antifolate
-
Kovacs JA, Allegra CJ, Swan JC, Drake JC, Parrillo JE, Chabner BA, &, Masur H, (1988) Potent antipneumocystis and antitoxoplasma activities of piritrexim, a lipid-soluble antifolate. Antimicrob Agents Chemother 32, 430-433.
-
(1988)
Antimicrob Agents Chemother
, vol.32
, pp. 430-433
-
-
Kovacs, J.A.1
Allegra, C.J.2
Swan, J.C.3
Drake, J.C.4
Parrillo, J.E.5
Chabner, B.A.6
Masur, H.7
-
17
-
-
35748932406
-
Recent advances in classical and non-classical antifolates as antitumor and antiopportunistic infection agents: Part i
-
Gangjee A, Jain HD, &, Kurup S, (2007) Recent advances in classical and non-classical antifolates as antitumor and antiopportunistic infection agents: part I. Anticancer Agents Med Chem 7, 524-542.
-
(2007)
Anticancer Agents Med Chem
, vol.7
, pp. 524-542
-
-
Gangjee, A.1
Jain, H.D.2
Kurup, S.3
-
18
-
-
41649110109
-
Recent advances in classical and non-classical antifolates as antitumor and antiopportunistic infection agents: Part II
-
Gangjee A, Jain HD, &, Kurup S, (2008) Recent advances in classical and non-classical antifolates as antitumor and antiopportunistic infection agents: part II. Anticancer Agents Med Chem 8, 205-231.
-
(2008)
Anticancer Agents Med Chem
, vol.8
, pp. 205-231
-
-
Gangjee, A.1
Jain, H.D.2
Kurup, S.3
-
19
-
-
80052042411
-
Antifolate agents: A patent review (2006-2010)
-
Wright DL, &, Anderson AC, (2011) Antifolate agents: a patent review (2006-2010). Expert Opin Ther Pat 21, 1293-1308.
-
(2011)
Expert Opin Ther Pat
, vol.21
, pp. 1293-1308
-
-
Wright, D.L.1
Anderson, A.C.2
-
20
-
-
84901264494
-
Antifolate agents: A patent review (2010-2013)
-
Anderson AC, &, Wright DL, (2014) Antifolate agents: a patent review (2010-2013). Expert Opin Ther Pat 24, 687-697.
-
(2014)
Expert Opin Ther Pat
, vol.24
, pp. 687-697
-
-
Anderson, A.C.1
Wright, D.L.2
-
21
-
-
81755179386
-
Prediction of residues involved in inhibitor specificity in the dihydrofolate reductase family
-
Goodey NM, Herbert KG, Hall SM, &, Bagley KC, (2011) Prediction of residues involved in inhibitor specificity in the dihydrofolate reductase family. Biochim Biophys Acta 1814, 1870-1879.
-
(2011)
Biochim Biophys Acta
, vol.1814
, pp. 1870-1879
-
-
Goodey, N.M.1
Herbert, K.G.2
Hall, S.M.3
Bagley, K.C.4
-
22
-
-
84879301337
-
Functional significance of evolving protein sequence in dihydrofolate reductase from bacteria to humans
-
Liu CT, Hanoian P, French JB, Pringle TH, Hammes-Schiffer S, &, Benkovic SJ, (2013) Functional significance of evolving protein sequence in dihydrofolate reductase from bacteria to humans. Proc Natl Acad Sci USA 110, 10159-10164.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 10159-10164
-
-
Liu, C.T.1
Hanoian, P.2
French, J.B.3
Pringle, T.H.4
Hammes-Schiffer, S.5
Benkovic, S.J.6
-
23
-
-
84891805328
-
PubChem BioAssay: 2014 update
-
Wang Y, Suzek T, Zhang J, Wang J, He S, Cheng T, Shoemaker BA, Gindulyte A, &, Bryant SH, (2014) PubChem BioAssay: 2014 update. Nucleic Acids Res 42, D1075-1082.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D1075-D1082
-
-
Wang, Y.1
Suzek, T.2
Zhang, J.3
Wang, J.4
He, S.5
Cheng, T.6
Shoemaker, B.A.7
Gindulyte, A.8
Bryant, S.H.9
-
24
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, &, Bourne PE, (2000) The Protein Data Bank. Nucleic Acids Res 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
25
-
-
84883481556
-
The Protein Model Portal-a comprehensive resource for protein structure and model information
-
Haas J, Roth S, Arnold K, Kiefer F, Schmidt T, Bordoli L, &, Schwede T, (2013) The Protein Model Portal-a comprehensive resource for protein structure and model information. Database (Oxford) 2013, bat031.
-
(2013)
Database (Oxford)
, vol.2013
, pp. bat031
-
-
Haas, J.1
Roth, S.2
Arnold, K.3
Kiefer, F.4
Schmidt, T.5
Bordoli, L.6
Schwede, T.7
-
26
-
-
33846876695
-
Relating protein pharmacology by ligand chemistry
-
Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, &, Shoichet BK, (2007) Relating protein pharmacology by ligand chemistry. Nat Biotechnol 25, 197-206.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 197-206
-
-
Keiser, M.J.1
Roth, B.L.2
Armbruster, B.N.3
Ernsberger, P.4
Irwin, J.J.5
Shoichet, B.K.6
-
27
-
-
41149103365
-
Binding similarity network of ligand
-
Park K, &, Kim D, (2008) Binding similarity network of ligand. Proteins 71, 960-971.
-
(2008)
Proteins
, vol.71
, pp. 960-971
-
-
Park, K.1
Kim, D.2
-
28
-
-
84860361165
-
Detecting overlapping protein complexes in protein-protein interaction networks
-
Nepusz T, Yu H, &, Paccanaro A, (2012) Detecting overlapping protein complexes in protein-protein interaction networks. Nat Methods 9, 471-472.
-
(2012)
Nat Methods
, vol.9
, pp. 471-472
-
-
Nepusz, T.1
Yu, H.2
Paccanaro, A.3
-
29
-
-
11144328151
-
Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle
-
Venkitakrishnan RP, Zaborowski E, McElheny D, Benkovic SJ, Dyson HJ, &, Wright PE, (2004) Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle. Biochemistry 43, 16046-16055.
-
(2004)
Biochemistry
, vol.43
, pp. 16046-16055
-
-
Venkitakrishnan, R.P.1
Zaborowski, E.2
McElheny, D.3
Benkovic, S.J.4
Dyson, H.J.5
Wright, P.E.6
-
30
-
-
60649117152
-
PocketMatch: A new algorithm to compare binding sites in protein structures
-
Yeturu K, &, Chandra N, (2008) PocketMatch: a new algorithm to compare binding sites in protein structures. BMC Bioinformatics 9, 543.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 543
-
-
Yeturu, K.1
Chandra, N.2
-
31
-
-
84888607543
-
PocketMatch (version 2.0): A parallel algorithm for the detection of structural similarities between protein ligand binding-sites
-
In, IEEE
-
Nagarajan D, &, Chandra N, (2013) PocketMatch (version 2.0): a parallel algorithm for the detection of structural similarities between protein ligand binding-sites. In Parallel Computing Technologies (PARCOMPTECH), 2013 National Conference on, pp. 1-6. IEEE.
-
(2013)
Parallel Computing Technologies (PARCOMPTECH), 2013 National Conference on
, pp. 1-6
-
-
Nagarajan, D.1
Chandra, N.2
-
32
-
-
66549119395
-
Advances and pitfalls of protein structural alignment
-
Hasegawa H, &, Holm L, (2009) Advances and pitfalls of protein structural alignment. Curr Opin Struct Biol 19, 341-348.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 341-348
-
-
Hasegawa, H.1
Holm, L.2
-
33
-
-
0023860163
-
A gene for dihydrofolate reductase in a herpesvirus
-
Trimble JJ, Murthy SC, Bakker A, Grassmann R, &, Desrosiers RC, (1988) A gene for dihydrofolate reductase in a herpesvirus. Science 239, 1145-1147.
-
(1988)
Science
, vol.239
, pp. 1145-1147
-
-
Trimble, J.J.1
Murthy, S.C.2
Bakker, A.3
Grassmann, R.4
Desrosiers, R.C.5
-
34
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks GE, Hon G, Chandonia J-M, &, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Res 14, 1188-1190.
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
35
-
-
0023931977
-
Crystal structure of human dihydrofolate reductase complexed with folate
-
Oefner C, D'Arcy A, &, Winkler FK, (1988) Crystal structure of human dihydrofolate reductase complexed with folate. Eur J Biochem 174, 377-385.
-
(1988)
Eur J Biochem
, vol.174
, pp. 377-385
-
-
Oefner, C.1
D'Arcy, A.2
Winkler, F.K.3
-
36
-
-
77956107320
-
Inhibition of antibiotic-resistant Staphylococcus aureus by the broad-spectrum dihydrofolate reductase inhibitor RAB1
-
Bourne CR, Barrow EW, Bunce RA, Bourne PC, Berlin KD, &, Barrow WW, (2010) Inhibition of antibiotic-resistant Staphylococcus aureus by the broad-spectrum dihydrofolate reductase inhibitor RAB1. Antimicrob Agents Chemother 54, 3825-3833.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 3825-3833
-
-
Bourne, C.R.1
Barrow, E.W.2
Bunce, R.A.3
Bourne, P.C.4
Berlin, K.D.5
Barrow, W.W.6
-
37
-
-
33751092267
-
New insights into DHFR interactions: Analysis of Pneumocystis carinii and mouse DHFR complexes with NADPH and two highly potent 5-(omega-carboxy(alkyloxy) trimethoprim derivatives reveals conformational correlations with activity and novel parallel ring stacking interactions
-
Cody V, Pace J, Chisum K, &, Rosowsky A, (2006) New insights into DHFR interactions: analysis of Pneumocystis carinii and mouse DHFR complexes with NADPH and two highly potent 5-(omega-carboxy(alkyloxy) trimethoprim derivatives reveals conformational correlations with activity and novel parallel ring stacking interactions. Proteins 65, 959-969.
-
(2006)
Proteins
, vol.65
, pp. 959-969
-
-
Cody, V.1
Pace, J.2
Chisum, K.3
Rosowsky, A.4
-
38
-
-
67649981785
-
Crystal structure of Bacillus anthracis dihydrofolate reductase with the dihydrophthalazine-based trimethoprim derivative RAB1 provides a structural explanation of potency and selectivity
-
Bourne CR, Bunce RA, Bourne PC, Berlin KD, Barrow EW, &, Barrow WW, (2009) Crystal structure of Bacillus anthracis dihydrofolate reductase with the dihydrophthalazine-based trimethoprim derivative RAB1 provides a structural explanation of potency and selectivity. Antimicrob Agents Chemother 53, 3065-3073.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 3065-3073
-
-
Bourne, C.R.1
Bunce, R.A.2
Bourne, P.C.3
Berlin, K.D.4
Barrow, E.W.5
Barrow, W.W.6
-
39
-
-
84886013433
-
Elucidating features that drive the design of selective antifolates using crystal structures of human dihydrofolate reductase
-
Lamb KM, G-Dayanandan N, Wright DL, &, Anderson AC, (2013) Elucidating features that drive the design of selective antifolates using crystal structures of human dihydrofolate reductase. Biochemistry 52, 7318-7326.
-
(2013)
Biochemistry
, vol.52
, pp. 7318-7326
-
-
Lamb, K.M.1
G-Dayanandan, N.2
Wright, D.L.3
Anderson, A.C.4
-
40
-
-
84873707989
-
Structural analysis of the active sites of dihydrofolate reductase from two species of Candida uncovers ligand-induced conformational changes shared among species
-
Paulsen JL, Viswanathan K, Wright DL, &, Anderson AC, (2013) Structural analysis of the active sites of dihydrofolate reductase from two species of Candida uncovers ligand-induced conformational changes shared among species. Bioorg Med Chem Lett 23, 1279-1284.
-
(2013)
Bioorg Med Chem Lett
, vol.23
, pp. 1279-1284
-
-
Paulsen, J.L.1
Viswanathan, K.2
Wright, D.L.3
Anderson, A.C.4
-
41
-
-
64349092862
-
Correlations of inhibitor kinetics for Pneumocystis jirovecii and human dihydrofolate reductase with structural data for human active site mutant enzyme complexes
-
Cody V, Pace J, Makin J, Piraino J, Queener SF, &, Rosowsky A, (2009) Correlations of inhibitor kinetics for Pneumocystis jirovecii and human dihydrofolate reductase with structural data for human active site mutant enzyme complexes. Biochemistry 48, 1702-1711.
-
(2009)
Biochemistry
, vol.48
, pp. 1702-1711
-
-
Cody, V.1
Pace, J.2
Makin, J.3
Piraino, J.4
Queener, S.F.5
Rosowsky, A.6
-
42
-
-
33745094315
-
Mycobacterium tuberculosis dihydrofolate reductase is a target for isoniazid
-
Argyrou A, Vetting MW, Aladegbami B, &, Blanchard JS, (2006) Mycobacterium tuberculosis dihydrofolate reductase is a target for isoniazid. Nat Struct Mol Biol 13, 408-413.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 408-413
-
-
Argyrou, A.1
Vetting, M.W.2
Aladegbami, B.3
Blanchard, J.S.4
-
43
-
-
63649118857
-
X-ray structure of the ternary MTX.NADPH complex of the anthrax dihydrofolate reductase: A pharmacophore for dual-site inhibitor design
-
Bennett BC, Wan Q, Ahmad MF, Langan P, &, Dealwis CG, (2009) X-ray structure of the ternary MTX.NADPH complex of the anthrax dihydrofolate reductase: a pharmacophore for dual-site inhibitor design. J Struct Biol 166, 162-171.
-
(2009)
J Struct Biol
, vol.166
, pp. 162-171
-
-
Bennett, B.C.1
Wan, Q.2
Ahmad, M.F.3
Langan, P.4
Dealwis, C.G.5
-
44
-
-
37249000795
-
Incorporating dynamics in E. coli dihydrofolate reductase enhances structure-based drug discovery
-
Lerner MG, Bowman AL, &, Carlson HA, (2007) Incorporating dynamics in E. coli dihydrofolate reductase enhances structure-based drug discovery. J Chem Inf Model 47, 2358-2365.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 2358-2365
-
-
Lerner, M.G.1
Bowman, A.L.2
Carlson, H.A.3
-
45
-
-
0025037428
-
Crystal structures of recombinant human dihydrofolate reductase complexed with folate and 5-deazafolate
-
Davies JF II, Delcamp TJ, Prendergast NJ, Ashford VA, Freisheim JH, &, Kraut J, (1990) Crystal structures of recombinant human dihydrofolate reductase complexed with folate and 5-deazafolate. Biochemistry 29, 9467-9479.
-
(1990)
Biochemistry
, vol.29
, pp. 9467-9479
-
-
Davies, I.I.J.F.1
Delcamp, T.J.2
Prendergast, N.J.3
Ashford, V.A.4
Freisheim, J.H.5
Kraut, J.6
-
46
-
-
33847794168
-
Highly efficient ligands for dihydrofolate reductase from Cryptosporidium hominis and Toxoplasma gondii inspired by structural analysis
-
Pelphrey PM, Popov VM, Joska TM, Beierlein JM, Bolstad ES, Fillingham YA, Wright DL, &, Anderson AC, (2007) Highly efficient ligands for dihydrofolate reductase from Cryptosporidium hominis and Toxoplasma gondii inspired by structural analysis. J Med Chem 50, 940-950.
-
(2007)
J Med Chem
, vol.50
, pp. 940-950
-
-
Pelphrey, P.M.1
Popov, V.M.2
Joska, T.M.3
Beierlein, J.M.4
Bolstad, E.S.5
Fillingham, Y.A.6
Wright, D.L.7
Anderson, A.C.8
-
47
-
-
57349181229
-
Synthetic and crystallographic studies of a new inhibitor series targeting Bacillus anthracis dihydrofolate reductase
-
Beierlein JM, Frey KM, Bolstad DB, Pelphrey PM, Joska TM, Smith AE, Priestley ND, Wright DL, &, Anderson AC, (2008) Synthetic and crystallographic studies of a new inhibitor series targeting Bacillus anthracis dihydrofolate reductase. J Med Chem 51, 7532-7540.
-
(2008)
J Med Chem
, vol.51
, pp. 7532-7540
-
-
Beierlein, J.M.1
Frey, K.M.2
Bolstad, D.B.3
Pelphrey, P.M.4
Joska, T.M.5
Smith, A.E.6
Priestley, N.D.7
Wright, D.L.8
Anderson, A.C.9
-
48
-
-
80052636582
-
Crystal structures of Candida albicans dihydrofolate reductase bound to propargyl-linked antifolates reveal the flexibility of active site loop residues critical for ligand potency and selectivity
-
Paulsen JL, Bendel SD, &, Anderson AC, (2011) Crystal structures of Candida albicans dihydrofolate reductase bound to propargyl-linked antifolates reveal the flexibility of active site loop residues critical for ligand potency and selectivity. Chem Biol Drug Des 78, 505-512.
-
(2011)
Chem Biol Drug des
, vol.78
, pp. 505-512
-
-
Paulsen, J.L.1
Bendel, S.D.2
Anderson, A.C.3
-
49
-
-
51649118086
-
Structure-guided development of efficacious antifungal agents targeting Candida glabrata dihydrofolate reductase
-
Liu J, Bolstad DB, Smith AE, Priestley ND, Wright DL, &, Anderson AC, (2008) Structure-guided development of efficacious antifungal agents targeting Candida glabrata dihydrofolate reductase. Chem Biol 15, 990-996.
-
(2008)
Chem Biol
, vol.15
, pp. 990-996
-
-
Liu, J.1
Bolstad, D.B.2
Smith, A.E.3
Priestley, N.D.4
Wright, D.L.5
Anderson, A.C.6
-
50
-
-
63449108992
-
Crystal structures of wild-type and mutant methicillin-resistant Staphylococcus aureus dihydrofolate reductase reveal an alternate conformation of NADPH that may be linked to trimethoprim resistance
-
Frey KM, Liu J, Lombardo MN, Bolstad DB, Wright DL, &, Anderson AC, (2009) Crystal structures of wild-type and mutant methicillin-resistant Staphylococcus aureus dihydrofolate reductase reveal an alternate conformation of NADPH that may be linked to trimethoprim resistance. J Mol Biol 387, 1298-1308.
-
(2009)
J Mol Biol
, vol.387
, pp. 1298-1308
-
-
Frey, K.M.1
Liu, J.2
Lombardo, M.N.3
Bolstad, D.B.4
Wright, D.L.5
Anderson, A.C.6
-
51
-
-
80053512597
-
Open Babel: An open chemical toolbox
-
O'Boyle NM, Banck M, James CA, Morley C, Vandermeersch T, &, Hutchison GR, (2011) Open Babel: an open chemical toolbox. J Cheminform 3, 33.
-
(2011)
J Cheminform
, vol.3
, pp. 33
-
-
O'Boyle, N.M.1
Banck, M.2
James, C.A.3
Morley, C.4
Vandermeersch, T.5
Hutchison, G.R.6
-
52
-
-
38949150854
-
Matt: Local flexibility AIDS protein multiple structure alignment
-
Menke M, Berger B, &, Cowen L, (2008) Matt: local flexibility aids protein multiple structure alignment. PLoS Comput Biol 4, e10.
-
(2008)
PLoS Comput Biol
, vol.4
, pp. e10
-
-
Menke, M.1
Berger, B.2
Cowen, L.3
-
53
-
-
79960739917
-
PocketAlign a novel algorithm for aligning binding sites in protein structures
-
Yeturu K, &, Chandra N, (2011) PocketAlign a novel algorithm for aligning binding sites in protein structures. J Chem Inf Model 51, 1725-1736.
-
(2011)
J Chem Inf Model
, vol.51
, pp. 1725-1736
-
-
Yeturu, K.1
Chandra, N.2
-
54
-
-
0036681416
-
Scoring residue conservation
-
Valdar WS, (2002) Scoring residue conservation. Proteins 48, 227-241.
-
(2002)
Proteins
, vol.48
, pp. 227-241
-
-
Valdar, W.S.1
-
55
-
-
79551587720
-
Cytoscape 2.8: New features for data integration and network visualization
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, &, Ideker T, (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27, 431-432.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
56
-
-
82355186299
-
NNScore 2.0: A neural-network receptor-ligand scoring function
-
Durrant JD, &, McCammon JA, (2011) NNScore 2.0: a neural-network receptor-ligand scoring function. J Chem Inf Model 51, 2897-2903.
-
(2011)
J Chem Inf Model
, vol.51
, pp. 2897-2903
-
-
Durrant, J.D.1
McCammon, J.A.2
-
57
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev V, Sorokine A, Prilusky J, Abola EE, &, Edelman M, (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics 15, 327-332.
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
59
-
-
70349932423
-
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
-
Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, &, Olson AJ, (2009) AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem 30, 2785-2791.
-
(2009)
J Comput Chem
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
Olson, A.J.7
-
60
-
-
84864409038
-
Synthesis and biological activity of substituted 2, 4-diaminopyrimidines that inhibit Bacillus anthracis
-
Nammalwar B, Bunce RA, Berlin KD, Bourne CR, Bourne PC, Barrow EW, &, Barrow WW, (2012) Synthesis and biological activity of substituted 2, 4-diaminopyrimidines that inhibit Bacillus anthracis. Eur J Med Chem 54, 387-396.
-
(2012)
Eur J Med Chem
, vol.54
, pp. 387-396
-
-
Nammalwar, B.1
Bunce, R.A.2
Berlin, K.D.3
Bourne, C.R.4
Bourne, P.C.5
Barrow, E.W.6
Barrow, W.W.7
-
61
-
-
84896883894
-
The structure and competitive substrate inhibition of dihydrofolate reductase from Enterococcus faecalis reveal restrictions to cofactor docking
-
Bourne CR, Wakeham N, Webb N, Nammalwar B, Bunce RA, Berlin KD, &, Barrow WW, (2014) The structure and competitive substrate inhibition of dihydrofolate reductase from Enterococcus faecalis reveal restrictions to cofactor docking. Biochemistry 53, 1228-1238.
-
(2014)
Biochemistry
, vol.53
, pp. 1228-1238
-
-
Bourne, C.R.1
Wakeham, N.2
Webb, N.3
Nammalwar, B.4
Bunce, R.A.5
Berlin, K.D.6
Barrow, W.W.7
-
62
-
-
58149083887
-
Probing the active site of Candida glabrata dihydrofolate reductase with high resolution crystal structures and the synthesis of new inhibitors
-
Liu J, Bolstad DB, Smith AE, Priestley ND, Wright DL, &, Anderson AC, (2009) Probing the active site of Candida glabrata dihydrofolate reductase with high resolution crystal structures and the synthesis of new inhibitors. Chem Biol Drug Des 73, 62-74.
-
(2009)
Chem Biol Drug des
, vol.73
, pp. 62-74
-
-
Liu, J.1
Bolstad, D.B.2
Smith, A.E.3
Priestley, N.D.4
Wright, D.L.5
Anderson, A.C.6
-
63
-
-
78651103069
-
Structural analysis of Pneumocystis carinii and human DHFR complexes with NADPH and a series of five potent 6-[5′-(ω-carboxyalkoxy) benzyl] pyrido [2, 3-d] pyrimidine derivatives
-
Cody V, &, Pace J, (2011) Structural analysis of Pneumocystis carinii and human DHFR complexes with NADPH and a series of five potent 6-[5′-(ω-carboxyalkoxy) benzyl] pyrido [2, 3-d] pyrimidine derivatives. Acta Crystallogr D Biol Crystallogr 67, 1-7.
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, pp. 1-7
-
-
Cody, V.1
Pace, J.2
-
64
-
-
0042320464
-
Pyrimethamine analogs as strong inhibitors of double and quadruple mutants of dihydrofolate reductase in human malaria parasites
-
Sardarian A, Douglas KT, Read M, Sims PF, Hyde JE, Chitnumsub P, Sirawaraporn R, &, Sirawaraporn W, (2003) Pyrimethamine analogs as strong inhibitors of double and quadruple mutants of dihydrofolate reductase in human malaria parasites. Org Biomol Chem 1, 960-964.
-
(2003)
Org Biomol Chem
, vol.1
, pp. 960-964
-
-
Sardarian, A.1
Douglas, K.T.2
Read, M.3
Sims, P.F.4
Hyde, J.E.5
Chitnumsub, P.6
Sirawaraporn, R.7
Sirawaraporn, W.8
|