-
1
-
-
28244432478
-
Mrr instigates the SOS response after high pressure stress in Escherichia coli
-
Aertsen A & Michiels CW (2005) Mrr instigates the SOS response after high pressure stress in Escherichia coli. Mol Microbiol 58: 1381-1391.
-
(2005)
Mol Microbiol
, vol.58
, pp. 1381-1391
-
-
Aertsen, A.1
Michiels, C.W.2
-
3
-
-
33751370456
-
Hypermutagenesis in mutA cells is mediated by mistranslational corruption of polymerase, and is accompanied by replication fork collapse
-
Al Mamun AA, Gautam S & Humayun MZ (2006) Hypermutagenesis in mutA cells is mediated by mistranslational corruption of polymerase, and is accompanied by replication fork collapse. Mol Microbiol 62: 1752-1763.
-
(2006)
Mol Microbiol
, vol.62
, pp. 1752-1763
-
-
Al Mamun, A.A.1
Gautam, S.2
Humayun, M.Z.3
-
4
-
-
80054882845
-
Impact of hydroxyl- and superoxide anion-based oxidative stress on logarithmic and stationary phase Escherichia coli O157:H7 stress and virulence gene expression
-
Allen KJ & Griffiths MW (2012) Impact of hydroxyl- and superoxide anion-based oxidative stress on logarithmic and stationary phase Escherichia coli O157:H7 stress and virulence gene expression. Food Microbiol 29: 141-147.
-
(2012)
Food Microbiol
, vol.29
, pp. 141-147
-
-
Allen, K.J.1
Griffiths, M.W.2
-
5
-
-
84890190873
-
Identification of a DNA-damage-inducible regulon in Acinetobacter baumannii
-
Aranda J, Poza M, Shingu-Vazquez M, Cortes P, Boyce JD, Adler B, Barbe J & Bou G (2013) Identification of a DNA-damage-inducible regulon in Acinetobacter baumannii. J Bacteriol 195: 5577-5582.
-
(2013)
J Bacteriol
, vol.195
, pp. 5577-5582
-
-
Aranda, J.1
Poza, M.2
Shingu-Vazquez, M.3
Cortes, P.4
Boyce, J.D.5
Adler, B.6
Barbe, J.7
Bou, G.8
-
6
-
-
84883019152
-
Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems
-
Aravind L, Anand S & Iyer LM (2013) Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems. Biol Direct 8: 20.
-
(2013)
Biol Direct
, vol.8
, pp. 20
-
-
Aravind, L.1
Anand, S.2
Iyer, L.M.3
-
7
-
-
27744568353
-
Genetic composition of the Bacillus subtilis SOS system
-
Au N, Kuester-Schoeck E, Mandava V et al. (2005) Genetic composition of the Bacillus subtilis SOS system. J Bacteriol 187: 7655-7666.
-
(2005)
J Bacteriol
, vol.187
, pp. 7655-7666
-
-
Au, N.1
Kuester-Schoeck, E.2
Mandava, V.3
-
8
-
-
0026532018
-
PsiB, and anti-SOS protein, is transiently expressed by the F sex factor during its transmission to an Escherichia coli K-12 recipient
-
Bagdasarian M, Bailone A, Angulo JF, Scholz P, Bagdasarian M & Devoret R (1992) PsiB, and anti-SOS protein, is transiently expressed by the F sex factor during its transmission to an Escherichia coli K-12 recipient. Mol Microbiol 6: 885-893.
-
(1992)
Mol Microbiol
, vol.6
, pp. 885-893
-
-
Bagdasarian, M.1
Bailone, A.2
Angulo, J.F.3
Scholz, P.4
Bagdasarian, M.5
Devoret, R.6
-
9
-
-
79955527229
-
Vibrio cholerae triggers SOS and mutagenesis in response to a wide range of antibiotics: a route towards multiresistance
-
Baharoglu Z & Mazel D (2011) Vibrio cholerae triggers SOS and mutagenesis in response to a wide range of antibiotics: a route towards multiresistance. Antimicrob Agents Chemother 55: 2438-2441.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 2438-2441
-
-
Baharoglu, Z.1
Mazel, D.2
-
10
-
-
78149442895
-
Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation
-
Baharoglu Z, Bikard D & Mazel D (2010a) Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation. PLoS Genet 6: e1001165.
-
(2010)
PLoS Genet
, vol.6
, pp. e1001165
-
-
Baharoglu, Z.1
Bikard, D.2
Mazel, D.3
-
11
-
-
77954371207
-
RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases
-
Baharoglu Z, Lestini R, Duigou S & Michel B (2010b) RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases. Mol Microbiol 77: 324-336.
-
(2010)
Mol Microbiol
, vol.77
, pp. 324-336
-
-
Baharoglu, Z.1
Lestini, R.2
Duigou, S.3
Michel, B.4
-
12
-
-
84860321684
-
Transformation-induced SOS regulation and carbon catabolite control of the V. cholerae integron integrase: connecting environment and genome plasticity
-
Baharoglu Z, Krin E & Mazel D (2012) Transformation-induced SOS regulation and carbon catabolite control of the V. cholerae integron integrase: connecting environment and genome plasticity. J Bacteriol 194: 1659-1667.
-
(2012)
J Bacteriol
, vol.194
, pp. 1659-1667
-
-
Baharoglu, Z.1
Krin, E.2
Mazel, D.3
-
13
-
-
84876837863
-
RpoS plays a central role in the SOS induction by sub-lethal aminoglycoside concentrations in Vibrio cholerae
-
Baharoglu Z, Krin E & Mazel D (2013) RpoS plays a central role in the SOS induction by sub-lethal aminoglycoside concentrations in Vibrio cholerae. PLoS Genet 9: e1003421.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003421
-
-
Baharoglu, Z.1
Krin, E.2
Mazel, D.3
-
14
-
-
84895814011
-
Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: a role for transcription stalling and Mfd helicase
-
Baharoglu Z, Babosan A & Mazel D (2014) Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: a role for transcription stalling and Mfd helicase. Nucleic Acids Res 42: 2366-2379.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 2366-2379
-
-
Baharoglu, Z.1
Babosan, A.2
Mazel, D.3
-
15
-
-
0036300741
-
Mistranslation induced by streptomycin provokes a RecABC/RuvABC-dependent mutator phenotype in Escherichia coli cells
-
Balashov S & Humayun MZ (2002) Mistranslation induced by streptomycin provokes a RecABC/RuvABC-dependent mutator phenotype in Escherichia coli cells. J Mol Biol 315: 513-527.
-
(2002)
J Mol Biol
, vol.315
, pp. 513-527
-
-
Balashov, S.1
Humayun, M.Z.2
-
16
-
-
0345827436
-
SOS response promotes horizontal dissemination of antibiotic resistance genes
-
Beaber JW, Hochhut B & Waldor MK (2004) SOS response promotes horizontal dissemination of antibiotic resistance genes. Nature 427: 72-74.
-
(2004)
Nature
, vol.427
, pp. 72-74
-
-
Beaber, J.W.1
Hochhut, B.2
Waldor, M.K.3
-
17
-
-
84877877199
-
The role of the bacterial mismatch repair system in SOS-induced mutagenesis: a theoretical background
-
Belov OV, Chuluunbaatar O, Kapralov MI & Sweilam NH (2013) The role of the bacterial mismatch repair system in SOS-induced mutagenesis: a theoretical background. J Theor Biol 332: 30-41.
-
(2013)
J Theor Biol
, vol.332
, pp. 30-41
-
-
Belov, O.V.1
Chuluunbaatar, O.2
Kapralov, M.I.3
Sweilam, N.H.4
-
18
-
-
0026728290
-
Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes
-
Bernard P & Couturier M (1992) Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. J Mol Biol 226: 735-745.
-
(1992)
J Mol Biol
, vol.226
, pp. 735-745
-
-
Bernard, P.1
Couturier, M.2
-
19
-
-
50449084975
-
Endogenous oxidative stress produces diversity and adaptability in biofilm communities
-
Boles BR & Singh PK (2008) Endogenous oxidative stress produces diversity and adaptability in biofilm communities. P Natl Acad Sci USA 105: 12503-12508.
-
(2008)
P Natl Acad Sci USA
, vol.105
, pp. 12503-12508
-
-
Boles, B.R.1
Singh, P.K.2
-
20
-
-
75649142564
-
The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo
-
Boubakri H, de Septenville AL, Viguera E & Michel B (2010) The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo. EMBO J 29: 145-157.
-
(2010)
EMBO J
, vol.29
, pp. 145-157
-
-
Boubakri, H.1
de Septenville, A.L.2
Viguera, E.3
Michel, B.4
-
21
-
-
84873528806
-
SOS response activation and competence development are antagonistic mechanisms in Streptococcus thermophilus
-
Boutry C, Delplace B, Clippe A, Fontaine L & Hols P (2013) SOS response activation and competence development are antagonistic mechanisms in Streptococcus thermophilus. J Bacteriol 195: 696-707.
-
(2013)
J Bacteriol
, vol.195
, pp. 696-707
-
-
Boutry, C.1
Delplace, B.2
Clippe, A.3
Fontaine, L.4
Hols, P.5
-
23
-
-
80055096030
-
Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response
-
Butala M, Klose D, Hodnik V, Rems A, Podlesek Z, Klare JP, Anderluh G, Busby SJ, Steinhoff HJ & Zgur-Bertok D (2011) Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response. Nucleic Acids Res 39: 6546-6557.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6546-6557
-
-
Butala, M.1
Klose, D.2
Hodnik, V.3
Rems, A.4
Podlesek, Z.5
Klare, J.P.6
Anderluh, G.7
Busby, S.J.8
Steinhoff, H.J.9
Zgur-Bertok, D.10
-
24
-
-
80053586991
-
Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons
-
Cambray G, Sanchez-Alberola N, Campoy S, Guerin E, Da Re S, Gonzalez-Zorn B, Ploy MC, Barbe J, Mazel D & Erill I (2011) Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons. Mob DNA 2: 6.
-
(2011)
Mob DNA
, vol.2
, pp. 6
-
-
Cambray, G.1
Sanchez-Alberola, N.2
Campoy, S.3
Guerin, E.4
Da Re, S.5
Gonzalez-Zorn, B.6
Ploy, M.C.7
Barbe, J.8
Mazel, D.9
Erill, I.10
-
25
-
-
62649115591
-
UvrD303, a hyper-helicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C-terminus
-
Centore RC, Leeson MC & Sandler SJ (2008) UvrD303, a hyper-helicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C-terminus. J Bacteriol 191: 1429-1438.
-
(2008)
J Bacteriol
, vol.191
, pp. 1429-1438
-
-
Centore, R.C.1
Leeson, M.C.2
Sandler, S.J.3
-
26
-
-
84868153016
-
Induction of competence for genetic transformation by antibiotics: convergent evolution of stress responses in distant bacterial species lacking SOS?
-
Charpentier X, Polard P & Claverys JP (2012) Induction of competence for genetic transformation by antibiotics: convergent evolution of stress responses in distant bacterial species lacking SOS? Curr Opin Microbiol 15: 570-576.
-
(2012)
Curr Opin Microbiol
, vol.15
, pp. 570-576
-
-
Charpentier, X.1
Polard, P.2
Claverys, J.P.3
-
27
-
-
29944445616
-
Induction and inhibition of ciprofloxacin resistance-conferring mutations in hypermutator bacteria
-
Cirz RT & Romesberg FE (2006) Induction and inhibition of ciprofloxacin resistance-conferring mutations in hypermutator bacteria. Antimicrob Agents Chemother 50: 220-225.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 220-225
-
-
Cirz, R.T.1
Romesberg, F.E.2
-
28
-
-
33749585217
-
Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin
-
Cirz RT, O'Neill BM, Hammond JA, Head SR & Romesberg FE (2006) Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. J Bacteriol 188: 7101-7110.
-
(2006)
J Bacteriol
, vol.188
, pp. 7101-7110
-
-
Cirz, R.T.1
O'Neill, B.M.2
Hammond, J.A.3
Head, S.R.4
Romesberg, F.E.5
-
29
-
-
64349108725
-
The genetic transformation machinery: composition, localization, and mechanism
-
Claverys JP, Martin B & Polard P (2009) The genetic transformation machinery: composition, localization, and mechanism. FEMS Microbiol Rev 33: 643-656.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 643-656
-
-
Claverys, J.P.1
Martin, B.2
Polard, P.3
-
30
-
-
73449087603
-
The transcription elongation factor NusA is required for stress-induced mutagenesis in Escherichia coli
-
Cohen SE & Walker GC (2010) The transcription elongation factor NusA is required for stress-induced mutagenesis in Escherichia coli. Curr Biol 20: 80-85.
-
(2010)
Curr Biol
, vol.20
, pp. 80-85
-
-
Cohen, S.E.1
Walker, G.C.2
-
31
-
-
0035023305
-
Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli
-
Courcelle J, Khodursky A, Peter B, Brown PO & Hanawalt PC (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics 158: 41-64.
-
(2001)
Genetics
, vol.158
, pp. 41-64
-
-
Courcelle, J.1
Khodursky, A.2
Peter, B.3
Brown, P.O.4
Hanawalt, P.C.5
-
32
-
-
0033954063
-
Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair
-
Czyz A, Wrobel B & Wegrzyn G (2000) Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair. Microbiology 146(Pt 2): 283-288.
-
(2000)
Microbiology
, vol.146
, pp. 283-288
-
-
Czyz, A.1
Wrobel, B.2
Wegrzyn, G.3
-
33
-
-
1542682579
-
Stimulation of DNA repair as an evolutionary drive for bacterial luminescence
-
Czyz A, Plata K & Wegrzyn G (2003) Stimulation of DNA repair as an evolutionary drive for bacterial luminescence. Luminescence 18: 140-144.
-
(2003)
Luminescence
, vol.18
, pp. 140-144
-
-
Czyz, A.1
Plata, K.2
Wegrzyn, G.3
-
34
-
-
68249107864
-
The SOS response promotes qnrB quinolone-resistance determinant expression
-
Da Re S, Garnier F, Guerin E, Campoy S, Denis F & Ploy MC (2009) The SOS response promotes qnrB quinolone-resistance determinant expression. EMBO Rep 10: 929-933.
-
(2009)
EMBO Rep
, vol.10
, pp. 929-933
-
-
Da Re, S.1
Garnier, F.2
Guerin, E.3
Campoy, S.4
Denis, F.5
Ploy, M.C.6
-
35
-
-
60749095652
-
A new perspective on radiation resistance based on Deinococcus radiodurans
-
Daly MJ (2009) A new perspective on radiation resistance based on Deinococcus radiodurans. Nat Rev Microbiol 7: 237-245.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 237-245
-
-
Daly, M.J.1
-
36
-
-
0036267340
-
Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis
-
Davis EO, Dullaghan EM & Rand L (2002) Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis. J Bacteriol 184: 3287-3295.
-
(2002)
J Bacteriol
, vol.184
, pp. 3287-3295
-
-
Davis, E.O.1
Dullaghan, E.M.2
Rand, L.3
-
37
-
-
84860578766
-
Replication fork reversal after replication-transcription collision
-
De Septenville AL, Duigou S, Boubakri H & Michel B (2012) Replication fork reversal after replication-transcription collision. PLoS Genet 8: e1002622.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002622
-
-
De Septenville, A.L.1
Duigou, S.2
Boubakri, H.3
Michel, B.4
-
38
-
-
32044436258
-
Structural basis for bacterial transcription-coupled DNA repair
-
Deaconescu AM, Chambers AL, Smith AJ, Nickels BE, Hochschild A, Savery NJ & Darst SA (2006) Structural basis for bacterial transcription-coupled DNA repair. Cell 124: 507-520.
-
(2006)
Cell
, vol.124
, pp. 507-520
-
-
Deaconescu, A.M.1
Chambers, A.L.2
Smith, A.J.3
Nickels, B.E.4
Hochschild, A.5
Savery, N.J.6
Darst, S.A.7
-
39
-
-
10044274026
-
Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems
-
Delmas S & Matic I (2005) Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems. DNA Repair (Amst) 4: 221-229.
-
(2005)
DNA Repair (Amst)
, vol.4
, pp. 221-229
-
-
Delmas, S.1
Matic, I.2
-
40
-
-
31544468664
-
Intermediate mutation frequencies favor evolution of multidrug resistance in Escherichia coli
-
Denamur E, Tenaillon O, Deschamps C, Skurnik D, Ronco E, Gaillard JL, Picard B, Branger C & Matic I (2005) Intermediate mutation frequencies favor evolution of multidrug resistance in Escherichia coli. Genetics 171: 825-827.
-
(2005)
Genetics
, vol.171
, pp. 825-827
-
-
Denamur, E.1
Tenaillon, O.2
Deschamps, C.3
Skurnik, D.4
Ronco, E.5
Gaillard, J.L.6
Picard, B.7
Branger, C.8
Matic, I.9
-
41
-
-
79955534081
-
Impact of ciprofloxacin exposure on Staphylococcus aureus genomic alterations linked with emergence of rifampin resistance
-
Didier JP, Villet R, Huggler E, Lew DP, Hooper DC, Kelley WL & Vaudaux P (2011) Impact of ciprofloxacin exposure on Staphylococcus aureus genomic alterations linked with emergence of rifampin resistance. Antimicrob Agents Chemother 55: 1946-1952.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 1946-1952
-
-
Didier, J.P.1
Villet, R.2
Huggler, E.3
Lew, D.P.4
Hooper, D.C.5
Kelley, W.L.6
Vaudaux, P.7
-
42
-
-
74249107300
-
SOS response induces persistence to fluoroquinolones in Escherichia coli
-
Dorr T, Lewis K & Vulic M (2009) SOS response induces persistence to fluoroquinolones in Escherichia coli. PLoS Genet 5: e1000760.
-
(2009)
PLoS Genet
, vol.5
, pp. e1000760
-
-
Dorr, T.1
Lewis, K.2
Vulic, M.3
-
43
-
-
77649174212
-
Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli
-
Dorr T, Vulic M & Lewis K (2010) Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli. PLoS Biol 8: e1000317.
-
(2010)
PLoS Biol
, vol.8
, pp. e1000317
-
-
Dorr, T.1
Vulic, M.2
Lewis, K.3
-
44
-
-
0032697140
-
DNA uptake in bacteria
-
Dubnau D (1999) DNA uptake in bacteria. Annu Rev Microbiol 53: 217-244.
-
(1999)
Annu Rev Microbiol
, vol.53
, pp. 217-244
-
-
Dubnau, D.1
-
45
-
-
0034705167
-
Protein oxidation in response to increased transcriptional or translational errors
-
Dukan S, Farewell A, Ballesteros M, Taddei F, Radman M & Nystrom T (2000) Protein oxidation in response to increased transcriptional or translational errors. P Natl Acad Sci USA 97: 5746-5749.
-
(2000)
P Natl Acad Sci USA
, vol.97
, pp. 5746-5749
-
-
Dukan, S.1
Farewell, A.2
Ballesteros, M.3
Taddei, F.4
Radman, M.5
Nystrom, T.6
-
46
-
-
80052008241
-
Linking RNA polymerase backtracking to genome instability in E. coli
-
Dutta D, Shatalin K, Epshtein V, Gottesman ME & Nudler E (2011) Linking RNA polymerase backtracking to genome instability in E. coli. Cell 146: 533-543.
-
(2011)
Cell
, vol.146
, pp. 533-543
-
-
Dutta, D.1
Shatalin, K.2
Epshtein, V.3
Gottesman, M.E.4
Nudler, E.5
-
47
-
-
33947247352
-
Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli
-
Dwyer DJ, Kohanski MA, Hayete B & Collins JJ (2007) Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli. Mol Syst Biol 3: 91.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 91
-
-
Dwyer, D.J.1
Kohanski, M.A.2
Hayete, B.3
Collins, J.J.4
-
48
-
-
70349816733
-
Role of reactive oxygen species in antibiotic action and resistance
-
Dwyer DJ, Kohanski MA & Collins JJ (2009) Role of reactive oxygen species in antibiotic action and resistance. Curr Opin Microbiol 12: 482-489.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 482-489
-
-
Dwyer, D.J.1
Kohanski, M.A.2
Collins, J.J.3
-
49
-
-
0344464768
-
In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon
-
Erill I, Escribano M, Campoy S & Barbe J (2003) In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. Bioinformatics 19: 2225-2236.
-
(2003)
Bioinformatics
, vol.19
, pp. 2225-2236
-
-
Erill, I.1
Escribano, M.2
Campoy, S.3
Barbe, J.4
-
50
-
-
35449007348
-
Aeons of distress: an evolutionary perspective on the bacterial SOS response
-
Erill I, Campoy S & Barbe J (2007) Aeons of distress: an evolutionary perspective on the bacterial SOS response. FEMS Microbiol Rev 31: 637-656.
-
(2007)
FEMS Microbiol Rev
, vol.31
, pp. 637-656
-
-
Erill, I.1
Campoy, S.2
Barbe, J.3
-
51
-
-
84879615674
-
Fe-S cluster biosynthesis controls uptake of aminoglycosides in a ROS-less death pathway
-
Ezraty B, Vergnes A, Banzhaf M et al. (2013) Fe-S cluster biosynthesis controls uptake of aminoglycosides in a ROS-less death pathway. Science 340: 1583-1587.
-
(2013)
Science
, vol.340
, pp. 1583-1587
-
-
Ezraty, B.1
Vergnes, A.2
Banzhaf, M.3
-
52
-
-
0025786078
-
Oxidative stress responses in Escherichia-coli and Salmonella-typhimurium
-
Farr SB & Kogoma T (1991) Oxidative stress responses in Escherichia-coli and Salmonella-typhimurium. Microbiol Rev 55: 561-585.
-
(1991)
Microbiol Rev
, vol.55
, pp. 561-585
-
-
Farr, S.B.1
Kogoma, T.2
-
54
-
-
0038401982
-
Identification of additional genes belonging to the LexA regulon in Escherichia coli
-
Fernandez De Henestrosa AR, Ogi T, Aoyagi S, Chafin D, Hayes JJ, Ohmori H & Woodgate R (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol Microbiol 35: 1560-1572.
-
(2000)
Mol Microbiol
, vol.35
, pp. 1560-1572
-
-
Fernandez De Henestrosa, A.R.1
Ogi, T.2
Aoyagi, S.3
Chafin, D.4
Hayes, J.J.5
Ohmori, H.6
Woodgate, R.7
-
55
-
-
0036837797
-
A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms
-
Fernandez de Henestrosa AR, Cune J, Erill I, Magnuson JK & Barbe J (2002) A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms. J Bacteriol 184: 6073-6080.
-
(2002)
J Bacteriol
, vol.184
, pp. 6073-6080
-
-
Fernandez de Henestrosa, A.R.1
Cune, J.2
Erill, I.3
Magnuson, J.K.4
Barbe, J.5
-
56
-
-
73449119958
-
Contamination of surface, ground, and drinking water from pharmaceutical production
-
Fick J, Soderstrom H, Lindberg RH, Phan C, Tysklind M & Larsson DG (2009) Contamination of surface, ground, and drinking water from pharmaceutical production. Environ Toxicol Chem 28: 2522-2527.
-
(2009)
Environ Toxicol Chem
, vol.28
, pp. 2522-2527
-
-
Fick, J.1
Soderstrom, H.2
Lindberg, R.H.3
Phan, C.4
Tysklind, M.5
Larsson, D.G.6
-
58
-
-
84884895663
-
Leptospira interrogans serovar copenhageni harbors two lexA genes involved in SOS response
-
Fonseca LS, da Silva JB, Milanez JS, Monteiro-Vitorello CB, Momo L, de Morais ZM, Vasconcellos SA, Marques MV, Ho PL & da Costa RM (2013) Leptospira interrogans serovar copenhageni harbors two lexA genes involved in SOS response. PLoS ONE 8: e76419.
-
(2013)
PLoS ONE
, vol.8
, pp. e76419
-
-
Fonseca, L.S.1
da Silva, J.B.2
Milanez, J.S.3
Monteiro-Vitorello, C.B.4
Momo, L.5
de Morais, Z.M.6
Vasconcellos, S.A.7
Marques, M.V.8
Ho, P.L.9
da Costa, R.M.10
-
59
-
-
84859958491
-
Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics
-
Foti JJ, Devadoss B, Winkler JA, Collins JJ & Walker GC (2012) Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics. Science 336: 315-319.
-
(2012)
Science
, vol.336
, pp. 315-319
-
-
Foti, J.J.1
Devadoss, B.2
Winkler, J.A.3
Collins, J.J.4
Walker, G.C.5
-
60
-
-
0037205001
-
Specialized DNA polymerases, cellular survival, and the genesis of mutations
-
Friedberg EC, Wagner R & Radman M (2002) Specialized DNA polymerases, cellular survival, and the genesis of mutations. Science 296: 1627-1630.
-
(2002)
Science
, vol.296
, pp. 1627-1630
-
-
Friedberg, E.C.1
Wagner, R.2
Radman, M.3
-
61
-
-
33845709987
-
RecFOR proteins are essential for Pol V-mediated translesion synthesis and mutagenesis
-
Fujii S, Isogawa A & Fuchs RP (2006) RecFOR proteins are essential for Pol V-mediated translesion synthesis and mutagenesis. EMBO J 25: 5754-5763.
-
(2006)
EMBO J
, vol.25
, pp. 5754-5763
-
-
Fujii, S.1
Isogawa, A.2
Fuchs, R.P.3
-
62
-
-
80053645721
-
R-loop-mediated genomic instability is caused by impairment of replication fork progression
-
Gan W, Guan Z, Liu J, Gui T, Shen K, Manley JL & Li X (2011) R-loop-mediated genomic instability is caused by impairment of replication fork progression. Genes Dev 25: 2041-2056.
-
(2011)
Genes Dev
, vol.25
, pp. 2041-2056
-
-
Gan, W.1
Guan, Z.2
Liu, J.3
Gui, T.4
Shen, K.5
Manley, J.L.6
Li, X.7
-
63
-
-
0035954733
-
Natural conjugative plasmids induce bacterial biofilm development
-
Ghigo JM (2001) Natural conjugative plasmids induce bacterial biofilm development. Nature 412: 442-445.
-
(2001)
Nature
, vol.412
, pp. 442-445
-
-
Ghigo, J.M.1
-
64
-
-
77954354375
-
The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli
-
Gibson JL, Lombardo MJ, Thornton PC et al. (2010) The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli. Mol Microbiol 77: 415-430.
-
(2010)
Mol Microbiol
, vol.77
, pp. 415-430
-
-
Gibson, J.L.1
Lombardo, M.J.2
Thornton, P.C.3
-
65
-
-
79952202238
-
SOS involvement in stress-inducible biofilm formation
-
Gotoh H, Kasaraneni N, Devineni N, Dallo SF & Weitao T (2010) SOS involvement in stress-inducible biofilm formation. Biofouling 26: 603-611.
-
(2010)
Biofouling
, vol.26
, pp. 603-611
-
-
Gotoh, H.1
Kasaraneni, N.2
Devineni, N.3
Dallo, S.F.4
Weitao, T.5
-
66
-
-
66249143446
-
The SOS response controls integron recombination
-
Guerin E, Cambray G, Sanchez-Alberola N, Campoy S, Erill I, Da Re S, Gonzalez-Zorn B, Barbe J, Ploy MC & Mazel D (2009) The SOS response controls integron recombination. Science 324: 1034.
-
(2009)
Science
, vol.324
, pp. 1034
-
-
Guerin, E.1
Cambray, G.2
Sanchez-Alberola, N.3
Campoy, S.4
Erill, I.5
Da Re, S.6
Gonzalez-Zorn, B.7
Barbe, J.8
Ploy, M.C.9
Mazel, D.10
-
67
-
-
79960941561
-
Selection of resistant bacteria at very low antibiotic concentrations
-
Gullberg E, Cao S, Berg OG, Ilback C, Sandegren L, Hughes D & Andersson DI (2011) Selection of resistant bacteria at very low antibiotic concentrations. PLoS Pathog 7: e1002158.
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002158
-
-
Gullberg, E.1
Cao, S.2
Berg, O.G.3
Ilback, C.4
Sandegren, L.5
Hughes, D.6
Andersson, D.I.7
-
68
-
-
0141963052
-
Bacteria with increased mutation frequency and antibiotic resistance are enriched in the commensal flora of patients with high antibiotic usage
-
Gustafsson I, Sjolund M, Torell E, Johannesson M, Engstrand L, Cars O & Andersson DI (2003) Bacteria with increased mutation frequency and antibiotic resistance are enriched in the commensal flora of patients with high antibiotic usage. J Antimicrob Chemother 52: 645-650.
-
(2003)
J Antimicrob Chemother
, vol.52
, pp. 645-650
-
-
Gustafsson, I.1
Sjolund, M.2
Torell, E.3
Johannesson, M.4
Engstrand, L.5
Cars, O.6
Andersson, D.I.7
-
69
-
-
84875876463
-
beta-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity
-
Gutierrez A, Laureti L, Crussard S et al. (2013) beta-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity. Nat Commun 4: 1610.
-
(2013)
Nat Commun
, vol.4
, pp. 1610
-
-
Gutierrez, A.1
Laureti, L.2
Crussard, S.3
-
70
-
-
58449092908
-
Net changes in antibiotic concentrations downstream from an effluent discharge
-
Haggard BE & Bartsch LD (2009) Net changes in antibiotic concentrations downstream from an effluent discharge. J Environ Qual 38: 343-352.
-
(2009)
J Environ Qual
, vol.38
, pp. 343-352
-
-
Haggard, B.E.1
Bartsch, L.D.2
-
71
-
-
0141707658
-
Quorum sensing controls biofilm formation in Vibrio cholerae
-
Hammer BK & Bassler BL (2003) Quorum sensing controls biofilm formation in Vibrio cholerae. Mol Microbiol 50: 101-104.
-
(2003)
Mol Microbiol
, vol.50
, pp. 101-104
-
-
Hammer, B.K.1
Bassler, B.L.2
-
72
-
-
46449110879
-
Key role of Mfd in the development of fluoroquinolone resistance in Campylobacter jejuni
-
Han J, Sahin O, Barton YW & Zhang Q (2008) Key role of Mfd in the development of fluoroquinolone resistance in Campylobacter jejuni. PLoS Pathog 4: e1000083.
-
(2008)
PLoS Pathog
, vol.4
, pp. e1000083
-
-
Han, J.1
Sahin, O.2
Barton, Y.W.3
Zhang, Q.4
-
73
-
-
84880271453
-
Compensation of the metabolic costs of antibiotic resistance by physiological adaptation in Escherichia coli
-
Handel N, Schuurmans JM, Brul S & Ter Kuile BH (2013) Compensation of the metabolic costs of antibiotic resistance by physiological adaptation in Escherichia coli. Antimicrob Agents Chemother 57: 3752-3762.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 3752-3762
-
-
Handel, N.1
Schuurmans, J.M.2
Brul, S.3
Ter Kuile, B.H.4
-
74
-
-
84255198334
-
Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes
-
Helmrich A, Ballarino M & Tora L (2011) Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes. Mol Cell 44: 966-977.
-
(2011)
Mol Cell
, vol.44
, pp. 966-977
-
-
Helmrich, A.1
Ballarino, M.2
Tora, L.3
-
75
-
-
84876188716
-
Transcription-replication encounters, consequences and genomic instability
-
Helmrich A, Ballarino M, Nudler E & Tora L (2013) Transcription-replication encounters, consequences and genomic instability. Nat Struct Mol Biol 20: 412-418.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 412-418
-
-
Helmrich, A.1
Ballarino, M.2
Nudler, E.3
Tora, L.4
-
76
-
-
0030797051
-
Formation, prevention, and repair of DNA damage by iron/hydrogen peroxide
-
Henle ES & Linn S (1997) Formation, prevention, and repair of DNA damage by iron/hydrogen peroxide. J Biol Chem 272: 19095-19098.
-
(1997)
J Biol Chem
, vol.272
, pp. 19095-19098
-
-
Henle, E.S.1
Linn, S.2
-
77
-
-
0000726641
-
Sequence-specific DNA cleavage by Fe2+-mediated fenton reactions has possible biological implications
-
Henle ES, Han Z, Tang N, Rai P, Luo Y & Linn S (1999) Sequence-specific DNA cleavage by Fe2+-mediated fenton reactions has possible biological implications. J Biol Chem 274: 962-971.
-
(1999)
J Biol Chem
, vol.274
, pp. 962-971
-
-
Henle, E.S.1
Han, Z.2
Tang, N.3
Rai, P.4
Luo, Y.5
Linn, S.6
-
78
-
-
84894036376
-
Metronidazole increases the emergence of ciprofloxacin- and amikacin-resistant Pseudomonas aeruginosa by inducing the SOS response
-
Hocquet D & Bertrand X (2014) Metronidazole increases the emergence of ciprofloxacin- and amikacin-resistant Pseudomonas aeruginosa by inducing the SOS response. J Antimicrob Chemother 69: 852-854.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 852-854
-
-
Hocquet, D.1
Bertrand, X.2
-
79
-
-
84864075483
-
Evidence for induction of integron-based antibiotic resistance by the SOS response in a clinical setting
-
Hocquet D, Llanes C, Thouverez M, Kulasekara HD, Bertrand X, Plesiat P, Mazel D & Miller SI (2012) Evidence for induction of integron-based antibiotic resistance by the SOS response in a clinical setting. PLoS Pathog 8: e1002778.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002778
-
-
Hocquet, D.1
Llanes, C.2
Thouverez, M.3
Kulasekara, H.D.4
Bertrand, X.5
Plesiat, P.6
Mazel, D.7
Miller, S.I.8
-
80
-
-
24144466550
-
Aminoglycoside antibiotics induce bacterial biofilm formation
-
Hoffman LR, D'Argenio DA, MacCoss MJ, Zhang Z, Jones RA & Miller SI (2005) Aminoglycoside antibiotics induce bacterial biofilm formation. Nature 436: 1171-1175.
-
(2005)
Nature
, vol.436
, pp. 1171-1175
-
-
Hoffman, L.R.1
D'Argenio, D.A.2
MacCoss, M.J.3
Zhang, Z.4
Jones, R.A.5
Miller, S.I.6
-
81
-
-
84868147186
-
Selection of resistance at lethal and non-lethal antibiotic concentrations
-
Hughes D & Andersson DI (2012) Selection of resistance at lethal and non-lethal antibiotic concentrations. Curr Opin Microbiol 15: 555-560.
-
(2012)
Curr Opin Microbiol
, vol.15
, pp. 555-560
-
-
Hughes, D.1
Andersson, D.I.2
-
82
-
-
0021967525
-
Repair of cis-platinum-DNA adducts by ABC excinuclease in vivo and in vitro
-
Husain I, Chaney SG & Sancar A (1985) Repair of cis-platinum-DNA adducts by ABC excinuclease in vivo and in vitro. J Bacteriol 163: 817-823.
-
(1985)
J Bacteriol
, vol.163
, pp. 817-823
-
-
Husain, I.1
Chaney, S.G.2
Sancar, A.3
-
83
-
-
0022432549
-
Thymine glycols and urea residues in M13 DNA constitute replicative blocks in vitro
-
Ide H, Kow YW & Wallace SS (1985) Thymine glycols and urea residues in M13 DNA constitute replicative blocks in vitro. Nucleic Acids Res 13: 8035-8052.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 8035-8052
-
-
Ide, H.1
Kow, Y.W.2
Wallace, S.S.3
-
84
-
-
0242608621
-
Pathways of oxidative damage
-
Imlay JA (2003) Pathways of oxidative damage. Annu Rev Microbiol 57: 395-418.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 395-418
-
-
Imlay, J.A.1
-
86
-
-
84864326787
-
DNA damage by reactive species: mechanisms, mutation and repair
-
Jena NR (2012) DNA damage by reactive species: mechanisms, mutation and repair. J Biosci 37: 503-517.
-
(2012)
J Biosci
, vol.37
, pp. 503-517
-
-
Jena, N.R.1
-
87
-
-
33645083733
-
Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1
-
Jolivet E, Lecointe F, Coste G, Satoh K, Narumi I, Bailone A & Sommer S (2006) Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1. Mol Microbiol 59: 338-349.
-
(2006)
Mol Microbiol
, vol.59
, pp. 338-349
-
-
Jolivet, E.1
Lecointe, F.2
Coste, G.3
Satoh, K.4
Narumi, I.5
Bailone, A.6
Sommer, S.7
-
88
-
-
76749094135
-
Inverse correlation between promoter strength and excision activity in class 1 integrons
-
Jove T, Da Re S, Denis F, Mazel D & Ploy MC (2010) Inverse correlation between promoter strength and excision activity in class 1 integrons. PLoS Genet 6: e1000793.
-
(2010)
PLoS Genet
, vol.6
, pp. e1000793
-
-
Jove, T.1
Da Re, S.2
Denis, F.3
Mazel, D.4
Ploy, M.C.5
-
89
-
-
81355136181
-
Antibiotic-induced biofilm formation
-
Kaplan JB (2011) Antibiotic-induced biofilm formation. Int J Artif Organs 34: 737-751.
-
(2011)
Int J Artif Organs
, vol.34
, pp. 737-751
-
-
Kaplan, J.B.1
-
90
-
-
79957826659
-
Extracellular DNA-dependent biofilm formation by Staphylococcus epidermidis RP62A in response to subminimal inhibitory concentrations of antibiotics
-
Kaplan JB, Jabbouri S & Sadovskaya I (2011) Extracellular DNA-dependent biofilm formation by Staphylococcus epidermidis RP62A in response to subminimal inhibitory concentrations of antibiotics. Res Microbiol 162: 535-541.
-
(2011)
Res Microbiol
, vol.162
, pp. 535-541
-
-
Kaplan, J.B.1
Jabbouri, S.2
Sadovskaya, I.3
-
91
-
-
0020992451
-
Ham22, a mini-F mutation which is lethal to host cell and promotes recA-dependent induction of lambdoid prophage
-
Karoui H, Bex F, Dreze P & Couturier M (1983) Ham22, a mini-F mutation which is lethal to host cell and promotes recA-dependent induction of lambdoid prophage. EMBO J 2: 1863-1868.
-
(1983)
EMBO J
, vol.2
, pp. 1863-1868
-
-
Karoui, H.1
Bex, F.2
Dreze, P.3
Couturier, M.4
-
92
-
-
84881098200
-
Exposure of clinical MRSA heterogeneous strains to beta-lactams redirects metabolism to optimize energy production through the TCA cycle
-
Keaton MA, Rosato RR, Plata KB, Singh CR & Rosato AE (2013) Exposure of clinical MRSA heterogeneous strains to beta-lactams redirects metabolism to optimize energy production through the TCA cycle. PLoS ONE 8: e71025.
-
(2013)
PLoS ONE
, vol.8
, pp. e71025
-
-
Keaton, M.A.1
Rosato, R.R.2
Plata, K.B.3
Singh, C.R.4
Rosato, A.E.5
-
93
-
-
33750689137
-
Lex marks the spot: the virulent side of SOS and a closer look at the LexA regulon
-
Kelley WL (2006) Lex marks the spot: the virulent side of SOS and a closer look at the LexA regulon. Mol Microbiol 62: 1228-1238.
-
(2006)
Mol Microbiol
, vol.62
, pp. 1228-1238
-
-
Kelley, W.L.1
-
94
-
-
84874720377
-
Killing by bactericidal antibiotics does not depend on reactive oxygen species
-
Keren I, Wu Y, Inocencio J, Mulcahy LR & Lewis K (2013) Killing by bactericidal antibiotics does not depend on reactive oxygen species. Science 339: 1213-1216.
-
(2013)
Science
, vol.339
, pp. 1213-1216
-
-
Keren, I.1
Wu, Y.2
Inocencio, J.3
Mulcahy, L.R.4
Lewis, K.5
-
95
-
-
84885578390
-
RecA recruits SMC-like RecN to DNA double-strand breaks
-
Keyamura K, Sakaguchi C, Kubota Y, Niki H & Hishida T (2013) RecA recruits SMC-like RecN to DNA double-strand breaks. J Biol Chem 288: 29229-29237.
-
(2013)
J Biol Chem
, vol.288
, pp. 29229-29237
-
-
Keyamura, K.1
Sakaguchi, C.2
Kubota, Y.3
Niki, H.4
Hishida, T.5
-
96
-
-
0030465238
-
Superoxide accelerates DNA damage by elevating free-iron levels
-
Keyer K & Imlay JA (1996) Superoxide accelerates DNA damage by elevating free-iron levels. P Natl Acad Sci USA 93: 13635-13640.
-
(1996)
P Natl Acad Sci USA
, vol.93
, pp. 13635-13640
-
-
Keyer, K.1
Imlay, J.A.2
-
97
-
-
77950911595
-
Conservation of the LexA repressor binding site in Deinococcus radiodurans
-
Khan F, Singh SP & Mishra BN (2008) Conservation of the LexA repressor binding site in Deinococcus radiodurans. J Integr Bioinform 5.
-
(2008)
J Integr Bioinform
, vol.5
-
-
Khan, F.1
Singh, S.P.2
Mishra, B.N.3
-
98
-
-
0034789619
-
Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli
-
Kim SR, Matsui K, Yamada M, Gruz P & Nohmi T (2001) Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli. Mol Genet Genomics 266: 207-215.
-
(2001)
Mol Genet Genomics
, vol.266
, pp. 207-215
-
-
Kim, S.R.1
Matsui, K.2
Yamada, M.3
Gruz, P.4
Nohmi, T.5
-
99
-
-
70350452577
-
Vibrio cholerae LexA coordinates CTX prophage gene expression
-
Kimsey HH & Waldor MK (2009) Vibrio cholerae LexA coordinates CTX prophage gene expression. J Bacteriol 191: 6788-6795.
-
(2009)
J Bacteriol
, vol.191
, pp. 6788-6795
-
-
Kimsey, H.H.1
Waldor, M.K.2
-
100
-
-
84858693961
-
Mechanisms of action of escapin, a bactericidal agent in the ink secretion of the sea hare Aplysia californica: rapid and long-lasting DNA condensation and involvement of the OxyR-regulated oxidative stress pathway
-
Ko KC, Tai PC & Derby CD (2012) Mechanisms of action of escapin, a bactericidal agent in the ink secretion of the sea hare Aplysia californica: rapid and long-lasting DNA condensation and involvement of the OxyR-regulated oxidative stress pathway. Antimicrob Agents Chemother 56: 1725-1734.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 1725-1734
-
-
Ko, K.C.1
Tai, P.C.2
Derby, C.D.3
-
101
-
-
34548213103
-
A common mechanism of cellular death induced by bactericidal antibiotics
-
Kohanski MA, Dwyer DJ, Hayete B, Lawrence CA & Collins JJ (2007) A common mechanism of cellular death induced by bactericidal antibiotics. Cell 130: 797-810.
-
(2007)
Cell
, vol.130
, pp. 797-810
-
-
Kohanski, M.A.1
Dwyer, D.J.2
Hayete, B.3
Lawrence, C.A.4
Collins, J.J.5
-
102
-
-
75949092532
-
Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis
-
Kohanski MA, DePristo MA & Collins JJ (2010a) Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis. Mol Cell 37: 311-320.
-
(2010)
Mol Cell
, vol.37
, pp. 311-320
-
-
Kohanski, M.A.1
DePristo, M.A.2
Collins, J.J.3
-
104
-
-
84887409134
-
Trashing of single-stranded DNA generated during processing of arrested replication fork in E. coli
-
Kohiyama M, Contremoulins V & Baudin X (2013) Trashing of single-stranded DNA generated during processing of arrested replication fork in E. coli. J Mol Biol 425: 4837-4844.
-
(2013)
J Mol Biol
, vol.425
, pp. 4837-4844
-
-
Kohiyama, M.1
Contremoulins, V.2
Baudin, X.3
-
105
-
-
84890095064
-
Structural insight into LexA-RecA* interaction
-
Kovacic L, Paulic N, Leonardi A, Hodnik V, Anderluh G, Podlesek Z, Zgur-Bertok D, Krizaj I & Butala M (2013) Structural insight into LexA-RecA* interaction. Nucleic Acids Res 41: 9901-9910.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 9901-9910
-
-
Kovacic, L.1
Paulic, N.2
Leonardi, A.3
Hodnik, V.4
Anderluh, G.5
Podlesek, Z.6
Zgur-Bertok, D.7
Krizaj, I.8
Butala, M.9
-
106
-
-
77956269639
-
Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans
-
Krisko A & Radman M (2010) Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans. P Natl Acad Sci USA 107: 14373-14377.
-
(2010)
P Natl Acad Sci USA
, vol.107
, pp. 14373-14377
-
-
Krisko, A.1
Radman, M.2
-
107
-
-
63449089595
-
Antibiotics in the aquatic environment-a review-part II
-
Kummerer K (2009a) Antibiotics in the aquatic environment-a review-part II. Chemosphere 75: 435-441.
-
(2009)
Chemosphere
, vol.75
, pp. 435-441
-
-
Kummerer, K.1
-
108
-
-
63449084512
-
Antibiotics in the aquatic environment-a review-part I
-
Kummerer K (2009b) Antibiotics in the aquatic environment-a review-part I. Chemosphere 75: 417-434.
-
(2009)
Chemosphere
, vol.75
, pp. 417-434
-
-
Kummerer, K.1
-
109
-
-
0022423227
-
Stimulation of the UvrABC enzyme-catalyzed repair reactions by the UvrD protein (DNA helicase II)
-
Kumura K, Sekiguchi M, Steinum AL & Seeberg E (1985) Stimulation of the UvrABC enzyme-catalyzed repair reactions by the UvrD protein (DNA helicase II). Nucleic Acids Res 13: 1483-1492.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 1483-1492
-
-
Kumura, K.1
Sekiguchi, M.2
Steinum, A.L.3
Seeberg, E.4
-
110
-
-
0142062024
-
Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli
-
Layton JC & Foster PL (2003) Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli. Mol Microbiol 50: 549-561.
-
(2003)
Mol Microbiol
, vol.50
, pp. 549-561
-
-
Layton, J.C.1
Foster, P.L.2
-
111
-
-
71549156255
-
The Helicobacter pylori Mfd protein is important for antibiotic resistance and DNA repair
-
Lee GH, Jeong JY, Chung JW, Nam WH, Lee SM, Pak JH, Choi KD, Song HJ, Jung HY & Kim JH (2009) The Helicobacter pylori Mfd protein is important for antibiotic resistance and DNA repair. Diagn Microbiol Infect Dis 65: 454-456.
-
(2009)
Diagn Microbiol Infect Dis
, vol.65
, pp. 454-456
-
-
Lee, G.H.1
Jeong, J.Y.2
Chung, J.W.3
Nam, W.H.4
Lee, S.M.5
Pak, J.H.6
Choi, K.D.7
Song, H.J.8
Jung, H.Y.9
Kim, J.H.10
-
112
-
-
80052196405
-
Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families
-
Leplae R, Geeraerts D, Hallez R, Guglielmini J, Dreze P & Van Melderen L (2011) Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families. Nucleic Acids Res 39: 5513-5525.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5513-5525
-
-
Leplae, R.1
Geeraerts, D.2
Hallez, R.3
Guglielmini, J.4
Dreze, P.5
Van Melderen, L.6
-
113
-
-
34548061530
-
UvrD controls the access of recombination proteins to blocked replication forks
-
Lestini R & Michel B (2007) UvrD controls the access of recombination proteins to blocked replication forks. EMBO J 26: 3804-3814.
-
(2007)
EMBO J
, vol.26
, pp. 3804-3814
-
-
Lestini, R.1
Michel, B.2
-
114
-
-
0028353720
-
Diversity and relative strength of tandem promoters for the antibiotic-resistance genes of several integrons
-
Levesque C, Brassard S, Lapointe J & Roy PH (1994) Diversity and relative strength of tandem promoters for the antibiotic-resistance genes of several integrons. Gene 142: 49-54.
-
(1994)
Gene
, vol.142
, pp. 49-54
-
-
Levesque, C.1
Brassard, S.2
Lapointe, J.3
Roy, P.H.4
-
115
-
-
0025853620
-
The role of the SOS response in bacteria exposed to zidovudine or trimethoprim
-
Lewin CS & Amyes SG (1991) The role of the SOS response in bacteria exposed to zidovudine or trimethoprim. J Med Microbiol 34: 329-332.
-
(1991)
J Med Microbiol
, vol.34
, pp. 329-332
-
-
Lewin, C.S.1
Amyes, S.G.2
-
116
-
-
77955628762
-
Persister cells
-
Lewis K (2010) Persister cells. Annu Rev Microbiol 64: 357-372.
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 357-372
-
-
Lewis, K.1
-
117
-
-
84874695302
-
Cell death from antibiotics without the involvement of reactive oxygen species
-
Liu Y & Imlay JA (2013) Cell death from antibiotics without the involvement of reactive oxygen species. Science 339: 1210-1213.
-
(2013)
Science
, vol.339
, pp. 1210-1213
-
-
Liu, Y.1
Imlay, J.A.2
-
118
-
-
0033153176
-
Detection of antimicrobial activity in urine for epidemiologic studies of antibiotic use
-
Liu YC, Huang WK, Huang TS & Kunin CM (1999a) Detection of antimicrobial activity in urine for epidemiologic studies of antibiotic use. J Clin Epidemiol 52: 539-545.
-
(1999)
J Clin Epidemiol
, vol.52
, pp. 539-545
-
-
Liu, Y.C.1
Huang, W.K.2
Huang, T.S.3
Kunin, C.M.4
-
119
-
-
0344563419
-
Extent of antibiotic use in Taiwan shown by antimicrobial activity in urine
-
Liu YC, Huang WK, Huang TS & Kunin CM (1999b) Extent of antibiotic use in Taiwan shown by antimicrobial activity in urine. Lancet 354: 1360.
-
(1999)
Lancet
, vol.354
, pp. 1360
-
-
Liu, Y.C.1
Huang, W.K.2
Huang, T.S.3
Kunin, C.M.4
-
120
-
-
67749095981
-
Effect of subinhibitory concentrations of antibiotics on intrachromosomal homologous recombination in Escherichia coli
-
Lopez E & Blazquez J (2009) Effect of subinhibitory concentrations of antibiotics on intrachromosomal homologous recombination in Escherichia coli. Antimicrob Agents Chemother 53: 3411-3415.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 3411-3415
-
-
Lopez, E.1
Blazquez, J.2
-
121
-
-
63849290890
-
Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy
-
Lu TK & Collins JJ (2009) Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy. P Natl Acad Sci USA 106: 4629-4634.
-
(2009)
P Natl Acad Sci USA
, vol.106
, pp. 4629-4634
-
-
Lu, T.K.1
Collins, J.J.2
-
122
-
-
0035750483
-
Repair of oxidative DNA damage: mechanisms and functions
-
Lu AL, Li X, Gu Y, Wright PM & Chang DY (2001) Repair of oxidative DNA damage: mechanisms and functions. Cell Biochem Biophys 35: 141-170.
-
(2001)
Cell Biochem Biophys
, vol.35
, pp. 141-170
-
-
Lu, A.L.1
Li, X.2
Gu, Y.3
Wright, P.M.4
Chang, D.Y.5
-
123
-
-
11244255422
-
The DinI and RecX proteins are competing modulators of RecA function
-
Lusetti SL, Drees JC, Stohl EA, Seifert HS & Cox MM (2004) The DinI and RecX proteins are competing modulators of RecA function. J Biol Chem 279: 55073-55079.
-
(2004)
J Biol Chem
, vol.279
, pp. 55073-55079
-
-
Lusetti, S.L.1
Drees, J.C.2
Stohl, E.A.3
Seifert, H.S.4
Cox, M.M.5
-
124
-
-
77649190844
-
Catabolite repression of SOS-dependent and SOS-independent spontaneous mutagenesis in stationary-phase Escherichia coli
-
Macphee DG & Ambrose M (2010) Catabolite repression of SOS-dependent and SOS-independent spontaneous mutagenesis in stationary-phase Escherichia coli. Mutat Res 686: 84-89.
-
(2010)
Mutat Res
, vol.686
, pp. 84-89
-
-
Macphee, D.G.1
Ambrose, M.2
-
125
-
-
33645220051
-
beta-lactam antibiotics induce the SOS response and horizontal transfer of virulence factors in Staphylococcus aureus
-
Maiques E, Ubeda C, Campoy S, Salvador N, Lasa I, Novick RP, Barbe J & Penades JR (2006) beta-lactam antibiotics induce the SOS response and horizontal transfer of virulence factors in Staphylococcus aureus. J Bacteriol 188: 2726-2729.
-
(2006)
J Bacteriol
, vol.188
, pp. 2726-2729
-
-
Maiques, E.1
Ubeda, C.2
Campoy, S.3
Salvador, N.4
Lasa, I.5
Novick, R.P.6
Barbe, J.7
Penades, J.R.8
-
126
-
-
84862022019
-
Ribonuclease E modulation of the bacterial SOS response
-
Manasherob R, Miller C, Kim KS & Cohen SN (2012) Ribonuclease E modulation of the bacterial SOS response. PLoS ONE 7: e38426.
-
(2012)
PLoS ONE
, vol.7
, pp. e38426
-
-
Manasherob, R.1
Miller, C.2
Kim, K.S.3
Cohen, S.N.4
-
127
-
-
0033522905
-
Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling
-
Masse E & Drolet M (1999) Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling. J Biol Chem 274: 16659-16664.
-
(1999)
J Biol Chem
, vol.274
, pp. 16659-16664
-
-
Masse, E.1
Drolet, M.2
-
128
-
-
84868322976
-
Factors limiting SOS expression in log-phase cells of Escherichia coli
-
Massoni SC, Leeson MC, Long JE, Gemme K, Mui A & Sandler SJ (2012) Factors limiting SOS expression in log-phase cells of Escherichia coli. J Bacteriol 194: 5325-5333.
-
(2012)
J Bacteriol
, vol.194
, pp. 5325-5333
-
-
Massoni, S.C.1
Leeson, M.C.2
Long, J.E.3
Gemme, K.4
Mui, A.5
Sandler, S.J.6
-
129
-
-
33747183094
-
Integrons: agents of bacterial evolution
-
Mazel D (2006) Integrons: agents of bacterial evolution. Nat Rev Microbiol 4: 608-620.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 608-620
-
-
Mazel, D.1
-
130
-
-
9144266449
-
Reconstruction of the evolutionary history of the LexA-binding sequence
-
Mazon G, Erill I, Campoy S, Cortes P, Forano E & Barbe J (2004a) Reconstruction of the evolutionary history of the LexA-binding sequence. Microbiology 150: 3783-3795.
-
(2004)
Microbiology
, vol.150
, pp. 3783-3795
-
-
Mazon, G.1
Erill, I.2
Campoy, S.3
Cortes, P.4
Forano, E.5
Barbe, J.6
-
131
-
-
1542344843
-
LexA-binding sequences in Gram-positive and cyanobacteria are closely related
-
Mazon G, Lucena JM, Campoy S, Fernandez de Henestrosa AR, Candau P & Barbe J (2004b) LexA-binding sequences in Gram-positive and cyanobacteria are closely related. Mol Genet Genomics 271: 40-49.
-
(2004)
Mol Genet Genomics
, vol.271
, pp. 40-49
-
-
Mazon, G.1
Lucena, J.M.2
Campoy, S.3
Fernandez de Henestrosa, A.R.4
Candau, P.5
Barbe, J.6
-
132
-
-
33645537547
-
Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene
-
Mazon G, Campoy S, Erill I & Barbe J (2006) Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene. Microbiology 152: 1109-1118.
-
(2006)
Microbiology
, vol.152
, pp. 1109-1118
-
-
Mazon, G.1
Campoy, S.2
Erill, I.3
Barbe, J.4
-
133
-
-
0026011652
-
Mutagenic spectrum resulting from DNA damage by oxygen radicals
-
Mcbride TJ, Preston BD & Loeb LA (1991) Mutagenic spectrum resulting from DNA damage by oxygen radicals. Biochemistry 30: 207-213.
-
(1991)
Biochemistry
, vol.30
, pp. 207-213
-
-
Mcbride, T.J.1
Preston, B.D.2
Loeb, L.A.3
-
134
-
-
84862763199
-
The conflict between DNA replication and transcription
-
McGlynn P, Savery NJ & Dillingham MS (2012) The conflict between DNA replication and transcription. Mol Microbiol 85: 12-20.
-
(2012)
Mol Microbiol
, vol.85
, pp. 12-20
-
-
McGlynn, P.1
Savery, N.J.2
Dillingham, M.S.3
-
135
-
-
0029941590
-
Phenotypic differentiation of "smart" versus "naive" bacteriophages of Bacillus subtilis
-
McVeigh RR & Yasbin RE (1996) Phenotypic differentiation of "smart" versus "naive" bacteriophages of Bacillus subtilis. J Bacteriol 178: 3399-3401.
-
(1996)
J Bacteriol
, vol.178
, pp. 3399-3401
-
-
McVeigh, R.R.1
Yasbin, R.E.2
-
136
-
-
72449139712
-
Growth phase and (p)ppGpp control of IraD, a regulator of RpoS stability, in Escherichia coli
-
Merrikh H, Ferrazzoli AE & Lovett ST (2009a) Growth phase and (p)ppGpp control of IraD, a regulator of RpoS stability, in Escherichia coli. J Bacteriol 191: 7436-7446.
-
(2009)
J Bacteriol
, vol.191
, pp. 7436-7446
-
-
Merrikh, H.1
Ferrazzoli, A.E.2
Lovett, S.T.3
-
137
-
-
58849087095
-
A DNA damage response in Escherichia coli involving the alternative sigma factor, RpoS
-
Merrikh H, Ferrazzoli AE, Bougdour A, Olivier-Mason A & Lovett ST (2009b) A DNA damage response in Escherichia coli involving the alternative sigma factor, RpoS. P Natl Acad Sci USA 106: 611-616.
-
(2009)
P Natl Acad Sci USA
, vol.106
, pp. 611-616
-
-
Merrikh, H.1
Ferrazzoli, A.E.2
Bougdour, A.3
Olivier-Mason, A.4
Lovett, S.T.5
-
139
-
-
70849094358
-
Phenotypic changes in ciprofloxacin-resistant Staphylococcus aureus
-
Mesak LR & Davies J (2009) Phenotypic changes in ciprofloxacin-resistant Staphylococcus aureus. Res Microbiol 160: 785-791.
-
(2009)
Res Microbiol
, vol.160
, pp. 785-791
-
-
Mesak, L.R.1
Davies, J.2
-
140
-
-
50949111839
-
Effects of subinhibitory concentrations of antibiotics on SOS and DNA repair gene expression in Staphylococcus aureus
-
Mesak LR, Miao V & Davies J (2008) Effects of subinhibitory concentrations of antibiotics on SOS and DNA repair gene expression in Staphylococcus aureus. Antimicrob Agents Chemother 52: 3394-3397.
-
(2008)
Antimicrob Agents Chemother
, vol.52
, pp. 3394-3397
-
-
Mesak, L.R.1
Miao, V.2
Davies, J.3
-
141
-
-
22744444676
-
After 30 years of study, the bacterial SOS response still surprises us
-
Michel B (2005) After 30 years of study, the bacterial SOS response still surprises us. PLoS Biol 3: e255.
-
(2005)
PLoS Biol
, vol.3
, pp. e255
-
-
Michel, B.1
-
142
-
-
84858863122
-
Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli
-
Mika F, Busse S, Possling A, Berkholz J, Tschowri N, Sommerfeldt N, Pruteanu M & Hengge R (2012) Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli. Mol Microbiol 84: 51-65.
-
(2012)
Mol Microbiol
, vol.84
, pp. 51-65
-
-
Mika, F.1
Busse, S.2
Possling, A.3
Berkholz, J.4
Tschowri, N.5
Sommerfeldt, N.6
Pruteanu, M.7
Hengge, R.8
-
143
-
-
0141995012
-
DpiA binding to the replication origin of Escherichia coli plasmids and chromosomes destabilizes plasmid inheritance and induces the bacterial SOS response
-
Miller C, Ingmer H, Thomsen LE, Skarstad K & Cohen SN (2003) DpiA binding to the replication origin of Escherichia coli plasmids and chromosomes destabilizes plasmid inheritance and induces the bacterial SOS response. J Bacteriol 185: 6025-6031.
-
(2003)
J Bacteriol
, vol.185
, pp. 6025-6031
-
-
Miller, C.1
Ingmer, H.2
Thomsen, L.E.3
Skarstad, K.4
Cohen, S.N.5
-
144
-
-
4644351908
-
SOS response induction by beta-lactams and bacterial defense against antibiotic lethality
-
Miller C, Thomsen LE, Gaggero C, Mosseri R, Ingmer H & Cohen SN (2004) SOS response induction by beta-lactams and bacterial defense against antibiotic lethality. Science 305: 1629-1631.
-
(2004)
Science
, vol.305
, pp. 1629-1631
-
-
Miller, C.1
Thomsen, L.E.2
Gaggero, C.3
Mosseri, R.4
Ingmer, H.5
Cohen, S.N.6
-
145
-
-
84864053728
-
Escherichia coli DinB inhibits replication fork progression without significantly inducing the SOS response
-
Mori T, Nakamura T, Okazaki N, Furukohri A, Maki H & Akiyama MT (2012) Escherichia coli DinB inhibits replication fork progression without significantly inducing the SOS response. Genes Genet Syst 87: 75-87.
-
(2012)
Genes Genet Syst
, vol.87
, pp. 75-87
-
-
Mori, T.1
Nakamura, T.2
Okazaki, N.3
Furukohri, A.4
Maki, H.5
Akiyama, M.T.6
-
146
-
-
0034669125
-
All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis
-
Napolitano R, Janel-Bintz R, Wagner J & Fuchs RP (2000) All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis. EMBO J 19: 6259-6265.
-
(2000)
EMBO J
, vol.19
, pp. 6259-6265
-
-
Napolitano, R.1
Janel-Bintz, R.2
Wagner, J.3
Fuchs, R.P.4
-
147
-
-
0035168287
-
The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation
-
Narumi I, Satoh K, Kikuchi M, Funayama T, Yanagisawa T, Kobayashi Y, Watanabe H & Yamamoto K (2001) The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation. J Bacteriol 183: 6951-6956.
-
(2001)
J Bacteriol
, vol.183
, pp. 6951-6956
-
-
Narumi, I.1
Satoh, K.2
Kikuchi, M.3
Funayama, T.4
Yanagisawa, T.5
Kobayashi, Y.6
Watanabe, H.7
Yamamoto, K.8
-
148
-
-
84883379382
-
Effects of subinhibitory concentrations of antimicrobial agents on Escherichia coli O157:H7 Shiga toxin release and role of the SOS response
-
Nassar FJ, Rahal EA, Sabra A & Matar GM (2013) Effects of subinhibitory concentrations of antimicrobial agents on Escherichia coli O157:H7 Shiga toxin release and role of the SOS response. Foodborne Pathog Dis 10: 805-812.
-
(2013)
Foodborne Pathog Dis
, vol.10
, pp. 805-812
-
-
Nassar, F.J.1
Rahal, E.A.2
Sabra, A.3
Matar, G.M.4
-
149
-
-
56949091710
-
Fluence-response dynamics of the UV-induced SOS response in Escherichia coli
-
Ni M, Yang L, Liu XL & Qi O (2008) Fluence-response dynamics of the UV-induced SOS response in Escherichia coli. Curr Microbiol 57: 521-526.
-
(2008)
Curr Microbiol
, vol.57
, pp. 521-526
-
-
Ni, M.1
Yang, L.2
Liu, X.L.3
Qi, O.4
-
150
-
-
0024121518
-
RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation
-
Nohmi T, Battista JR, Dodson LA & Walker GC (1988) RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation. P Natl Acad Sci USA 85: 1816-1820.
-
(1988)
P Natl Acad Sci USA
, vol.85
, pp. 1816-1820
-
-
Nohmi, T.1
Battista, J.R.2
Dodson, L.A.3
Walker, G.C.4
-
151
-
-
84874682458
-
Antibiotic resistance acquired through a DNA damage-inducible response in Acinetobacter baumannii
-
Norton MD, Spilkia AJ & Godoy VG (2013) Antibiotic resistance acquired through a DNA damage-inducible response in Acinetobacter baumannii. J Bacteriol 195: 1335-1345.
-
(2013)
J Bacteriol
, vol.195
, pp. 1335-1345
-
-
Norton, M.D.1
Spilkia, A.J.2
Godoy, V.G.3
-
152
-
-
0033521006
-
Role of iron and superoxide for generation of hydroxyl radical, oxidative DNA lesions, and mutagenesis in Escherichia coli
-
Nunoshiba T, Obata F, Boss AC, Oikawa S, Mori T, Kawanishi S & Yamamoto E (1999) Role of iron and superoxide for generation of hydroxyl radical, oxidative DNA lesions, and mutagenesis in Escherichia coli. J Biol Chem 274: 34832-34837.
-
(1999)
J Biol Chem
, vol.274
, pp. 34832-34837
-
-
Nunoshiba, T.1
Obata, F.2
Boss, A.C.3
Oikawa, S.4
Mori, T.5
Kawanishi, S.6
Yamamoto, E.7
-
153
-
-
81155134061
-
Comparison of macromolecular oxidation by reactive oxygen species in three bacterial genera exposed to different antibiotics
-
Paez PL, Becerra MC & Albesa I (2011) Comparison of macromolecular oxidation by reactive oxygen species in three bacterial genera exposed to different antibiotics. Cell Biochem Biophys 61: 467-472.
-
(2011)
Cell Biochem Biophys
, vol.61
, pp. 467-472
-
-
Paez, P.L.1
Becerra, M.C.2
Albesa, I.3
-
154
-
-
0037799191
-
Uncoupling of leading- and lagging-strand DNA replication during lesion bypass in vivo
-
Pages V & Fuchs RP (2003) Uncoupling of leading- and lagging-strand DNA replication during lesion bypass in vivo. Science 300: 1300-1303.
-
(2003)
Science
, vol.300
, pp. 1300-1303
-
-
Pages, V.1
Fuchs, R.P.2
-
155
-
-
0037349448
-
recX, a new SOS gene that is co-transcribed with the recA gene in Escherichia coli
-
Pages V, Koffel-Schwartz N & Fuchs RP (2003) recX, a new SOS gene that is co-transcribed with the recA gene in Escherichia coli. DNA Repair (Amst) 2: 273-284.
-
(2003)
DNA Repair (Amst)
, vol.2
, pp. 273-284
-
-
Pages, V.1
Koffel-Schwartz, N.2
Fuchs, R.P.3
-
156
-
-
14244266086
-
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
-
Pandey DP & Gerdes K (2005) Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res 33: 966-976.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 966-976
-
-
Pandey, D.P.1
Gerdes, K.2
-
158
-
-
34249789279
-
Spontaneous DNA breakage in single living Escherichia coli cells
-
Pennington JM & Rosenberg SM (2007) Spontaneous DNA breakage in single living Escherichia coli cells. Nat Genet 39: 797-802.
-
(2007)
Nat Genet
, vol.39
, pp. 797-802
-
-
Pennington, J.M.1
Rosenberg, S.M.2
-
159
-
-
70349775652
-
An SOS inhibitor that binds to free RecA protein: the PsiB protein
-
Petrova V, Chitteni-Pattu S, Drees JC, Inman RB & Cox MM (2009) An SOS inhibitor that binds to free RecA protein: the PsiB protein. Mol Cell 36: 121-130.
-
(2009)
Mol Cell
, vol.36
, pp. 121-130
-
-
Petrova, V.1
Chitteni-Pattu, S.2
Drees, J.C.3
Inman, R.B.4
Cox, M.M.5
-
160
-
-
84876524188
-
Targeting of PBP1 by beta-lactams determines recA/SOS response activation in heterogeneous MRSA clinical strains
-
Plata KB, Riosa S, Singh CR, Rosato RR & Rosato AE (2013) Targeting of PBP1 by beta-lactams determines recA/SOS response activation in heterogeneous MRSA clinical strains. PLoS ONE 8: e61083.
-
(2013)
PLoS ONE
, vol.8
, pp. e61083
-
-
Plata, K.B.1
Riosa, S.2
Singh, C.R.3
Rosato, R.R.4
Rosato, A.E.5
-
161
-
-
20344370231
-
Norfloxacin-induced DNA gyrase cleavage complexes block Escherichia coli replication forks, causing double-stranded breaks in vivo
-
Pohlhaus JR & Kreuzer KN (2005) Norfloxacin-induced DNA gyrase cleavage complexes block Escherichia coli replication forks, causing double-stranded breaks in vivo. Mol Microbiol 56: 1416-1429.
-
(2005)
Mol Microbiol
, vol.56
, pp. 1416-1429
-
-
Pohlhaus, J.R.1
Kreuzer, K.N.2
-
162
-
-
84255187576
-
R we there yet? R-loop hazards to finishing the journey
-
Potenski CJ & Klein HL (2011) R we there yet? R-loop hazards to finishing the journey. Mol Cell 44: 848-850.
-
(2011)
Mol Cell
, vol.44
, pp. 848-850
-
-
Potenski, C.J.1
Klein, H.L.2
-
163
-
-
77951589688
-
Cooperation between translating ribosomes and RNA polymerase in transcription elongation
-
Proshkin S, Rahmouni AR, Mironov A & Nudler E (2010) Cooperation between translating ribosomes and RNA polymerase in transcription elongation. Science 328: 504-508.
-
(2010)
Science
, vol.328
, pp. 504-508
-
-
Proshkin, S.1
Rahmouni, A.R.2
Mironov, A.3
Nudler, E.4
-
164
-
-
33745920513
-
Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae
-
Prudhomme M, Attaiech L, Sanchez G, Martin B & Claverys JP (2006) Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae. Science 313: 89-92.
-
(2006)
Science
, vol.313
, pp. 89-92
-
-
Prudhomme, M.1
Attaiech, L.2
Sanchez, G.3
Martin, B.4
Claverys, J.P.5
-
165
-
-
12344324892
-
LexA cleavage is required for CTX prophage induction
-
Quinones M, Kimsey HH & Waldor MK (2005) LexA cleavage is required for CTX prophage induction. Mol Cell 17: 291-300.
-
(2005)
Mol Cell
, vol.17
, pp. 291-300
-
-
Quinones, M.1
Kimsey, H.H.2
Waldor, M.K.3
-
166
-
-
0016604616
-
SOS repair hypothesis: phenomenology of an inducible DNA repair which is accompanied by mutagenesis
-
Radman M (1975) SOS repair hypothesis: phenomenology of an inducible DNA repair which is accompanied by mutagenesis. Basic Life Sci 5A: 355-367.
-
(1975)
Basic Life Sci
, vol.5A
, pp. 355-367
-
-
Radman, M.1
-
167
-
-
0035812657
-
Localization of Fe(2+) at an RTGR sequence within a DNA duplex explains preferential cleavage by Fe(2+) and H2O2
-
Rai P, Cole TD, Wemmer DE & Linn S (2001) Localization of Fe(2+) at an RTGR sequence within a DNA duplex explains preferential cleavage by Fe(2+) and H2O2. J Mol Biol 312: 1089-1101.
-
(2001)
J Mol Biol
, vol.312
, pp. 1089-1101
-
-
Rai, P.1
Cole, T.D.2
Wemmer, D.E.3
Linn, S.4
-
168
-
-
79957851398
-
Molecular mechanisms of ultraviolet radiation-induced DNA damage and repair
-
Rastogi RP, Richa Kumar A, Tyagi MB & Sinha RP (2010) Molecular mechanisms of ultraviolet radiation-induced DNA damage and repair. J Nucleic Acids 2010: 592980.
-
(2010)
J Nucleic Acids
, vol.2010
, pp. 592980
-
-
Rastogi, R.P.1
Richa Kumar, A.2
Tyagi, M.B.3
Sinha, R.P.4
-
169
-
-
1842610540
-
Mfd, the bacterial transcription repair coupling factor: translocation, repair and termination
-
Roberts J & Park JS (2004) Mfd, the bacterial transcription repair coupling factor: translocation, repair and termination. Curr Opin Microbiol 7: 120-125.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 120-125
-
-
Roberts, J.1
Park, J.S.2
-
170
-
-
84859814431
-
The Escherichia coli SOS gene dinF protects against oxidative stress and bile salts
-
Rodriguez-Beltran J, Rodriguez-Rojas A, Guelfo JR, Couce A & Blazquez J (2012) The Escherichia coli SOS gene dinF protects against oxidative stress and bile salts. PLoS ONE 7: e34791.
-
(2012)
PLoS ONE
, vol.7
, pp. e34791
-
-
Rodriguez-Beltran, J.1
Rodriguez-Rojas, A.2
Guelfo, J.R.3
Couce, A.4
Blazquez, J.5
-
171
-
-
0036678794
-
Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics
-
Ronen M, Rosenberg R, Shraiman BI & Alon U (2002) Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. P Natl Acad Sci USA 99: 10555-10560.
-
(2002)
P Natl Acad Sci USA
, vol.99
, pp. 10555-10560
-
-
Ronen, M.1
Rosenberg, R.2
Shraiman, B.I.3
Alon, U.4
-
172
-
-
0020641572
-
A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region
-
Sancar A & Rupp WD (1983) A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region. Cell 33: 249-260.
-
(1983)
Cell
, vol.33
, pp. 249-260
-
-
Sancar, A.1
Rupp, W.D.2
-
173
-
-
33750953412
-
Down-regulation of radioresistance by LexA2 in Deinococcus radiodurans
-
Satoh K, Ohba H, Sghaier H & Narumi I (2006) Down-regulation of radioresistance by LexA2 in Deinococcus radiodurans. Microbiology 152: 3217-3226.
-
(2006)
Microbiology
, vol.152
, pp. 3217-3226
-
-
Satoh, K.1
Ohba, H.2
Sghaier, H.3
Narumi, I.4
-
174
-
-
84859005256
-
The role of Deinococcus radiodurans RecFOR proteins in homologous recombination
-
Satoh K, Kikuchi M, Ishaque AM, Ohba H, Yamada M, Tejima K, Onodera T & Narumi I (2012) The role of Deinococcus radiodurans RecFOR proteins in homologous recombination. DNA Repair (Amst) 11: 410-418.
-
(2012)
DNA Repair (Amst)
, vol.11
, pp. 410-418
-
-
Satoh, K.1
Kikuchi, M.2
Ishaque, A.M.3
Ohba, H.4
Yamada, M.5
Tejima, K.6
Onodera, T.7
Narumi, I.8
-
175
-
-
34347332162
-
The molecular mechanism of transcription-coupled DNA repair
-
Savery NJ (2007) The molecular mechanism of transcription-coupled DNA repair. Trends Microbiol 15: 326-333.
-
(2007)
Trends Microbiol
, vol.15
, pp. 326-333
-
-
Savery, N.J.1
-
176
-
-
0024024922
-
Fenton reactions in lipid phases
-
Schaich KM & Borg DC (1988) Fenton reactions in lipid phases. Lipids 23: 570-579.
-
(1988)
Lipids
, vol.23
, pp. 570-579
-
-
Schaich, K.M.1
Borg, D.C.2
-
177
-
-
84873584100
-
Opposing effects of aminocoumarins and fluoroquinolones on the SOS response and adaptability in Staphylococcus aureus
-
Schroder W, Goerke C & Wolz C (2013) Opposing effects of aminocoumarins and fluoroquinolones on the SOS response and adaptability in Staphylococcus aureus. J Antimicrob Chemother 68: 529-538.
-
(2013)
J Antimicrob Chemother
, vol.68
, pp. 529-538
-
-
Schroder, W.1
Goerke, C.2
Wolz, C.3
-
179
-
-
84883437471
-
Stress-induced condensation of bacterial genomes results in re-pairing of sister chromosomes: implications for double-strand DNA break repair
-
Shechter N, Zaltzman L, Weiner A, Brumfeld V, Shimoni E, Fridmann-Sirkis Y & Minsky A (2013) Stress-induced condensation of bacterial genomes results in re-pairing of sister chromosomes: implications for double-strand DNA break repair. J Biol Chem 288: 25659-25667.
-
(2013)
J Biol Chem
, vol.288
, pp. 25659-25667
-
-
Shechter, N.1
Zaltzman, L.2
Weiner, A.3
Brumfeld, V.4
Shimoni, E.5
Fridmann-Sirkis, Y.6
Minsky, A.7
-
180
-
-
84856034421
-
What limits the efficiency of double-strand break-dependent stress-induced mutation in Escherichia coli?
-
Shee C, Ponder R, Gibson JL & Rosenberg SM (2011) What limits the efficiency of double-strand break-dependent stress-induced mutation in Escherichia coli? J Mol Microbiol Biotechnol 21: 8-19.
-
(2011)
J Mol Microbiol Biotechnol
, vol.21
, pp. 8-19
-
-
Shee, C.1
Ponder, R.2
Gibson, J.L.3
Rosenberg, S.M.4
-
181
-
-
72449137780
-
An SOS-regulated type 2 toxin-antitoxin system
-
Singletary LA, Gibson JL, Tanner EJ, McKenzie GJ, Lee PL, Gonzalez C & Rosenberg SM (2009) An SOS-regulated type 2 toxin-antitoxin system. J Bacteriol 191: 7456-7465.
-
(2009)
J Bacteriol
, vol.191
, pp. 7456-7465
-
-
Singletary, L.A.1
Gibson, J.L.2
Tanner, E.J.3
McKenzie, G.J.4
Lee, P.L.5
Gonzalez, C.6
Rosenberg, S.M.7
-
182
-
-
84858972388
-
For MutY, it's all about the OG
-
Sobol RW (2012) For MutY, it's all about the OG. Chem Biol 19: 313-314.
-
(2012)
Chem Biol
, vol.19
, pp. 313-314
-
-
Sobol, R.W.1
-
183
-
-
0037462826
-
Escherichia coli RecX inhibits RecA recombinase and coprotease activities in vitro and in vivo
-
Stohl EA, Brockman JP, Burkle KL, Morimatsu K, Kowalczykowski SC & Seifert HS (2003) Escherichia coli RecX inhibits RecA recombinase and coprotease activities in vitro and in vivo. J Biol Chem 278: 2278-2285.
-
(2003)
J Biol Chem
, vol.278
, pp. 2278-2285
-
-
Stohl, E.A.1
Brockman, J.P.2
Burkle, K.L.3
Morimatsu, K.4
Kowalczykowski, S.C.5
Seifert, H.S.6
-
185
-
-
0029589928
-
cAMP-dependent SOS induction and mutagenesis in resting bacterial populations
-
Taddei F, Matic I & Radman M (1995) cAMP-dependent SOS induction and mutagenesis in resting bacterial populations. P Natl Acad Sci USA 92: 11736-11740.
-
(1995)
P Natl Acad Sci USA
, vol.92
, pp. 11736-11740
-
-
Taddei, F.1
Matic, I.2
Radman, M.3
-
186
-
-
0031725645
-
Mutational analysis of the Rhizobium etli recA operator
-
Tapias A & Barbe J (1998) Mutational analysis of the Rhizobium etli recA operator. J Bacteriol 180: 6325-6331.
-
(1998)
J Bacteriol
, vol.180
, pp. 6325-6331
-
-
Tapias, A.1
Barbe, J.2
-
187
-
-
17644379901
-
Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci
-
Ubeda C, Maiques E, Knecht E, Lasa I, Novick RP & Penades JR (2005) Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci. Mol Microbiol 56: 836-844.
-
(2005)
Mol Microbiol
, vol.56
, pp. 836-844
-
-
Ubeda, C.1
Maiques, E.2
Knecht, E.3
Lasa, I.4
Novick, R.P.5
Penades, J.R.6
-
188
-
-
84893790541
-
Fuse or die: how to survive the loss of Dam in Vibrio cholerae
-
Val ME, Kennedy SP, Soler-Bistue AJ, Barbe V, Bouchier C, Ducos-Galand M, Skovgaard O & Mazel D (2014) Fuse or die: how to survive the loss of Dam in Vibrio cholerae. Mol Microbiol 91: 665-678.
-
(2014)
Mol Microbiol
, vol.91
, pp. 665-678
-
-
Val, M.E.1
Kennedy, S.P.2
Soler-Bistue, A.J.3
Barbe, V.4
Bouchier, C.5
Ducos-Galand, M.6
Skovgaard, O.7
Mazel, D.8
-
189
-
-
79954415091
-
Bacterial SOS response: a food safety perspective
-
van der Veen S & Abee T (2011) Bacterial SOS response: a food safety perspective. Curr Opin Biotechnol 22: 136-142.
-
(2011)
Curr Opin Biotechnol
, vol.22
, pp. 136-142
-
-
van der Veen, S.1
Abee, T.2
-
190
-
-
27644580858
-
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites
-
Wade JT, Reppas NB, Church GM & Struhl K (2005) Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites. Genes Dev 19: 2619-2630.
-
(2005)
Genes Dev
, vol.19
, pp. 2619-2630
-
-
Wade, J.T.1
Reppas, N.B.2
Church, G.M.3
Struhl, K.4
-
191
-
-
84880916245
-
A component of gamma-radiation-induced cell death in E. coli is programmed and interlinked with activation of caspase-3 and SOS response
-
Wadhawan S, Gautam S & Sharma A (2013) A component of gamma-radiation-induced cell death in E. coli is programmed and interlinked with activation of caspase-3 and SOS response. Arch Microbiol 195: 545-557.
-
(2013)
Arch Microbiol
, vol.195
, pp. 545-557
-
-
Wadhawan, S.1
Gautam, S.2
Sharma, A.3
-
192
-
-
0001078874
-
The SOS response of Escherichia coli
-
(ed) - American Society of Microbiology, Washington, DC.
-
Walker GC (1996) The SOS response of Escherichia coli. Escherichia coli and Salmonella, Vol. 1 (Neidhardt FC, ed), pp. 1400-1416. American Society of Microbiology, Washington, DC.
-
(1996)
Escherichia coli and Salmonella
, vol.1
, pp. 1400-1416
-
-
Walker, G.C.1
Neidhardt, F.C.2
-
193
-
-
77955632920
-
Essential roles for imuA'- and imuB-encoded accessory factors in DnaE2-dependent mutagenesis in Mycobacterium tuberculosis
-
Warner DF, Ndwandwe DE, Abrahams GL, Kana BD, Machowski EE, Venclovas C & Mizrahi V (2010) Essential roles for imuA'- and imuB-encoded accessory factors in DnaE2-dependent mutagenesis in Mycobacterium tuberculosis. P Natl Acad Sci USA 107: 13093-13098.
-
(2010)
P Natl Acad Sci USA
, vol.107
, pp. 13093-13098
-
-
Warner, D.F.1
Ndwandwe, D.E.2
Abrahams, G.L.3
Kana, B.D.4
Machowski, E.E.5
Venclovas, C.6
Mizrahi, V.7
-
194
-
-
84881342072
-
R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli
-
Wimberly H, Shee C, Thornton PC, Sivaramakrishnan P, Rosenberg SM & Hastings PJ (2013) R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli. Nat Commun 4: 2115.
-
(2013)
Nat Commun
, vol.4
, pp. 2115
-
-
Wimberly, H.1
Shee, C.2
Thornton, P.C.3
Sivaramakrishnan, P.4
Rosenberg, S.M.5
Hastings, P.J.6
-
195
-
-
0031943348
-
The Bacillus subtilis DinR binding site: redefinition of the consensus sequence
-
Winterling KW, Chafin D, Hayes JJ, Sun J, Levine AS, Yasbin RE & Woodgate R (1998) The Bacillus subtilis DinR binding site: redefinition of the consensus sequence. J Bacteriol 180: 2201-2211.
-
(1998)
J Bacteriol
, vol.180
, pp. 2201-2211
-
-
Winterling, K.W.1
Chafin, D.2
Hayes, J.J.3
Sun, J.4
Levine, A.S.5
Yasbin, R.E.6
Woodgate, R.7
-
196
-
-
0016432158
-
Transformation and transfection in lysogenic strains of Bacillus subtilis: evidence for selective induction of prophage in competent cells
-
Yasbin RE, Wilson GA & Young FE (1975) Transformation and transfection in lysogenic strains of Bacillus subtilis: evidence for selective induction of prophage in competent cells. J Bacteriol 121: 296-304.
-
(1975)
J Bacteriol
, vol.121
, pp. 296-304
-
-
Yasbin, R.E.1
Wilson, G.A.2
Young, F.E.3
-
197
-
-
0032101713
-
Inhibition of Escherichia coli RecA coprotease activities by DinI
-
Yasuda T, Morimatsu K, Horii T, Nagata T & Ohmori H (1998) Inhibition of Escherichia coli RecA coprotease activities by DinI. EMBO J 17: 3207-3216.
-
(1998)
EMBO J
, vol.17
, pp. 3207-3216
-
-
Yasuda, T.1
Morimatsu, K.2
Horii, T.3
Nagata, T.4
Ohmori, H.5
-
198
-
-
79251606814
-
Modulation of Salmonella gene expression by subinhibitory concentrations of quinolones
-
Yim G, McClure J, Surette MG & Davies JE (2011) Modulation of Salmonella gene expression by subinhibitory concentrations of quinolones. J Antibiot (Tokyo) 64: 73-78.
-
(2011)
J Antibiot (Tokyo)
, vol.64
, pp. 73-78
-
-
Yim, G.1
McClure, J.2
Surette, M.G.3
Davies, J.E.4
-
199
-
-
0025275108
-
Induction of SOS genes in Escherichia coli and mutagenesis in Salmonella typhimurium by fluoroquinolones
-
Ysern P, Clerch B, Castano M, Gibert I, Barbe J & Llagostera M (1990) Induction of SOS genes in Escherichia coli and mutagenesis in Salmonella typhimurium by fluoroquinolones. Mutagenesis 5: 63-66.
-
(1990)
Mutagenesis
, vol.5
, pp. 63-66
-
-
Ysern, P.1
Clerch, B.2
Castano, M.3
Gibert, I.4
Barbe, J.5
Llagostera, M.6
-
200
-
-
77955602256
-
Structure of the LexA-DNA complex and implications for SOS box measurement
-
Zhang AP, Pigli YZ & Rice PA (2010) Structure of the LexA-DNA complex and implications for SOS box measurement. Nature 466: 883-886.
-
(2010)
Nature
, vol.466
, pp. 883-886
-
-
Zhang, A.P.1
Pigli, Y.Z.2
Rice, P.A.3
-
201
-
-
0141989893
-
Quorum sensing-dependent biofilms enhance colonization in Vibrio cholerae
-
Zhu J & Mekalanos JJ (2003) Quorum sensing-dependent biofilms enhance colonization in Vibrio cholerae. Dev Cell 5: 647-656.
-
(2003)
Dev Cell
, vol.5
, pp. 647-656
-
-
Zhu, J.1
Mekalanos, J.J.2
|