Sequence requirements for function of the Drosophila chorion gene locus ACE3 replicator and ori-β origin elements

Development

Volumn 131, Issue 9, 2004, Pages 2089-2099

  Zhang, Hongjun ^a   Tower, John ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

Amplification; Chiffon; Dbf4; DNA replication; Drosophila; ORC

Indexed keywords

ADENINE; DNA; THYMINE;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ANALYSIS; ARTICLE; CHROMATIN STRUCTURE; CHROMOSOME ANALYSIS; CONTROLLED STUDY; DNA FLANKING REGION; DNA REPLICATION; DROSOPHILA; GENE AMPLIFICATION; GENE CONTROL; GENE DELETION; GENE FUNCTION; GENE LOCUS; GENE MAPPING; GENE MUTATION; GENE REPLICATION; GENE SEQUENCE; GENETIC IDENTIFICATION; INSECT GENETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN LOCALIZATION; SACCHAROMYCES CEREVISIAE; TRANSGENE;

ANIMALS; ANIMALS, GENETICALLY MODIFIED; BASE SEQUENCE; CHORION; CHROMOSOMES; DNA REPLICATION; DNA-BINDING PROTEINS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EGG PROTEINS; MULTIGENE FAMILY; ORIGIN RECOGNITION COMPLEX; REPLICATION ORIGIN;

HEXAPODA; INSECTA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 2542602914     PISSN: 09501991     EISSN: None     Source Type: Journal    
DOI: 10.1242/dev.01064     Document Type: Article

References (39)

1. Asano, M. and Wharton, R. P. (1999). E2F mediates developmental and cell cycle regulation of ORC1 in Drosophila. EMBO J. 18, 2435-2448.
2. Austin, R. J., Orr-Weaver, T. L. and Bell, S. P. (1999). Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element. Genes Dev. 13, 2639-2649.
3. Beall, E. L., Manak, J. R., Zhou, S., Bell, M., Lipsick, J. S. and Botchan, M. R. (2002). Role for a Drosophila Myb-containing protein complex in site-specific DNA replication. Nature 420, 833-837.
4. Bell, S. P. (2002). The origin recognition complex: from simple origins to complex functions. Genes Dev. 16, 659-672.
5. Bell, S. P. and Dutta, A. (2002). DNA replication in eukaryotic cells. Annu. Rev. Biochem. 71, 333-374.
6. Bielinsky, A. K., Blitzblau, H., Beall, E. L., Ezrokhi, M., Smith, H. S., Botchan, M. R. and Gerbi, S. A. (2001). Origin recognition complex binding to a metazoan replication origin. Curr. Biol. 11, 1427-1431.
7. Bielinsky, A. K. and Gerbi, S. A. (2001). Where it all starts: eukaryotic origins of DNA replication. J. Cell Sci. 114, 643-651.
8. Bosco, G., Du, W. and Orr-Weaver, T. L. (2001). DNA replication control through interaction of E2F-RB and the origin recognition complex. Nat. Cell Biol. 3, 289-295.
9. Calvi, B. R. and Spradling, A. C. (1999). Chorion gene amplification in Drosophila: A model for metazoan origins of DNA replication and S-phase control. Methods 18, 407-417.
10. Calvi, B. R., Lilly, M. A. and Spradling, A. C. (1998). Cell cycle control of chorion gene amplification. Genes Dev. 12, 734-744.
11. Chesnokov, I., Gossen, M., Remus, D. and Botchan, M. (1999). Assembly of functionally active Drosophila origin recognition complex from recombinant proteins. Genes Dev. 13, 1289-1296.
12. Claycomb, J. M., MacAlpine, D. M., Evans, J. G., Bell, S. P. and Orr-Weaver, T. L. (2002). Visualization of replication initiation and elongation in Drosophila. J. Cell Biol. 159, 225-236.
13. Dawid, I. B., Wellauer, P. K. and Long, E. O. (1978). Ribosomal DNA in D. melanogaster. I. Isolation and characterization of cloned fragments. J. Mol. Biol. 126, 749-768.
14. deCicco, D. V. and Spradling, A. C. (1984). Localization of a cis-acting element responsible for the developmentally regulated amplification of Drosophila chorion genes. Cell 38, 45-54.
15. Delidakis, C. and Kafatos, F. C. (1989). Amplification enhancers and replication origins in the autosomal chorion gene cluster of Drosophila. EMBO J. 8, 891-901.
16. Gerasimova, T. I. and Corces, V. G. (2001). Chromatin insulators and boundaries: effects on transcription and nuclear organization. Annu. Rev. Genet. 35, 193-208.
17. Gossen, M., Pak, D. T., Hansen, S. K., Acharya, J. K. and Botchan, M. R. (1995). A Drosophila homolog of the yeast origin recognition complex. Science 270, 1674-1677.
18. Heck, M. M. S. and Spradling, A. C. (1990). Multiple replication origins are used during Drosophila chorion gene amplification. J. Cell Biol. 110, 903-914.
19. Landis, G. and Tower, J. (1999). The Drosophila chiffon gene is required for chorion gene amplification, and is related to the yeast Dbf4 regulator of DNA replication and cell cycle. Development 126, 4281-4293.
20. Landis, G., Kelley, R., Spradling, A. C. and Tower, J. (1997). The k43 gene, required for chorion gene amplification and diploid cell chromosome replication, encodes the Drosophila homolog of yeast origin recognition complex subunit 2. Proc. Natl. Acad. Sci. USA 94, 3888-3892.
21. Levine, J. and Spradling, A. C. (1985). DNA sequence of a 3.8 kilobase pair region controlling Drosophila chorion gene amplification. Chromosoma 92, 136-142.
22. Lilly, M. A. and Spradling, A. C. (1996). The Drosophila endocycle is controlled by Cyclin E and lacks a checkpoint ensuring S-phase completion. Genes Dev. 10, 2514-2526.
23. Lu, L. and Tower, J. (1997). A transcriptional insulator element, the su(Hw) binding site, protects a chromosomal DNA replication origin from position effects. Mol. Cell. Biol. 17, 2202-2206.
24. Lu, L., Zhang, H. and Tower, J. (2001). Functionally distinct, sequence-specific replicator and origin elements are required for Drosophila chorion gene amplification. Genes Dev. 15, 134-146.
25. Marahrens, Y. and Stillman, B. (1992). A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science 255, 817-823.
26. Orr, W., Komitopoulou, K. and Kafatos, F. C. (1984). Mutants suppressing in trans chorion gene amplification in Drosophila. Proc. Natl. Acad. Sci. USA 81, 3773-3777.
27. Orr-Weaver, Y. L., Johnston, C. G. and Spradling, A. C. (1989). The role of ACE3 in Drosophila chorion gene amplification. EMBO J. 8, 4153-4162.
28. Osheim, Y. N., Miller, O. L. and Beyer, A. L. (1988). Visualization of Drosophila melanogaster chorion genes undergoing amplification. Mol. Cell. Biol. 8, 2811-2821.
29. Quinn, L. M., Herr, A., McGarry, T. J. and Richardson, H. (2001). The Drosophila Geminin homolog: roles for Geminin in limiting DNA replication, in anaphase and in neurogenesis. Genes Dev. 15, 2741-2754.
30. Royzman, I. and Orr-Weaver, T. L. (1998). S phase and differential DNA replication during Drosophila oogenesis. Genes Cells 3, 767-776.
31. Royzman, I., Austin, R. J., Bosco, G., Bell, S. P. and Orr-Weaver, T. L. (1999). ORC localization in Drosophila follicle cells and the effects of mutations in dE2F and dDP. Genes Dev. 13, 827-840.
32. Rubin, G. M. and Spradling, A. C. (1982). Genetic transformation of Drosophila with transposable element vectors. Science 218, 348-353.
33. Schupbach, T. and Wieschaus, E. (1991). Female sterile mutations on the second chromosome of Drosophila melanogaster. II. Mutations blocking oogenesis or altering egg morphology. Genetics 129, 1119-1136.
34. Schwed, G., May, N., Pechersky, Y. and Calvi, B. R. (2002). Drosophila minichromosome maintenance 6 is required for chorion gene amplification and genomic replication. Mol. Biol. Cell 13, 607-620.
35. Spradling, A. C. and Leys, E. (1988). Slow replication fork movement during Drosophila chorion gene amplification. In Cancer Cells 6/Eukaryotic DNA Replication, pp. 305-309. Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
36. Spradling, A. C. and Mahowald, A. P. (1981). A chromosome inversion alters the pattern of specific DNA replication in Drosophila follicle cells. Cell 27, 203-209.
37. Stillman, B. (1993). Replicator renaissance. Nature 366, 506-507.
38. Swimmer, C., Fenerjian, M. G., Martinez-Cruzado, J. C. and Kafatos, K. C. (1990). Evolution of the autosomal chorion gene cluster in Drosophila III. Comparison of the s18 gene in evolutionarily distant species and interspecific control of chorion gene amplification. J. Mol. Biol. 215, 225-235.
39. Whittaker, A. J., Royzman, I. and Orr-Weaver, T. L. (2000). Drosophila double parked: a conserved essential replication protein that colocalizes with the origin recognition complex an links DNA replication with mitosis and the down-regulation of S phase transcripts. Genes Dev. 14, 1765-1776.