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Volumn 150, Issue 11, 2004, Pages 3783-3795

Reconstruction of the evolutionary history of the LexA-binding sequence

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; LEXA PROTEIN; REPRESSOR PROTEIN; SOS PROTEIN;

EID: 9144266449     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.27315-0     Document Type: Article
Times cited : (36)

References (40)
  • 1
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. (1976). A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 2
    • 0024121565 scopus 로고
    • UmuD mutagenesis protein of Escherichia coli: Overproduction, purification and cleavage by RecA
    • Burckhardt, S. E., Woodgate, R., Scheuermann, H. R. & Echols, H. (1988). UmuD mutagenesis protein of Escherichia coli: overproduction, purification and cleavage by RecA. Proc Natl Acad Sci U S A 85, 1811-1815.
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 1811-1815
    • Burckhardt, S.E.1    Woodgate, R.2    Scheuermann, H.R.3    Echols, H.4
  • 3
    • 0041663983 scopus 로고    scopus 로고
    • LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus
    • Campoy, S., Fontes, M., Padmanabhan, S., Cortes, P., Llagostera, M. & Barbe, J. (2003). LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus. Mol Microbiol 49, 769-781.
    • (2003) Mol. Microbiol. , vol.49 , pp. 769-781
    • Campoy, S.1    Fontes, M.2    Padmanabhan, S.3    Cortes, P.4    Llagostera, M.5    Barbe, J.6
  • 5
    • 0035023305 scopus 로고    scopus 로고
    • Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli
    • Courcelle, J., Khodursky, A., Peter, B., Brown, P. O. & Hanawalt, P. C. (2001). Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics 158, 41-64.
    • (2001) Genetics , vol.158 , pp. 41-64
    • Courcelle, J.1    Khodursky, A.2    Peter, B.3    Brown, P.O.4    Hanawalt, P.C.5
  • 6
    • 0036267340 scopus 로고    scopus 로고
    • Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis
    • Davis, E. O., Dullaghan, E. M. & Rand, L. (2002). Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis. J Bacteriol 184, 3287-3295.
    • (2002) J. Bacteriol. , vol.184 , pp. 3287-3295
    • Davis, E.O.1    Dullaghan, E.M.2    Rand, L.3
  • 7
    • 0029610851 scopus 로고
    • The RecA protein as a model molecule for molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S rRNAs from the same species
    • Eisen, J. A. (1995). The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J Mol Evol 41, 1105-1123.
    • (1995) J. Mol. Evol. , vol.41 , pp. 1105-1123
    • Eisen, J.A.1
  • 8
    • 0344464768 scopus 로고    scopus 로고
    • In silico analysis reveals substantial variability in the gene contents of the Gamma Proteobacteria LexA-regulon
    • Erill, I., Escribano, M., Campoy, S. & Barbé, J. (2003). In silico analysis reveals substantial variability in the gene contents of the Gamma Proteobacteria LexA-regulon. Bioinformatics 19, 2225-2236.
    • (2003) Bioinformatics , vol.19 , pp. 2225-2236
    • Erill, I.1    Escribano, M.2    Campoy, S.3    Barbé, J.4
  • 9
    • 0000122573 scopus 로고
    • PHYLIP: Phylogeny inference package (version 3.2)
    • Felsenstein, J. (1989). PHYLIP: phylogeny inference package (version 3.2). Cladistics 5, 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 12
    • 0036837797 scopus 로고    scopus 로고
    • A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms
    • Fernández de Henestrosa, A. R., Cuñé, J., Erill, I., Magnuson, J. K. & Barbé, J. (2002). A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms. J Bacteriol 184, 6073-6080.
    • (2002) J. Bacteriol. , vol.184 , pp. 6073-6080
    • Fernández de Henestrosa, A.R.1    Cuñé, J.2    Erill, I.3    Magnuson, J.K.4    Barbé, J.5
  • 14
    • 0028085175 scopus 로고
    • Molecular cloning, expression and characterization of a new endoglucanase gene from Fibrobacter succinogenes S85
    • Forano, E., Broussolle, V., Gaudet, G. & Bryant, J. A. (1994). Molecular cloning, expression and characterization of a new endoglucanase gene from Fibrobacter succinogenes S85. Current Microbiol 28, 7-14.
    • (1994) Current Microbiol. , vol.28 , pp. 7-14
    • Forano, E.1    Broussolle, V.2    Gaudet, G.3    Bryant, J.A.4
  • 16
    • 0034815478 scopus 로고    scopus 로고
    • The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: Evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga-Flavobacterium-Bacteroides division
    • Griffiths, E. & Gupta, R. S. (2001). The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga-Flavobacterium-Bacteroides division. Microbiology 147, 2611-2622.
    • (2001) Microbiology , vol.147 , pp. 2611-2622
    • Griffiths, E.1    Gupta, R.S.2
  • 17
    • 0036597701 scopus 로고    scopus 로고
    • Critical issues in bacterial phylogeny
    • Gupta, R. S. & Griffiths, E. (2002). Critical issues in bacterial phylogeny. Theor Popul Biol 61, 423-434.
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 423-434
    • Gupta, R.S.1    Griffiths, E.2
  • 18
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Higgins, D., Thompson, J., Gibson, T., Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3    Thompson, J.D.4    Higgins, D.G.5    Gibson, T.J.6
  • 20
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 21
    • 0343188817 scopus 로고
    • Autodigestion of lexA and phage lambda repressors
    • Little, J. W. (1984). Autodigestion of lexA and phage lambda repressors. Proc Natl Acad Sci U S A 81, 1375-1379.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 1375-1379
    • Little, J.W.1
  • 22
    • 0025810994 scopus 로고
    • Mechanism of specific LexA cleavage: Autodigestion and the role of RecA coprotease
    • Little, J. W. (1991). Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease. Biochimie 73, 411-422.
    • (1991) Biochimie , vol.73 , pp. 411-422
    • Little, J.W.1
  • 23
    • 0001897446 scopus 로고    scopus 로고
    • Phylogeny of Bacteria beyond the 16S rRNA standard
    • Ludwig, W. & Schleifer, K. H. (1999). Phylogeny of Bacteria beyond the 16S rRNA standard. ASM News 65, 752-757.
    • (1999) ASM News , vol.65 , pp. 752-757
    • Ludwig, W.1    Schleifer, K.H.2
  • 25
    • 0032918722 scopus 로고    scopus 로고
    • A new version of the RDP (Ribosomal Database Project)
    • & 11 other authors
    • Maidak, B. L., Cole, J. R., Parker, C. T., Jr & 11 other authors (1999). A new version of the RDP (Ribosomal Database Project . Nucleic Acids Res 27, 171-173.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 171-173
    • Maidak, B.L.1    Cole, J.R.2    Parker Jr., C.T.3
  • 27
    • 0024121518 scopus 로고
    • RecA-mediated cleavage activates UmuD for mutagenesis: Mechanistic relationship between transcriptional derepression and posttranslational activation
    • Nohmi, T., Battista, J. R., Dodson, L. A. & Walker, G. C. (1988). RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation. Proc Natl Acad Sci U S A 85, 1816-1820.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 1816-1820
    • Nohmi, T.1    Battista, J.R.2    Dodson, L.A.3    Walker, G.C.4
  • 29
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. CABIOS 12, 357-358.
    • (1996) CABIOS , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 30
    • 0034902162 scopus 로고    scopus 로고
    • 2+ transporter in Escherichia coli
    • 2+ transporter in Escherichia coli. J Bacteriol 183, 4806-4813.
    • (2001) J. Bacteriol. , vol.183 , pp. 4806-4813
    • Patzer, S.I.1    Hantke, K.2
  • 31
    • 0036180002 scopus 로고    scopus 로고
    • The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons
    • Rajewsky, N., Socci, N., Zapotocky, M. & Siggia, E. D. (2002). The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons. Genome Res 12, 298-308.
    • (2002) Genome Res. , vol.12 , pp. 298-308
    • Rajewsky, N.1    Socci, N.2    Zapotocky, M.3    Siggia, E.D.4
  • 32
    • 0035910178 scopus 로고    scopus 로고
    • Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria
    • Rodionov, D. A., Mironov, A. A. & Gelfand, M. S. (2001). Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria. FEMS Microbiol Lett 205, 305-314.
    • (2001) FEMS Microbiol. Lett. , vol.205 , pp. 305-314
    • Rodionov, D.A.1    Mironov, A.A.2    Gelfand, M.S.3
  • 35
    • 0025361131 scopus 로고
    • Nature of SOS-inducing signal in Escherichia coli. The involvement of DNA replication
    • Sassanfar, M. & Roberts, J. W. (1990). Nature of SOS-inducing signal in Escherichia coli. The involvement of DNA replication. J Mol Biol 212, 79-96.
    • (1990) J. Mol. Biol. , vol.212 , pp. 79-96
    • Sassanfar, M.1    Roberts, J.W.2
  • 36
    • 0032833682 scopus 로고    scopus 로고
    • Regulation of divergent transcription from the uvrA-ssb promoters, in Sinorhizobium meliloti
    • Tapias, A. & Barbé, J. (1999). Regulation of divergent transcription from the uvrA-ssb promoters, in Sinorhizobium meliloti. Mol Gen Genet 262, 121-130.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 121-130
    • Tapias, A.1    Barbé, J.2
  • 37
    • 0036529547 scopus 로고    scopus 로고
    • Rhodobacter sphaeroides LexA has dual activity: Optimising and repressing recA gene transcription
    • Tapias, A., Fernández, S., Alonso, J. C. & Barbé, J (2002). Rhodobacter sphaeroides LexA has dual activity: optimising and repressing recA gene transcription. Nucleic Acids Res 30, 1539-1546.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1539-1546
    • Tapias, A.1    Fernández, S.2    Alonso, J.C.3    Barbé, J.4
  • 38
    • 0021320685 scopus 로고
    • Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli
    • Walker, G. C. (1984). Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol Rev 48, 60-93.
    • (1984) Microbiol. Rev. , vol.48 , pp. 60-93
    • Walker, G.C.1
  • 40
    • 0021709151 scopus 로고
    • The phylogeny of purple bacteria: The alpha subdivision
    • & 8 other authors
    • Woese, C. R., Stackebrandt, E., Weisburg, W. C. & 8 other authors (1984). The phylogeny of purple bacteria: the alpha subdivision. Syst Appl Microbiol 5, 315-326.
    • (1984) Syst. Appl. Microbiol. , vol.5 , pp. 315-326
    • Woese, C.R.1    Stackebrandt, E.2    Weisburg, W.C.3


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