-
1
-
-
0035997368
-
DNA replication in eukaryotic cells
-
Bell SP, Dutta A: DNA replication in eukaryotic cells. Annu Rev Biochem 2002, 71:333-74.
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 333-374
-
-
Bell, S.P.1
Dutta, A.2
-
5
-
-
0032562610
-
Formation of a preinitiation complex by S-phase cyclin CDK-dependent loading of Cdc45p onto chromatin
-
Zou L, Stillman B: Formation of a preinitiation complex by S-phase cyclin CDK-dependent loading of Cdc45p onto chromatin. Science 1998, 280:593-6.
-
(1998)
Science
, vol.280
, pp. 593-596
-
-
Zou, L.1
Stillman, B.2
-
6
-
-
74749095240
-
Activation of the MCM2-7 helicase by association with Cdc45 and GINS proteins
-
Ilves I, Petojevic T, Pesavento JJ, Botchan MR: Activation of the MCM2-7 helicase by association with Cdc45 and GINS proteins. Mol Cell 2010, 37:247-58.
-
(2010)
Mol Cell
, vol.37
, pp. 247-258
-
-
Ilves, I.1
Petojevic, T.2
Pesavento, J.J.3
Botchan, M.R.4
-
7
-
-
79953769723
-
The structural basis for MCM2-7 helicase activation by GINS and Cdc45
-
Costa A, Ilves I, Tamberg N, Petojevic T, Nogales E, Botchan MR, Berger JM: The structural basis for MCM2-7 helicase activation by GINS and Cdc45. Nat Struct Mol Biol 2011, 18:471-7.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 471-477
-
-
Costa, A.1
Ilves, I.2
Tamberg, N.3
Petojevic, T.4
Nogales, E.5
Botchan, M.R.6
Berger, J.M.7
-
8
-
-
79953220813
-
MCM2-7 form double hexamers at licensed origins in Xenopus egg extract
-
Gambus A, Khoudoli GA, Jones RC, Blow JJ: MCM2-7 form double hexamers at licensed origins in Xenopus egg extract. J Biol Chem 2011, 286:11855-64.
-
(2011)
J Biol Chem
, vol.286
, pp. 11855-11864
-
-
Gambus, A.1
Khoudoli, G.A.2
Jones, R.C.3
Blow, J.J.4
-
9
-
-
0013887376
-
Autoradiography of chromosomal DNA fibers from Chinese hamster cells
-
Huberman JA, Riggs AD: Autoradiography of chromosomal DNA fibers from Chinese hamster cells. Proc Natl Acad Sci USA 1966, 55:599-606.
-
(1966)
Proc Natl Acad Sci USA
, vol.55
, pp. 599-606
-
-
Huberman, J.A.1
Riggs, A.D.2
-
10
-
-
0014413470
-
On the mechanism of DNA replication in mammalian chromosomes
-
Huberman JA, Riggs AD: On the mechanism of DNA replication in mammalian chromosomes. J Mol Biol 1968, 32:327-41.
-
(1968)
J Mol Biol
, vol.32
, pp. 327-341
-
-
Huberman, J.A.1
Riggs, A.D.2
-
11
-
-
0024564516
-
Isolation of human sequences that replicate autonomously in human cells
-
Krysan PJ, Haase SB, Calos MP: Isolation of human sequences that replicate autonomously in human cells. Mol Cell Biol 1989, 9:1026-33.
-
(1989)
Mol Cell Biol
, vol.9
, pp. 1026-1033
-
-
Krysan, P.J.1
Haase, S.B.2
Calos, M.P.3
-
12
-
-
0026016255
-
Autonomous DNA replication in human cells is affected by the size and the source of the DNA
-
Heinzel SS, Krysan PJ, Tran CT, Calos MP: Autonomous DNA replication in human cells is affected by the size and the source of the DNA. Mol Cell Biol 1991, 11:2263-72.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 2263-2272
-
-
Heinzel, S.S.1
Krysan, P.J.2
Tran, C.T.3
Calos, M.P.4
-
13
-
-
0018952783
-
Regulated replication of DNA microinjected into eggs of Xenopus laevis
-
Harland RM, Laskey RA: Regulated replication of DNA microinjected into eggs of Xenopus laevis. Cell 1980, 21:761-71.
-
(1980)
Cell
, vol.21
, pp. 761-771
-
-
Harland, R.M.1
Laskey, R.A.2
-
14
-
-
0019954828
-
An amplified chromosomal sequence that includes the gene for dihydrofolate reductase initiates replication within specific restriction fragments
-
Heintz NH, Hamlin JL: An amplified chromosomal sequence that includes the gene for dihydrofolate reductase initiates replication within specific restriction fragments. Proc Natl Acad Sci USA 1982, 79:4083-7.
-
(1982)
Proc Natl Acad Sci USA
, vol.79
, pp. 4083-4087
-
-
Heintz, N.H.1
Hamlin, J.L.2
-
15
-
-
0023031898
-
Isolation of the origin of replication associated with the amplified Chinese hamster dihydrofolate reductase domain
-
Burhans WC, Selegue JE, Heintz NH: Isolation of the origin of replication associated with the amplified Chinese hamster dihydrofolate reductase domain. Proc Natl Acad Sci USA 1986, 83:7790-4.
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 7790-7794
-
-
Burhans, W.C.1
Selegue, J.E.2
Heintz, N.H.3
-
16
-
-
0027370672
-
Chromosomal replication initiates and terminates at random sequences but at regular intervals in the ribosomal DNA of Xenopus early embryos
-
Hyrien O, Méchali M: Chromosomal replication initiates and terminates at random sequences but at regular intervals in the ribosomal DNA of Xenopus early embryos. EMBO J 1993, 12:4511-20.
-
(1993)
EMBO J
, vol.12
, pp. 4511-4520
-
-
Hyrien, O.1
Méchali, M.2
-
17
-
-
0035825156
-
Replication origins in Xenopus egg extract Are 5-15 kilobases apart and are activated in clusters that fire at different times
-
Blow JJ, Gillespie PJ, Francis D, Jackson DA: Replication origins in Xenopus egg extract Are 5-15 kilobases apart and are activated in clusters that fire at different times. J Cell Biol 2001, 152:15-25.
-
(2001)
J Cell Biol
, vol.152
, pp. 15-25
-
-
Blow, J.J.1
Gillespie, P.J.2
Francis, D.3
Jackson, D.A.4
-
18
-
-
0028829358
-
Transition in specification of embryonic metazoan DNA replication origins
-
Hyrien O, Maric C, Méchali M: Transition in specification of embryonic metazoan DNA replication origins. Science 1995, 270:994-7.
-
(1995)
Science
, vol.270
, pp. 994-997
-
-
Hyrien, O.1
Maric, C.2
Méchali, M.3
-
19
-
-
0031278994
-
The search for origins of DNA replication
-
DePamphilis ML: The search for origins of DNA replication. Methods 1997, 13:211-9.
-
(1997)
Methods
, vol.13
, pp. 211-219
-
-
DePamphilis, M.L.1
-
20
-
-
0025178839
-
Mapping an origin of DNA replication at a single-copy locus in exponentially proliferating mammalian cells
-
Vassilev LT, Burhans WC, DePamphilis ML: Mapping an origin of DNA replication at a single-copy locus in exponentially proliferating mammalian cells. Mol Cell Biol 1990, 10:4685-9.
-
(1990)
Mol Cell Biol
, vol.10
, pp. 4685-4689
-
-
Vassilev, L.T.1
Burhans, W.C.2
DePamphilis, M.L.3
-
21
-
-
0029789679
-
High-resolution mapping of the origin of DNA replication in the hamster dihydrofolate reductase gene domain by competitive PCR
-
Pelizon C, Diviacco S, Falaschi A, Giacca M: High-resolution mapping of the origin of DNA replication in the hamster dihydrofolate reductase gene domain by competitive PCR. Mol Cell Biol 1996, 16:5358-64.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 5358-5364
-
-
Pelizon, C.1
Diviacco, S.2
Falaschi, A.3
Giacca, M.4
-
22
-
-
0031815995
-
Identification of primary initiation sites for DNA replication in the hamster dihydrofolate reductase gene initiation zone
-
Kobayashi T, Rein T, DePamphilis ML: Identification of primary initiation sites for DNA replication in the hamster dihydrofolate reductase gene initiation zone. Mol Cell Biol 1998, 18:3266-77.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 3266-3277
-
-
Kobayashi, T.1
Rein, T.2
DePamphilis, M.L.3
-
23
-
-
0023646792
-
The localization of replication origins on ARS plasmids in S. Cerevisiae
-
Brewer BJ, Fangman WL: The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 1987, 51:463-71.
-
(1987)
Cell
, vol.51
, pp. 463-471
-
-
Brewer, B.J.1
Fangman, W.L.2
-
24
-
-
0023646749
-
The in vivo replication origin of the yeast 2 microns plasmid
-
Huberman JA, Spotila LD, Nawotka KA, el-Assouli SM, Davis LR: The in vivo replication origin of the yeast 2 microns plasmid. Cell 1987, 51:473-81.
-
(1987)
Cell
, vol.51
, pp. 473-481
-
-
Huberman, J.A.1
Spotila, L.D.2
Nawotka, K.A.3
El-Assouli, S.M.4
Davis, L.R.5
-
25
-
-
0023883787
-
Two-dimensional gel electrophoretic method formapping DNA replicons
-
Nawotka KA, Huberman JA: Two-dimensional gel electrophoretic method formapping DNA replicons. Mol Cell Biol 1988, 8:1408-13.
-
(1988)
Mol Cell Biol
, vol.8
, pp. 1408-1413
-
-
Nawotka, K.A.1
Huberman, J.A.2
-
26
-
-
84862163023
-
OriDB, the DNA replication origin database updated and extended
-
Siow CC, Nieduszynska SR, Müller CA, Nieduszynski CA: OriDB, the DNA replication origin database updated and extended. Nucleic Acids Res 2012, 40:D682-6.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D682-D686
-
-
Siow, C.C.1
Nieduszynska, S.R.2
Müller, C.A.3
Nieduszynski, C.A.4
-
27
-
-
34447565003
-
Replication in context: Dynamic regulation of DNA replication patterns in metazoans
-
Aladjem MI: Replication in context: dynamic regulation of DNA replication patterns in metazoans. Nat Rev Genet 2007, 8:588-600.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 588-600
-
-
Aladjem, M.I.1
-
28
-
-
54849417379
-
A revisionist replicon model for higher eukaryotic genomes
-
Hamlin JL, Mesner LD, Lar O, Torres R, Chodaparambil SV, Wang L: A revisionist replicon model for higher eukaryotic genomes. J Cell Biochem 2008, 105:321-9.
-
(2008)
J Cell Biochem
, vol.105
, pp. 321-329
-
-
Hamlin, J.L.1
Mesner, L.D.2
Lar, O.3
Torres, R.4
Chodaparambil, S.V.5
Wang, L.6
-
29
-
-
77953632048
-
Eukaryotic chromosome DNA replication: Where, when, and how?
-
Masai H, Matsumoto S, You Z, Yoshizawa-Sugata N, Oda M: Eukaryotic chromosome DNA replication: where, when, and how? Annu Rev Biochem 2010, 79:89-130.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 89-130
-
-
Masai, H.1
Matsumoto, S.2
You, Z.3
Yoshizawa-Sugata, N.4
Oda, M.5
-
30
-
-
0035861512
-
Visualization of DNA replication on individual Epstein-Barr virus episomes
-
Norio P, Schildkraut CL: Visualization of DNA replication on individual Epstein-Barr virus episomes. Science 2001, 294:2361-4.
-
(2001)
Science
, vol.294
, pp. 2361-2364
-
-
Norio, P.1
Schildkraut, C.L.2
-
31
-
-
0028032302
-
Alignment and sensitive detection of DNA by a moving interface
-
Bensimon A, Simon A, Chiffaudel A, Croquette V, Heslot F, Bensimon D: Alignment and sensitive detection of DNA by a moving interface. Science 1994, 265:2096-8.
-
(1994)
Science
, vol.265
, pp. 2096-2098
-
-
Bensimon, A.1
Simon, A.2
Chiffaudel, A.3
Croquette, V.4
Heslot, F.5
Bensimon, D.6
-
32
-
-
13044316665
-
Dynamic molecular combing: Stretching the whole human genome for high-resolution studies
-
Michalet X, Ekong R, Fougerousse F, Rousseaux S, Schurra C, Hornigold N, van Slegtenhorst M, Wolfe J, Povey S, Beckmann JS, Bensimon A: Dynamic molecular combing: stretching the whole human genome for high-resolution studies. Science 1997, 277:1518-23.
-
(1997)
Science
, vol.277
, pp. 1518-1523
-
-
Michalet, X.1
Ekong, R.2
Fougerousse, F.3
Rousseaux, S.4
Schurra, C.5
Hornigold, N.6
Van Slegtenhorst, M.7
Wolfe, J.8
Povey, S.9
Beckmann, J.S.10
Bensimon, A.11
-
33
-
-
0032752071
-
Single molecule analysis of DNA replication
-
Herrick J, Bensimon A: Single molecule analysis of DNA replication. Biochimie 1999, 81:859-71.
-
(1999)
Biochimie
, vol.81
, pp. 859-871
-
-
Herrick, J.1
Bensimon, A.2
-
34
-
-
68349132122
-
Introduction to molecular combing: Genomics, DNA replication, and cancer
-
Herrick J, Bensimon A: Introduction to molecular combing: genomics, DNA replication, and cancer. Methods Mol Biol 2009, 521:71-101.
-
(2009)
Methods Mol Biol
, vol.521
, pp. 71-101
-
-
Herrick, J.1
Bensimon, A.2
-
35
-
-
84865547058
-
Analysis of DNA replication profiles in budding yeast and mammalian cells using DNA combing
-
Bianco JN, Poli J, Saksouk J, Bacal J, Silva MJ, Yoshida K, Lin Y, Tourrière H, Lengronne A, Pasero P: Analysis of DNA replication profiles in budding yeast and mammalian cells using DNA combing. Methods 2012, 57:149-57.
-
(2012)
Methods
, vol.57
, pp. 149-157
-
-
Bianco, J.N.1
Poli, J.2
Saksouk, J.3
Bacal, J.4
Silva, M.J.5
Yoshida, K.6
Lin, Y.7
Tourrière, H.8
Lengronne, A.9
Pasero, P.10
-
36
-
-
84887408141
-
Replication dynamics: Biases and robustness of DNA fiber analysis
-
Técher H, Koundrioukoff S, Azar D, Wilhelm T, Carignon S, Brison O, Debatisse M, Le Tallec B: Replication dynamics: biases and robustness of DNA fiber analysis. J Mol Biol 2013, 425:4845-55.
-
(2013)
J Mol Biol
, vol.425
, pp. 4845-4855
-
-
Técher, H.1
Koundrioukoff, S.2
Azar, D.3
Wilhelm, T.4
Carignon, S.5
Brison, O.6
Debatisse, M.7
Le Tallec, B.8
-
37
-
-
0036791653
-
Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus
-
Pasero P, Bensimon A, Schwob E: Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus. Genes Dev 2002, 16:2479-84.
-
(2002)
Genes Dev
, vol.16
, pp. 2479-2484
-
-
Pasero, P.1
Bensimon, A.2
Schwob, E.3
-
38
-
-
30044438457
-
DNA replication origins fire stochastically in fission yeast
-
Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N: DNA replication origins fire stochastically in fission yeast. Mol Biol Cell 2006, 17:308-16.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 308-316
-
-
Patel, P.K.1
Arcangioli, B.2
Baker, S.P.3
Bensimon, A.4
Rhind, N.5
-
39
-
-
0042743766
-
Dynamics of DNA replication in mammalian somatic cells: Nucleotide pool modulates origin choice and interorigin spacing
-
Anglana M, Apiou F, Bensimon A, Debatisse M: Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing. Cell 2003, 114:385-94.
-
(2003)
Cell
, vol.114
, pp. 385-394
-
-
Anglana, M.1
Apiou, F.2
Bensimon, A.3
Debatisse, M.4
-
40
-
-
33845405316
-
DNA replication origin interference increases the spacing between initiation events in human cells
-
Lebofsky R, Heilig R, Sonnleitner M, Weissenbach J, Bensimon A: DNA replication origin interference increases the spacing between initiation events in human cells. Mol Biol Cell 2006, 17:5337-45.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 5337-5345
-
-
Lebofsky, R.1
Heilig, R.2
Sonnleitner, M.3
Weissenbach, J.4
Bensimon, A.5
-
41
-
-
23444434202
-
A genomic view of eukaryotic DNA replication
-
MacAlpine DM, Bell SP: A genomic view of eukaryotic DNA replication. Chromosome Res 2005, 13:309-26.
-
(2005)
Chromosome Res
, vol.13
, pp. 309-326
-
-
MacAlpine, D.M.1
Bell, S.P.2
-
42
-
-
77956879643
-
Evaluating genome-scale approaches to eukaryotic DNA replication
-
Gilbert DM: Evaluating genome-scale approaches to eukaryotic DNA replication. Nat Rev Genet 2010, 11:673-84.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 673-684
-
-
Gilbert, D.M.1
-
45
-
-
0035861492
-
Genome-wide distribution of ORC and MCM proteins in S. Cerevisiae: High-resolution mapping of replication origins
-
Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM: Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 2001, 294:2357-60.
-
(2001)
Science
, vol.294
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
46
-
-
34547236841
-
Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. Cerevisiae
-
Xu W, Aparicio JG, Aparicio OM, Tavaré S: Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 2006, 7:276.
-
(2006)
BMC Genomics
, vol.7
, pp. 276
-
-
Xu, W.1
Aparicio, J.G.2
Aparicio, O.M.3
Tavaré, S.4
-
47
-
-
75649109712
-
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
-
MacAlpine HK, Gordân R, Powell SK, Hartemink AJ, MacAlpine DM: Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading. Genome Res 2010, 20:201-11.
-
(2010)
Genome Res
, vol.20
, pp. 201-211
-
-
MacAlpine, H.K.1
Gordân, R.2
Powell, S.K.3
Hartemink, A.J.4
MacAlpine, D.M.5
-
48
-
-
84871992012
-
GiaccaM, Pelicci PG: Genome-widemapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing
-
Dellino GI, Cittaro D, Piccioni R, Luzi L, Banfi S, Segalla S, Cesaroni M, Mendoza-Maldonado R,GiaccaM, Pelicci PG: Genome-widemapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing. Genome Res 2013, 23:1-11.
-
(2013)
Genome Res
, vol.23
, pp. 1-11
-
-
Dellino, G.I.1
Cittaro, D.2
Piccioni, R.3
Luzi, L.4
Banfi, S.5
Segalla, S.6
Cesaroni, M.7
Mendoza-Maldonado, R.8
-
49
-
-
77649236880
-
Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches
-
Schepers A, Papior P: Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches. Chromosome Res 2010, 18:63-77.
-
(2010)
Chromosome Res
, vol.18
, pp. 63-77
-
-
Schepers, A.1
Papior, P.2
-
50
-
-
33846240855
-
Multiple functions of the origin recognition complex
-
Chesnokov IN: Multiple functions of the origin recognition complex. Int Rev Cytol 2007, 256:69-109.
-
(2007)
Int Rev Cytol
, vol.256
, pp. 69-109
-
-
Chesnokov, I.N.1
-
52
-
-
59849095061
-
Orc1 controls centriole and centrosome copy number in human cells
-
Hemerly AS, Prasanth SG, Siddiqui K, Stillman B: Orc1 controls centriole and centrosome copy number in human cells. Science 2009, 323:789-93.
-
(2009)
Science
, vol.323
, pp. 789-793
-
-
Hemerly, A.S.1
Prasanth, S.G.2
Siddiqui, K.3
Stillman, B.4
-
53
-
-
77957011803
-
Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization
-
Prasanth SG, Shen Z, Prasanth KV, Stillman B: Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization. Proc Natl Acad Sci USA 2010, 107:15093-8.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 15093-15098
-
-
Prasanth, S.G.1
Shen, Z.2
Prasanth, K.V.3
Stillman, B.4
-
54
-
-
79958750543
-
ORCanization " on heterochromatin: Linking DNA replication initiation to chromatin organization
-
Chakraborty A, Shen Z, Prasanth SG: "ORCanization " on heterochromatin: linking DNA replication initiation to chromatin organization. Epigenetics 2011, 6:665-70.
-
(2011)
Epigenetics
, vol.6
, pp. 665-670
-
-
Chakraborty, A.1
Shen, Z.2
Prasanth, S.G.3
-
55
-
-
0037319618
-
Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem
-
Hyrien O, Marheineke K, Goldar A: Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem. Bioessays 2003, 25:116-25.
-
(2003)
Bioessays
, vol.25
, pp. 116-125
-
-
Hyrien, O.1
Marheineke, K.2
Goldar, A.3
-
56
-
-
79961170861
-
How dormant origins promote complete genome replication
-
Blow JJ, Ge XQ, Jackson DA: How dormant origins promote complete genome replication. Trends Biochem Sci 2011, 36:405-14.
-
(2011)
Trends Biochem Sci
, vol.36
, pp. 405-414
-
-
Blow, J.J.1
Ge, X.Q.2
Jackson, D.A.3
-
57
-
-
0029831706
-
ORC- and Cdc6-dependent complexes at active and inactive chromosomal replication origins in Saccharomyces cerevisiae
-
Santocanale C, Diffley JF: ORC- and Cdc6-dependent complexes at active and inactive chromosomal replication origins in Saccharomyces cerevisiae. EMBO J 1996, 15:6671-9.
-
(1996)
EMBO J
, vol.15
, pp. 6671-6679
-
-
Santocanale, C.1
Diffley, J.F.2
-
58
-
-
34547637896
-
Le Beau, Michelle M: High-throughput mapping of origins of replication in human cells
-
Lucas I, Palakodeti A, Jiang Y, Young DJ, Jiang N, Fernald AA, Le Beau, Michelle M: High-throughput mapping of origins of replication in human cells. EMBO Rep 2007, 8:770-7.
-
(2007)
EMBO Rep
, vol.8
, pp. 770-777
-
-
Lucas, I.1
Palakodeti, A.2
Jiang, Y.3
Young, D.J.4
Jiang, N.5
Fernald, A.A.6
-
59
-
-
76049105950
-
Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection
-
Karnani N, Taylor CM, Malhotra A, Dutta A: Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection. Mol Biol Cell 2010, 21:393-404.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 393-404
-
-
Karnani, N.1
Taylor, C.M.2
Malhotra, A.3
Dutta, A.4
-
60
-
-
84901611545
-
Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization
-
Mukhopadhyay R, Lajugie J, Fourel N, Selzer A, Schizas M, Bartholdy B, Mar J, Lin CM, Martin MM, Ryan M, Aladjem MI, Bouhassira EE: Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization. PLoS Genet 2014, 10:e1004319.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004319
-
-
Mukhopadhyay, R.1
Lajugie, J.2
Fourel, N.3
Selzer, A.4
Schizas, M.5
Bartholdy, B.6
Mar, J.7
Lin, C.M.8
Martin, M.M.9
Ryan, M.10
Aladjem, M.I.11
Bouhassira, E.E.12
-
61
-
-
76349123622
-
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
-
Hansen RS, Thomas S, Sandstrom R, Canfield TK, Thurman RE, Weaver M, Dorschner MO, Gartler SM, Stamatoyannopoulos JA: Sequencing newly replicated DNA reveals widespread plasticity in human replication timing. Proc Natl Acad Sci USA 2010, 107:139-44.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 139-144
-
-
Hansen, R.S.1
Thomas, S.2
Sandstrom, R.3
Canfield, T.K.4
Thurman, R.E.5
Weaver, M.6
Dorschner, M.O.7
Gartler, S.M.8
Stamatoyannopoulos, J.A.9
-
62
-
-
77950661675
-
Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes
-
Chen C, Rappailles A, Duquenne L, Huvet M, Guilbaud G, Farinelli L, Audit B, d'Aubenton-Carafa Y, Arneodo A, Hyrien O, Thermes C: Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes. Genome Res 2010, 20:447-57.
-
(2010)
Genome Res
, vol.20
, pp. 447-457
-
-
Chen, C.1
Rappailles, A.2
Duquenne, L.3
Huvet, M.4
Guilbaud, G.5
Farinelli, L.6
Audit, B.7
D'Aubenton-Carafa, Y.8
Arneodo, A.9
Hyrien, O.10
Thermes, C.11
-
63
-
-
84861147700
-
Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines
-
Baker A, Audit B, Chen C, Moindrot B, Leleu A, Guilbaud G, Rappailles A, Vaillant C, Goldar A, Mongelard F, d'Aubenton-Carafa Y, Hyrien O, Thermes C, Arneodo A: Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines. PLoS Comput Biol 2012, 8: e1002443.
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002443
-
-
Baker, A.1
Audit, B.2
Chen, C.3
Moindrot, B.4
Leleu, A.5
Guilbaud, G.6
Rappailles, A.7
Vaillant, C.8
Goldar, A.9
Mongelard, F.10
D'Aubenton-Carafa, Y.11
Hyrien, O.12
Thermes, C.13
Arneodo, A.14
-
64
-
-
84887401265
-
From simple bacterial and archaeal replicons to replication N/U-domains
-
Hyrien O, Rappailles A, Guilbaud G, Baker A, Chen C, Goldar A, Petryk N, Kahli M, Ma E, d'Aubenton-Carafa Y, Audit B, Thermes C, Arneodo A: From simple bacterial and archaeal replicons to replication N/U-domains. J Mol Biol 2013, 425:4673-89.
-
(2013)
J Mol Biol
, vol.425
, pp. 4673-4689
-
-
Hyrien, O.1
Rappailles, A.2
Guilbaud, G.3
Baker, A.4
Chen, C.5
Goldar, A.6
Petryk, N.7
Kahli, M.8
Ma, E.9
D'Aubenton-Carafa, Y.10
Audit, B.11
Thermes, C.12
Arneodo, A.13
-
65
-
-
33344470620
-
Isolating apparently pure libraries of replication origins from complex genomes
-
Mesner LD, Crawford EL, Hamlin JL: Isolating apparently pure libraries of replication origins from complex genomes. Mol Cell 2006, 21:719-26.
-
(2006)
Mol Cell
, vol.21
, pp. 719-726
-
-
Mesner, L.D.1
Crawford, E.L.2
Hamlin, J.L.3
-
66
-
-
68349148701
-
Purification of restriction fragments containing replication intermediates from complex genomes for 2-D gel analysis
-
Mesner LD, Dijkwel PA, Hamlin JL: Purification of restriction fragments containing replication intermediates from complex genomes for 2-D gel analysis. Methods Mol Biol 2009, 521:121-37.
-
(2009)
Methods Mol Biol
, vol.521
, pp. 121-137
-
-
Mesner, L.D.1
Dijkwel, P.A.2
Hamlin, J.L.3
-
67
-
-
79952270733
-
Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription
-
Mesner LD, Valsakumar V, Karnani N, Dutta A, Hamlin JL, Bekiranov S: Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription. Genome Res 2011, 21:377-89.
-
(2011)
Genome Res
, vol.21
, pp. 377-389
-
-
Mesner, L.D.1
Valsakumar, V.2
Karnani, N.3
Dutta, A.4
Hamlin, J.L.5
Bekiranov, S.6
-
68
-
-
84887404285
-
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins
-
Mesner LD, Valsakumar V, Cieslik M, Pickin R, Hamlin JL, Bekiranov S: Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins. Genome Res 2013, 23:1774-88.
-
(2013)
Genome Res
, vol.23
, pp. 1774-1788
-
-
Mesner, L.D.1
Valsakumar, V.2
Cieslik, M.3
Pickin, R.4
Hamlin, J.L.5
Bekiranov, S.6
-
69
-
-
50849104741
-
Detection of circular telomeric DNA without 2D gel electrophoresis
-
Dlaska M, Anderl C, Eisterer W, Bechter OE: Detection of circular telomeric DNA without 2D gel electrophoresis. DNA Cell Biol 2008, 27:489-96.
-
(2008)
DNA Cell Biol
, vol.27
, pp. 489-496
-
-
Dlaska, M.1
Anderl, C.2
Eisterer, W.3
Bechter, O.E.4
-
70
-
-
67849121611
-
Extrachromosomal circular DNA in eukaryotes: Possible involvement in the plasticity of tandem repeats
-
Cohen S, Segal D: Extrachromosomal circular DNA in eukaryotes: possible involvement in the plasticity of tandem repeats. Cytogenet Genome Res 2009, 124:327-38.
-
(2009)
Cytogenet Genome Res
, vol.124
, pp. 327-338
-
-
Cohen, S.1
Segal, D.2
-
71
-
-
77956382115
-
Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells
-
Cohen S, Agmon N, Sobol O, Segal D: Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells. Mobile DNA 2010, 1:11.
-
(2010)
Mobile DNA
, vol.1
, pp. 11
-
-
Cohen, S.1
Agmon, N.2
Sobol, O.3
Segal, D.4
-
72
-
-
84859516414
-
Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues
-
Shibata Y, Kumar P, Layer R, Willcox S, Gagan JR, Griffith JD, Dutta A: Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues. Science 2012, 336:82-6.
-
(2012)
Science
, vol.336
, pp. 82-86
-
-
Shibata, Y.1
Kumar, P.2
Layer, R.3
Willcox, S.4
Gagan, J.R.5
Griffith, J.D.6
Dutta, A.7
-
73
-
-
0024336294
-
Mapping replication units in animal cells
-
Handeli S, Klar A, Meuth M, Cedar H: Mapping replication units in animal cells. Cell 1989, 57:909-20.
-
(1989)
Cell
, vol.57
, pp. 909-920
-
-
Handeli, S.1
Klar, A.2
Meuth, M.3
Cedar, H.4
-
74
-
-
0025931653
-
Emetine allows identification of origins of mammalian DNA replication by imbalanced DNA synthesis, not through conservative nucleosome segregation
-
Burhans WC, Vassilev LT, Wu J, Sogo JM, Nallaseth FS, DePamphilis ML: Emetine allows identification of origins of mammalian DNA replication by imbalanced DNA synthesis, not through conservative nucleosome segregation. EMBO J 1991, 10:4351-60.
-
(1991)
EMBO J
, vol.10
, pp. 4351-4360
-
-
Burhans, W.C.1
Vassilev, L.T.2
Wu, J.3
Sogo, J.M.4
Nallaseth, F.S.5
DePamphilis, M.L.6
-
75
-
-
0025073066
-
Identification of an origin of bidirectional DNA replication in mammalian chromosomes
-
Burhans WC, Vassilev LT, Caddle MS, Heintz NH, DePamphilis ML: Identification of an origin of bidirectional DNA replication in mammalian chromosomes. Cell 1990, 62:955-65.
-
(1990)
Cell
, vol.62
, pp. 955-965
-
-
Burhans, W.C.1
Vassilev, L.T.2
Caddle, M.S.3
Heintz, N.H.4
DePamphilis, M.L.5
-
76
-
-
0020118996
-
Initiation of SV40 DNA replication in vivo: Location and structure of 50 ends of DNA synthesized in the ori region
-
Hay RT, DePamphilis ML: Initiation of SV40 DNA replication in vivo: location and structure of 50 ends of DNA synthesized in the ori region. Cell 1982, 28:767-79.
-
(1982)
Cell
, vol.28
, pp. 767-779
-
-
Hay, R.T.1
DePamphilis, M.L.2
-
77
-
-
0023376424
-
The origin of bidirectional DNA replication in polyoma virus
-
Hendrickson EA, Fritze CE, Folk WR, DePamphilis ML: The origin of bidirectional DNA replication in polyoma virus. EMBO J 1987, 6:2011-8.
-
(1987)
EMBO J
, vol.6
, pp. 2011-2018
-
-
Hendrickson, E.A.1
Fritze, C.E.2
Folk, W.R.3
DePamphilis, M.L.4
-
78
-
-
84862776917
-
Intrinsic coupling of lagging-strand synthesis to chromatin assembly
-
Smith DJ, Whitehouse I: Intrinsic coupling of lagging-strand synthesis to chromatin assembly. Nature 2012, 483:434-8.
-
(2012)
Nature
, vol.483
, pp. 434-438
-
-
Smith, D.J.1
Whitehouse, I.2
-
79
-
-
84876073691
-
Quantitative, genome-wide analysis of eukaryotic replication initiation and termination
-
McGuffee SR, Smith DJ, Whitehouse I: Quantitative, genome-wide analysis of eukaryotic replication initiation and termination. Mol Cell 2013, 50:123-35.
-
(2013)
Mol Cell
, vol.50
, pp. 123-135
-
-
McGuffee, S.R.1
Smith, D.J.2
Whitehouse, I.3
-
80
-
-
0031278995
-
Replication initiation point mapping
-
Gerbi SA, Bielinsky AK: Replication initiation point mapping. Methods 1997, 13:271-80.
-
(1997)
Methods
, vol.13
, pp. 271-280
-
-
Gerbi, S.A.1
Bielinsky, A.K.2
-
81
-
-
0032472223
-
Discrete start sites for DNA synthesis in the yeast ARS1 origin
-
Bielinsky AK, Gerbi SA: Discrete start sites for DNA synthesis in the yeast ARS1 origin. Science 1998, 279:95-8.
-
(1998)
Science
, vol.279
, pp. 95-98
-
-
Bielinsky, A.K.1
Gerbi, S.A.2
-
82
-
-
0001798918
-
Methods to map origins of replication in eukaryotes
-
Cotterill S. Oxford: Oxford University Press
-
Gerbi SA, Bielinsky AK, Liang C, Lunyak VV, Urnov FD: Methods to map origins of replication in eukaryotes. In Eukaryotic DNA Replication: a Practical Approach. Edited by Cotterill S. Oxford: Oxford University Press; 1999: 1-42.
-
(1999)
Eukaryotic DNA Replication: A Practical Approach.
, pp. 1-42
-
-
Gerbi, S.A.1
Bielinsky, A.K.2
Liang, C.3
Lunyak, V.V.4
Urnov, F.D.5
-
83
-
-
16644370790
-
Mapping origins of DNA replication in eukaryotes
-
Gerbi SA: Mapping origins of DNA replication in eukaryotes. Methods Mol Biol 2005, 296:167-80.
-
(2005)
Methods Mol Biol
, vol.296
, pp. 167-180
-
-
Gerbi, S.A.1
-
84
-
-
68349138319
-
Replication initiation point mapping: Approach and implications
-
Das-Bradoo S, Bielinsky A: Replication initiation point mapping: approach and implications. Methods Mol Biol 2009, 521:105-20.
-
(2009)
Methods Mol Biol
, vol.521
, pp. 105-120
-
-
Das-Bradoo, S.1
Bielinsky, A.2
-
85
-
-
0033120953
-
Chromosomal ARS1 has a single leading strand start site
-
Bielinsky AK, Gerbi SA: Chromosomal ARS1 has a single leading strand start site. Mol Cell 1999, 3:477-86.
-
(1999)
Mol Cell
, vol.3
, pp. 477-486
-
-
Bielinsky, A.K.1
Gerbi, S.A.2
-
86
-
-
0033570158
-
Organization of DNA replication origins in the fission yeast genome
-
Gómez M, Antequera F: Organization of DNA replication origins in the fission yeast genome. EMBO J 1999, 18:5683-90.
-
(1999)
EMBO J
, vol.18
, pp. 5683-5690
-
-
Gómez, M.1
Antequera, F.2
-
87
-
-
0035908951
-
Origin recognition complex binding to a metazoan replication origin
-
Bielinsky AK, Blitzblau H, Beall EL, Ezrokhi M, Smith HS, Botchan MR, Gerbi SA: Origin recognition complex binding to a metazoan replication origin. Curr Biol 2001, 11:1427-31.
-
(2001)
Curr Biol
, vol.11
, pp. 1427-1431
-
-
Bielinsky, A.K.1
Blitzblau, H.2
Beall, E.L.3
Ezrokhi, M.4
Smith, H.S.5
Botchan, M.R.6
Gerbi, S.A.7
-
88
-
-
0034677730
-
Start sites of bidirectional DNA synthesis at the human lamin B2 origin
-
Abdurashidova G, Deganuto M, Klima R, Riva S, Biamonti G, Giacca M, Falaschi A: Start sites of bidirectional DNA synthesis at the human lamin B2 origin. Science 2000, 287:2023-6.
-
(2000)
Science
, vol.287
, pp. 2023-2026
-
-
Abdurashidova, G.1
Deganuto, M.2
Klima, R.3
Riva, S.4
Biamonti, G.5
Giacca, M.6
Falaschi, A.7
-
89
-
-
0013924499
-
Regulation of lambda exonuclease. I. Properties of lambda exonuclease purified from lysogens of lambda T11 and wild type
-
Radding CM: Regulation of lambda exonuclease. I. Properties of lambda exonuclease purified from lysogens of lambda T11 and wild type. J Mol Biol 1966, 18:235-50.
-
(1966)
J Mol Biol
, vol.18
, pp. 235-250
-
-
Radding, C.M.1
-
90
-
-
0014216084
-
An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction
-
Little JW: An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction. J Biol Chem 1967, 242:679-86.
-
(1967)
J Biol Chem
, vol.242
, pp. 679-686
-
-
Little, J.W.1
-
91
-
-
58749117206
-
One-way PCR-based mapping of a replication initiation point (RIP)
-
Romero J, Lee H: One-way PCR-based mapping of a replication initiation point (RIP). Nat Protoc 2008, 3:1729-35.
-
(2008)
Nat Protoc
, vol.3
, pp. 1729-1735
-
-
Romero, J.1
Lee, H.2
-
92
-
-
84865553042
-
Genomescale identification of active DNA replication origins
-
Cayrou C, Grégoire D, Coulombe P, Danis E, Méchali M: Genomescale identification of active DNA replication origins. Methods 2012, 57:158-64.
-
(2012)
Methods
, vol.57
, pp. 158-164
-
-
Cayrou, C.1
Grégoire, D.2
Coulombe, P.3
Danis, E.4
Méchali, M.5
-
93
-
-
80052523848
-
Genomescale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
-
Cayrou C, Coulombe P, Vigneron A, Stanojcic S, Ganier O, Peiffer I, Rivals E, Puy A, Laurent-Chabalier S, Desprat R, Méchali M: Genomescale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features. Genome Res 2011, 21:1438-49.
-
(2011)
Genome Res
, vol.21
, pp. 1438-1449
-
-
Cayrou, C.1
Coulombe, P.2
Vigneron, A.3
Stanojcic, S.4
Ganier, O.5
Peiffer, I.6
Rivals, E.7
Puy, A.8
Laurent-Chabalier, S.9
Desprat, R.10
Méchali, M.11
-
94
-
-
84857472898
-
New insights into replication origin characteristics in metazoans
-
Cayrou C, Coulombe P, Puy A, Rialle S, Kaplan N, Segal E, Méchali M: New insights into replication origin characteristics in metazoans. Cell Cycle 2012, 11:658-67.
-
(2012)
Cell Cycle
, vol.11
, pp. 658-667
-
-
Cayrou, C.1
Coulombe, P.2
Puy, A.3
Rialle, S.4
Kaplan, N.5
Segal, E.6
Méchali, M.7
-
95
-
-
66149138883
-
Transcription initiation activity sets replication origin efficiency in mammalian cells
-
Sequeira-Mendes J, Díaz-Uriarte R, Apedaile A, Huntley D, Brockdorff N, Gómez M: Transcription initiation activity sets replication origin efficiency in mammalian cells. PLoS Genet 2009, 5:e1000446.
-
(2009)
PLoS Genet
, vol.5
, pp. e1000446
-
-
Sequeira-Mendes, J.1
Díaz-Uriarte, R.2
Apedaile, A.3
Huntley, D.4
Brockdorff, N.5
Gómez, M.6
-
96
-
-
57349149434
-
Genome-wide studies highlight indirect links between human replication origins and gene regulation
-
Cadoret J, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville H, Prioleau M: Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proc Natl Acad Sci USA 2008, 105:15837-42.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15837-15842
-
-
Cadoret, J.1
Meisch, F.2
Hassan-Zadeh, V.3
Luyten, I.4
Guillet, C.5
Duret, L.6
Quesneville, H.7
Prioleau, M.8
-
97
-
-
79955940233
-
Preferential localization of human origins of DNA replication at the 50-ends of expressed genes and at evolutionarily conserved DNA sequences
-
Valenzuela MS, Chen Y, Davis S, Yang F, Walker RL, Bilke S, Lueders J, Martin MM, Aladjem MI, Massion PP, Meltzer PS: Preferential localization of human origins of DNA replication at the 50-ends of expressed genes and at evolutionarily conserved DNA sequences. PLoS ONE 2011, 6:e17308.
-
(2011)
PLoS ONE
, vol.6
, pp. e17308
-
-
Valenzuela, M.S.1
Chen, Y.2
Davis, S.3
Yang, F.4
Walker, R.L.5
Bilke, S.6
Lueders, J.7
Martin, M.M.8
Aladjem, M.I.9
Massion, P.P.10
Meltzer, P.S.11
-
98
-
-
80555157584
-
Genome-wide depletion of replication initiation events in highly transcribed regions
-
Martin MM, Ryan M, Kim R, Zakas AL, Fu H, Lin CM, Reinhold WC, Davis SR, Bilke S, Liu H, Doroshow JH, Reimers MA, Valenzuela MS, Pommier Y, Meltzer PS, Aladjem MI: Genome-wide depletion of replication initiation events in highly transcribed regions. Genome Res 2011, 21:1822-32.
-
(2011)
Genome Res
, vol.21
, pp. 1822-1832
-
-
Martin, M.M.1
Ryan, M.2
Kim, R.3
Zakas, A.L.4
Fu, H.5
Lin, C.M.6
Reinhold, W.C.7
Davis, S.R.8
Bilke, S.9
Liu, H.10
Doroshow, J.H.11
Reimers, M.A.12
Valenzuela, M.S.13
Pommier, Y.14
Meltzer, P.S.15
Aladjem, M.I.16
-
99
-
-
84864690009
-
Unraveling cell type-specific and reprogrammable human replication origin signatures associated with Gquadruplex consensus motifs
-
Besnard E, Babled A, Lapasset L, Milhavet O, Parrinello H, Dantec C, Marin J, Lemaitre J: Unraveling cell type-specific and reprogrammable human replication origin signatures associated with Gquadruplex consensus motifs. Nat Struct Mol Biol 2012, 19:837-44.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 837-844
-
-
Besnard, E.1
Babled, A.2
Lapasset, L.3
Milhavet, O.4
Parrinello, H.5
Dantec, C.6
Marin, J.7
Lemaitre, J.8
-
100
-
-
84924634587
-
Characterizing and controlling intrinsic biases of Lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins
-
in press
-
Foulk MS, Urban JM, Casella C and Gerbi SA: Characterizing and controlling intrinsic biases of Lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins. Genome Res 2015, in press.
-
(2015)
Genome Res
-
-
Foulk, M.S.1
Urban, J.M.2
Casella, C.3
Gerbi, S.A.4
-
101
-
-
84901599268
-
The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells
-
Picard F, Cadoret J, Audit B, Arneodo A, Alberti A, Battail C, Duret L, Prioleau M: The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells. PLoS Genet 2014, 10:e1004282.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004282
-
-
Picard, F.1
Cadoret, J.2
Audit, B.3
Arneodo, A.4
Alberti, A.5
Battail, C.6
Duret, L.7
Prioleau, M.8
-
102
-
-
0141534308
-
Sequence-dependent pausing of single lambda exonuclease molecules
-
Perkins TT, Dalal RV, Mitsis PG, Block SM: Sequence-dependent pausing of single lambda exonuclease molecules. Science 2003, 301:1914-8.
-
(2003)
Science
, vol.301
, pp. 1914-1918
-
-
Perkins, T.T.1
Dalal, R.V.2
Mitsis, P.G.3
Block, S.M.4
-
103
-
-
0041821716
-
Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder
-
van Oijen, Antoine M, Blainey PC, Crampton DJ, Richardson CC, Ellenberger T, Xie XS: Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder. Science 2003, 301:1235-8.
-
(2003)
Science
, vol.301
, pp. 1235-1238
-
-
Van Oijen, A.M.1
Blainey, P.C.2
Crampton, D.J.3
Richardson, C.C.4
Ellenberger, T.5
Xie, X.S.6
-
104
-
-
73649106535
-
Lambda exonuclease digestion of CGG trinucleotide repeats
-
Conroy RS, Koretsky AP, Moreland J: Lambda exonuclease digestion of CGG trinucleotide repeats. Eur Biophys J 2010, 39:337-43.
-
(2010)
Eur Biophys J
, vol.39
, pp. 337-343
-
-
Conroy, R.S.1
Koretsky, A.P.2
Moreland, J.3
-
105
-
-
34250633242
-
An exonuclease I hydrolysis assay for evaluating G-quadruplex stabilization by small molecules
-
Yao Y, Wang Q, Hao Y, Tan Z: An exonuclease I hydrolysis assay for evaluating G-quadruplex stabilization by small molecules. Nucleic Acids Res 2007, 35:e68.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. e68
-
-
Yao, Y.1
Wang, Q.2
Hao, Y.3
Tan, Z.4
-
106
-
-
0033556134
-
A DNA polymerase stop assay for G-quadruplex-interactive compounds
-
Han H, Hurley LH, Salazar M: A DNA polymerase stop assay for G-quadruplex-interactive compounds. Nucleic Acids Res 1999, 27:537-42.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 537-542
-
-
Han, H.1
Hurley, L.H.2
Salazar, M.3
-
107
-
-
4544261025
-
Stabilization of the c-myc gene promoter quadruplex by specific ligands' inhibitors of telomerase
-
Lemarteleur T, Gomez D, Paterski R, Mandine E, Mailliet P, Riou J: Stabilization of the c-myc gene promoter quadruplex by specific ligands' inhibitors of telomerase. Biochem Biophys Res Commun 2004, 323:802-8.
-
(2004)
Biochem Biophys Res Commun
, vol.323
, pp. 802-808
-
-
Lemarteleur, T.1
Gomez, D.2
Paterski, R.3
Mandine, E.4
Mailliet, P.5
Riou, J.6
-
108
-
-
84921329939
-
How the misincorporation of ribonucleotides into genomic DNA can be both harmful and helpful to cells
-
Potenski CJ, Klein HL: How the misincorporation of ribonucleotides into genomic DNA can be both harmful and helpful to cells. Nucleic Acids Res 2014, 42:10226-34.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 10226-10234
-
-
Potenski, C.J.1
Klein, H.L.2
-
109
-
-
84880697144
-
Next-generation sequencing of Okazaki fragments extracted from Saccharomyces cerevisiae
-
Yang W, Li X: Next-generation sequencing of Okazaki fragments extracted from Saccharomyces cerevisiae. FEBS Lett 2013, 587:2441-7.
-
(2013)
FEBS Lett
, vol.587
, pp. 2441-2447
-
-
Yang, W.1
Li, X.2
-
110
-
-
4444384150
-
The replicon revisited: An old model learns new tricks in metazoan chromosomes
-
Aladjem MI, Fanning E: The replicon revisited: an old model learns new tricks in metazoan chromosomes. EMBO Rep 2004, 5:686-91.
-
(2004)
EMBO Rep
, vol.5
, pp. 686-691
-
-
Aladjem, M.I.1
Fanning, E.2
-
111
-
-
28444483937
-
Origins go plastic
-
Gilbert DM: Origins go plastic. Mol Cell 2005, 20:657-8.
-
(2005)
Mol Cell
, vol.20
, pp. 657-658
-
-
Gilbert, D.M.1
-
112
-
-
79957808242
-
Open sesame: Activating dormant replication origins in the mouse immunoglobulin heavy chain (Igh) locus
-
Borowiec JA, Schildkraut CL: Open sesame: activating dormant replication origins in the mouse immunoglobulin heavy chain (Igh) locus. Curr Opin Cell Biol 2011, 23:284-92.
-
(2011)
Curr Opin Cell Biol
, vol.23
, pp. 284-292
-
-
Borowiec, J.A.1
Schildkraut, C.L.2
-
113
-
-
0027213553
-
Eukaryotic DNA replication: Anatomy of an origin
-
DePamphilis ML: Eukaryotic DNA replication: anatomy of an origin. Annu Rev Biochem 1993, 62:29-63.
-
(1993)
Annu Rev Biochem
, vol.62
, pp. 29-63
-
-
DePamphilis, M.L.1
-
114
-
-
0027731437
-
Initiation at closely spaced replication origins in a yeast chromosome
-
Brewer BJ, Fangman WL: Initiation at closely spaced replication origins in a yeast chromosome. Science 1993, 262:1728-31.
-
(1993)
Science
, vol.262
, pp. 1728-1731
-
-
Brewer, B.J.1
Fangman, W.L.2
-
115
-
-
0028346546
-
Initiation preference at a yeast origin of replication
-
Brewer BJ, Fangman WL: Initiation preference at a yeast origin of replication. Proc Natl Acad Sci USA 1994, 91:3418-22.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 3418-3422
-
-
Brewer, B.J.1
Fangman, W.L.2
-
116
-
-
0028365292
-
Replicator dominance in a eukaryotic chromosome
-
Marahrens Y, Stillman B: Replicator dominance in a eukaryotic chromosome. EMBO J 1994, 13:3395-400.
-
(1994)
EMBO J
, vol.13
, pp. 3395-3400
-
-
Marahrens, Y.1
Stillman, B.2
-
117
-
-
0033568196
-
Activation of dormant origins of DNA replication in budding yeast
-
Santocanale C, Sharma K, Diffley JF: Activation of dormant origins of DNA replication in budding yeast. Genes Dev 1999, 13:2360-4.
-
(1999)
Genes Dev
, vol.13
, pp. 2360-2364
-
-
Santocanale, C.1
Sharma, K.2
Diffley, J.F.3
-
118
-
-
0032784059
-
Activation of silent replication origins at autonomously replicating sequence elements near the HML locus in budding yeast
-
Vujcic M, Miller CA, Kowalski D: Activation of silent replication origins at autonomously replicating sequence elements near the HML locus in budding yeast. Mol Cell Biol 1999, 19:6098-109.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 6098-6109
-
-
Vujcic, M.1
Miller, C.A.2
Kowalski, D.3
-
119
-
-
0025340970
-
Replication initiates in a broad zone in the amplified CHO dihydrofolate reductase domain
-
Vaughn JP, Dijkwel PA, Hamlin JL: Replication initiates in a broad zone in the amplified CHO dihydrofolate reductase domain. Cell 1990, 61:1075-87.
-
(1990)
Cell
, vol.61
, pp. 1075-1087
-
-
Vaughn, J.P.1
Dijkwel, P.A.2
Hamlin, J.L.3
-
120
-
-
0029007149
-
The Chinese hamster dihydrofolate reductase origin consists of multiple potential nascent strand start sites
-
Dijkwel PA, Hamlin JL: The Chinese hamster dihydrofolate reductase origin consists of multiple potential nascent strand start sites. Mol Cell Biol 1995, 15:3023-31.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 3023-3031
-
-
Dijkwel, P.A.1
Hamlin, J.L.2
-
121
-
-
0036232401
-
Initiation sites are distributed at frequent intervals in the Chinese hamster dihydrofolate reductase origin of replication but are used with very different efficiencies
-
Dijkwel PA, Wang S, Hamlin JL: Initiation sites are distributed at frequent intervals in the Chinese hamster dihydrofolate reductase origin of replication but are used with very different efficiencies. Mol Cell Biol 2002, 22:3053-65.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 3053-3065
-
-
Dijkwel, P.A.1
Wang, S.2
Hamlin, J.L.3
-
122
-
-
0032245260
-
Distal sequences, but not ori-beta/OBR-1, are essential for initiation of DNA replication in the Chinese hamster DHFR origin
-
Kalejta RF, Li X, Mesner LD, Dijkwel PA, Lin HB, Hamlin JL: Distal sequences, but not ori-beta/OBR-1, are essential for initiation of DNA replication in the Chinese hamster DHFR origin. Mol Cell 1998, 2:797-806.
-
(1998)
Mol Cell
, vol.2
, pp. 797-806
-
-
Kalejta, R.F.1
Li, X.2
Mesner, L.D.3
Dijkwel, P.A.4
Lin, H.B.5
Hamlin, J.L.6
-
123
-
-
0037305924
-
The dihydrofolate reductase origin of replication does not contain any nonredundant genetic elements required for origin activity
-
Mesner LD, Li X, Dijkwel PA, Hamlin JL: The dihydrofolate reductase origin of replication does not contain any nonredundant genetic elements required for origin activity. Mol Cell Biol 2003, 23:804-14.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 804-814
-
-
Mesner, L.D.1
Li, X.2
Dijkwel, P.A.3
Hamlin, J.L.4
-
124
-
-
0028284564
-
Fine mapping of a replication origin of human DNA
-
Giacca M, Zentilin L, Norio P, Diviacco S, Dimitrova D, Contreas G, Biamonti G, Perini G, Weighardt F, Riva S: Fine mapping of a replication origin of human DNA. Proc Natl Acad Sci USA 1994, 91:7119-23.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 7119-7123
-
-
Giacca, M.1
Zentilin, L.2
Norio, P.3
Diviacco, S.4
Dimitrova, D.5
Contreas, G.6
Biamonti, G.7
Perini, G.8
Weighardt, F.9
Riva, S.10
-
125
-
-
12144287048
-
Paixão S, Colaluca IN, Cubells M, Peverali FA, Destro A, Giadrossi S, Giacca M, Falaschi A, Riva S, Biamonti G: Modular structure of the human lamin B2 replicator
-
Paixão S, Colaluca IN, Cubells M, Peverali FA, Destro A, Giadrossi S, Giacca M, Falaschi A, Riva S, Biamonti G: Modular structure of the human lamin B2 replicator. Mol Cell Biol 2004, 24:2958-67.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 2958-2967
-
-
-
126
-
-
1842557591
-
The human beta-globin replication initiation region consists of two modular independent replicators
-
Wang L, Lin C, Brooks S, Cimbora D, Groudine M, Aladjem MI: The human beta-globin replication initiation region consists of two modular independent replicators. Mol Cell Biol 2004, 24:3373-86.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 3373-3386
-
-
Wang, L.1
Lin, C.2
Brooks, S.3
Cimbora, D.4
Groudine, M.5
Aladjem, M.I.6
-
127
-
-
0036893611
-
Developmental changes in the Sciara II/9A initiation zone for DNA replication
-
Lunyak VV, Ezrokhi M, Smith HS, Gerbi SA: Developmental changes in the Sciara II/9A initiation zone for DNA replication. Mol Cell Biol 2002, 22:8426-37.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 8426-8437
-
-
Lunyak, V.V.1
Ezrokhi, M.2
Smith, H.S.3
Gerbi, S.A.4
-
128
-
-
0032906460
-
Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster
-
Sasaki T, Sawado T, Yamaguchi M, Shinomiya T: Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster. Mol Cell Biol 1999, 19:547-55.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 547-555
-
-
Sasaki, T.1
Sawado, T.2
Yamaguchi, M.3
Shinomiya, T.4
-
129
-
-
1542373676
-
The promoter of the Chinese hamster ovary dihydrofolate reductase gene regulates the activity of the local origin and helps define its boundaries
-
Saha S, Shan Y, Mesner LD, Hamlin JL: The promoter of the Chinese hamster ovary dihydrofolate reductase gene regulates the activity of the local origin and helps define its boundaries. Genes Dev 2004, 18:397-410.
-
(2004)
Genes Dev
, vol.18
, pp. 397-410
-
-
Saha, S.1
Shan, Y.2
Mesner, L.D.3
Hamlin, J.L.4
-
130
-
-
77954814325
-
Interplay between DNA replication and gene expression: A harmonious coexistence
-
Maric C, Prioleau M: Interplay between DNA replication and gene expression: a harmonious coexistence. Curr Opin Cell Biol 2010, 22:277-83.
-
(2010)
Curr Opin Cell Biol
, vol.22
, pp. 277-283
-
-
Maric, C.1
Prioleau, M.2
-
131
-
-
10644297436
-
Coordination of replication and transcription along a Drosophila chromosome
-
MacAlpine DM, Rodríguez HK, Bell SP: Coordination of replication and transcription along a Drosophila chromosome. Genes Dev 2004, 18:3094-105.
-
(2004)
Genes Dev
, vol.18
, pp. 3094-3105
-
-
MacAlpine, D.M.1
Rodríguez, H.K.2
Bell, S.P.3
-
132
-
-
33646576502
-
Mapping of DNA replication origins to noncoding genes of the X-inactivation center
-
Rowntree RK, Lee JT: Mapping of DNA replication origins to noncoding genes of the X-inactivation center. Mol Cell Biol 2006, 26:3707-17.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 3707-3717
-
-
Rowntree, R.K.1
Lee, J.T.2
-
133
-
-
2342468603
-
Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage
-
Gómez M, Brockdorff N: Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage. Proc Natl Acad Sci USA 2004, 101:6923-8.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6923-6928
-
-
Gómez, M.1
Brockdorff, N.2
-
134
-
-
84891696268
-
Random replication of the inactive X chromosome
-
Koren A, McCarroll SA: Random replication of the inactive X chromosome. Genome Res 2014, 24:64-9.
-
(2014)
Genome Res
, vol.24
, pp. 64-69
-
-
Koren, A.1
McCarroll, S.A.2
-
135
-
-
4143082817
-
Specification of a DNA replication origin by a transcription complex
-
Danis E, Brodolin K, Menut S, Maiorano D, Girard-Reydet C, Méchali M: Specification of a DNA replication origin by a transcription complex. Nat Cell Biol 2004, 6:721-30.
-
(2004)
Nat Cell Biol
, vol.6
, pp. 721-730
-
-
Danis, E.1
Brodolin, K.2
Menut, S.3
Maiorano, D.4
Girard-Reydet, C.5
Méchali, M.6
-
136
-
-
84904247695
-
DNA replication and transcription programs respond to the same chromatin cues
-
Lubelsky Y, Prinz JA, DeNapoli L, Li Y, Belsky JA, MacAlpine DM: DNA replication and transcription programs respond to the same chromatin cues. Genome Res 2014, 24:1102-14.
-
(2014)
Genome Res
, vol.24
, pp. 1102-1114
-
-
Lubelsky, Y.1
Prinz, J.A.2
DeNapoli, L.3
Li, Y.4
Belsky, J.A.5
MacAlpine, D.M.6
-
137
-
-
79955642432
-
Prereplication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone
-
Le Beau, Michelle M, Carignon S, Debatisse M, Prinz JA, Dennis JH, Gilbert DM
-
Lubelsky Y, Sasaki T, Kuipers MA, Lucas I, Le Beau, Michelle M, Carignon S, Debatisse M, Prinz JA, Dennis JH, Gilbert DM: Prereplication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone. Nucleic Acids Res 2011, 39:3141-55.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3141-3155
-
-
Lubelsky, Y.1
Sasaki, T.2
Kuipers, M.A.3
Lucas, I.4
-
138
-
-
3142768347
-
Chromatin regulates origin activity in Drosophila follicle cells
-
Aggarwal BD, Calvi BR: Chromatin regulates origin activity in Drosophila follicle cells. Nature 2004, 430:372-6.
-
(2004)
Nature
, vol.430
, pp. 372-376
-
-
Aggarwal, B.D.1
Calvi, B.R.2
-
139
-
-
84855373452
-
Analysis of model replication origins in Drosophila reveals new aspects of the chromatin landscape and its relationship to origin activity and the prereplicative complex
-
Liu J, McConnell K, Dixon M, Calvi BR: Analysis of model replication origins in Drosophila reveals new aspects of the chromatin landscape and its relationship to origin activity and the prereplicative complex. Mol Biol Cell 2012, 23:200-12.
-
(2012)
Mol Biol Cell
, vol.23
, pp. 200-212
-
-
Liu, J.1
McConnell, K.2
Dixon, M.3
Calvi, B.R.4
-
140
-
-
0033551686
-
Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein
-
Iizuka M, Stillman B: Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein. J Biol Chem 1999, 274:23027-34.
-
(1999)
J Biol Chem
, vol.274
, pp. 23027-23034
-
-
Iizuka, M.1
Stillman, B.2
-
141
-
-
0035805606
-
Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1
-
Burke TW, Cook JG, Asano M, Nevins JR: Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1. J Biol Chem 2001, 276:15397-408.
-
(2001)
J Biol Chem
, vol.276
, pp. 15397-15408
-
-
Burke, T.W.1
Cook, J.G.2
Asano, M.3
Nevins, J.R.4
-
142
-
-
33947177072
-
Developmentally regulated histone modifications in Drosophila follicle cells: Initiation of gene amplification is associated with histone H3and H4 hyperacetylation and H1 phosphorylation
-
Hartl T, Boswell C, Orr-Weaver TL, Bosco G: Developmentally regulated histone modifications in Drosophila follicle cells: initiation of gene amplification is associated with histone H3 and H4 hyperacetylation and H1 phosphorylation. Chromosoma 2007, 116:197-214.
-
(2007)
Chromosoma
, vol.116
, pp. 197-214
-
-
Hartl, T.1
Boswell, C.2
Orr-Weaver, T.L.3
Bosco, G.4
-
143
-
-
79959936930
-
Integrative analysis of gene amplification in Drosophila follicle cells: Parameters of origin activation and repression
-
Kim JC, Nordman J, Xie F, Kashevsky H, Eng T, Li S, MacAlpine DM, Orr-Weaver TL: Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression. Genes Dev 2011, 25:1384-98.
-
(2011)
Genes Dev
, vol.25
, pp. 1384-1398
-
-
Kim, J.C.1
Nordman, J.2
Xie, F.3
Kashevsky, H.4
Eng, T.5
Li, S.6
MacAlpine, D.M.7
Orr-Weaver, T.L.8
-
144
-
-
79957564427
-
Nucleosomes in the neighborhood: New roles for chromatin modifications in replication origin control
-
Dorn ES, Cook JG: Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control. Epigenetics 2011, 6:552-9.
-
(2011)
Epigenetics
, vol.6
, pp. 552-559
-
-
Dorn, E.S.1
Cook, J.G.2
-
145
-
-
84904170685
-
Epigenetic landscape for initiation of DNA replication
-
Sherstyuk VV, Shevchenko AI, Zakian SM: Epigenetic landscape for initiation of DNA replication. Chromosoma 2014, 123:183-99.
-
(2014)
Chromosoma
, vol.123
, pp. 183-199
-
-
Sherstyuk, V.V.1
Shevchenko, A.I.2
Zakian, S.M.3
-
146
-
-
79960202884
-
Integrative genomic analysis of human ribosomal DNA
-
Zentner GE, Saiakhova A, Manaenkov P, Adams MD, Scacheri PC: Integrative genomic analysis of human ribosomal DNA. Nucleic Acids Res 2011, 39:4949-60.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 4949-4960
-
-
Zentner, G.E.1
Saiakhova, A.2
Manaenkov, P.3
Adams, M.D.4
Scacheri, P.C.5
-
147
-
-
25444461727
-
DNA replication initiates at different sites in early and late S phase within human ribosomal RNA genes
-
Coffman FD, He M, Diaz M, Cohen S: DNA replication initiates at different sites in early and late S phase within human ribosomal RNA genes. Cell Cycle 2005, 4:1223-6.
-
(2005)
Cell Cycle
, vol.4
, pp. 1223-1226
-
-
Coffman, F.D.1
He, M.2
Diaz, M.3
Cohen, S.4
-
148
-
-
0038302923
-
Replication of the chicken beta-globin locus: Early-firing origins at the 50 HS4 insulator and the rho- and betaA-globin genes show opposite epigenetic modifications
-
Prioleau M, Gendron M, Hyrien O: Replication of the chicken beta-globin locus: early-firing origins at the 50 HS4 insulator and the rho- and betaA-globin genes show opposite epigenetic modifications. Mol Cell Biol 2003, 23:3536-49.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 3536-3549
-
-
Prioleau, M.1
Gendron, M.2
Hyrien, O.3
-
149
-
-
0027443434
-
The structure and function of yeast ARS elements
-
Newlon CS, Theis JF: The structure and function of yeast ARS elements. Curr Opin Genet Dev 1993, 3:752-8.
-
(1993)
Curr Opin Genet Dev
, vol.3
, pp. 752-758
-
-
Newlon, C.S.1
Theis, J.F.2
-
150
-
-
0030924440
-
The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence
-
Theis JF, Newlon CS: The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence. Proc Natl Acad Sci USA 1997, 94:10786-91.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 10786-10791
-
-
Theis, J.F.1
Newlon, C.S.2
-
151
-
-
3042717854
-
Prediction of Saccharomyces cerevisiae replication origins
-
Breier AM, Chatterji S, Cozzarelli NR: Prediction of Saccharomyces cerevisiae replication origins. Genome Biol 2004, 5:R22.
-
(2004)
Genome Biol
, vol.5
, pp. R22
-
-
Breier, A.M.1
Chatterji, S.2
Cozzarelli, N.R.3
-
152
-
-
84861956582
-
Structure, replication efficiency and fragility of yeast ARS elements
-
Dhar MK, Sehgal S, Kaul S: Structure, replication efficiency and fragility of yeast ARS elements. Res Microbiol 2012, 163:243-53.
-
(2012)
Res Microbiol
, vol.163
, pp. 243-253
-
-
Dhar, M.K.1
Sehgal, S.2
Kaul, S.3
-
153
-
-
0042125189
-
Sequence-independent DNA binding and replication initiation by the human origin recognition complex
-
Vashee S, Cvetic C, Lu W, Simancek P, Kelly TJ, Walter JC: Sequence-independent DNA binding and replication initiation by the human origin recognition complex. Genes Dev 2003, 17:1894-908.
-
(2003)
Genes Dev
, vol.17
, pp. 1894-1908
-
-
Vashee, S.1
Cvetic, C.2
Lu, W.3
Simancek, P.4
Kelly, T.J.5
Walter, J.C.6
-
154
-
-
1842509904
-
DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding
-
Remus D, Beall EL, Botchan MR: DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding. EMBO J 2004, 23:897-907.
-
(2004)
EMBO J
, vol.23
, pp. 897-907
-
-
Remus, D.1
Beall, E.L.2
Botchan, M.R.3
-
155
-
-
0842307053
-
An episomal mammalian replicon: Sequence-independent binding of the origin recognition complex
-
Schaarschmidt D, Baltin J, Stehle IM, Lipps HJ, Knippers R: An episomal mammalian replicon: sequence-independent binding of the origin recognition complex. EMBO J 2004, 23:191-201.
-
(2004)
EMBO J
, vol.23
, pp. 191-201
-
-
Schaarschmidt, D.1
Baltin, J.2
Stehle, I.M.3
Lipps, H.J.4
Knippers, R.5
-
156
-
-
77957168933
-
Eukaryotic DNA replication origins: Many choices for appropriate answers
-
Méchali M: Eukaryotic DNA replication origins: many choices for appropriate answers. Nat Rev Mol Cell Biol 2010, 11:728-38.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 728-738
-
-
Méchali, M.1
-
157
-
-
84870760092
-
DNA replication origins
-
Spring Harb Perspect Biol
-
Leonard AC, Méchali M: DNA replication origins. Cold Spring Harb Perspect Biol 2013, 5:a010116.
-
(2013)
Cold
, vol.5
, pp. a010116
-
-
Leonard, A.C.1
Méchali, M.2
-
158
-
-
84886885078
-
Human origin recognition complex binds preferentially to G-quadruplexpreferable RNA and single-stranded DNA
-
Hoshina S, Yura K, Teranishi H, Kiyasu N, Tominaga A, Kadoma H, Nakatsuka A, Kunichika T, Obuse C, Waga S: Human origin recognition complex binds preferentially to G-quadruplexpreferable RNA and single-stranded DNA. J Biol Chem 2013, 288:30161-71.
-
(2013)
J Biol Chem
, vol.288
, pp. 30161-30171
-
-
Hoshina, S.1
Yura, K.2
Teranishi, H.3
Kiyasu, N.4
Tominaga, A.5
Kadoma, H.6
Nakatsuka, A.7
Kunichika, T.8
Obuse, C.9
Waga, S.10
-
159
-
-
84897385484
-
GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris
-
Liachko I, Youngblood RA, Tsui K, Bubb KL, Queitsch C, Raghuraman MK, Nislow C, Brewer BJ, Dunham MJ: GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris. PLoS Genet 2014, 10: e1004169.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004169
-
-
Liachko, I.1
Youngblood, R.A.2
Tsui, K.3
Bubb, K.L.4
Queitsch, C.5
Raghuraman, M.K.6
Nislow, C.7
Brewer, B.J.8
Dunham, M.J.9
-
160
-
-
84898649803
-
G4 motifs affect origin positioning and efficiency in two vertebrate replicators
-
Valton A, Hassan-Zadeh V, Lema I, Boggetto N, Alberti P, Saintomé C, Riou J, Prioleau M: G4 motifs affect origin positioning and efficiency in two vertebrate replicators. EMBO J 2014, 33:732-46.
-
(2014)
EMBO J
, vol.33
, pp. 732-746
-
-
Valton, A.1
Hassan-Zadeh, V.2
Lema, I.3
Boggetto, N.4
Alberti, P.5
Saintomé, C.6
Riou, J.7
Prioleau, M.8
-
161
-
-
2642647114
-
Initiation of DNA replication at CpG islands in mammalian chromosomes
-
Delgado S, Gómez M, Bird A, Antequera F: Initiation of DNA replication at CpG islands in mammalian chromosomes. EMBO J 1998, 17:2426-35.
-
(1998)
EMBO J
, vol.17
, pp. 2426-2435
-
-
Delgado, S.1
Gómez, M.2
Bird, A.3
Antequera, F.4
-
162
-
-
45749132922
-
DNA replication in early S phase pauses near newly activated origins
-
Frum RA, Chastain PD, Qu P, Cohen SM, Kaufman DG: DNA replication in early S phase pauses near newly activated origins. Cell Cycle 2008, 7:1440-8.
-
(2008)
Cell Cycle
, vol.7
, pp. 1440-1448
-
-
Frum, R.A.1
Chastain, P.D.2
Qu, P.3
Cohen, S.M.4
Kaufman, D.G.5
-
163
-
-
38949184969
-
Overreplication of short DNA regions during S phase in human cells
-
Gómez M, Antequera F: Overreplication of short DNA regions during S phase in human cells. Genes Dev 2008, 22:375-85.
-
(2008)
Genes Dev
, vol.22
, pp. 375-385
-
-
Gómez, M.1
Antequera, F.2
-
164
-
-
0032516695
-
Genetic dissection of a mammalian replicator in the human betaglobin locus
-
Aladjem MI, Rodewald LW, Kolman JL, Wahl GM: Genetic dissection of a mammalian replicator in the human betaglobin locus. Science 1998, 281:1005-9.
-
(1998)
Science
, vol.281
, pp. 1005-1009
-
-
Aladjem, M.I.1
Rodewald, L.W.2
Kolman, J.L.3
Wahl, G.M.4
-
165
-
-
0037371705
-
Multiple functional elements comprise a Mammalian chromosomal replicator
-
Liu G, Malott M, Leffak M: Multiple functional elements comprise a Mammalian chromosomal replicator. Mol Cell Biol 2003, 23:1832-42.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 1832-1842
-
-
Liu, G.1
Malott, M.2
Leffak, M.3
-
166
-
-
2942628210
-
Defined sequence modules and an architectural element cooperate to promote initiation at an ectopic mammalian chromosomal replication origin
-
Altman AL, Fanning E: Defined sequence modules and an architectural element cooperate to promote initiation at an ectopic mammalian chromosomal replication origin. Mol Cell Biol 2004, 24:4138-50.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 4138-4150
-
-
Altman, A.L.1
Fanning, E.2
-
167
-
-
74049163810
-
Decreased replication origin activity in temporal transition regions
-
Guan Z, Hughes CM, Kosiyatrakul S, Norio P, Sen R, Fiering S, Allis CD, Bouhassira EE, Schildkraut CL: Decreased replication origin activity in temporal transition regions. J Cell Biol 2009, 187:623-35.
-
(2009)
J Cell Biol
, vol.187
, pp. 623-635
-
-
Guan, Z.1
Hughes, C.M.2
Kosiyatrakul, S.3
Norio, P.4
Sen, R.5
Fiering, S.6
Allis, C.D.7
Bouhassira, E.E.8
Schildkraut, C.L.9
-
168
-
-
0035146622
-
The Chinese hamster dihydrofolate reductase replication origin beta is active at multiple ectopic chromosomal locations and requires specific DNA sequence elements for activity
-
Altman AL, Fanning E: The Chinese hamster dihydrofolate reductase replication origin beta is active at multiple ectopic chromosomal locations and requires specific DNA sequence elements for activity. Mol Cell Biol 2001, 21:1098-110.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1098-1110
-
-
Altman, A.L.1
Fanning, E.2
-
169
-
-
33845653716
-
Discrete functional elements required for initiation activity of the Chinese hamster dihydrofolate reductase origin beta at ectopic chromosomal sites
-
Gray SJ, Liu G, Altman AL, Small LE, Fanning E: Discrete functional elements required for initiation activity of the Chinese hamster dihydrofolate reductase origin beta at ectopic chromosomal sites. Exp Cell Res 2007, 313:109-20.
-
(2007)
Exp Cell Res
, vol.313
, pp. 109-120
-
-
Gray, S.J.1
Liu, G.2
Altman, A.L.3
Small, L.E.4
Fanning, E.5
-
170
-
-
0035863225
-
Functionally distinct, sequence-specific replicator and origin elements are required for Drosophila chorion gene amplification
-
Lu L, Zhang H, Tower J: Functionally distinct, sequence-specific replicator and origin elements are required for Drosophila chorion gene amplification. Genes Dev 2001, 15:134-46.
-
(2001)
Genes Dev
, vol.15
, pp. 134-146
-
-
Lu, L.1
Zhang, H.2
Tower, J.3
-
171
-
-
2542602914
-
Sequence requirements for function of the Drosophila chorion gene locus ACE3 replicator and ori-beta origin elements
-
Zhang H, Tower J: Sequence requirements for function of the Drosophila chorion gene locus ACE3 replicator and ori-beta origin elements. Development 2004, 131:2089-99.
-
(2004)
Development
, vol.131
, pp. 2089-2099
-
-
Zhang, H.1
Tower, J.2
-
172
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM et al.: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res 2012, 22:1813-31.
-
(2012)
Genome Res
, vol.22
, pp. 1813-1831
-
-
Landt, S.G.1
Marinov, G.K.2
Kundaje, A.3
Kheradpour, P.4
Pauli, F.5
Batzoglou, S.6
Bernstein, B.E.7
Bickel, P.8
Brown, J.B.9
Cayting, P.10
Chen, Y.11
DeSalvo, G.12
Epstein, C.13
Fisher-Aylor, K.I.14
Euskirchen, G.15
Gerstein, M.16
Gertz, J.17
Hartemink, A.J.18
Hoffman, M.M.19
Iyer, V.R.20
Jung, Y.L.21
Karmakar, S.22
Kellis, M.23
Kharchenko, P.V.24
Li, Q.25
Liu, T.26
Liu, X.S.27
Ma, L.28
Milosavljevic, A.29
Myers, R.M.30
more..
|