-
1
-
-
38949166332
-
A review of high throughput technology for the screening of natural products
-
DOI 10.1016/j.biopha.2007.06.012, PII S0753332207001278
-
Mishra, K. P.; Ganju, L.; Sairam, M.; Banerjee, P. K.; Sawhney, R. C. A review of high throughput technology for the screening of natural products Biomed. Pharmacother. 2008, 62 (2) 94-8 (Pubitemid 351215811)
-
(2008)
Biomedicine and Pharmacotherapy
, vol.62
, Issue.2
, pp. 94-98
-
-
Mishra, K.P.1
Ganju, L.2
Sairam, M.3
Banerjee, P.K.4
Sawhney, R.C.5
-
2
-
-
33646943202
-
Molecular dynamics: Survey of methods for simulating the activity of proteins
-
DOI 10.1021/cr040426m
-
Adcock, S. A.; McCammon, J. A. Molecular dynamics: survey of methods for simulating the activity of proteins Chem. Rev. 2006, 106 (5) 1589-1615 (Pubitemid 43792773)
-
(2006)
Chemical Reviews
, vol.106
, Issue.5
, pp. 1589-1615
-
-
Adcock, S.A.1
McCammon, J.A.2
-
3
-
-
40149090181
-
Computational study of the mechanism and the relative free energies of binding of anticholesteremic inhibitors to squalene-hopene cyclase
-
DOI 10.1021/bi702067h
-
Schwab, F.; van Gunsteren, W. F.; Zagrovic, B. Computational study of the mechanism and the relative free energies of binding of anticholesteremic inhibitors to squalene-hopene cyclase Biochemistry 2008, 47 (9) 2945-51 (Pubitemid 351328847)
-
(2008)
Biochemistry
, vol.47
, Issue.9
, pp. 2945-2951
-
-
Schwab, F.1
Van Gunsteren, W.F.2
Zagrovic, B.3
-
4
-
-
33845290650
-
FEP-guided selection of bicyclic heterocycles in lead optimization for non-nucleoside inhibitors of HIV-1 reverse transcriptase
-
DOI 10.1021/ja066472g
-
Kim, J. T.; Hamilton, A. D.; Bailey, C. M.; Domaoal, R. A.; Wang, L.; Anderson, K. S.; Jorgensen, W. L. FEP-guided selection of bicyclic heterocycles in lead optimization for non-nucleoside inhibitors of HIV-1 reverse transcriptase J. Am. Chem. Soc. 2006, 128 (48) 15372-15373 (Pubitemid 44876003)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.48
, pp. 15372-15373
-
-
Kim, J.T.1
Hamilton, A.D.2
Bailey, C.M.3
Domoal, R.A.4
Wang, L.5
Anderson, K.S.6
Jorgensen, W.L.7
-
5
-
-
80054950510
-
Molecular Dynamics Simulations and Drug Discovery
-
Durrant, J. D.; McCammon, J. A. Molecular Dynamics Simulations and Drug Discovery BMC Biol. 2011, 9, 71
-
(2011)
BMC Biol.
, vol.9
, pp. 71
-
-
Durrant, J.D.1
McCammon, J.A.2
-
6
-
-
77958585233
-
NNScore: A Neural-Network-Based Scoring Function for the Characterization of Protein-Ligand Complexes
-
Durrant, J. D.; McCammon, J. A. NNScore: A Neural-Network-Based Scoring Function for the Characterization of Protein-Ligand Complexes J. Chem. Inf. Model. 2010, 50 (10) 1865-1871
-
(2010)
J. Chem. Inf. Model.
, vol.50
, Issue.10
, pp. 1865-1871
-
-
Durrant, J.D.1
McCammon, J.A.2
-
7
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris, G. M.; Goodsell, D. S.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function J. Comput. Chem. 1998, 19 (14) 1639-1662 (Pubitemid 128590223)
-
(1998)
Journal of Computational Chemistry
, vol.19
, Issue.14
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
8
-
-
33748276474
-
Protein-ligand docking: Current status and future challenges
-
DOI 10.1002/prot.21082
-
Sousa, S. F.; Fernandes, P. A.; Ramos, M. J. Protein-ligand docking: current status and future challenges Proteins 2006, 65 (1) 15-26 (Pubitemid 44320611)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 15-26
-
-
Sousa, S.F.1
Fernandes, P.A.2
Ramos, M.J.3
-
9
-
-
76149120388
-
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
-
Trott, O.; Olson, A. J. AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading J. Comput. Chem. 2009, 31 (2) 455-461
-
(2009)
J. Comput. Chem.
, vol.31
, Issue.2
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
10
-
-
79953277006
-
BINANA: A novel algorithm for ligand-binding characterization
-
Durrant, J. D.; McCammon, J. A. BINANA: A novel algorithm for ligand-binding characterization J. Mol. Graphics Modell. 2011, 29 (6) 888-93
-
(2011)
J. Mol. Graphics Modell.
, vol.29
, Issue.6
, pp. 888-893
-
-
Durrant, J.D.1
McCammon, J.A.2
-
11
-
-
23044480075
-
Binding MOAD (Mother of All Databases)
-
DOI 10.1002/prot.20512
-
Hu, L.; Benson, M. L.; Smith, R. D.; Lerner, M. G.; Carlson, H. A. Binding MOAD (Mother Of All Databases) Proteins 2005, 60 (3) 333-340 (Pubitemid 41061630)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.60
, Issue.3
, pp. 333-340
-
-
Hu, L.1
Benson, M.L.2
Smith, R.D.3
Lerner, M.G.4
Carlson, H.A.5
-
12
-
-
2542530042
-
The PDBbind database: Collection of binding affinities for protein-ligand complexes with known three-dimensional structures
-
DOI 10.1021/jm030580l
-
Wang, R.; Fang, X.; Lu, Y.; Wang, S. The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures J. Med. Chem. 2004, 47 (12) 2977-2980 (Pubitemid 38702694)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.12
, pp. 2977-2980
-
-
Wang, R.1
Fang, X.2
Lu, Y.3
Wang, S.4
-
13
-
-
20444422149
-
The PDBbind database: Methodologies and updates
-
DOI 10.1021/jm048957q
-
Wang, R.; Fang, X.; Lu, Y.; Yang, C. Y.; Wang, S. The PDBbind database: methodologies and updates J. Med. Chem. 2005, 48 (12) 4111-4119 (Pubitemid 40800619)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.12
, pp. 4111-4119
-
-
Wang, R.1
Fang, X.2
Lu, Y.3
Yang, C.-Y.4
Wang, S.5
-
14
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank Nucleic Acids Res. 2000, 28 (1) 235-242 (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
15
-
-
33750991346
-
Benchmarking sets for molecular docking
-
DOI 10.1021/jm0608356
-
Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking sets for molecular docking J. Med. Chem. 2006, 49 (23) 6789-801 (Pubitemid 44749746)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.23
, pp. 6789-6801
-
-
Huang, N.1
Shoichet, B.K.2
Irwin, J.J.3
-
16
-
-
17144385534
-
Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4
-
DOI 10.1021/jm049092j
-
Triballeau, N.; Acher, F.; Brabet, I.; Pin, J. P.; Bertrand, H. O. Virtual screening workflow development guided by the ′receiver operating characteristic′ curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4 J. Med. Chem. 2005, 48 (7) 2534-2547 (Pubitemid 40520517)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.7
, pp. 2534-2547
-
-
Triballeau, N.1
Acher, F.2
Brabet, I.3
Pin, J.-P.4
Bertrand, H.-O.5
-
17
-
-
70749085066
-
F2PY: A tool for connecting Fortran and Python programs
-
Peterson, P. F2PY: a tool for connecting Fortran and Python programs Int. J. Comput. Mater. Sci. Surf. Eng. 2009, 4 (4) 296-305
-
(2009)
Int. J. Comput. Mater. Sci. Surf. Eng.
, vol.4
, Issue.4
, pp. 296-305
-
-
Peterson, P.1
-
18
-
-
84859383235
-
-
0.6; Technical University of Lodz (Poland): Lodz, Poland, (accessed October 11, 2011).
-
Wojciechowski, M. FFNET: Feed-Forward Neural Network for Python, 0.6; Technical University of Lodz (Poland): Lodz, Poland, 2007; http://ffnet. sourceforge.net/ (accessed October 11, 2011).
-
(2007)
FFNET: Feed-Forward Neural Network for Python
-
-
Wojciechowski, M.1
-
19
-
-
0021481124
-
Newton-like minimization via the Lanczos method
-
Nash, S. G. Newton-like minimization via the Lanczos method SIAM J. Numer. Anal. 1984, 21, 770-788
-
(1984)
SIAM J. Numer. Anal.
, vol.21
, pp. 770-788
-
-
Nash, S.G.1
-
20
-
-
77954343124
-
Computer-Aided Identification of Trypanosoma brucei Uridine Diphosphate Galactose 4′-Epimerase Inhibitors: Toward the Development of Novel Therapies for African Sleeping Sickness
-
Durrant, J. D.; Urbaniak, M. D.; Ferguson, M. A.; McCammon, J. A. Computer-Aided Identification of Trypanosoma brucei Uridine Diphosphate Galactose 4′-Epimerase Inhibitors: Toward the Development of Novel Therapies for African Sleeping Sickness J. Med. Chem. 2010, 53 (13) 5025-5032
-
(2010)
J. Med. Chem.
, vol.53
, Issue.13
, pp. 5025-5032
-
-
Durrant, J.D.1
Urbaniak, M.D.2
Ferguson, M.A.3
McCammon, J.A.4
|