메뉴 건너뛰기




Volumn 42, Issue 4, 2014, Pages 2366-2379

Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: A role for transcription stalling and Mfd helicase

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA; DING HELICASE; DNA BASE; GUANINE; HELICASE; MFD HELICASE; PROTEIN YEJH; REP HELICASE; RIBONUCLEASE H; RNA POLYMERASE; RNHA HELICASE; SINGLE STRANDED DNA; TOBRAMYCIN; UNCLASSIFIED DRUG;

EID: 84895814011     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt1259     Document Type: Article
Times cited : (28)

References (99)
  • 1
    • 0001078874 scopus 로고    scopus 로고
    • The SOS Response of Escherichia coli
    • Neidhardt, F.C. (ed.), American Society of Microbiology, Washington DC
    • Walker, G.C. (1996) The SOS Response of Escherichia coli. In: Neidhardt, F.C. (ed.), Escherichia coli and Salmonella, Vol. 1. American Society of Microbiology, Washington DC, pp. 1400-1416.
    • (1996) Escherichia Coli and Salmonella , vol.1 , pp. 1400-1416
    • Walker, G.C.1
  • 2
    • 78149442895 scopus 로고    scopus 로고
    • Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation
    • Baharoglu, Z., Bikard, D. and Mazel, D. (2010) Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation. PLoS Genet., 6, e1001165.
    • (2010) PLoS Genet. , vol.6
    • Baharoglu, Z.1    Bikard, D.2    Mazel, D.3
  • 3
    • 84860321684 scopus 로고    scopus 로고
    • Transformation-induced SOS regulation and carbon catabolite control of the V. Cholerae integron integrase: Connecting environment and genome plasticity
    • Baharoglu, Z., Krin, E. and Mazel, D. (2012) Transformation-induced SOS regulation and carbon catabolite control of the V. cholerae integron integrase: connecting environment and genome plasticity. J. Bacteriol., 194, 1659-1667.
    • (2012) J. Bacteriol. , vol.194 , pp. 1659-1667
    • Baharoglu, Z.1    Krin, E.2    Mazel, D.3
  • 4
    • 78649652503 scopus 로고    scopus 로고
    • Environmental toxicology and risk assessment of pharmaceuticals from hospital wastewater
    • Escher, B.I., Baumgartner, R., Koller, M., Treyer, K., Lienert, J. and McArdell, C.S. (2011) Environmental toxicology and risk assessment of pharmaceuticals from hospital wastewater. Water Res., 45, 75-92.
    • (2011) Water Res. , vol.45 , pp. 75-92
    • Escher, B.I.1    Baumgartner, R.2    Koller, M.3    Treyer, K.4    Lienert, J.5    McArdell, C.S.6
  • 5
    • 84860658168 scopus 로고    scopus 로고
    • Consumption-based approach for assessing the contribution of hospitals towards the load of pharmaceutical residues in municipal wastewater
    • Le Corre, K.S., Ort, C., Kateley, D., Allen, B., Escher, B.I. and Keller, J. (2012) Consumption-based approach for assessing the contribution of hospitals towards the load of pharmaceutical residues in municipal wastewater. Environ. Int., 45, 99-111.
    • (2012) Environ. Int. , vol.45 , pp. 99-111
    • Le Corre, K.S.1    Ort, C.2    Kateley, D.3    Allen, B.4    Escher, B.I.5    Keller, J.6
  • 7
    • 84873433431 scopus 로고    scopus 로고
    • Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review
    • Rizzo, L., Manaia, C., Merlin, C., Schwartz, T., Dagot, C., Ploy, M.C., Michael, I. and Fatta-Kassinos, D. (2013) Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: a review. Sci. Total Environ., 447, 345-360.
    • (2013) Sci. Total Environ. , vol.447 , pp. 345-360
    • Rizzo, L.1    Manaia, C.2    Merlin, C.3    Schwartz, T.4    Dagot, C.5    Ploy, M.C.6    Michael, I.7    Fatta-Kassinos, D.8
  • 8
    • 84868147186 scopus 로고    scopus 로고
    • Selection of resistance at lethal and non-lethal antibiotic concentrations
    • Hughes, D. and Andersson, D.I. (2012) Selection of resistance at lethal and non-lethal antibiotic concentrations. Curr. Opin. Microbiol., 15, 555-560.
    • (2012) Curr. Opin. Microbiol. , vol.15 , pp. 555-560
    • Hughes, D.1    Andersson, D.I.2
  • 9
    • 79955527229 scopus 로고    scopus 로고
    • Vibrio cholerae triggers SOS and mutagenesis in response to a wide range of antibiotics, a route towards multi-resistance
    • Baharoglu, Z. and Mazel, D. (2011) Vibrio cholerae triggers SOS and mutagenesis in response to a wide range of antibiotics, a route towards multi-resistance. Antimicrob. Agents Chemother., 55, 2438-2441.
    • (2011) Antimicrob. Agents Chemother. , vol.55 , pp. 2438-2441
    • Baharoglu, Z.1    Mazel, D.2
  • 10
    • 84876837863 scopus 로고    scopus 로고
    • RpoS plays a central role in the sos induction by sub-lethal aminoglycoside concentrations in Vibrio cholerae
    • Baharoglu, Z., Krin, E. and Mazel, D. (2013) RpoS plays a central role in the sos induction by sub-lethal aminoglycoside concentrations in Vibrio cholerae. PLoS Genet., 9, e1003421.
    • (2013) PLoS Genet. , vol.9
    • Baharoglu, Z.1    Krin, E.2    Mazel, D.3
  • 11
    • 33644661156 scopus 로고    scopus 로고
    • RNA polymerase encounters with DNA damage: Transcription-coupled repair or transcriptional mutagenesis?
    • Saxowsky, T.T. and Doetsch, P.W. (2006) RNA polymerase encounters with DNA damage: transcription-coupled repair or transcriptional mutagenesis? Chem. Rev., 106, 474-488.
    • (2006) Chem. Rev. , vol.106 , pp. 474-488
    • Saxowsky, T.T.1    Doetsch, P.W.2
  • 12
  • 13
    • 0026513966 scopus 로고
    • MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis
    • Maki, H. and Sekiguchi, M. (1992) MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis. Nature, 355, 273-275.
    • (1992) Nature , vol.355 , pp. 273-275
    • Maki, H.1    Sekiguchi, M.2
  • 14
    • 0030879766 scopus 로고    scopus 로고
    • Counteraction by MutT protein of transcriptional errors caused by oxidative damage
    • Taddei, F., Hayakawa, H., Bouton, M., Cirinesi, A., Matic, I., Sekiguchi, M. and Radman, M. (1997) Counteraction by MutT protein of transcriptional errors caused by oxidative damage. Science, 278, 128-130.
    • (1997) Science , vol.278 , pp. 128-130
    • Taddei, F.1    Hayakawa, H.2    Bouton, M.3    Cirinesi, A.4    Matic, I.5    Sekiguchi, M.6    Radman, M.7
  • 15
    • 84858972388 scopus 로고    scopus 로고
    • For MutY it's all about the OG
    • Sobol, R.W. (2012) For MutY, it's all about the OG. Chem. Biol., 19, 313-314.
    • (2012) Chem. Biol. , vol.19 , pp. 313-314
    • Sobol, R.W.1
  • 16
    • 79958729737 scopus 로고    scopus 로고
    • Escherichia coli Fpg glycosylase is nonrendundant and required for the rapid global repair of oxidized purine and pyrimidine damage in vivo
    • Schalow, B.J., Courcelle, C.T. and Courcelle, J. (2011) Escherichia coli Fpg glycosylase is nonrendundant and required for the rapid global repair of oxidized purine and pyrimidine damage in vivo. J. Mol. Biol., 410, 183-193.
    • (2011) J. Mol. Biol. , vol.410 , pp. 183-193
    • Schalow, B.J.1    Courcelle, C.T.2    Courcelle, J.3
  • 17
    • 0024332124 scopus 로고
    • Escherichia coli mutY gene encodes an adenine glycosylase active on G-A mispairs
    • Au, K.G., Clark, S., Miller, J.H. and Modrich, P. (1989) Escherichia coli mutY gene encodes an adenine glycosylase active on G-A mispairs. Proc. Natl Acad. Sci. USA, 86, 8877-8881.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 8877-8881
    • Au, K.G.1    Clark, S.2    Miller, J.H.3    Modrich, P.4
  • 18
    • 84859958491 scopus 로고    scopus 로고
    • Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics
    • Foti, J.J., Devadoss, B., Winkler, J.A., Collins, J.J. and Walker, G.C. (2012) Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics. Science, 336, 315-319.
    • (2012) Science , vol.336 , pp. 315-319
    • Foti, J.J.1    Devadoss, B.2    Winkler, J.A.3    Collins, J.J.4    Walker, G.C.5
  • 20
    • 0037040962 scopus 로고    scopus 로고
    • Activation of human MutS homologs by 8-oxo-guanine DNA damage
    • Mazurek, A., Berardini, M. and Fishel, R. (2002) Activation of human MutS homologs by 8-oxo-guanine DNA damage. J. Biol. Chem., 277, 8260-8266.
    • (2002) J. Biol. Chem. , vol.277 , pp. 8260-8266
    • Mazurek, A.1    Berardini, M.2    Fishel, R.3
  • 21
    • 33846597082 scopus 로고    scopus 로고
    • Physical and functional interactions between Escherichia coli MutY glycosylase and mismatch repair protein MutS
    • Bai, H. and Lu, A.L. (2007) Physical and functional interactions between Escherichia coli MutY glycosylase and mismatch repair protein MutS. J. Bacteriol., 189, 902-910.
    • (2007) J. Bacteriol. , vol.189 , pp. 902-910
    • Bai, H.1    Lu, A.L.2
  • 22
    • 80053645721 scopus 로고    scopus 로고
    • R-loop-mediated genomic instability is caused by impairment of replication fork progression
    • Gan, W., Guan, Z., Liu, J., Gui, T., Shen, K., Manley, J.L. and Li, X. (2011) R-loop-mediated genomic instability is caused by impairment of replication fork progression. Genes Dev., 25, 2041-2056.
    • (2011) Genes Dev. , vol.25 , pp. 2041-2056
    • Gan, W.1    Guan, Z.2    Liu, J.3    Gui, T.4    Shen, K.5    Manley, J.L.6    Li, X.7
  • 24
    • 84862763199 scopus 로고    scopus 로고
    • The conflict between DNA replication and transcription
    • McGlynn, P., Savery, N.J. and Dillingham, M.S. (2012) The conflict between DNA replication and transcription. Mol. Microbiol., 85, 12-20.
    • (2012) Mol. Microbiol. , vol.85 , pp. 12-20
    • McGlynn, P.1    Savery, N.J.2    Dillingham, M.S.3
  • 25
    • 84255198334 scopus 로고    scopus 로고
    • Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes
    • Helmrich, A., Ballarino, M. and Tora, L. (2011) Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes. Mol. Cell, 44, 966-977.
    • (2011) Mol. Cell , vol.44 , pp. 966-977
    • Helmrich, A.1    Ballarino, M.2    Tora, L.3
  • 26
    • 80052008241 scopus 로고    scopus 로고
    • Linking RNA polymerase backtracking to genome instability in E. Coli
    • Dutta, D., Shatalin, K., Epshtein, V., Gottesman, M.E. and Nudler, E. (2011) Linking RNA polymerase backtracking to genome instability in E. coli. Cell, 146, 533-543.
    • (2011) Cell , vol.146 , pp. 533-543
    • Dutta, D.1    Shatalin, K.2    Epshtein, V.3    Gottesman, M.E.4    Nudler, E.5
  • 27
    • 0026354699 scopus 로고
    • Escherichia coli mfd mutant deficient in "mutation frequency decline" lacks strand-specific repair: In vitro complementation with purified coupling factor
    • Selby, C.P., Witkin, E.M. and Sancar, A. (1991) Escherichia coli mfd mutant deficient in "mutation frequency decline" lacks strand-specific repair: in vitro complementation with purified coupling factor. Proc. Natl Acad. Sci. USA, 88, 11574-11578.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 11574-11578
    • Selby, C.P.1    Witkin, E.M.2    Sancar, A.3
  • 28
    • 79961209184 scopus 로고    scopus 로고
    • 8-Oxo-7, 8-dihydroguanine in DNA does not constitute a barrier to transcription, but is converted into transcription-blocking damage by OGG1
    • Kitsera, N., Stathis, D., Luhnsdorf, B., Muller, H., Carell, T., Epe, B. and Khobta, A. (2011) 8-Oxo-7, 8-dihydroguanine in DNA does not constitute a barrier to transcription, but is converted into transcription-blocking damage by OGG1. Nucleic Acids Res., 39, 5926-5934.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5926-5934
    • Kitsera, N.1    Stathis, D.2    Luhnsdorf, B.3    Muller, H.4    Carell, T.5    Epe, B.6    Khobta, A.7
  • 29
    • 52049097060 scopus 로고    scopus 로고
    • Effects of the bacterial transcription-repair coupling factor during transcription of DNA containing non-bulky lesions
    • Smith, A.J. and Savery, N.J. (2008) Effects of the bacterial transcription-repair coupling factor during transcription of DNA containing non-bulky lesions. DNA Repair, 7, 1670-1679.
    • (2008) DNA Repair , vol.7 , pp. 1670-1679
    • Smith, A.J.1    Savery, N.J.2
  • 30
    • 1842610540 scopus 로고    scopus 로고
    • Mfd, the bacterial transcription repair coupling factor: Translocation, repair and termination
    • Roberts, J. and Park, J.S. (2004) Mfd, the bacterial transcription repair coupling factor: translocation, repair and termination. Curr. Opin. Microbiol., 7, 120-125.
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 120-125
    • Roberts, J.1    Park, J.S.2
  • 31
    • 34347332162 scopus 로고    scopus 로고
    • The molecular mechanism of transcription-coupled DNA repair
    • Savery, N.J. (2007) The molecular mechanism of transcription-coupled DNA repair. Trends Microbiol., 15, 326-333.
    • (2007) Trends Microbiol. , vol.15 , pp. 326-333
    • Savery, N.J.1
  • 33
    • 84870058397 scopus 로고    scopus 로고
    • Interplay of DNA repair with transcription: From structures to mechanisms
    • Deaconescu, A.M., Artsimovitch, I. and Grigorieff, N. (2012) Interplay of DNA repair with transcription: from structures to mechanisms. Trends Biochem. Sci., 37, 543-552.
    • (2012) Trends Biochem. Sci. , vol.37 , pp. 543-552
    • Deaconescu, A.M.1    Artsimovitch, I.2    Grigorieff, N.3
  • 34
    • 84857712462 scopus 로고    scopus 로고
    • Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface
    • Deaconescu, A.M., Sevostyanova, A., Artsimovitch, I. and Grigorieff, N. (2012) Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface. Proc. Natl Acad. Sci. USA, 109, 3353-3358.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 3353-3358
    • Deaconescu, A.M.1    Sevostyanova, A.2    Artsimovitch, I.3    Grigorieff, N.4
  • 35
    • 0029892790 scopus 로고    scopus 로고
    • DNA excision repair
    • Sancar, A. (1996) DNA excision repair. Annu. Rev. Biochem., 65, 43-81.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 43-81
    • Sancar, A.1
  • 36
    • 77954371207 scopus 로고    scopus 로고
    • RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases
    • Baharoglu, Z., Lestini, R., Duigou, S. and Michel, B. (2010) RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases. Mol. Microbiol., 77, 324-336.
    • (2010) Mol. Microbiol. , vol.77 , pp. 324-336
    • Baharoglu, Z.1    Lestini, R.2    Duigou, S.3    Michel, B.4
  • 37
    • 0027078134 scopus 로고
    • Bound Lac repressor protein differentially inhibits the unwinding reactions catalyzed by DNA helicases
    • Yancey-Wrona, J.E. and Matson, S.W. (1992) Bound Lac repressor protein differentially inhibits the unwinding reactions catalyzed by DNA helicases. Nucleic Acids Res., 20, 6713-6721.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 6713-6721
    • Yancey-Wrona, J.E.1    Matson, S.W.2
  • 38
    • 75649142564 scopus 로고    scopus 로고
    • The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo
    • Boubakri, H., de Septenville, A.L., Viguera, E. and Michel, B. (2010) The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo. EMBO J., 29, 145-157.
    • (2010) EMBO J. , vol.29 , pp. 145-157
    • Boubakri, H.1    De Septenville, A.L.2    Viguera, E.3    Michel, B.4
  • 39
    • 84860578766 scopus 로고    scopus 로고
    • Replication fork reversal after replication-transcription collision
    • De Septenville, A.L., Duigou, S., Boubakri, H. and Michel, B. (2012) Replication fork reversal after replication-transcription collision. PLoS Genet., 8, e1002622.
    • (2012) PLoS Genet. , vol.8
    • De Septenville, A.L.1    Duigou, S.2    Boubakri, H.3    Michel, B.4
  • 40
    • 84255187576 scopus 로고    scopus 로고
    • R we there yet? R-loop hazards to finishing the journey
    • Potenski, C.J. and Klein, H.L. (2011) R we there yet? R-loop hazards to finishing the journey. Mol. Cell, 44, 848-850.
    • (2011) Mol. Cell , vol.44 , pp. 848-850
    • Potenski, C.J.1    Klein, H.L.2
  • 42
    • 33846911496 scopus 로고    scopus 로고
    • Construction of a Vibrio splendidus mutant lacking the metalloprotease gene vsm by use of a novel counterselectable suicide vector
    • Le Roux, F., Binesse, J., Saulnier, D. and Mazel, D. (2007) Construction of a Vibrio splendidus mutant lacking the metalloprotease gene vsm by use of a novel counterselectable suicide vector. Appl. Environ. Microbiol., 73, 777-784.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 777-784
    • Le Roux, F.1    Binesse, J.2    Saulnier, D.3    Mazel, D.4
  • 43
    • 52949114581 scopus 로고    scopus 로고
    • FtsK-dependent dimer resolution on multiple chromosomes in the pathogen Vibrio cholerae
    • Val, M.E., Kennedy, S.P., El Karoui, M., Bonne, L., Chevalier, F. and Barre, F.X. (2008) FtsK-dependent dimer resolution on multiple chromosomes in the pathogen Vibrio cholerae. PLoS Genet., 4, e1000201.
    • (2008) PLoS Genet. , vol.4
    • Val, M.E.1    Kennedy, S.P.2    El Karoui, M.3    Bonne, L.4    Chevalier, F.5    Barre, F.X.6
  • 44
    • 0037151792 scopus 로고    scopus 로고
    • Construction of a mariner-based transposon for epitope-tagging and genomic targeting
    • Chiang, S.L. and Rubin, E.J. (2002) Construction of a mariner-based transposon for epitope-tagging and genomic targeting. Gene, 296, 179-185.
    • (2002) Gene , vol.296 , pp. 179-185
    • Chiang, S.L.1    Rubin, E.J.2
  • 45
    • 0031567127 scopus 로고    scopus 로고
    • A survey of polypeptide deformylase function throughout the eubacterial lineage
    • Mazel, D., Coic, E., Blanchard, S., Saurin, W. and Marliere, P. (1997) A survey of polypeptide deformylase function throughout the eubacterial lineage. J. Mol. Biol., 266, 939-949.
    • (1997) J. Mol. Biol. , vol.266 , pp. 939-949
    • Mazel, D.1    Coic, E.2    Blanchard, S.3    Saurin, W.4    Marliere, P.5
  • 46
    • 78649653296 scopus 로고    scopus 로고
    • Silent mischief: Bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery
    • Ferrieres, L., Hemery, G., Nham, T., Guerout, A.M., Mazel, D., Beloin, C. and Ghigo, J.M. (2010) Silent mischief: bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery. J. Bacteriol., 192, 6418-6427.
    • (2010) J. Bacteriol. , vol.192 , pp. 6418-6427
    • Ferrieres, L.1    Hemery, G.2    Nham, T.3    Guerout, A.M.4    Mazel, D.5    Beloin, C.6    Ghigo, J.M.7
  • 47
    • 41949084372 scopus 로고    scopus 로고
    • RuvA Mutants that resolve Holliday junctions but do not reverse replication forks
    • Baharoglu, Z., Bradley, A.S., Le Masson, M., Tsaneva, I. and Michel, B. (2008) ruvA Mutants that resolve Holliday junctions but do not reverse replication forks. PLoS Genet., 4, e1000012.
    • (2008) PLoS Genet. , vol.4
    • Baharoglu, Z.1    Bradley, A.S.2    Le Masson, M.3    Tsaneva, I.4    Michel, B.5
  • 48
    • 0028969976 scopus 로고
    • Structure and function of transcription-repair coupling factor. I. Structural domains and binding properties
    • Selby, C.P. and Sancar, A. (1995) Structure and function of transcription-repair coupling factor. I. Structural domains and binding properties. J. Biol. Chem., 270, 4882-4889.
    • (1995) J. Biol. Chem. , vol.270 , pp. 4882-4889
    • Selby, C.P.1    Sancar, A.2
  • 51
    • 0034671841 scopus 로고    scopus 로고
    • GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming
    • Toulme, F., Mosrin-Huaman, C., Sparkowski, J., Das, A., Leng, M. and Rahmouni, A.R. (2000) GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming. EMBO J., 19, 6853-6859.
    • (2000) EMBO J. , vol.19 , pp. 6853-6859
    • Toulme, F.1    Mosrin-Huaman, C.2    Sparkowski, J.3    Das, A.4    Leng, M.5    Rahmouni, A.R.6
  • 52
    • 0021092906 scopus 로고
    • The origin of replication, oriC, and the dnaA protein are dispensable in stable DNA replication (sdrA) mutants of Escherichia coli K-12
    • Kogoma, T. and von Meyenburg, K. (1983) The origin of replication, oriC, and the dnaA protein are dispensable in stable DNA replication (sdrA) mutants of Escherichia coli K-12. EMBO J., 2, 463-468.
    • (1983) EMBO J. , vol.2 , pp. 463-468
    • Kogoma, T.1    Von Meyenburg, K.2
  • 53
    • 0027381598 scopus 로고
    • DNA-polymerase-I and the bypassing of reca dependence of constitutive stable DNA-replication in Escherichia-Coli Rnha mutants
    • Cao, Y., Rowland, R.R. and Kogoma, T. (1993) DNA-polymerase-I and the bypassing of reca dependence of constitutive stable DNA-replication in Escherichia-Coli Rnha mutants. J. Bacteriol., 175, 7247-7253.
    • (1993) J. Bacteriol. , vol.175 , pp. 7247-7253
    • Cao, Y.1    Rowland, R.R.2    Kogoma, T.3
  • 54
    • 84861352747 scopus 로고    scopus 로고
    • Mfd is required for rapid recovery of transcription following UV-induced DNA damage but not oxidative DNA damage in Escherichia coli
    • Schalow, B.J., Courcelle, C.T. and Courcelle, J. (2012) Mfd is required for rapid recovery of transcription following UV-induced DNA damage but not oxidative DNA damage in Escherichia coli. J. Bacteriol., 194, 2637-2645.
    • (2012) J. Bacteriol. , vol.194 , pp. 2637-2645
    • Schalow, B.J.1    Courcelle, C.T.2    Courcelle, J.3
  • 55
    • 20644443705 scopus 로고    scopus 로고
    • Cisplatin induces DNA double-strand break formation in Escherichia coli dam mutants
    • Nowosielska, A. and Marinus, M.G. (2005) Cisplatin induces DNA double-strand break formation in Escherichia coli dam mutants. DNA Repair, 4, 773-781.
    • (2005) DNA Repair , vol.4 , pp. 773-781
    • Nowosielska, A.1    Marinus, M.G.2
  • 56
    • 0030034077 scopus 로고    scopus 로고
    • Products of DNA mismatch repair genes mutS and mutL are required for transcription-coupled nucleotide-excision repair of the lactose operon in Escherichia coli
    • Mellon, I. and Champe, G.N. (1996) Products of DNA mismatch repair genes mutS and mutL are required for transcription-coupled nucleotide-excision repair of the lactose operon in Escherichia coli. Proc. Natl Acad. Sci. USA, 93, 1292-1297.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 1292-1297
    • Mellon, I.1    Champe, G.N.2
  • 57
    • 33751370456 scopus 로고    scopus 로고
    • Hypermutagenesis in mutA cells is mediated by mistranslational corruption of polymerase, and is accompanied by replication fork collapse
    • Al Mamun, A.A., Gautam, S. and Humayun, M.Z. (2006) Hypermutagenesis in mutA cells is mediated by mistranslational corruption of polymerase, and is accompanied by replication fork collapse. Mol. Microbiol., 62, 1752-1763.
    • (2006) Mol. Microbiol. , vol.62 , pp. 1752-1763
    • Al Mamun, A.A.1    Gautam, S.2    Humayun, M.Z.3
  • 58
    • 75749150810 scopus 로고    scopus 로고
    • Direct restart of a replication fork stalled by a head-on RNA polymerase
    • Pomerantz, R.T. and O'Donnell, M. (2010) Direct restart of a replication fork stalled by a head-on RNA polymerase. Science, 327, 590-592.
    • (2010) Science , vol.327 , pp. 590-592
    • Pomerantz, R.T.1    O'Donnell, M.2
  • 59
    • 77952564842 scopus 로고    scopus 로고
    • Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions
    • Amouroux, R., Campalans, A., Epe, B. and Radicella, J.P. (2010) Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions. Nucleic Acids Res., 38, 2878-2890.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2878-2890
    • Amouroux, R.1    Campalans, A.2    Epe, B.3    Radicella, J.P.4
  • 60
    • 1842685197 scopus 로고    scopus 로고
    • Effect of 8-oxoguanine on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II
    • Tornaletti, S., Maeda, L.S., Kolodner, R.D. and Hanawalt, P.C. (2004) Effect of 8-oxoguanine on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II. DNA Repair, 3, 483-494.
    • (2004) DNA Repair , vol.3 , pp. 483-494
    • Tornaletti, S.1    Maeda, L.S.2    Kolodner, R.D.3    Hanawalt, P.C.4
  • 61
    • 0037415719 scopus 로고    scopus 로고
    • A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins
    • Mahdi, A.A., Briggs, G.S., Sharples, G.J., Wen, Q. and Lloyd, R.G. (2003) A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins. EMBO J., 22, 724-734.
    • (2003) EMBO J. , vol.22 , pp. 724-734
    • Mahdi, A.A.1    Briggs, G.S.2    Sharples, G.J.3    Wen, Q.4    Lloyd, R.G.5
  • 62
    • 0025610725 scopus 로고
    • Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro
    • Selby, C.P. and Sancar, A. (1990) Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro. J. Biol. Chem., 265, 21330-21336.
    • (1990) J. Biol. Chem. , vol.265 , pp. 21330-21336
    • Selby, C.P.1    Sancar, A.2
  • 63
    • 0027165306 scopus 로고
    • Effects of abasic sites and DNA single-strand breaks on prokaryotic RNA polymerases
    • Zhou, W. and Doetsch, P.W. (1993) Effects of abasic sites and DNA single-strand breaks on prokaryotic RNA polymerases. Proc. Natl Acad. Sci. USA, 90, 6601-6605.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 6601-6605
    • Zhou, W.1    Doetsch, P.W.2
  • 64
    • 0032516880 scopus 로고    scopus 로고
    • Effects of nonbulky DNA base damages on Escherichia coli RNA polymerase-mediated elongation and promoter clearance
    • Viswanathan, A. and Doetsch, P.W. (1998) Effects of nonbulky DNA base damages on Escherichia coli RNA polymerase-mediated elongation and promoter clearance. J. Biol. Chem., 273, 21276-21281.
    • (1998) J. Biol. Chem. , vol.273 , pp. 21276-21281
    • Viswanathan, A.1    Doetsch, P.W.2
  • 65
    • 0029939231 scopus 로고    scopus 로고
    • The Mfd protein of Bacillus subtilis 168 is involved in both transcription-coupled DNA repair and DNA recombination
    • Ayora, S., Rojo, F., Ogasawara, N., Nakai, S. and Alonso, J.C. (1996) The Mfd protein of Bacillus subtilis 168 is involved in both transcription-coupled DNA repair and DNA recombination. J. Mol. Biol., 256, 301-318.
    • (1996) J. Mol. Biol. , vol.256 , pp. 301-318
    • Ayora, S.1    Rojo, F.2    Ogasawara, N.3    Nakai, S.4    Alonso, J.C.5
  • 67
    • 46449110879 scopus 로고    scopus 로고
    • Key role of Mfd in the development of fluoroquinolone resistance in Campylobacter jejuni
    • Han, J., Sahin, O., Barton, Y.W. and Zhang, Q. (2008) Key role of Mfd in the development of fluoroquinolone resistance in Campylobacter jejuni. PLoS Pathog., 4, e1000083.
    • (2008) PLoS Pathog. , vol.4
    • Han, J.1    Sahin, O.2    Barton, Y.W.3    Zhang, Q.4
  • 70
    • 0028275075 scopus 로고
    • Mutational analysis of ERCC3 which is involved in DNA repair and transcription initiation: Identification of domains essential for the DNA repair function
    • Ma, L., Westbroek, A., Jochemsen, A.G., Weeda, G., Bosch, A., Bootsma, D., Hoeijmakers, J.H. and van der Eb, A.J. (1994) Mutational analysis of ERCC3, which is involved in DNA repair and transcription initiation: identification of domains essential for the DNA repair function. Mol. Cell Biol., 14, 4126-4134.
    • (1994) Mol. Cell Biol. , vol.14 , pp. 4126-4134
    • Ma, L.1    Westbroek, A.2    Jochemsen, A.G.3    Weeda, G.4    Bosch, A.5    Bootsma, D.6    Hoeijmakers, J.H.7    Van Der Eb, A.J.8
  • 71
    • 0028232284 scopus 로고
    • RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription
    • Guzder, S.N., Sung, P., Bailly, V., Prakash, L. and Prakash, S. (1994) RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription. Nature, 369, 578-581.
    • (1994) Nature , vol.369 , pp. 578-581
    • Guzder, S.N.1    Sung, P.2    Bailly, V.3    Prakash, L.4    Prakash, S.5
  • 73
    • 30944453283 scopus 로고    scopus 로고
    • Characterization of ERCC3 mutations in the Chinese hamster ovary 27-1, UV24 and MMC-2 cell lines
    • Hall, H., Gursky, J., Nicodemou, A., Rybanska, I., Kimlickova, E. and Pirsel, M. (2006) Characterization of ERCC3 mutations in the Chinese hamster ovary 27-1, UV24 and MMC-2 cell lines. Mutat. Res., 593, 177-186.
    • (2006) Mutat. Res. , vol.593 , pp. 177-186
    • Hall, H.1    Gursky, J.2    Nicodemou, A.3    Rybanska, I.4    Kimlickova, E.5    Pirsel, M.6
  • 74
    • 77951589688 scopus 로고    scopus 로고
    • Cooperation between translating ribosomes and RNA polymerase in transcription elongation
    • Proshkin, S., Rahmouni, A.R., Mironov, A. and Nudler, E. (2010) Cooperation between translating ribosomes and RNA polymerase in transcription elongation. Science, 328, 504-508.
    • (2010) Science , vol.328 , pp. 504-508
    • Proshkin, S.1    Rahmouni, A.R.2    Mironov, A.3    Nudler, E.4
  • 76
    • 77956269639 scopus 로고    scopus 로고
    • Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans
    • Krisko, A. and Radman, M. (2010) Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans. Proc. Natl Acad. Sci. USA, 107, 14373-14377.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 14373-14377
    • Krisko, A.1    Radman, M.2
  • 77
    • 34548213103 scopus 로고    scopus 로고
    • A common mechanism of cellular death induced by bactericidal antibiotics
    • Kohanski, M.A., Dwyer, D.J., Hayete, B., Lawrence, C.A. and Collins, J.J. (2007) A common mechanism of cellular death induced by bactericidal antibiotics. Cell, 130, 797-810.
    • (2007) Cell , vol.130 , pp. 797-810
    • Kohanski, M.A.1    Dwyer, D.J.2    Hayete, B.3    Lawrence, C.A.4    Collins, J.J.5
  • 78
    • 77952884274 scopus 로고    scopus 로고
    • How antibiotics kill bacteria: From targets to networks
    • Kohanski, M.A., Dwyer, D.J. and Collins, J.J. (2010) How antibiotics kill bacteria: from targets to networks. Nat. Rev. Microbiol., 8, 423-435.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 423-435
    • Kohanski, M.A.1    Dwyer, D.J.2    Collins, J.J.3
  • 79
    • 84874720377 scopus 로고    scopus 로고
    • Killing by bactericidal antibiotics does not depend on reactive oxygen species
    • Keren, I., Wu, Y., Inocencio, J., Mulcahy, L.R. and Lewis, K. (2013) Killing by bactericidal antibiotics does not depend on reactive oxygen species. Science, 339, 1213-1216.
    • (2013) Science , vol.339 , pp. 1213-1216
    • Keren, I.1    Wu, Y.2    Inocencio, J.3    Mulcahy, L.R.4    Lewis, K.5
  • 80
    • 84874695302 scopus 로고    scopus 로고
    • Cell death from antibiotics without the involvement of reactive oxygen species
    • Liu, Y. and Imlay, J.A. (2013) Cell death from antibiotics without the involvement of reactive oxygen species. Science, 339, 1210-1213.
    • (2013) Science , vol.339 , pp. 1210-1213
    • Liu, Y.1    Imlay, J.A.2
  • 83
    • 33646575898 scopus 로고    scopus 로고
    • Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level
    • Beyhan, S., Tischler, A.D., Camilli, A. and Yildiz, F.H. (2006) Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level. J. Bacteriol., 188, 3600-3613.
    • (2006) J. Bacteriol. , vol.188 , pp. 3600-3613
    • Beyhan, S.1    Tischler, A.D.2    Camilli, A.3    Yildiz, F.H.4
  • 84
    • 35348862343 scopus 로고    scopus 로고
    • Yeast aconitase binds and provides metabolically coupled protection to mitochondrial DNA
    • Chen, X.J., Wang, X. and Butow, R.A. (2007) Yeast aconitase binds and provides metabolically coupled protection to mitochondrial DNA. Proc. Natl Acad. Sci. USA, 104, 13738-13743.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 13738-13743
    • Chen, X.J.1    Wang, X.2    Butow, R.A.3
  • 85
    • 0242290210 scopus 로고    scopus 로고
    • YodA from Escherichia coli is a metal-binding lipocalin-like protein
    • David, G., Blondeau, K., Schiltz, M., Penel, S. and Lewit-Bentley, A. (2003) YodA from Escherichia coli is a metal-binding, lipocalin-like protein. J. Biol. Chem., 278, 43728-43735.
    • (2003) J. Biol. Chem. , vol.278 , pp. 43728-43735
    • David, G.1    Blondeau, K.2    Schiltz, M.3    Penel, S.4    Lewit-Bentley, A.5
  • 86
    • 38349117475 scopus 로고    scopus 로고
    • Diversity and distribution of hemerythrin-like proteins in prokaryotes
    • French, C.E., Bell, J.M. and Ward, F.B. (2008) Diversity and distribution of hemerythrin-like proteins in prokaryotes. FEMS Microbiol. Lett., 279, 131-145.
    • (2008) FEMS Microbiol. Lett. , vol.279 , pp. 131-145
    • French, C.E.1    Bell, J.M.2    Ward, F.B.3
  • 87
    • 0033909896 scopus 로고    scopus 로고
    • Novel effects of a transposon insertion in the Vibrio fischeri glnD gene: Defects in iron uptake and symbiotic persistence in addition to nitrogen utilization
    • Graf, J. and Ruby, E.G. (2000) Novel effects of a transposon insertion in the Vibrio fischeri glnD gene: defects in iron uptake and symbiotic persistence in addition to nitrogen utilization. Mol. Microbiol., 37, 168-179.
    • (2000) Mol. Microbiol. , vol.37 , pp. 168-179
    • Graf, J.1    Ruby, E.G.2
  • 88
    • 1642325936 scopus 로고    scopus 로고
    • Evolutionary history and higher order classification of AAA+ ATPases
    • Iyer, L.M., Leipe, D.D., Koonin, E.V. and Aravind, L. (2004) Evolutionary history and higher order classification of AAA+ ATPases. J. Struct. Biol., 146, 11-31.
    • (2004) J. Struct. Biol. , vol.146 , pp. 11-31
    • Iyer, L.M.1    Leipe, D.D.2    Koonin, E.V.3    Aravind, L.4
  • 89
    • 79959912261 scopus 로고    scopus 로고
    • Structure of the PilM-PilN inner membrane type IV pilus biogenesis complex from Thermus thermophilus
    • Karuppiah, V. and Derrick, J.P. (2011) Structure of the PilM-PilN inner membrane type IV pilus biogenesis complex from Thermus thermophilus. J. Biol. Chem., 286, 24434-24442.
    • (2011) J. Biol. Chem. , vol.286 , pp. 24434-24442
    • Karuppiah, V.1    Derrick, J.P.2
  • 90
    • 40449091818 scopus 로고    scopus 로고
    • The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance
    • Laubacher, M.E. and Ades, S.E. (2008) The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance. J. Bacteriol., 190, 2065-2074.
    • (2008) J. Bacteriol. , vol.190 , pp. 2065-2074
    • Laubacher, M.E.1    Ades, S.E.2
  • 91
    • 33645296297 scopus 로고    scopus 로고
    • Cyclic-diGMP signal transduction systems in Vibrio cholerae: Modulation of rugosity and biofilm formation
    • Lim, B., Beyhan, S., Meir, J. and Yildiz, F.H. (2006) Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation. Mol. Microbiol., 60, 331-348.
    • (2006) Mol. Microbiol. , vol.60 , pp. 331-348
    • Lim, B.1    Beyhan, S.2    Meir, J.3    Yildiz, F.H.4
  • 92
    • 33846631847 scopus 로고    scopus 로고
    • Regulation of Vibrio polysaccharide synthesis and virulence factor production by CdgC, a GGDEF-EAL domain protein, in Vibrio cholerae
    • Lim, B., Beyhan, S. and Yildiz, F.H. (2007) Regulation of Vibrio polysaccharide synthesis and virulence factor production by CdgC, a GGDEF-EAL domain protein, in Vibrio cholerae. J. Bacteriol., 189, 717-729.
    • (2007) J. Bacteriol. , vol.189 , pp. 717-729
    • Lim, B.1    Beyhan, S.2    Yildiz, F.H.3
  • 93
    • 84864912081 scopus 로고    scopus 로고
    • Transcriptomic response of Enterococcus faecalis to iron excess
    • Lopez, G., Latorre, M., Reyes-Jara, A., Cambiazo, V. and Gonzalez, M. (2012) Transcriptomic response of Enterococcus faecalis to iron excess. Biometals, 25, 737-747.
    • (2012) Biometals , vol.25 , pp. 737-747
    • Lopez, G.1    Latorre, M.2    Reyes-Jara, A.3    Cambiazo, V.4    Gonzalez, M.5
  • 94
    • 27744589294 scopus 로고    scopus 로고
    • A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. Coli
    • Mika, F. and Hengge, R. (2005) A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coli. Genes Dev., 19, 2770-2781.
    • (2005) Genes Dev. , vol.19 , pp. 2770-2781
    • Mika, F.1    Hengge, R.2
  • 95
    • 51149098349 scopus 로고    scopus 로고
    • Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli
    • Pesavento, C., Becker, G., Sommerfeldt, N., Possling, A., Tschowri, N., Mehlis, A. and Hengge, R. (2008) Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli. Genes Dev., 22, 2434-2446.
    • (2008) Genes Dev. , vol.22 , pp. 2434-2446
    • Pesavento, C.1    Becker, G.2    Sommerfeldt, N.3    Possling, A.4    Tschowri, N.5    Mehlis, A.6    Hengge, R.7
  • 96
    • 3142764685 scopus 로고    scopus 로고
    • The Mycobacterium tuberculosis cysD and cysNC genes form a stress-induced operon that encodes a tri-functional sulfate-activating complex
    • Pinto, R., Tang, Q.X., Britton, W.J., Leyh, T.S. and Triccas, J.A. (2004) The Mycobacterium tuberculosis cysD and cysNC genes form a stress-induced operon that encodes a tri-functional sulfate-activating complex. Microbiology, 150, 1681-1686.
    • (2004) Microbiology , vol.150 , pp. 1681-1686
    • Pinto, R.1    Tang, Q.X.2    Britton, W.J.3    Leyh, T.S.4    Triccas, J.A.5
  • 97
    • 0036952408 scopus 로고    scopus 로고
    • Regulation of yodA encoding a novel cadmium-induced protein in Escherichia coli
    • Puskarova, A., Ferianc, P., Kormanec, J., Homerova, D., Farewell, A. and Nystrom, T. (2002) Regulation of yodA encoding a novel cadmium-induced protein in Escherichia coli. Microbiology, 148, 3801-3811.
    • (2002) Microbiology , vol.148 , pp. 3801-3811
    • Puskarova, A.1    Ferianc, P.2    Kormanec, J.3    Homerova, D.4    Farewell, A.5    Nystrom, T.6
  • 98
    • 4644277087 scopus 로고    scopus 로고
    • Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli
    • Ren, D., Bedzyk, L.A., Ye, R.W., Thomas, S.M. and Wood, T.K. (2004) Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli. Appl. Environ. Microbiol., 70, 2038-2043.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2038-2043
    • Ren, D.1    Bedzyk, L.A.2    Ye, R.W.3    Thomas, S.M.4    Wood, T.K.5
  • 99
    • 3242884444 scopus 로고    scopus 로고
    • Molecular analysis of rugosity in a Vibrio cholerae O1 El Tor phase variant
    • Yildiz, F.H., Liu, X.S., Heydorn, A. and Schoolnik, G.K. (2004) Molecular analysis of rugosity in a Vibrio cholerae O1 El Tor phase variant. Mol. Microbiol., 53, 497-515.
    • (2004) Mol. Microbiol. , vol.53 , pp. 497-515
    • Yildiz, F.H.1    Liu, X.S.2    Heydorn, A.3    Schoolnik, G.K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.