-
1
-
-
65549155326
-
Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli
-
Aberg, A., J. Fernández-Vázquez, J. D. Cabrer-Panes, A. Sánchez, and C. Balsalobre. 2009. Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli. J. Bacteriol. 191:3226-3236.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3226-3236
-
-
Aberg, A.1
Fernández-Vázquez, J.2
Cabrer-Panes, J.D.3
Sánchez, A.4
Balsalobre, C.5
-
2
-
-
39849100395
-
Regulation of the fimB promoter: A case of differential regulation by ppGpp and DksA in vivo
-
Aberg, A., V. Shingler, and C. Balsalobre. 2008. Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo. Mol. Microbiol. 67:1223-1241.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 1223-1241
-
-
Aberg, A.1
Shingler, V.2
Balsalobre, C.3
-
3
-
-
0035951305
-
Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
-
Barker, M. M., T. Gaal, C. A. Josaitis, and R. L. Gourse. 2001. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J. Mol. Biol. 305:673-688.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 673-688
-
-
Barker, M.M.1
Gaal, T.2
Josaitis, C.A.3
Gourse, R.L.4
-
4
-
-
0035685975
-
Regulation of rRNA transcription correlates with nucleoside triphosphate sensing
-
Barker, M. M., and R. L. Gourse. 2001. Regulation of rRNA transcription correlates with nucleoside triphosphate sensing. J. Bacteriol. 183:6315-6323.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6315-6323
-
-
Barker, M.M.1
Gourse, R.L.2
-
5
-
-
0029961688
-
Acid shock induction of RpoS is mediated by the mouse virulence gene mviA of Salmonella typhimurium
-
Bearson, S. M., W. H. Benjamin, Jr., W. E. Swords, and J. W. Foster. 1996. Acid shock induction of RpoS is mediated by the mouse virulence gene mviA of Salmonella typhimurium. J. Bacteriol. 178:2572-2579.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2572-2579
-
-
Bearson, S.M.1
Benjamin Jr., W.H.2
Swords, W.E.3
Foster, J.W.4
-
6
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F. R., G. Plunkett III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
7
-
-
0016611284
-
Purification and properties of stringent factor
-
Block, R., and A. W. Haseltine. 1975. Purification and properties of stringent factor. J. Biol. Chem. 250:1212-1217.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 1212-1217
-
-
Block, R.1
Haseltine, A.W.2
-
8
-
-
0031939765
-
Regulation of RssB-dependent proteolysis in Escherichia coli: A role for acetyl phosphate in a response regulator-controlled process
-
Bouche, S., E. Klauck, D. Fischer, M. Lucassen, K. Jung, and R. Hengge-Aronis. 1998. Regulation of RssB-dependent proteolysis in Escherichia coli: a role for acetyl phosphate in a response regulator-controlled process. Mol. Microbiol. 27:787-795.
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 787-795
-
-
Bouche, S.1
Klauck, E.2
Fischer, D.3
Lucassen, M.4
Jung, K.5
Hengge-Aronis, R.6
-
10
-
-
34547913090
-
PpGpp regulation of RpoS degradation via anti-adaptor protein IraP
-
Bougdour, A., and S. Gottesman. 2007. ppGpp regulation of RpoS degradation via anti-adaptor protein IraP. Proc. Natl. Acad. Sci. USA 104:12896-12901.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 12896-12901
-
-
Bougdour, A.1
Gottesman, S.2
-
12
-
-
0036331056
-
DksA affects ppGpp induction of RpoS at a translational level
-
DOI 10.1128/JB.184.16.4455-4465.2002
-
Brown, L., D. Gentry, T. Elliott, and M. Cashel. 2002. DksA affects ppGpp induction of RpoS at a translational level. J. Bacteriol. 184:4455-4465. (Pubitemid 34832574)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.16
, pp. 4455-4465
-
-
Brown, L.1
Gentry, D.2
Elliott, T.3
Cashel, M.4
-
13
-
-
0004286963
-
-
F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, DC.
-
Cashel, M., D. R. Gentry, V. H. Hernandez, and D. Vinella. 1996. The stringent response, p. 1458-1496. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, DC.
-
(1996)
The Stringent Response, P. 1458-1496.
-
-
Cashel, M.1
Gentry, D.R.2
Hernandez, V.H.3
Vinella, D.4
-
14
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
15
-
-
39249084651
-
RpoS regulation of gene expression during exponential growth of Escherichia coli K12
-
Dong, T., M. G. Kirchhof, and H. E. Schellhorn. 2008. RpoS regulation of gene expression during exponential growth of Escherichia coli K12. Mol. Genet. Genomics 279:267-277.
-
(2008)
Mol. Genet. Genomics
, vol.279
, pp. 267-277
-
-
Dong, T.1
Kirchhof, M.G.2
Schellhorn, H.E.3
-
16
-
-
57649220029
-
Control of RpoS in global gene expression of Escherichia coli in minimal media
-
Dong, T., and H. E. Schellhorn. 2009. Control of RpoS in global gene expression of Escherichia coli in minimal media. Mol. Genet. Genomics 281:19-33.
-
(2009)
Mol. Genet. Genomics
, vol.281
, pp. 19-33
-
-
Dong, T.1
Schellhorn, H.E.2
-
17
-
-
0027139270
-
Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp
-
Gentry, D. R., V. J. Hernandez, L. H. Nguyen, D. B. Jensen, and M. Cashel. 1993. Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp. J. Bacteriol. 175:7982-7989.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 7982-7989
-
-
Gentry, D.R.1
Hernandez, V.J.2
Nguyen, L.H.3
Jensen, D.B.4
Cashel, M.5
-
18
-
-
47749126180
-
Synthetic growth phenotypes of Escherichia coli lacking ppGpp and transketolase a (tktA) are due to ppGpp-mediated transcriptional regulation of tktB
-
DOI 10.1111/j.1365-2958.2008.06317.x
-
Harinarayanan, R., H. Murphy, and M. Cashel. 2008. Synthetic growth phenotypes of Escherichia coli lacking ppGpp and transketolase A (tktA) are due to ppGpp-mediated transcriptional regulation of tktB. Mol. Microbiol. 69:882-894. (Pubitemid 352033308)
-
(2008)
Molecular Microbiology
, vol.69
, Issue.4
, pp. 882-894
-
-
Harinarayanan, R.1
Murphy, H.2
Cashel, M.3
-
19
-
-
0029843811
-
Back to log phase: σ(S) as a global regulator in the osmotic control of gene expression in Escherichia coli
-
Hengge-Aronis, R. 1996. Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli. Mol. Microbiol. 21:887-893. (Pubitemid 26297756)
-
(1996)
Molecular Microbiology
, vol.21
, Issue.5
, pp. 887-893
-
-
Hengge-Aronis, R.1
-
20
-
-
0036198628
-
Recent insights into the general stress response regulatory network in Escherichia coli
-
Hengge-Aronis, R. 2002. Recent insights into the general stress response regulatory network in Escherichia coli. J. Mol. Microbiol. Biotechnol. 4:341-346. (Pubitemid 34256711)
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, Issue.3
, pp. 341-346
-
-
Hengge-Aronis, R.1
-
22
-
-
0025947362
-
Escherichia coli ppGpp synthetase II activity requires spoT
-
Hernandez, V. J., and H. Bremer. 1991. Escherichia coli ppGpp synthetase II activity requires spoT. J. Biol. Chem. 266:5991-5999. (Pubitemid 21909593)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.9
, pp. 5991-5999
-
-
Hernandez, V.J.1
Bremer, H.2
-
23
-
-
34548720319
-
The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli
-
Klauck, E., A. Typas, and R. Hengge. 2007. The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli. Sci. Prog. 90:103-127.
-
(2007)
Sci. Prog.
, vol.90
, pp. 103-127
-
-
Klauck, E.1
Typas, A.2
Hengge, R.3
-
24
-
-
6044228192
-
S-dependent genes and identification of their promoter sequences
-
S- dependent genes and identification of their promoter sequences. J. Bacteriol. 186:7186-7195.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7186-7195
-
-
Lacour, S.1
Landini, P.2
-
25
-
-
0029082430
-
Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli
-
Lange, R., D. Fischer, and R. Hengge-Aronis. 1995. Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli. J. Bacteriol. 177:4676-4680.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4676-4680
-
-
Lange, R.1
Fischer, D.2
Hengge-Aronis, R.3
-
26
-
-
0028176450
-
The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability
-
Lange, R., and R. Hengge-Aronis. 1994. The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability. Genes Dev. 8:1600-1612.
-
(1994)
Genes Dev.
, vol.8
, pp. 1600-1612
-
-
Lange, R.1
Hengge-Aronis, R.2
-
27
-
-
0028019587
-
The role of the sigma factor sigma S (KatF) in bacterial global regulation
-
Loewen, P. C., and R. Hengge-Aronis. 1994. The role of the sigma factor sigma S (KatF) in bacterial global regulation. Annu. Rev. Microbiol. 48:53-80.
-
(1994)
Annu. Rev. Microbiol.
, vol.48
, pp. 53-80
-
-
Loewen, P.C.1
Hengge-Aronis, R.2
-
28
-
-
34447540221
-
Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli
-
Magnusson, L. U., B. Gummesson, P. Joksimovic, A. Farewell, and T. Nystrom. 2007. Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli. J. Bacteriol. 189:5193-5202.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 5193-5202
-
-
Magnusson, L.U.1
Gummesson, B.2
Joksimovic, P.3
Farewell, A.4
Nystrom, T.5
-
29
-
-
58849087095
-
A DNA damage response in Escherichia coli involving the alternative sigma factor, RpoS
-
Merrikh, H., A. E. Ferrazzoli, A. Bougdour, A. Olivier-Mason, and S. T. Lovett. 2009. A DNA damage response in Escherichia coli involving the alternative sigma factor, RpoS. Proc. Natl. Acad. Sci. USA 106:611-616.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 611-616
-
-
Merrikh, H.1
Ferrazzoli, A.E.2
Bougdour, A.3
Olivier-Mason, A.4
Lovett, S.T.5
-
30
-
-
0034002888
-
Regulation of sigma S degradation in Salmonella enterica var. typhimurium: In vivo interactions between sigma S, the response regulator MviA(RssB) and ClpX
-
Moreno, M., J. P. Audia, S. M. Bearson, C. Webb, and J. W. Foster. 2000. Regulation of sigma S degradation in Salmonella enterica var. typhimurium: in vivo interactions between sigma S, the response regulator MviA(RssB) and ClpX. J. Mol. Microbiol. Biotechnol. 2:245-254.
-
(2000)
J. Mol. Microbiol. Biotechnol.
, vol.2
, pp. 245-254
-
-
Moreno, M.1
Audia, J.P.2
Bearson, S.M.3
Webb, C.4
Foster, J.W.5
-
32
-
-
0029943235
-
Control of spoT-dependent ppGpp synthesis and degradation in Escherichia coli
-
Murray, K. D., and H. Bremer. 1996. Control of spoT-dependent ppGpp synthesis and degradation in Escherichia coli. J. Mol. Biol. 259:41-57.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 41-57
-
-
Murray, K.D.1
Bremer, H.2
-
33
-
-
13244259382
-
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12
-
Patten, C. L., M. G. Kirchhof, M. R. Schertzberg, R. A. Morton, and H. E. Schellhorn. 2004. Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12. Mol. Genet. Genomics 272:580-591.
-
(2004)
Mol. Genet. Genomics
, vol.272
, pp. 580-591
-
-
Patten, C.L.1
Kirchhof, M.G.2
Schertzberg, M.R.3
Morton, R.A.4
Schellhorn, H.E.5
-
34
-
-
4043069926
-
DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
-
Paul, B. J., M. M. Barker, W. Ross, D. A. Schneider, C. Webb, J. W. Foster, and R. L. Gourse. 2004. DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. Cell 118:311-322.
-
(2004)
Cell
, vol.118
, pp. 311-322
-
-
Paul, B.J.1
Barker, M.M.2
Ross, W.3
Schneider, D.A.4
Webb, C.5
Foster, J.W.6
Gourse, R.L.7
-
35
-
-
20344363655
-
DksA potentiates direct activation of amino acid promoters by ppGpp
-
Paul, B. J., M. B. Berkmen, and R. L. Gourse. 2005. DksA potentiates direct activation of amino acid promoters by ppGpp. Proc. Natl. Acad. Sci. USA 102:7823-7828.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 7823-7828
-
-
Paul, B.J.1
Berkmen, M.B.2
Gourse, R.L.3
-
36
-
-
6044235523
-
RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation site
-
Peterson, C. N., N. Ruiz, and T. J. Silhavy. 2004. RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation site. J. Bacteriol. 186:7403-7410.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7403-7410
-
-
Peterson, C.N.1
Ruiz, N.2
Silhavy, T.J.3
-
38
-
-
0029983001
-
The response regulator SprE controls the stability of RpoS
-
Pratt, L. A., and T. J. Silhavy. 1996. The response regulator SprE controls the stability of RpoS. Proc. Natl. Acad. Sci. USA 93:2488-2492.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 2488-2492
-
-
Pratt, L.A.1
Silhavy, T.J.2
-
41
-
-
0027669778
-
38, is a second principal σ factor of RNA polymerase in stationary-phase Escherichia coli
-
Tanaka, K., Y. Takayanagi, N. Fujita, A. Ishihama, and H. Takahashi. 1993. Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli. Proc. Natl. Acad. Sci. USA 90:3511-3515. (Pubitemid 23111396)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.8
, pp. 3511-3515
-
-
Tanaka, K.1
Takayanagi, Y.2
Fujita, N.3
Ishihama, A.4
Takahashi, H.5
-
43
-
-
0026722421
-
Ligation-anchored PCR: A simple amplification technique with single-sided specificity
-
Troutt, A. B., M. G. McHeyzer-Williams, B. Pulendran, and G. J. Nossal. 1992. Ligation-anchored PCR: a simple amplification technique with single-sided specificity. Proc. Natl. Acad. Sci. USA 89:9823-9825.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 9823-9825
-
-
Troutt, A.B.1
McHeyzer-Williams, M.G.2
Pulendran, B.3
Nossal, G.J.4
-
44
-
-
0035956941
-
A genomic approach to gene fusion technology
-
Van Dyk, T. K., Y. Wei, M. K. Hanafey, M. Dolan, M. J. Reeve, J. A. Rafalski, L. B. Rothman-Denes, and R. A. LaRossa. 2001. A genomic approach to gene fusion technology. Proc. Natl. Acad. Sci. USA 98:2555-2560.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 2555-2560
-
-
Van Dyk, T.K.1
Wei, Y.2
Hanafey, M.K.3
Dolan, M.4
Reeve, M.J.5
Rafalski, J.A.6
Rothman-Denes, L.B.7
Larossa, R.A.8
-
45
-
-
14244256556
-
S-dependent genes, promoters, and sigma factor selectivity
-
S-dependent genes, promoters, and sigma factor selectivity. J. Bacteriol. 187:1591-1603.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
46
-
-
0025992789
-
Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
-
Xiao, H., M. Kalman, K. Ikehara, S. Zemel, G. Glaser, and M. Cashel. 1991. Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA-null mutants can be eliminated by spoT-null mutations. J. Biol. Chem. 266:5980-5990. (Pubitemid 21909592)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.9
, pp. 5980-5990
-
-
Xiao, H.1
Kalman, M.2
Ikehara, K.3
Zemel, S.4
Glaser, G.5
Cashel, M.6
-
47
-
-
0031884182
-
Regulation of proteolysis of the stationary-phase sigma factor RpoS
-
Zhou, Y., and S. Gottesman. 1998. Regulation of proteolysis of the stationary-phase sigma factor RpoS. J. Bacteriol. 180:1154-1158. (Pubitemid 28119472)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.5
, pp. 1154-1158
-
-
Zhou, Y.1
Gottesman, S.2
-
49
-
-
0032539903
-
"stringent" RNA polymerases in Escherichia coli
-
Zhou, Y. N., and D. J. Jin. 1998. The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli. Proc. Natl. Acad. Sci. USA 95:2908-2913.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2908-2913
-
-
Zhou, Y.N.1
Jin, D.J.2
|