The escherichia coli sos gene dinf protects against oxidative stress and bile salts

PLoS ONE

Volumn 7, Issue 4, 2012, Pages

  Rodríguez Beltrán, Jerónimo ^a   Rodríguez Rojas, Alexandro ^a   Guelfo, Javier R ^a   Couce, Alejandro ^a   Blázquez, Jesús ^a  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BILE SALT; CEFTAZIDIME; CIPROFLOXACIN; ETHIDIUM BROMIDE; GENTAMICIN; HYDROGEN PEROXIDE; KANAMYCIN; MITOMYCIN C; NORFLOXACIN; OFLOXACIN; REACTIVE OXYGEN METABOLITE; STREPTOMYCIN; ANTIPORTER; BILE ACID; DINF PROTEIN, E COLI; ESCHERICHIA COLI PROTEIN; INORGANIC PYROPHOSPHATASE; MDTK PROTEIN, E COLI; MUTT PROTEIN, E COLI;

ARTICLE; BACTERIAL GENE; BACTERIAL METABOLISM; BACTERIAL STRAIN; CONTROLLED STUDY; DINF GENE; DNA DAMAGE; DNA REPAIR; ESCHERICHIA COLI; GENE ACTIVATION; GENE ACTIVITY; GENE EXPRESSION PROFILING; GENE FUNCTION; NONHUMAN; OXIDATIVE STRESS; PROTEIN CARBONYLATION; AMINO ACID SEQUENCE; DRUG ANTAGONISM; DRUG EFFECT; GENETICS; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

AMINO ACID SEQUENCE; ANTIPORTERS; BILE ACIDS AND SALTS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HYDROGEN PEROXIDE; MOLECULAR SEQUENCE DATA; OXIDATIVE STRESS; PROTEIN CARBONYLATION; PYROPHOSPHATASES; SEQUENCE ALIGNMENT; SOS RESPONSE (GENETICS);

EID: 84859814431     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0034791     Document Type: Article

References (42)

1. Friedberg E, Walker G, Seide W, Wood R, Schultz R, et al. (2006) DNA Repair and Mutagenesis Washington DC, USA American Society of Microbiology.
2. Courcelle J, Khodursky A, Peter B, Brown PO, Hanawalt PC, (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics 158: 41-64.
3. Fernandez De Henestrosa AR, Ogi T, Aoyagi S, Chafin D, Hayes JJ, et al. (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol Microbiol 35: 1560-1572.
4. Camas FM, Blazquez J, Poyatos JF, (2006) Autogenous and nonautogenous control of response in a genetic network. Proc Natl Acad Sci U S A 103: 12718-12723.
5. Kenyon CJ, Walker GC, (1980) DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. Proc Natl Acad Sci U S A 77: 2819-2823.
6. Brown MH, Paulsen IT, Skurray RA, (1999) The multidrug efflux protein NorM is a prototype of a new family of transporters. Mol Microbiol 31: 394-395.
7. Morita Y, Kodama K, Shiota S, Mine T, Kataoka A, et al. (1998) NorM, a putative multidrug efflux protein, of Vibrio parahaemolyticus and its homolog in Escherichia coli. Antimicrob Agents Chemother 42: 1778-1782.
8. Guelfo JR, Rodríguez-Rojas A, Matic I, Blázquez J, (2010) A MATE-family efflux pump rescues the Escherichia coli 8-oxoguanine-repair-deficient mutator phenotype and protects from H2O2 killing. Plos Genetics 6.
9. Prieto AI, Ramos-Morales F, Casadesus J, (2006) Repair of DNA damage induced by bile salts in Salmonella enterica. Genetics 174: 575-584.
10. Cupples CG, Cabrera M, Cruz C, Miller JH, (1990) A set of lacZ mutations in Escherichia coli that allow rapid detection of specific frameshift mutations. Genetics 125: 275-280.
11. Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006 0008.
12. Miller JH, (1992) A short course in bacterial genetics: a laboratory manual and handbook for Escherichia coli related bacteria New York Cols Spring Harbor Laboratory Press v. 1 p.
13. Ronen M, Rosenberg R, Shraiman BI, Alon U, (2002) Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proc Natl Acad Sci U S A 99: 10555-10560.
14. Saka K, Tadenuma M, Nakade S, Tanaka N, Sugawara H, et al. (2005) A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies. DNA Res 12: 63-68.
15. Elez M, Radman M, Matic I, (2007) The frequency and structure of recombinant products is determined by the cellular level of MutL. Proc Natl Acad Sci U S A 104: 8935-8940.
16. Sarkar S, Ma WT, Sandri GH, (1992) On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 85: 173-179.
17. Hall BM, Ma CX, Liang P, Singh KK, (2009) Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25: 1564-1565.
18. Couce A, Blazquez J, (2011) Estimating mutation rates in low-replication experiments. Mutat Res In Press.
19. Lenski RE, (1991) Quantifying fitness and gene stability in microorganisms. Biotechnology 15: 173-192.
20. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
21. Viveiros M, Dupont M, Rodrigues L, Couto I, Davin-Regli A, et al. (2007) Antibiotic stress, genetic response and altered permeability of E. coli. PLoS One 2: e365.
22. Michaels ML, Miller JH, (1992) The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine). J Bacteriol 174: 6321-6325.
23. Alhama J, Ruiz-Laguna J, Rodriguez-Ariza A, Toribio F, Lopez-Barea J, et al. (1998) Formation of 8-oxoguanine in cellular DNA of Escherichia coli strains defective in different antioxidant defences. Mutagenesis 13: 589-594.
24. Sanders LH, Rockel A, Lu H, Wozniak DJ, Sutton MD, (2006) Role of Pseudomonas aeruginosa dinB-encoded DNA polymerase IV in mutagenesis. J Bacteriol 188: 8573-8585.
25. Pertea M, Ayanbule K, Smedinghoff M, Salzberg SL, (2009) OperonDB: a comprehensive database of predicted operons in microbial genomes. Nucleic Acids Res 37: D479-482.
26. Miyamae S, Ueda O, Yoshimura F, Hwang J, Tanaka Y, et al. (2001) A MATE family multidrug efflux transporter pumps out fluoroquinolones in Bacteroides thetaiotaomicron. Antimicrob Agents Chemother 45: 3341-3346.
27. Brown DG, Swanson JK, Allen C, (2007) Two host-induced Ralstonia solanacearum genes, acrA and dinF, encode multidrug efflux pumps and contribute to bacterial wilt virulence. Appl Environ Microbiol 73: 2777-2786.
28. Long F, Rouquette-Loughlin C, Shafer WM, Yu EW, (2008) Functional cloning and characterization of the multidrug efflux pumps NorM from Neisseria gonorrhoeae and YdhE from Escherichia coli. Antimicrob Agents Chemother 52: 3052-3060.
29. Miki T, Ebina Y, Kishi F, Nakazawa A, (1981) Organization of the lexA gene of Escherichia coli and nucleotide sequence of the regulatory region. Nucleic Acids Res 9: 529-543.
30. Goerlich O, Quillardet P, Hofnung M, (1989) Induction of the SOS response by hydrogen peroxide in various Escherichia coli mutants with altered protection against oxidative DNA damage. J Bacteriol 171: 6141-6147.
31. Imlay JA, Linn S, (1987) Mutagenesis and stress responses induced in Escherichia coli by hydrogen peroxide. J Bacteriol 169: 2967-2976.
32. Modrich P, Lahue R, (1996) Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu Rev Biochem 65: 101-133.
33. Wang D, Kreutzer DA, Essigmann JM, (1998) Mutagenicity and repair of oxidative DNA damage: insights from studies using defined lesions. Mutat Res 400: 99-115.
34. Shibutani S, Takeshita M, Grollman AP, (1991) Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature 349: 431-434.
35. Moriya M, Ou C, Bodepudi V, Johnson F, Takeshita M, et al. (1991) Site-specific mutagenesis using a gapped duplex vector: a study of translesion synthesis past 8-oxodeoxyguanosine in E. coli. Mutat Res 254: 281-288.
36. Sanders LH, Sudhakaran J, Sutton MD, (2009) The GO system prevents ROS-induced mutagenesis and killing in Pseudomonas aeruginosa. FEMS Microbiol Lett 294: 89-96.
37. Taddei F, Hayakawa H, Bouton M, Cirinesi A, Matic I, et al. (1997) Counteraction by MutT protein of transcriptional errors caused by oxidative damage. Science 278: 128-130.
38. Putman M, van Veen HW, Konings WN, (2000) Molecular properties of bacterial multidrug transporters. Microbiol Mol Biol Rev 64: 672-693.
39. Li XZ, Nikaido H, (2009) Efflux-mediated drug resistance in bacteria: an update. Drugs 69: 1555-1623.
40. Gunn JS, (2000) Mechanisms of bacterial resistance and response to bile. Microbes Infect 2: 907-913.
41. Abeysuriya V, Deen KI, Wijesuriya T, Salgado SS, (2008) Microbiology of gallbladder bile in uncomplicated symptomatic cholelithiasis. Hepatobiliary Pancreat Dis Int 7: 633-637.
42. Julka K, Ko CW, (2010) Infectious diseases and the gallbladder. Infect Dis Clin North Am 24: 885-898, vii-viii.