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Volumn , Issue , 2013, Pages

PocketMatch (version 2.0): A parallel algorithm for the detection of structural similarities between protein ligand binding-sites

Author keywords

3D substructure matching; Drug discovery; Molecular recognition; Structural bioinformatics

Indexed keywords

3D SUBSTRUCTURE MATCHING; DRUG DISCOVERY; INTER-ATOMIC DISTANCES; LIGAND-BINDING SITES; PROTEIN-LIGAND INTERACTIONS; STRUCTURAL BIOINFORMATICS; STRUCTURAL DESCRIPTORS; STRUCTURAL SIMILARITY;

EID: 84888607543     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ParCompTech.2013.6621397     Document Type: Conference Paper
Times cited : (18)

References (10)
  • 1
    • 50949122245 scopus 로고    scopus 로고
    • Bridging protein local structures and protein functions
    • Liu, Z., et al., "Bridging protein local structures and protein functions,", Amino acids (2008) v35(3) p. 627-650.
    • (2008) Amino Acids , vol.35 , Issue.3 , pp. 627-650
    • Liu, Z.1
  • 2
    • 0041620372 scopus 로고    scopus 로고
    • Annotation in three dimensions. PINTS: Patterns in non-homologous tertiary structures
    • Alexander, S., Russel, R.B., "Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures,", Nucleic Acids Research (2003) v31(13) p. 3341-3344.
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3341-3344
    • Alexander, S.1    Russel, R.B.2
  • 3
    • 0033613813 scopus 로고    scopus 로고
    • Recognition of spatial motifs in protein structures
    • Kleywegt G.J., "Recognition of Spatial Motifs in Protein Structures,", J. Mol. Biol. (1999) v 285 p 1877-1897.
    • (1999) J. Mol. Biol. , vol.285 , pp. 1877-1897
    • Kleywegt, G.J.1
  • 4
    • 45349108801 scopus 로고    scopus 로고
    • Functional classification of protein kinase binding sites using cavbase
    • Kuhn D., et. al., "Functional classification of protein kinase binding sites using Cavbase,", ChenMedChem (2007) v2(10) p. 1432-1447.
    • (2007) ChenMedChem , vol.2 , Issue.10 , pp. 1432-1447
    • Kuhn, D.1
  • 5
    • 60649117152 scopus 로고    scopus 로고
    • PocketMatch: A new algorithm to compare binding sites in protein structures
    • Yeturu K., Chandra N., "PocketMatch: a new algorithm to compare binding sites in protein structures,", BMC Bioinformatics (2008) v9 p. 543.
    • (2008) BMC Bioinformatics , vol.9 , pp. 543
    • Yeturu, K.1    Chandra, N.2
  • 6
    • 84864422110 scopus 로고    scopus 로고
    • PocketAnnotate: Towards site-based function annotation
    • Jul (Web Server issue): W400-8
    • Anand, P., Yeturu, K., Chandra, N., "PocketAnnotate: towards site-based function annotation,", Nucleic Acids Research (2012) Jul; 40 (Web Server issue): W400-8.
    • (2012) Nucleic Acids Research , pp. 40
    • Anand, P.1    Yeturu, K.2    Chandra, N.3
  • 7
    • 0345059376 scopus 로고    scopus 로고
    • Announcing the worldwide protein data bank
    • Berman, H.M., et. al., "Announcing the worldwide Protein Data Bank,", Nature Structural Biology (2003) v10(12) p. 980.
    • (2003) Nature Structural Biology , vol.10 , Issue.12 , pp. 980
    • Berman, H.M.1
  • 8
    • 84893482610 scopus 로고
    • A solution of the best rotation to relate two sets of vectors
    • W. Kabsch "A solution of the best rotation to relate two sets of vectors,", Acta Crystallographica (1976) A32, 922-923.
    • (1976) Acta Crystallographica , vol.A32 , pp. 922-923
    • Kabsch, W.1
  • 9
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package (Version 3.2)
    • Felsenstein, J., "PHYLIP - Phylogeny Inference Package (Version 3.2),", Cladistics (1989) v5 p. 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 10
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin A.G., et. al., "SCOP: a structural classification of proteins database for the investigation of sequences and structures,", J. Mol. Biol (1995) v247 p. 536-540.
    • (1995) J. Mol. Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.