Recent developments in biocatalysis beyond the laboratory

Biotechnology Letters

Volumn 37, Issue 5, 2015, Pages 943-954

  Narancic, Tanja ^a   Davis, Reeta ^b   Nikodinovic Runic, Jasmina ^c   O’ Connor, Kevin E ^a  

^a UNIVERSITY COLLEGE DUBLIN   (Ireland)

^b TRINITY COLLEGE DUBLIN   (Ireland)

^c UNIVERSITY OF BELGRADE   (Serbia)

Author keywords

Biocatalysis; Enzyme expression; Immobilization; Lipases; Protein engineering; Transaminases; Transglutaminase

Indexed keywords

BIOCATALYSTS; CATALYSIS; ENZYME IMMOBILIZATION; GENETIC ENGINEERING; HYDROGELS; LIPASES; PLANTS (BOTANY); RADIOACTIVE WASTE VITRIFICATION;

ADVANCED MATERIALS; BIOCATALYSIS; BIOCATALYST IMMOBILIZATION; BIOCATALYTIC PROCESS; BIODIESEL PRODUCTION; PROTEIN ENGINEERING; TRANSAMINASES; TRANSGLUTAMINASES;

BIOCHEMICAL ENGINEERING;

IMMOBILIZED ENZYME;

BIOCATALYSIS; BIOTECHNOLOGY; GENE EXPRESSION; METABOLISM; PROCEDURES; PROTEIN ENGINEERING; TRENDS;

BIOCATALYSIS; BIOTECHNOLOGY; ENZYMES, IMMOBILIZED; GENE EXPRESSION; PROTEIN ENGINEERING;

EID: 84934955293     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-014-1762-4     Document Type: Review

References (73)

1. Adachi D, Koh F, Hama S, Ogino C, Kondo A (2013) A robust whole-cell biocatalyst that introduces a thermo- and solvent-tolerant lipase into Aspergillus oryzae cells: characterization and application to enzymatic biodiesel production. Enzym Microb Technol 52:331–335
2. Brena BM, Batista-Viera F (2006) Immobilization of enzymes. In: Guisan JM (ed) Methods in biotechnology: immobilization of enzymes and cells, vol 22, 2nd edn. Humana Press Inc, Totowa
3. Buettner K, Hertel TC, Pietzsch M (2012) Increased thermostability of microbial transglutaminase by combination of several hot spots evolved by random and saturation mutagenesis. Amino Acids 42:987–996
4. Chattopadhyay S, Sen R (2013) Development of a novel integrated continuous reactor system for biocatalytic production of biodiesel. Bioresour Technol 147:395–400
5. Christopher LP, Kumar H, Zambare VP (2014) Enzymatic biodiesel: challenges and opportunities. Appl Energy 119:497–520
6. Clare DA, Daubert CR (2011) Expanded functionality of modified whey protein dispersions after transglutaminase catalysis. J Food Sci 76:C576–C584
7. Dach R, Song JHJ, Roschangar F, Samstag W, Senanayake CH (2012) The eight criteria defining a good chemical manufacturing process. Org Process Res Dev 16:1697–1706
8. de Goes-Favoni S, Bueno FR (2014) Microbial transglutaminase: general characteristics and performance in food processing technology. Food Biotechnol 28:1–24
9. De Jong GAH, Koppelman SJ (2002) Transglutaminase catalyzed reactions: impact on food applications. J Food Sci 67:2798–2806
10. Di Pierro P, Rossi Marquez G, Mariniello L, Sorrentino A, Villalonga R, Porta R (2013) Effect of transglutaminase on the mechanical and barrier properties of whey protein/pectin films prepared at complexation pH. J Agr Food Chem 61:4593–4598
11. Dunn PJ (2012) The importance of green chemistry in process research and development. Chem Soc Rev 41(4):1452–1461
12. Erickson DP, Campanella OH, Hamaker BR (2012) Functionalizing maize zein in viscoelastic dough systems through fibrous, beta-sheet-rich protein networks: an alternative, physicochemical approach to gluten-free breadmaking. Trends Food Sci Technol 24:74–81
13. Frodsham L, Golden M, Hard S, Kenworthy MN, Klauber DJ, Leslie K, Macleod C, Meadows RE, Mulholland KR, Reilly J, Squire C, Tomasi S, Watt D, Wells AS (2013) Use of omega-transaminase enzyme chemistry in the synthesis of a JAK2 kinase inhibitor. Org Process Res Dev 17:1123–1130
14. Gerrard JA, Fayle SE, Brown PA, Sutton KH, Simmons L, Rasiah I (2001) Effects of microbial transglutaminase on the wheat proteins of bread and croissant dough. J Food Sci 66:782–786
15. Giosafatto CVL, Rigby NM, Wellner N, Ridout M, Husband F, Mackie AR (2012) Microbial transglutaminase-mediated modification of ovalbumin. Food Hydrocoll 26:261–267
16. Girardin M, Ouellet SG, Gauvreau D, Moore JC, Hughes G, Devine PN, O’shea PD, Campeau LC (2013) Convergent kilogram-scale synthesis of dual orexin receptor antagonist. Org Process Res Dev 17:61–68
17. Gog A, Roman M, Tos M, Paizs C, Irimie FD (2012) Biodiesel production using enzymatic transesterification—current state and perspectives. Renew Energy 39:10–16
18. Green AP, Turner NJ, O’Reilly E (2014) Chiral amine synthesis using omega-transaminases: an amine donor that displaces equilibria and enables high-throughput screening. Angew Chem Int Ed Engl 53:10714–10717
19. Hama S, Kondo A (2013) Enzymatic biodiesel production: an overview of potential feedstocks and process development. Bioresour Technol 135:386–395
20. Han LH, Cheng YQ, Qiu S, Tatsumi E, Shen Q, Lu ZH, Li LT (2013) The effects of vital wheat gluten and transglutaminase on the thermomechanical and dynamic rheological properties of buckwheat dough. Food Bioprocess Technol 6:561–569
21. Heredia-Sandoval NG, Islas-Rubio AR, Cabrera-Chavez F, De la Barca AMC (2014) Transamidation of gluten proteins during the bread-making process of wheat flour to produce breads with less immunoreactive gluten. Food Funct 5:1813–1818
22. Hervé G, Agneta F, Yves D (2011) Biofuels and World Agricultural Markets: outlook for 2020 and 2050. In: Bernardes MADS (ed) Economic effects of biofuel production. doi: 10.5772/20581 InTech, Rijeka
23. Huang J, Xia J, Yang Z, Guan F, Cui D, Guan G, Jiang W, Li Y (2014) Improved production of a recombinant Rhizomucor miehei lipase expressed in Pichia pastoris and its application for conversion of microalgae oil to biodiesel. Biotechnol Biofuels 7:111
24. Huisman GW, Collier SJ (2013) On the development of new biocatalytic processes for practical pharmaceutical synthesis. Curr Opin Chem Biol 17:284–292
25. Hwang BY, Kim BG (2004) High-throughput screening method for the identification of active and enantioselective omega-transaminases. Enzyme Micro Technol 34:429–436
26. Hwang YT, Qi F, Yuan C, Zhao X, Ramkrishna D, Liu D, Varma A (2014) Lipase catalyzed process for biodiesel production: protein engineering and lipase production. Biotechnol Bioeng 111:639–653
27. Illanes A, Cauerhff A, Wilson L, Castro GR (2012) Recent trends in biocatalysis engineering. Bioresour Technol 115:48–57
28. James J, Simpson BK (1996) Application of enzymes in food processing. Crit Rev Food Sci Nutr 36:437–463
29. Jegannathan KR, Nielsen PH (2013) Environmental assessment of enzyme use in industrial production: a literature review. J Cleaner Prod 42:228–240
30. Jin Z, Han SY, Zhang L, Zheng SP, Wang Y, Lin Y (2013) Combined utilization of lipase displaying Pichia pastoris whole-cell biocatalysts to improve biodiesel production in co solvent media. Bioresour Technol 130:102–109
31. Kanaji T, Ozaki H, Takano T, Ide H, Motoki M, Shimonishi Y (1993) Primary structure of microbial transglutaminase from Streptoverticillium sp. strain S-8112. J Biol Chem 268:11565–11572
32. Kieliszek M, Misiewicz A (2014) Microbial transglutaminase and its application in the food industry: a review. Folia Microbiol 59:241–250
33. Kohls H, Steffen-Munsberg F, Hohne M (2014) Recent achievements in developing the biocatalytic toolbox for chiral amine synthesis. Curr Opin Chem Biol 19:180–192
34. Korman TP, Sahachartsiri B, Charbonneau DM, Huang GL, Beauregard M, Bowie JU (2013) Dieselzymes: development of a stable and methanol tolerant lipase for biodiesel production by directed evolution. Biotechnol Biofuels 6:70
35. Kroutil W, Fischereder EM, Fuchs CS, Lechner H, Mutti FG, Pressnitz D, Rajagopalan A, Sattler JH, Simon RC, Siirola E (2013) Asymmetric preparation of prim-, sec-, and tert-amines employing selected biocatalysts. Org Process Res Dev 17(5):751–759
36. Kuraishi C, Yamazaki K, Susa Y (2001) Transglutaminase: its utilization in the food industry. Food Rev Int 17:221–246
37. Lee M, Lee D, Cho J, Kim S, Park C (2013) Enzymatic biodiesel synthesis in semi-pilot continuous process in near-critical carbon dioxide. Appl Biochem Biotechnol 171:1118–1127
38. Lim TJ, Easa A-M, Karim A-A, Bhat R, Liong M-T (2011) Development of soy-based cream cheese via the addition of microbial transglutaminase, soy protein isolate and maltodextrin. Br Food J 113:1147–1172
39. Lv Y, Lin Z, Tan T, Svec F (2014) Preparation of reusable bioreactors using reversible immobilization of enzyme on monolithic porous polymer support with attached gold nanoparticles. Biotechnol Bioeng 111:50–58
40. Mangion IK, Sherry BD, Yin J, Fleitz FJ (2012) Enantioselective synthesis of a dual orexin receptor antagonist. Org Lett 14:3458–3461
41. Markets and Markets (2013) Food enzymes market by types (carbohydrase, protease, lipase), applications (beverages, dairy, bakery), sources (microorganisms, plants, animals), and geography—Global trends and forecasts to, 2018, vol FB 1264. Markets and Markets, Dallas
42. Martins IM, Matos M, Costa R, Silva F, Pascoal A, Estevinho LM, Choupina AB (2014) Transglutamineses: recent achievements and new sources. Appl Microbiol Biotechnol 98:6957–6964
43. Mathew S, Shin G, Shon M, Yun H (2013) High throughput screening methods for ω-transaminases. Biotech Bioprocess Eng 18:1–7
44. Meadows RE, Mulholland KR, Schurmann M, Golden M, Kierkels H, Meulenbroeks E, Mink D, May O, Squire C, Straatman H, Wells AS (2013) Efficient synthesis of (S)-1-(5-Fluoropyrimidin-2-yl)ethylamine using an omega-transaminase biocatalyst in a two-phase system. Org Process Res Dev 17:1117–1122
45. Midelfort KS, Kumar R, Han S, Karmilowicz MJ, McConnell K, Gehlhaar DK, Mistry A, Chang JS, Anderson M, Villalobos A, Minshull J, Govindarajan S, Wong JW (2013) Redesigning and characterizing the substrate specificity and activity of Vibrio fluvialis aminotransferase for the synthesis of imagabalin. Protein Eng Des Sel 26:25–33
46. Nestl BM, Nebel BA, Hauer B (2011) Recent progress in industrial biocatalysis. Curr Opin Chem Biol 15:187–193
47. Nestl BM, Hammer SC, Nebel BA, Hauer B (2014) New generation of biocatalysts for organic synthesis. Angew Chem Int Ed Engl 53:3070–3095
48. Ngo TPN, Li A, Tiew KW, Li Z (2013) Efficient transformation of grease to biodiesel using highly active and easily recyclable magnetic nanobiocatalyst aggregates. Bioresour Technol 145:233–239
49. Olivier CE, Lima RP, Pinto DG, Santos RA, Silva GK, Lorena SL, Villas-Boas MB, Netto FM, Zollner Rde L (2012) In search of a tolerance-induction strategy for cow’s milk allergies: significant reduction of beta-lactoglobulin allergenicity via transglutaminase/cysteine polymerization. Clinics 67:1171–1179
50. Peng X (2013) Improved thermostability of lipase B from Candida antarctica by directed evolution and display on yeast surface. Appl Biochem Biotechnol 169:351–358
51. Rachel NM, Pelletier JN (2013) Biotechnological applications of transglutaminases. Biomolecules 3:870–888
52. Ramos OS, Malcata FX (2011) Food-grade enzymes. In: Moo-Young M, Butler M, Webb BC et al (eds) Comprehensive Biotechnology. Academic Press, Burlington
53. Renzetti S, Behr J, Vogel RF, Barbiroli A, Iametti S, Bonomi F, Arendt EK (2012) Transglutaminase treatment of brown rice flour: a chromatographic, electrophoretic and spectroscopic study of protein modifications. Food Chem 131:1076–1085
54. Rouhi AM (2004) Chiral chemistry: traditional methods thrive despite numerous hurdles, including tough luck, slow commercialization of catalytic processes. Chem Eng News 82:47–62
55. Rudat J, Brucher BR, Syldatk C (2012) Transaminases for the synthesis of enantiopure beta-amino acids. AMB Express 2:11
56. Savile CK, Janey JM, Mundorff EC, Moore JC, Tam S, Jarvis WR, Colbeck JC, Krebber A, Fleitz FJ, Brands J, Devine PN, Huisman GW, Hughes GJ (2010) Biocatalytic asymmetric synthesis of chiral amines from ketones applied to sitagliptin manufacture. Science 329:305–309
57. Schoenlechner R, Szatmari M, Bagdi A, Tomoskozi S (2013) Optimisation of bread quality produced from wheat and proso millet (Panicum miliaceum L.) by adding emulsifiers, transglutaminase and xylanase. Lwt-Food Sci Technol 51:361–366
58. Seo JH, Kyung D, Joo K, Lee J, Kim BG (2011) Necessary and sufficient conditions for the asymmetric synthesis of chiral amines using omega-aminotransferases. Biotechnol Bioeng 108:253–263
59. Simon RC, Mutti FG, Kroutil W (2013) Biocatalytic synthesis of enantiopure building blocks for pharmaceuticals. Drug Discov Today Technol 10:e37–e44
60. Smerdel B, Pollak L, Novotni D, Cukelj N, Benkovic M, Lusic D, Curic D (2012) Improvement of gluten-free bread quality using transglutaminase, various extruded flours and protein isolates. J Food Nut Res 51:242–253
61. Stangierski J, Rezler R, Lesnierowski G (2014) Analysis of the effect of heating on rheological attributes of washed mechanically recovered chicken meat modified with transglutaminase. J Food Eng 141:13–19
62. Svedendahl M, Branneby C, Lindberg L, Berglund P (2010) Reversed enantiopreference of an omega-transaminase by a single-point mutation. Chemcatchem 2:976–980
63. Truppo MD, Rozzell JD, Turner NJ (2010) Efficient production of enantiomerically pure chiral amines at concentrations of 50 g/L using transaminases. Org Process Res Dev 14:234–237
64. Truppo MD, Strotman H, Hughes G (2012) Development of an immobilized transaminase capable of operating in organic solvent. ChemCatChem 4:1071–1074
65. Tufvesson P, Lima-Ramos J, Jensen JS, Al-Haque N, Neto W, Woodley JM (2011) Process considerations for the asymmetric synthesis of chiral amines using transaminases. Biotechnol Bioeng 108:1479–1493
66. Woodley JM (2013) Protein engineering of enzymes for process applications. Curr Opin Chem Biol 17:310–316
67. Xie Y, An J, Yang G, Wu G, Zhan Y, Cui L, Feng Y (2014) Enhanced enzyme kinetic stability by increasing rigidity within the active site. J Biol Chem 289:7994–8006
68. Yan J, Zheng X, Du L, Li S (2014) Integrated lipase production and in situ biodiesel synthesis in a recombinant Pichia pastoris yeast: an efficient dual biocatalytic system composed of cell free enzymes and whole cell catalysts. Biotechnol Biofuels 7:55
69. Yew SE, Lim TJ, Lew LC, Bhat R, Mat-Easa A, Liong MT (2011) Development of a probiotic delivery system from agrowastes, soy protein isolate, and microbial transglutaminase. J Food Sci 76:H108–H115
70. Yokoyama K, Utsumi H, Nakamura T, Ogaya D, Shimba N, Suzuki E, Taguchi S (2010) Screening for improved activity of a transglutaminase from Streptomyces mobaraensis created by a novel rational mutagenesis and random mutagenesis. Appl Microbiol Biotechnol 87:2087–2096
71. Yu XW, Tan NJ, Xiao R, Xu Y (2012a) Engineering a disulfide bond in the lid hinge region of Rhizopus chinensis lipase: increased thermostability and altered acyl chain length specificity. Plos one 7:e46388
72. Yu XW, Wang R, Zhang M, Xu Y, Xiao R (2012b) Enhanced thermostability of a Rhizopus chinensis lipase by in vivo recombination in Pichia pastoris. Microb Cell Fact 11:1–11
73. Zhang D, Zhu Y, Chen J (2009) Microbial transglutaminase production: understanding the mechanism. Biotechnol Gen Eng Rev 26:205–222