메뉴 건너뛰기




Volumn 191, Issue 24, 2009, Pages 7436-7446

Growth phase and (p)ppGpp control of IraD, a regulator of RpoS stability, in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI PROTEIN; LUCIFERASE; PROTEIN IRAD; RNA POLYMERASE; SIGMA FACTOR RPOS; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR DKSA; TRANSCRIPTION FACTOR RELA; TRANSCRIPTION FACTOR SPOT; UNCLASSIFIED DRUG; ZIDOVUDINE;

EID: 72449139712     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00412-09     Document Type: Article
Times cited : (46)

References (49)
  • 1
    • 65549155326 scopus 로고    scopus 로고
    • Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli
    • Aberg, A., J. Fernández-Vázquez, J. D. Cabrer-Panes, A. Sánchez, and C. Balsalobre. 2009. Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli. J. Bacteriol. 191:3226-3236.
    • (2009) J. Bacteriol. , vol.191 , pp. 3226-3236
    • Aberg, A.1    Fernández-Vázquez, J.2    Cabrer-Panes, J.D.3    Sánchez, A.4    Balsalobre, C.5
  • 2
    • 39849100395 scopus 로고    scopus 로고
    • Regulation of the fimB promoter: A case of differential regulation by ppGpp and DksA in vivo
    • Aberg, A., V. Shingler, and C. Balsalobre. 2008. Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo. Mol. Microbiol. 67:1223-1241.
    • (2008) Mol. Microbiol. , vol.67 , pp. 1223-1241
    • Aberg, A.1    Shingler, V.2    Balsalobre, C.3
  • 3
    • 0035951305 scopus 로고    scopus 로고
    • Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
    • Barker, M. M., T. Gaal, C. A. Josaitis, and R. L. Gourse. 2001. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J. Mol. Biol. 305:673-688.
    • (2001) J. Mol. Biol. , vol.305 , pp. 673-688
    • Barker, M.M.1    Gaal, T.2    Josaitis, C.A.3    Gourse, R.L.4
  • 4
    • 0035685975 scopus 로고    scopus 로고
    • Regulation of rRNA transcription correlates with nucleoside triphosphate sensing
    • Barker, M. M., and R. L. Gourse. 2001. Regulation of rRNA transcription correlates with nucleoside triphosphate sensing. J. Bacteriol. 183:6315-6323.
    • (2001) J. Bacteriol. , vol.183 , pp. 6315-6323
    • Barker, M.M.1    Gourse, R.L.2
  • 5
    • 0029961688 scopus 로고    scopus 로고
    • Acid shock induction of RpoS is mediated by the mouse virulence gene mviA of Salmonella typhimurium
    • Bearson, S. M., W. H. Benjamin, Jr., W. E. Swords, and J. W. Foster. 1996. Acid shock induction of RpoS is mediated by the mouse virulence gene mviA of Salmonella typhimurium. J. Bacteriol. 178:2572-2579.
    • (1996) J. Bacteriol. , vol.178 , pp. 2572-2579
    • Bearson, S.M.1    Benjamin Jr., W.H.2    Swords, W.E.3    Foster, J.W.4
  • 7
    • 0016611284 scopus 로고
    • Purification and properties of stringent factor
    • Block, R., and A. W. Haseltine. 1975. Purification and properties of stringent factor. J. Biol. Chem. 250:1212-1217.
    • (1975) J. Biol. Chem. , vol.250 , pp. 1212-1217
    • Block, R.1    Haseltine, A.W.2
  • 8
    • 0031939765 scopus 로고    scopus 로고
    • Regulation of RssB-dependent proteolysis in Escherichia coli: A role for acetyl phosphate in a response regulator-controlled process
    • Bouche, S., E. Klauck, D. Fischer, M. Lucassen, K. Jung, and R. Hengge-Aronis. 1998. Regulation of RssB-dependent proteolysis in Escherichia coli: a role for acetyl phosphate in a response regulator-controlled process. Mol. Microbiol. 27:787-795.
    • (1998) Mol. Microbiol. , vol.27 , pp. 787-795
    • Bouche, S.1    Klauck, E.2    Fischer, D.3    Lucassen, M.4    Jung, K.5    Hengge-Aronis, R.6
  • 10
    • 34547913090 scopus 로고    scopus 로고
    • PpGpp regulation of RpoS degradation via anti-adaptor protein IraP
    • Bougdour, A., and S. Gottesman. 2007. ppGpp regulation of RpoS degradation via anti-adaptor protein IraP. Proc. Natl. Acad. Sci. USA 104:12896-12901.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 12896-12901
    • Bougdour, A.1    Gottesman, S.2
  • 12
    • 0036331056 scopus 로고    scopus 로고
    • DksA affects ppGpp induction of RpoS at a translational level
    • DOI 10.1128/JB.184.16.4455-4465.2002
    • Brown, L., D. Gentry, T. Elliott, and M. Cashel. 2002. DksA affects ppGpp induction of RpoS at a translational level. J. Bacteriol. 184:4455-4465. (Pubitemid 34832574)
    • (2002) Journal of Bacteriology , vol.184 , Issue.16 , pp. 4455-4465
    • Brown, L.1    Gentry, D.2    Elliott, T.3    Cashel, M.4
  • 13
    • 0004286963 scopus 로고    scopus 로고
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, DC.
    • Cashel, M., D. R. Gentry, V. H. Hernandez, and D. Vinella. 1996. The stringent response, p. 1458-1496. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, DC.
    • (1996) The Stringent Response, P. 1458-1496.
    • Cashel, M.1    Gentry, D.R.2    Hernandez, V.H.3    Vinella, D.4
  • 14
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 15
    • 39249084651 scopus 로고    scopus 로고
    • RpoS regulation of gene expression during exponential growth of Escherichia coli K12
    • Dong, T., M. G. Kirchhof, and H. E. Schellhorn. 2008. RpoS regulation of gene expression during exponential growth of Escherichia coli K12. Mol. Genet. Genomics 279:267-277.
    • (2008) Mol. Genet. Genomics , vol.279 , pp. 267-277
    • Dong, T.1    Kirchhof, M.G.2    Schellhorn, H.E.3
  • 16
    • 57649220029 scopus 로고    scopus 로고
    • Control of RpoS in global gene expression of Escherichia coli in minimal media
    • Dong, T., and H. E. Schellhorn. 2009. Control of RpoS in global gene expression of Escherichia coli in minimal media. Mol. Genet. Genomics 281:19-33.
    • (2009) Mol. Genet. Genomics , vol.281 , pp. 19-33
    • Dong, T.1    Schellhorn, H.E.2
  • 17
    • 0027139270 scopus 로고
    • Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp
    • Gentry, D. R., V. J. Hernandez, L. H. Nguyen, D. B. Jensen, and M. Cashel. 1993. Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp. J. Bacteriol. 175:7982-7989.
    • (1993) J. Bacteriol. , vol.175 , pp. 7982-7989
    • Gentry, D.R.1    Hernandez, V.J.2    Nguyen, L.H.3    Jensen, D.B.4    Cashel, M.5
  • 18
    • 47749126180 scopus 로고    scopus 로고
    • Synthetic growth phenotypes of Escherichia coli lacking ppGpp and transketolase a (tktA) are due to ppGpp-mediated transcriptional regulation of tktB
    • DOI 10.1111/j.1365-2958.2008.06317.x
    • Harinarayanan, R., H. Murphy, and M. Cashel. 2008. Synthetic growth phenotypes of Escherichia coli lacking ppGpp and transketolase A (tktA) are due to ppGpp-mediated transcriptional regulation of tktB. Mol. Microbiol. 69:882-894. (Pubitemid 352033308)
    • (2008) Molecular Microbiology , vol.69 , Issue.4 , pp. 882-894
    • Harinarayanan, R.1    Murphy, H.2    Cashel, M.3
  • 19
    • 0029843811 scopus 로고    scopus 로고
    • Back to log phase: σ(S) as a global regulator in the osmotic control of gene expression in Escherichia coli
    • Hengge-Aronis, R. 1996. Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli. Mol. Microbiol. 21:887-893. (Pubitemid 26297756)
    • (1996) Molecular Microbiology , vol.21 , Issue.5 , pp. 887-893
    • Hengge-Aronis, R.1
  • 20
    • 0036198628 scopus 로고    scopus 로고
    • Recent insights into the general stress response regulatory network in Escherichia coli
    • Hengge-Aronis, R. 2002. Recent insights into the general stress response regulatory network in Escherichia coli. J. Mol. Microbiol. Biotechnol. 4:341-346. (Pubitemid 34256711)
    • (2002) Journal of Molecular Microbiology and Biotechnology , vol.4 , Issue.3 , pp. 341-346
    • Hengge-Aronis, R.1
  • 22
    • 0025947362 scopus 로고
    • Escherichia coli ppGpp synthetase II activity requires spoT
    • Hernandez, V. J., and H. Bremer. 1991. Escherichia coli ppGpp synthetase II activity requires spoT. J. Biol. Chem. 266:5991-5999. (Pubitemid 21909593)
    • (1991) Journal of Biological Chemistry , vol.266 , Issue.9 , pp. 5991-5999
    • Hernandez, V.J.1    Bremer, H.2
  • 23
    • 34548720319 scopus 로고    scopus 로고
    • The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli
    • Klauck, E., A. Typas, and R. Hengge. 2007. The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli. Sci. Prog. 90:103-127.
    • (2007) Sci. Prog. , vol.90 , pp. 103-127
    • Klauck, E.1    Typas, A.2    Hengge, R.3
  • 24
    • 6044228192 scopus 로고    scopus 로고
    • S-dependent genes and identification of their promoter sequences
    • S- dependent genes and identification of their promoter sequences. J. Bacteriol. 186:7186-7195.
    • (2004) J. Bacteriol. , vol.186 , pp. 7186-7195
    • Lacour, S.1    Landini, P.2
  • 25
    • 0029082430 scopus 로고
    • Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli
    • Lange, R., D. Fischer, and R. Hengge-Aronis. 1995. Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli. J. Bacteriol. 177:4676-4680.
    • (1995) J. Bacteriol. , vol.177 , pp. 4676-4680
    • Lange, R.1    Fischer, D.2    Hengge-Aronis, R.3
  • 26
    • 0028176450 scopus 로고
    • The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability
    • Lange, R., and R. Hengge-Aronis. 1994. The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability. Genes Dev. 8:1600-1612.
    • (1994) Genes Dev. , vol.8 , pp. 1600-1612
    • Lange, R.1    Hengge-Aronis, R.2
  • 27
    • 0028019587 scopus 로고
    • The role of the sigma factor sigma S (KatF) in bacterial global regulation
    • Loewen, P. C., and R. Hengge-Aronis. 1994. The role of the sigma factor sigma S (KatF) in bacterial global regulation. Annu. Rev. Microbiol. 48:53-80.
    • (1994) Annu. Rev. Microbiol. , vol.48 , pp. 53-80
    • Loewen, P.C.1    Hengge-Aronis, R.2
  • 28
    • 34447540221 scopus 로고    scopus 로고
    • Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli
    • Magnusson, L. U., B. Gummesson, P. Joksimovic, A. Farewell, and T. Nystrom. 2007. Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli. J. Bacteriol. 189:5193-5202.
    • (2007) J. Bacteriol. , vol.189 , pp. 5193-5202
    • Magnusson, L.U.1    Gummesson, B.2    Joksimovic, P.3    Farewell, A.4    Nystrom, T.5
  • 30
    • 0034002888 scopus 로고    scopus 로고
    • Regulation of sigma S degradation in Salmonella enterica var. typhimurium: In vivo interactions between sigma S, the response regulator MviA(RssB) and ClpX
    • Moreno, M., J. P. Audia, S. M. Bearson, C. Webb, and J. W. Foster. 2000. Regulation of sigma S degradation in Salmonella enterica var. typhimurium: in vivo interactions between sigma S, the response regulator MviA(RssB) and ClpX. J. Mol. Microbiol. Biotechnol. 2:245-254.
    • (2000) J. Mol. Microbiol. Biotechnol. , vol.2 , pp. 245-254
    • Moreno, M.1    Audia, J.P.2    Bearson, S.M.3    Webb, C.4    Foster, J.W.5
  • 32
    • 0029943235 scopus 로고    scopus 로고
    • Control of spoT-dependent ppGpp synthesis and degradation in Escherichia coli
    • Murray, K. D., and H. Bremer. 1996. Control of spoT-dependent ppGpp synthesis and degradation in Escherichia coli. J. Mol. Biol. 259:41-57.
    • (1996) J. Mol. Biol. , vol.259 , pp. 41-57
    • Murray, K.D.1    Bremer, H.2
  • 34
    • 4043069926 scopus 로고    scopus 로고
    • DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
    • Paul, B. J., M. M. Barker, W. Ross, D. A. Schneider, C. Webb, J. W. Foster, and R. L. Gourse. 2004. DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. Cell 118:311-322.
    • (2004) Cell , vol.118 , pp. 311-322
    • Paul, B.J.1    Barker, M.M.2    Ross, W.3    Schneider, D.A.4    Webb, C.5    Foster, J.W.6    Gourse, R.L.7
  • 35
    • 20344363655 scopus 로고    scopus 로고
    • DksA potentiates direct activation of amino acid promoters by ppGpp
    • Paul, B. J., M. B. Berkmen, and R. L. Gourse. 2005. DksA potentiates direct activation of amino acid promoters by ppGpp. Proc. Natl. Acad. Sci. USA 102:7823-7828.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 7823-7828
    • Paul, B.J.1    Berkmen, M.B.2    Gourse, R.L.3
  • 36
    • 6044235523 scopus 로고    scopus 로고
    • RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation site
    • Peterson, C. N., N. Ruiz, and T. J. Silhavy. 2004. RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation site. J. Bacteriol. 186:7403-7410.
    • (2004) J. Bacteriol. , vol.186 , pp. 7403-7410
    • Peterson, C.N.1    Ruiz, N.2    Silhavy, T.J.3
  • 38
    • 0029983001 scopus 로고    scopus 로고
    • The response regulator SprE controls the stability of RpoS
    • Pratt, L. A., and T. J. Silhavy. 1996. The response regulator SprE controls the stability of RpoS. Proc. Natl. Acad. Sci. USA 93:2488-2492.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 2488-2492
    • Pratt, L.A.1    Silhavy, T.J.2
  • 46
    • 0025992789 scopus 로고
    • Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
    • Xiao, H., M. Kalman, K. Ikehara, S. Zemel, G. Glaser, and M. Cashel. 1991. Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA-null mutants can be eliminated by spoT-null mutations. J. Biol. Chem. 266:5980-5990. (Pubitemid 21909592)
    • (1991) Journal of Biological Chemistry , vol.266 , Issue.9 , pp. 5980-5990
    • Xiao, H.1    Kalman, M.2    Ikehara, K.3    Zemel, S.4    Glaser, G.5    Cashel, M.6
  • 47
    • 0031884182 scopus 로고    scopus 로고
    • Regulation of proteolysis of the stationary-phase sigma factor RpoS
    • Zhou, Y., and S. Gottesman. 1998. Regulation of proteolysis of the stationary-phase sigma factor RpoS. J. Bacteriol. 180:1154-1158. (Pubitemid 28119472)
    • (1998) Journal of Bacteriology , vol.180 , Issue.5 , pp. 1154-1158
    • Zhou, Y.1    Gottesman, S.2
  • 49
    • 0032539903 scopus 로고    scopus 로고
    • "stringent" RNA polymerases in Escherichia coli
    • Zhou, Y. N., and D. J. Jin. 1998. The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli. Proc. Natl. Acad. Sci. USA 95:2908-2913.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 2908-2913
    • Zhou, Y.N.1    Jin, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.