-
1
-
-
50149084043
-
Double-strand breaks associated with repetitive DNA can reshape the genome
-
Argueso J.L., Westmoreland J., Mieczkowski P.A., Gawel M., Petes T.D., Resnick M.A. Double-strand breaks associated with repetitive DNA can reshape the genome. Proc. Natl. Acad. Sci. USA 2008, 105:11845-11850.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 11845-11850
-
-
Argueso, J.L.1
Westmoreland, J.2
Mieczkowski, P.A.3
Gawel, M.4
Petes, T.D.5
Resnick, M.A.6
-
2
-
-
0026607331
-
ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex
-
Bell S.P., Stillman B. ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature 1992, 357:128-134.
-
(1992)
Nature
, vol.357
, pp. 128-134
-
-
Bell, S.P.1
Stillman, B.2
-
3
-
-
0035997368
-
DNA replication in eukaryotic cells
-
Bell S.P., Dutta A. DNA replication in eukaryotic cells. Annu. Rev. Biochem. 2002, 71:333-374.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 333-374
-
-
Bell, S.P.1
Dutta, A.2
-
4
-
-
0035084333
-
Where it all starts: eukaryotic origins of DNA replication
-
Bielinsky A.K., Gerbi S.A. Where it all starts: eukaryotic origins of DNA replication. J. Cell Sci. 2001, 114:643-651.
-
(2001)
J. Cell Sci.
, vol.114
, pp. 643-651
-
-
Bielinsky, A.K.1
Gerbi, S.A.2
-
5
-
-
33751061774
-
The spatial arrangement of ORC binding modules determines the functionality of replication origins in budding yeast
-
Bolon Y.T., Bielinsky A.K. The spatial arrangement of ORC binding modules determines the functionality of replication origins in budding yeast. Nucleic Acids Res. 2006, 34:5069-5080.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5069-5080
-
-
Bolon, Y.T.1
Bielinsky, A.K.2
-
6
-
-
0023361047
-
Analysis of DNA sequences homologous with the ARS core consensus in Saccharomyces cerevisiae
-
Bouton A.H., Stirling V.B., Smith M.M. Analysis of DNA sequences homologous with the ARS core consensus in Saccharomyces cerevisiae. Yeast 1987, 3:107-115.
-
(1987)
Yeast
, vol.3
, pp. 107-115
-
-
Bouton, A.H.1
Stirling, V.B.2
Smith, M.M.3
-
8
-
-
0027731437
-
Initiation at closely spaced replication origins in a yeast chromosome
-
Brewer B.J., Fangman W.L. Initiation at closely spaced replication origins in a yeast chromosome. Science 1993, 262:1728-1731.
-
(1993)
Science
, vol.262
, pp. 1728-1731
-
-
Brewer, B.J.1
Fangman, W.L.2
-
9
-
-
0025319941
-
Isolation and nucleotide sequence of an autonomously replicating sequence (ARS) element functional in Candida albicans and Saccharomyces cerevisiae
-
Cannon R.D., Jenkinson H.F., Shepherd M.G. Isolation and nucleotide sequence of an autonomously replicating sequence (ARS) element functional in Candida albicans and Saccharomyces cerevisiae. Mol. Gen. Genet. 1990, 221:210-218.
-
(1990)
Mol. Gen. Genet.
, vol.221
, pp. 210-218
-
-
Cannon, R.D.1
Jenkinson, H.F.2
Shepherd, M.G.3
-
10
-
-
0021705184
-
Deletion mutations affecting autonomously replicating sequence ARS1 of Saccharomyces cerevisiae
-
Celniker S., Sweder T., Srienc F., Bailey J., Campbell J. Deletion mutations affecting autonomously replicating sequence ARS1 of Saccharomyces cerevisiae. Mol. Cell. Biol. 1984, 4:2455-2466.
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 2455-2466
-
-
Celniker, S.1
Sweder, T.2
Srienc, F.3
Bailey, J.4
Campbell, J.5
-
11
-
-
0037178723
-
ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones
-
Cha R.S., Kleckner N. ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones. Science 2002, 297:602-606.
-
(2002)
Science
, vol.297
, pp. 602-606
-
-
Cha, R.S.1
Kleckner, N.2
-
12
-
-
49449103939
-
Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site
-
Chang F.J., Theis J.F., Miller J., Nieduszynski C.A., Newlon C.A., Weinreich M. Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site. Mol. Cell. Biol. 2008, 28:5071-5081.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 5071-5081
-
-
Chang, F.J.1
Theis, J.F.2
Miller, J.3
Nieduszynski, C.A.4
Newlon, C.A.5
Weinreich, M.6
-
13
-
-
4344644552
-
Mapping subunit location on the Saccharomyces cerevisiae origin recognition complex free and bound to DNA using a novel nanoscale biopointer
-
Chastain P.D., Bowers J.L., Lee D.G., Bell S.P., Griffith J.D. Mapping subunit location on the Saccharomyces cerevisiae origin recognition complex free and bound to DNA using a novel nanoscale biopointer. J. Biol. Chem. 2004, 279:36354-36362.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 36354-36362
-
-
Chastain, P.D.1
Bowers, J.L.2
Lee, D.G.3
Bell, S.P.4
Griffith, J.D.5
-
14
-
-
0038724989
-
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
-
Cliften P., Sudarsanam P., Desikan A., Fulton L., Fulton B., Majors J., Waterston R., Cohen B.A., Johnston M. Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 2003, 301:71-76.
-
(2003)
Science
, vol.301
, pp. 71-76
-
-
Cliften, P.1
Sudarsanam, P.2
Desikan, A.3
Fulton, L.4
Fulton, B.5
Majors, J.6
Waterston, R.7
Cohen, B.A.8
Johnston, M.9
-
15
-
-
2442474385
-
Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae
-
Colson I., Delneri D., Oliver S.G. Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae. EMBO Rep. 2004, 5:392-398.
-
(2004)
EMBO Rep.
, vol.5
, pp. 392-398
-
-
Colson, I.1
Delneri, D.2
Oliver, S.G.3
-
16
-
-
65349156333
-
The selfish yeast plasmid uses the nuclear motor Kip1p but not Cin8p for its localization and equal segregation
-
Cui H., Ghosh S., Jayaram M. The selfish yeast plasmid uses the nuclear motor Kip1p but not Cin8p for its localization and equal segregation. J. Cell Biol. 2009, 185:251-264.
-
(2009)
J. Cell Biol.
, vol.185
, pp. 251-264
-
-
Cui, H.1
Ghosh, S.2
Jayaram, M.3
-
18
-
-
34347346075
-
Linear derivatives of Saccharomyces cerevisiae chromosome III can be maintained in the absence of autonomously replicating sequence elements
-
Dershowitz A., Snyder M., Sbia M., Skurnick J.H., Ong L.Y., Newlon C.S. Linear derivatives of Saccharomyces cerevisiae chromosome III can be maintained in the absence of autonomously replicating sequence elements. Mol. Cell. Biol. 2007, 27:4652-4663.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 4652-4663
-
-
Dershowitz, A.1
Snyder, M.2
Sbia, M.3
Skurnick, J.H.4
Ong, L.Y.5
Newlon, C.S.6
-
19
-
-
0030113471
-
Large, complex modular structure of a fission yeast DNA replication origin
-
Dubey D.D., Kim S., Todorov I.T., Huberman H.A. Large, complex modular structure of a fission yeast DNA replication origin. Curr. Biol. 1996, 6:467-473.
-
(1996)
Curr. Biol.
, vol.6
, pp. 467-473
-
-
Dubey, D.D.1
Kim, S.2
Todorov, I.T.3
Huberman, H.A.4
-
20
-
-
0037058930
-
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
-
Dunham M.J., Badrane H., Ferea T., Adams J., Brown P.O., Rosenzweig F., Botstein D. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 2002, 99:16144-16149.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16144-16149
-
-
Dunham, M.J.1
Badrane, H.2
Ferea, T.3
Adams, J.4
Brown, P.O.5
Rosenzweig, F.6
Botstein, D.7
-
21
-
-
53549098548
-
Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
-
Dunn B., Sherlock G. Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res. 2008, 18:1610-1623.
-
(2008)
Genome Res.
, vol.18
, pp. 1610-1623
-
-
Dunn, B.1
Sherlock, G.2
-
22
-
-
0025719475
-
Activation of replication origins within yeast chromosomes
-
Fangman W.L., Brewer B.J. Activation of replication origins within yeast chromosomes. Annu. Rev. Cell. Biol. 1991, 7:375-402.
-
(1991)
Annu. Rev. Cell. Biol.
, vol.7
, pp. 375-402
-
-
Fangman, W.L.1
Brewer, B.J.2
-
23
-
-
33645152790
-
Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication
-
Feng W., Collingwood D., Boeck M.E., Fox L.A., Alvino G.M., Fangman W.L., Raghuraman M.K., Brewer B.J. Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat. Cell. Biol. 2006, 8:148-155.
-
(2006)
Nat. Cell. Biol.
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
Alvino, G.M.5
Fangman, W.L.6
Raghuraman, M.K.7
Brewer, B.J.8
-
24
-
-
0034713383
-
Chromosomal evolution in Saccharomyces
-
Fischer G., James S.A., Roberts I.N., Oliver S.G., Louis E.J. Chromosomal evolution in Saccharomyces. Nature 2000, 405:451-454.
-
(2000)
Nature
, vol.405
, pp. 451-454
-
-
Fischer, G.1
James, S.A.2
Roberts, I.N.3
Oliver, S.G.4
Louis, E.J.5
-
25
-
-
34547681831
-
Chromosome fragility: molecular mechanisms and cellular consequences
-
Freudenreich C.H. Chromosome fragility: molecular mechanisms and cellular consequences. Front. Biosci. 2007, 12:4911-4924.
-
(2007)
Front. Biosci.
, vol.12
, pp. 4911-4924
-
-
Freudenreich, C.H.1
-
26
-
-
77449152577
-
Yeast cohesin complex embraces 2 micron plasmid sisters in a tri-linked catenane complex
-
Ghosh S.K., Huang C.C., Hajra S., Jayaram M. Yeast cohesin complex embraces 2 micron plasmid sisters in a tri-linked catenane complex. Nucleic Acids Res. 2010, 38:570-584.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 570-584
-
-
Ghosh, S.K.1
Huang, C.C.2
Hajra, S.3
Jayaram, M.4
-
27
-
-
0036591890
-
Replication timing and transcriptional control: beyond cause and effect
-
Gilbert D.M. Replication timing and transcriptional control: beyond cause and effect. Curr. Opin. Cell. Biol. 2002, 14:377-383.
-
(2002)
Curr. Opin. Cell. Biol.
, vol.14
, pp. 377-383
-
-
Gilbert, D.M.1
-
28
-
-
0024120558
-
Autonomous replication and addition of telomere like sequences to DNA microinjected into paramecium Tetraurelia macronuclei
-
Gilley D., Preer J.R., Aufderheide K.J., Polisky B. Autonomous replication and addition of telomere like sequences to DNA microinjected into paramecium Tetraurelia macronuclei. Mol. Cell. Biol. 1988, 8:4765-4772.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 4765-4772
-
-
Gilley, D.1
Preer, J.R.2
Aufderheide, K.J.3
Polisky, B.4
-
30
-
-
47949107047
-
Intrinsically bent DNA in replication origins and gene promoters
-
Gimenes F., Takeda K.I., Fiorini A., Gouveia F.S., Fernandez M.A. Intrinsically bent DNA in replication origins and gene promoters. Genet. Mol. Res. 2008, 7:549-558.
-
(2008)
Genet. Mol. Res.
, vol.7
, pp. 549-558
-
-
Gimenes, F.1
Takeda, K.I.2
Fiorini, A.3
Gouveia, F.S.4
Fernandez, M.A.5
-
31
-
-
33750438774
-
Genome-wide characterization of fission yeast DNA replication origins
-
Heichinger C., Penkett C., Bahler J., Nurse P. Genome-wide characterization of fission yeast DNA replication origins. EMBO J. 2006, 25:5171-5179.
-
(2006)
EMBO J.
, vol.25
, pp. 5171-5179
-
-
Heichinger, C.1
Penkett, C.2
Bahler, J.3
Nurse, P.4
-
32
-
-
0043122913
-
WEB-THERMODYN: sequence analysis software for profiling DNA helical stability
-
Huang Y., Kowalski D. WEB-THERMODYN: sequence analysis software for profiling DNA helical stability. Nucleic Acids Res. 2003, 31:3819-3821.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3819-3821
-
-
Huang, Y.1
Kowalski, D.2
-
33
-
-
0023719027
-
Close association of a DNA replication origin and an ARS element on chromosome III of the yeast, Saccharomyces cerevisiae
-
Huberman J.A., Zhu J.G., Davis L.R., Newlon C.S. Close association of a DNA replication origin and an ARS element on chromosome III of the yeast, Saccharomyces cerevisiae. Nucleic Acids Res. 1988, 16:6373-6384.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 6373-6384
-
-
Huberman, J.A.1
Zhu, J.G.2
Davis, L.R.3
Newlon, C.S.4
-
34
-
-
27744474280
-
Isolation and structural analysis of efficient autonomously replicating sequences (ARS) of the yeast Candida utilis
-
Iwakiri R., Eguchi S., Noda Y., Adachi H., Yoda K. Isolation and structural analysis of efficient autonomously replicating sequences (ARS) of the yeast Candida utilis. Yeast 2005, 22:1049-1060.
-
(2005)
Yeast
, vol.22
, pp. 1049-1060
-
-
Iwakiri, R.1
Eguchi, S.2
Noda, Y.3
Adachi, H.4
Yoda, K.5
-
35
-
-
0025308608
-
The basidiomycete Lentinus edodes linear mitochondrial DNA plasmid contains a segment exhibiting a high autonomously replicating sequence activity in Saccharomyces cerevisiae
-
Katayose Y., Kajiwara S., Shishido K. The basidiomycete Lentinus edodes linear mitochondrial DNA plasmid contains a segment exhibiting a high autonomously replicating sequence activity in Saccharomyces cerevisiae. Nucleic Acids Res. 1996, 18:1395-1400.
-
(1996)
Nucleic Acids Res.
, vol.18
, pp. 1395-1400
-
-
Katayose, Y.1
Kajiwara, S.2
Shishido, K.3
-
36
-
-
42149154858
-
Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination
-
Kawauchi J., Mischo H., Braglia P., Rondon A., Proudfoot N.J. Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination. Genes Dev. 2008, 22:1082-1092.
-
(2008)
Genes Dev.
, vol.22
, pp. 1082-1092
-
-
Kawauchi, J.1
Mischo, H.2
Braglia, P.3
Rondon, A.4
Proudfoot, N.J.5
-
37
-
-
1942452749
-
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
-
Kellis M., Birren B.W., Lander E.S. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 2004, 428:617-624.
-
(2004)
Nature
, vol.428
, pp. 617-624
-
-
Kellis, M.1
Birren, B.W.2
Lander, E.S.3
-
38
-
-
0037178722
-
Maintenance of genome stability in Saccharomyces cerevisiae
-
Kolodner R.D., Putnam C.D., Myung K. Maintenance of genome stability in Saccharomyces cerevisiae. Science 2002, 297:552-557.
-
(2002)
Science
, vol.297
, pp. 552-557
-
-
Kolodner, R.D.1
Putnam, C.D.2
Myung, K.3
-
39
-
-
0037107423
-
Site-specific ORC binding, pre-replication complex assembly and DNA synthesis at Schizosaccharomyces pombe replication origins
-
Kong D., DePamphilis M.L. Site-specific ORC binding, pre-replication complex assembly and DNA synthesis at Schizosaccharomyces pombe replication origins. EMBO J. 2002, 21:5567-5576.
-
(2002)
EMBO J.
, vol.21
, pp. 5567-5576
-
-
Kong, D.1
DePamphilis, M.L.2
-
40
-
-
33646194956
-
Stability of large segmental duplications in the yeast genome
-
Koszul R., Dujon B., Fischer G. Stability of large segmental duplications in the yeast genome. Genetics 2006, 172:2211-2222.
-
(2006)
Genetics
, vol.172
, pp. 2211-2222
-
-
Koszul, R.1
Dujon, B.2
Fischer, G.3
-
41
-
-
34250091610
-
Retention of autonomous replicating plasmids in cultured Drosophila cells
-
Kurata N., Marunouchi T. Retention of autonomous replicating plasmids in cultured Drosophila cells. Mol. Gen. Genet. 1988, 213:359-363.
-
(1988)
Mol. Gen. Genet.
, vol.213
, pp. 359-363
-
-
Kurata, N.1
Marunouchi, T.2
-
42
-
-
0032929162
-
DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences
-
Lascaris R.F., Mager W.H., Planta R.J. DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences. Bioinformatics 1999, 15:267-277.
-
(1999)
Bioinformatics
, vol.15
, pp. 267-277
-
-
Lascaris, R.F.1
Mager, W.H.2
Planta, R.J.3
-
43
-
-
14844286404
-
Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites
-
Lemoine F.J., Degtyareva N.P., Lobachev K., Petes T.D. Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites. Cell 2005, 120:587-598.
-
(2005)
Cell
, vol.120
, pp. 587-598
-
-
Lemoine, F.J.1
Degtyareva, N.P.2
Lobachev, K.3
Petes, T.D.4
-
44
-
-
50249159576
-
Reduced levels of DNA polymerase delta induce chromosome fragile site instability in yeast
-
Lemoine F.J., Degtyareva N.P., Kokoska R.J., Petes T.D. Reduced levels of DNA polymerase delta induce chromosome fragile site instability in yeast. Mol. Cell. Biol. 2008, 28:5359-5368.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 5359-5368
-
-
Lemoine, F.J.1
Degtyareva, N.P.2
Kokoska, R.J.3
Petes, T.D.4
-
45
-
-
58149110771
-
Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening
-
Li M., Hays F.A., Zurz Z.R., Vuong L., Kelly L., Ho C.M., Robbins R.M., Pieper U., Connell J., Miercke L., Giacomini K., Sali A., Stroud R.M. Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening. J. Mol. Biol. 2010, 385:820-830.
-
(2010)
J. Mol. Biol.
, vol.385
, pp. 820-830
-
-
Li, M.1
Hays, F.A.2
Zurz, Z.R.3
Vuong, L.4
Kelly, L.5
Ho, C.M.6
Robbins, R.M.7
Pieper, U.8
Connell, J.9
Miercke, L.10
Giacomini, K.11
Sali, A.12
Stroud, R.M.13
-
46
-
-
0023806623
-
Organization of replication of ribosomal DNA in Saccharomyces cerevisiae
-
Linskens M.H., Huberman J.A. Organization of replication of ribosomal DNA in Saccharomyces cerevisiae. Mol. Cell. Biol. 1988, 8:4927-4935.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 4927-4935
-
-
Linskens, M.H.1
Huberman, J.A.2
-
47
-
-
21744442744
-
Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in S. cerevisiae
-
Lynch P.J., Fraser H.B., Sevastopoulos E., Rine J., Rusche L.N. Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in S. cerevisiae. Mol. Cell. Biol. 2005, 25:5920-5932.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 5920-5932
-
-
Lynch, P.J.1
Fraser, H.B.2
Sevastopoulos, E.3
Rine, J.4
Rusche, L.N.5
-
48
-
-
0028304671
-
Single-stranded-DNA-binding protein-dependent DNA unwinding of the yeast ARS1 region
-
Matsumoto K., Ishimi Y. Single-stranded-DNA-binding protein-dependent DNA unwinding of the yeast ARS1 region. Mol. Cell. Biol. 1994, 14:4624-4632.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 4624-4632
-
-
Matsumoto, K.1
Ishimi, Y.2
-
49
-
-
0033215366
-
The inefficient replication origin from yeast ribosomal DNA is naturally impaired in the ARS consensus sequence and in DNA unwinding
-
Miller C., Umek R.M., Kowalski D. The inefficient replication origin from yeast ribosomal DNA is naturally impaired in the ARS consensus sequence and in DNA unwinding. Nucleic Acids Res. 1999, 27:3921-3930.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3921-3930
-
-
Miller, C.1
Umek, R.M.2
Kowalski, D.3
-
50
-
-
0036135629
-
Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing
-
Miyake T., Loch C.M., Li R. Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing. Mol. Cell. Biol. 2002, 22:505-516.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 505-516
-
-
Miyake, T.1
Loch, C.M.2
Li, R.3
-
51
-
-
80052203182
-
Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems
-
Morita R., Nakane S., Shimada A., Inoue M., Lino H., Wakamatsu t., Fukui K., Nakagawa N., Masui R., Kuramitsu S. Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems. J. Nucleic Acids 2010, 2010:179594.
-
(2010)
J. Nucleic Acids
, vol.2010
, pp. 179594
-
-
Morita, R.1
Nakane, S.2
Shimada, A.3
Inoue, M.4
Lino, H.5
Wakamatsu, T.6
Fukui, K.7
Nakagawa, N.8
Masui, R.9
Kuramitsu, S.10
-
52
-
-
77957238006
-
Mathematical modelling of whole chromosome replication
-
Moura A.P.S., Retkute R., Hawkins M., Nieduszynski C.A. Mathematical modelling of whole chromosome replication. Nucleic Acids Res. 2010, 38:5623-5633.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5623-5633
-
-
Moura, A.P.S.1
Retkute, R.2
Hawkins, M.3
Nieduszynski, C.A.4
-
53
-
-
0000791476
-
Lengths of chromosomal segments conserved since divergence of man and mouse
-
Nadeau J.H., Taylor B.A. Lengths of chromosomal segments conserved since divergence of man and mouse. Proc. Natl. Acad. Sci. USA 1984, 81:814-818.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 814-818
-
-
Nadeau, J.H.1
Taylor, B.A.2
-
54
-
-
33745264366
-
The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks
-
Narayanan V., Mieczkowski P.A., Kim H.A., Petes T.D., Lobachev K.S. The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks. Cell 2006, 125:1283-1296.
-
(2006)
Cell
, vol.125
, pp. 1283-1296
-
-
Narayanan, V.1
Mieczkowski, P.A.2
Kim, H.A.3
Petes, T.D.4
Lobachev, K.S.5
-
55
-
-
0026548222
-
DNA helical stability accounts for mutational defects in a yeast replication origin
-
Natale D.A., Schubert A.E., Kowalski D. DNA helical stability accounts for mutational defects in a yeast replication origin. Proc. Natl. Acad. Sci. USA 1992, 89:2654-2658.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 2654-2658
-
-
Natale, D.A.1
Schubert, A.E.2
Kowalski, D.3
-
56
-
-
0027443434
-
The structure and function of yeast ARS elements
-
Newlon C.S., Theis J.F. The structure and function of yeast ARS elements. Curr. Opin. Gen. Dev. 1993, 3:752-758.
-
(1993)
Curr. Opin. Gen. Dev.
, vol.3
, pp. 752-758
-
-
Newlon, C.S.1
Theis, J.F.2
-
57
-
-
33746101049
-
Genome-wide identification of replication origins in yeast by comparative genomics
-
Nieduszynski C.A., Knox Y., Donaldson A.D. Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev. 2006, 20:1874-1879.
-
(2006)
Genes Dev.
, vol.20
, pp. 1874-1879
-
-
Nieduszynski, C.A.1
Knox, Y.2
Donaldson, A.D.3
-
58
-
-
33846110760
-
OriDB: a DNA replication origin database
-
Nieduszynski C.A., Hiraga S., Ak P., Benham C.J., Donaldson A.D. OriDB: a DNA replication origin database. Nucleic Acids Res. 2007, 35:D40-D46.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Nieduszynski, C.A.1
Hiraga, S.2
Ak, P.3
Benham, C.J.4
Donaldson, A.D.5
-
59
-
-
52949143512
-
Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms
-
Payen C., Koszul R., Dujon B., Fischer G. Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms. PLoS Genet. 2008, 4:e1000175.
-
(2008)
PLoS Genet.
, vol.4
-
-
Payen, C.1
Koszul, R.2
Dujon, B.3
Fischer, G.4
-
61
-
-
0035812808
-
Replication dynamics of the yeast genome
-
Raghuraman M.K., Winzeler E.A., Collingwood D., Hunt S., Wodicka L., Conway A., Lockhart D.J., Davis R.W., Brewer B.J., Fangman W.L. Replication dynamics of the yeast genome. Science 2001, 294:115-121.
-
(2001)
Science
, vol.294
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
62
-
-
0028928194
-
The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators
-
Rao H., Stillman B. The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. Proc. Natl. Acad. Sci. USA 1995, 92:2224-2228.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2224-2228
-
-
Rao, H.1
Stillman, B.2
-
63
-
-
68649086169
-
The dual role of autonomously replicating sequences as origins of replication and as silencers
-
Rehman M.A., Yankulov K.A. The dual role of autonomously replicating sequences as origins of replication and as silencers. Curr. Genet. 2009, 55:357-363.
-
(2009)
Curr. Genet.
, vol.55
, pp. 357-363
-
-
Rehman, M.A.1
Yankulov, K.A.2
-
64
-
-
77649234374
-
Fragile genomic sites are associated with origins of replication
-
Rienzi S., Collingwood D., Raghuraman M.K., Brewer B.J. Fragile genomic sites are associated with origins of replication. Genome Biol. Evol. 2009, 2009:350-363.
-
(2009)
Genome Biol. Evol.
, vol.2009
, pp. 350-363
-
-
Rienzi, S.1
Collingwood, D.2
Raghuraman, M.K.3
Brewer, B.J.4
-
65
-
-
0037636027
-
The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae
-
Rusche L.N., Kirchmaier A.L., Rine J. The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae. Annu. Rev. Biochem. 2003, 72:481-516.
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 481-516
-
-
Rusche, L.N.1
Kirchmaier, A.L.2
Rine, J.3
-
66
-
-
0036598803
-
Chromosomal distributions of breakpoints in cancer, infertility, and evolution
-
Sankoff D., Deneault M., Turbis P., Allen C. Chromosomal distributions of breakpoints in cancer, infertility, and evolution. Theor. Popul. Biol. 2002, 61:497-501.
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 497-501
-
-
Sankoff, D.1
Deneault, M.2
Turbis, P.3
Allen, C.4
-
67
-
-
77649236880
-
Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches
-
Scheper A., Papior P. Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches. Chromosome Res. 2010, 18:863-877.
-
(2010)
Chromosome Res.
, vol.18
, pp. 863-877
-
-
Scheper, A.1
Papior, P.2
-
68
-
-
77949275845
-
Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX
-
Szilard R.K., Jacques P.E., Laramee L., Cheng B., Galicia S., Bataille A.R., Yeung M., Mendez M., Bergeron M., Robert F., Durocher D. Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX. Nat. Str. Mol. Biol. 2010, 17:299-306.
-
(2010)
Nat. Str. Mol. Biol.
, vol.17
, pp. 299-306
-
-
Szilard, R.K.1
Jacques, P.E.2
Laramee, L.3
Cheng, B.4
Galicia, S.5
Bataille, A.R.6
Yeung, M.7
Mendez, M.8
Bergeron, M.9
Robert, F.10
Durocher, D.11
-
69
-
-
0042665854
-
DnaA Protein of Escherichia coli: oligomerization at the E. coli chromosomal origin is required for initiation and involves specific N-terminal amino acids
-
Simmons L.A., Felczak M., Kaguni J.M. DnaA Protein of Escherichia coli: oligomerization at the E. coli chromosomal origin is required for initiation and involves specific N-terminal amino acids. Mol. Microbiol. 2003, 49:849-858.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 849-858
-
-
Simmons, L.A.1
Felczak, M.2
Kaguni, J.M.3
-
70
-
-
0018671664
-
Isolation and characterisation of a yeast chromosomal replicator
-
Stinchcomb D.T., Struhl K., Davis R.W. Isolation and characterisation of a yeast chromosomal replicator. Nature 1979, 282:39-43.
-
(1979)
Nature
, vol.282
, pp. 39-43
-
-
Stinchcomb, D.T.1
Struhl, K.2
Davis, R.W.3
-
71
-
-
0035251778
-
Supercoiling unwinds two-micrometer plasmid yeast DNA at the origin of replication
-
Stoynov S., Dolapchiev L.B. Supercoiling unwinds two-micrometer plasmid yeast DNA at the origin of replication. Int. J. Biochem. Cell. Biol. 2001, 33:175-180.
-
(2001)
Int. J. Biochem. Cell. Biol.
, vol.33
, pp. 175-180
-
-
Stoynov, S.1
Dolapchiev, L.B.2
-
72
-
-
0028143041
-
Domain B of ARS307 contains two functional elements and contributes to chromosomal replication origin function
-
Theis J.F., Newlon C.S. Domain B of ARS307 contains two functional elements and contributes to chromosomal replication origin function. Mol. Cell. Biol. 1994, 14:7652-7659.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 7652-7659
-
-
Theis, J.F.1
Newlon, C.S.2
-
73
-
-
0024085392
-
Isolation and characterization of an autonomously replicating sequence from Ustilago maydis
-
Tsukuda T., Carleton S., Fotheringham S., Holloman W.K. Isolation and characterization of an autonomously replicating sequence from Ustilago maydis. Mol. Cell. Biol. 1988, 8:3703-3709.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 3703-3709
-
-
Tsukuda, T.1
Carleton, S.2
Fotheringham, S.3
Holloman, W.K.4
-
74
-
-
0032881250
-
MCM proteins in DNA replication
-
Tye B.K. MCM proteins in DNA replication. Annu. Rev. Biochem. 1999, 68:649-686.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 649-686
-
-
Tye, B.K.1
-
75
-
-
0024297539
-
The ease of DNA unwinding as a determinant of initiation at yeast replication origins
-
Umek R.M., Kowalski D. The ease of DNA unwinding as a determinant of initiation at yeast replication origins. Cell 1988, 52:559-567.
-
(1988)
Cell
, vol.52
, pp. 559-567
-
-
Umek, R.M.1
Kowalski, D.2
-
76
-
-
2442520029
-
Localization and sequence analysis of chloroplast DNA sequences of Chlamydomonas reinhardtii that promote autonomous replication in yeast
-
Vallet I.M., Rahire M., Rochaix J.D. Localization and sequence analysis of chloroplast DNA sequences of Chlamydomonas reinhardtii that promote autonomous replication in yeast. EMBO J. 1984, 3:415-421.
-
(1984)
EMBO J.
, vol.3
, pp. 415-421
-
-
Vallet, I.M.1
Rahire, M.2
Rochaix, J.D.3
-
77
-
-
0141479064
-
Stable propagation of 'selfish' genetic elements
-
Velmurugan S., Mehta S., Uzri D., Jayaram M. Stable propagation of 'selfish' genetic elements. J. Biosci. 2003, 28:623-636.
-
(2003)
J. Biosci.
, vol.28
, pp. 623-636
-
-
Velmurugan, S.1
Mehta, S.2
Uzri, D.3
Jayaram, M.4
-
79
-
-
0034786329
-
Transformation systems of non-Saccharomyces yeasts
-
Wang T.T., Choi Y.J., Lee B.H. Transformation systems of non-Saccharomyces yeasts. Crit. Rev. Biotechnol. 2001, 21:177-218.
-
(2001)
Crit. Rev. Biotechnol.
, vol.21
, pp. 177-218
-
-
Wang, T.T.1
Choi, Y.J.2
Lee, B.H.3
-
80
-
-
13444262282
-
The humanization of N-glycosylation pathways in yeast
-
Wildt S., Gerngross T. The humanization of N-glycosylation pathways in yeast. Nat. Rev. Microbiol. 2005, 3:119-128.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 119-128
-
-
Wildt, S.1
Gerngross, T.2
-
81
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe K.H., Shields D.C. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 1997, 387:708-713.
-
(1997)
Nature
, vol.387
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
82
-
-
0035861492
-
Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins
-
Wyrick J.J., Aparicio J.G., Chen T., Barnett J.D., Jennings E.G., Young R.A., Bell S.P., Aparicio O.M. Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 2001, 294:2357-2360.
-
(2001)
Science
, vol.294
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
83
-
-
0036668464
-
Mapping of early firing origins on a replication profile of budding yeast
-
Yabuki N., Terashima H., Kitada K. Mapping of early firing origins on a replication profile of budding yeast. Genes Cells 2002, 7:781-789.
-
(2002)
Genes Cells
, vol.7
, pp. 781-789
-
-
Yabuki, N.1
Terashima, H.2
Kitada, K.3
-
84
-
-
0032788462
-
Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of Saccharomyces cerevisiae and S. carlsbergenesis
-
Yang C., Theis J.F., Newlon C.S. Conservation of ARS elements and chromosomal DNA replication origins on chromosomes III of Saccharomyces cerevisiae and S. carlsbergenesis. Genetics 1999, 152:933-941.
-
(1999)
Genetics
, vol.152
, pp. 933-941
-
-
Yang, C.1
Theis, J.F.2
Newlon, C.S.3
-
85
-
-
33846694307
-
Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae
-
Yarragudi A., Parfrey L.W., Morse R.H. Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae. Nucleic Acids Res. 2007, 35:193-202.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 193-202
-
-
Yarragudi, A.1
Parfrey, L.W.2
Morse, R.H.3
|