-
1
-
-
0024977414
-
Five intermediate complexes in transcription initiation by RNA polymerase II
-
Buratowski, S., Hahn, S., Guarente, L. & Sharp, P. A. Five intermediate complexes in transcription initiation by RNA polymerase II. Cell 56, 549-561 (1989).
-
(1989)
Cell
, vol.56
, pp. 549-561
-
-
Buratowski, S.1
Hahn, S.2
Guarente, L.3
Sharp, P.A.4
-
2
-
-
0027197725
-
General initiation factors for RNA polymerase II
-
Conaway, R. C. & Conaway, J. W. General initiation factors for RNA polymerase II. Annu. Rev. Biochem. 62, 161-190 (1993).
-
(1993)
Annu. Rev. Biochem
, vol.62
, pp. 161-190
-
-
Conaway, R.C.1
Conaway, J.W.2
-
3
-
-
0030249381
-
The role of general initiation factors in transcription by RNA polymerase II
-
Roeder, R. G. The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21, 327-335 (1996).
-
(1996)
Trends Biochem. Sci
, vol.21
, pp. 327-335
-
-
Roeder, R.G.1
-
4
-
-
84888130540
-
Structural insights into transcription initiation by RNA polymerase II
-
Grunberg, S. & Hahn, S. Structural insights into transcription initiation by RNA polymerase II. Trends Biochem. Sci. 38, 603-611 (2013).
-
(2013)
Trends Biochem. Sci
, vol.38
, pp. 603-611
-
-
Grunberg, S.1
Hahn, S.2
-
5
-
-
0032450480
-
The RNA polymerase II general transcription factors: Past, present, and future
-
Reinberg, D. et al. The RNA polymerase II general transcription factors: past, present, and future. Cold Spring Harb. Symp. Quant. Biol. 63, 83-103 (1998).
-
(1998)
Cold Spring Harb. Symp. Quant. Biol
, vol.63
, pp. 83-103
-
-
Reinberg, D.1
-
6
-
-
0032451112
-
Mechanism and regulation of yeast RNA polymerase II transcription
-
Kornberg, R. D. Mechanism and regulation of yeast RNA polymerase II transcription. Cold Spring Harb. Symp. Quant. Biol. 63, 229-232 (1998).
-
(1998)
Cold Spring Harb. Symp. Quant. Biol
, vol.63
, pp. 229-232
-
-
Kornberg, R.D.1
-
7
-
-
84857423235
-
Conservation between the RNA polymerase i II and III transcription initiation machineries
-
Vannini, A. & Cramer, P. Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Mol. Cell 45, 439-446 (2012).
-
(2012)
Mol. Cell
, vol.45
, pp. 439-446
-
-
Vannini, A.1
Cramer, P.2
-
8
-
-
84864662191
-
Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening
-
Grunberg, S., Warfield, L. & Hahn, S. Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening. Nature Struct. Mol. Biol. 19, 788-796 (2012).
-
(2012)
Nature Struct. Mol. Biol
, vol.19
, pp. 788-796
-
-
Grunberg, S.1
Warfield, L.2
Hahn, S.3
-
9
-
-
84875613843
-
Structural visualization of key steps in human transcription initiation
-
He, Y., Fang, J., Taatjes, D. J. & Nogales, E. Structural visualization of key steps in human transcription initiation. Nature 495, 481-486 (2013).
-
(2013)
Nature
, vol.495
, pp. 481-486
-
-
He, Y.1
Fang, J.2
Taatjes, D.J.3
Nogales, E.4
-
10
-
-
70450171352
-
RNA polymerase II-TFIIB structure and mechanism of transcription initiation
-
Kostrewa, D. et al. RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature 462, 323-330 (2009).
-
(2009)
Nature
, vol.462
, pp. 323-330
-
-
Kostrewa, D.1
-
11
-
-
74249102477
-
Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism
-
Liu, X., Bushnell, D. A., Wang, D., Calero, G. & Kornberg, R. D. Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism. Science 327, 206-209 (2010).
-
(2010)
Science
, vol.327
, pp. 206-209
-
-
Liu, X.1
Bushnell, D.A.2
Wang, D.3
Calero, G.4
Kornberg, R.D.5
-
12
-
-
84904346675
-
Conserved architecture of the core RNA polymerase II initiation complex
-
Muhlbacher, W. et al. Conserved architecture of the core RNA polymerase II initiation complex. Nature Commun. 5, 4310 (2014).
-
(2014)
Nature Commun
, vol.5
, pp. 4310
-
-
Muhlbacher, W.1
-
13
-
-
84884516365
-
Architecture of an RNA polymerase II transcription pre-initiation complex
-
Murakami, K. et al. Architecture of an RNA polymerase II transcription pre-initiation complex. Science 342, 1238724 (2013).
-
(2013)
Science
, vol.342
, pp. 1238724
-
-
Murakami, K.1
-
14
-
-
0026491908
-
Crystal structure of TFIID TATA-box binding protein
-
Nikolov, D. B. et al. Crystal structure of TFIID TATA-box binding protein. Nature 360, 40-46 (1992).
-
(1992)
Nature
, vol.360
, pp. 40-46
-
-
Nikolov, D.B.1
-
15
-
-
0027250617
-
Crystal structure of yeast TATA-binding protein and model for interaction with DNA
-
Chasman, D. I., Flaherty, K. M., Sharp, P. A. & Kornberg, R. D. Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc. Natl Acad. Sci. USA 90, 8174-8178 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 8174-8178
-
-
Chasman, D.I.1
Flaherty, K.M.2
Sharp, P.A.3
Kornberg, R.D.4
-
16
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATA element
-
Kim, J. L., Nikolov, D. B. & Burley, S. K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365, 520-527 (1993).
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
17
-
-
0027504913
-
Crystal structure of a yeast TBP/TATA-box complex
-
Kim, Y., Geiger, J. H., Hahn, S. & Sigler, P. B. Crystal structure of a yeast TBP/TATA-box complex. Nature 365, 512-520 (1993).
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.B.4
-
18
-
-
0029930779
-
Crystal structure of the yeast TFIIA/TBP/DNA complex
-
Geiger, J. H., Hahn, S., Lee, S. & Sigler, P. B. Crystal structure of the yeast TFIIA/TBP/DNA complex. Science 272, 830-836 (1996).
-
(1996)
Science
, vol.272
, pp. 830-836
-
-
Geiger, J.H.1
Hahn, S.2
Lee, S.3
Sigler, P.B.4
-
19
-
-
0028978670
-
Crystal structure of a TFIIB-TBP-TATA-element ternary complex
-
Nikolov, D. B. et al. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377, 119-128 (1995).
-
(1995)
Nature
, vol.377
, pp. 119-128
-
-
Nikolov, D.B.1
-
20
-
-
0029870514
-
Crystal structure of a yeast TFIIA/TBP/DNA complex
-
Tan, S., Hunziker, Y., Sargent, D. F. & Richmond, T. J. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature 381, 127-151 (1996).
-
(1996)
Nature
, vol.381
, pp. 127-151
-
-
Tan, S.1
Hunziker, Y.2
Sargent, D.F.3
Richmond, T.J.4
-
21
-
-
0037495037
-
Architecture of initiation-competent 12-subunit RNA polymerase II
-
Armache, K. J., Kettenberger, H. & Cramer, P. Architecture of initiation-competent 12-subunit RNA polymerase II. Proc. Natl Acad. Sci. USA 100, 6964-6968 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 6964-6968
-
-
Armache, K.J.1
Kettenberger, H.2
Cramer, P.3
-
22
-
-
14844290215
-
Structures of complete RNA polymerase II and its subcomplex, Rpb4/7
-
Armache, K. J., Mitterweger, S., Meinhart, A. & Cramer, P. Structures of complete RNA polymerase II and its subcomplex, Rpb4/7. J. Biol. Chem. 280, 7131-7134 (2005).
-
(2005)
J. Biol. Chem
, vol.280
, pp. 7131-7134
-
-
Armache, K.J.1
Mitterweger, S.2
Meinhart, A.3
Cramer, P.4
-
23
-
-
0037832543
-
Complete 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription
-
Bushnell, D. A. & Kornberg, R. D. Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: implications for the initiation of transcription. Proc. Natl Acad. Sci. USA 100, 6969-6973 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 6969-6973
-
-
Bushnell, D.A.1
Kornberg, R.D.2
-
24
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
Cramer, P. et al. Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288, 640-649 (2000).
-
(2000)
Science
, vol.288
, pp. 640-649
-
-
Cramer, P.1
-
25
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer, P., Bushnell, D. A. & Kornberg, R. D. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 292, 1863-1876 (2001).
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
26
-
-
0141992120
-
Binding of TFIIB to RNA polymerase II: Mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex
-
Chen, H. T. & Hahn, S. Binding of TFIIB to RNA polymerase II: mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex. Mol. Cell 12, 437-447 (2003).
-
(2003)
Mol. Cell
, vol.12
, pp. 437-447
-
-
Chen, H.T.1
Hahn, S.2
-
27
-
-
1142274214
-
Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 angstroms
-
Bushnell, D. A., Westover, K. D., Davis, R. E. & Kornberg, R. D. Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 angstroms. Science 303, 983-988 (2004).
-
(2004)
Science
, vol.303
, pp. 983-988
-
-
Bushnell, D.A.1
Westover, K.D.2
Davis, R.E.3
Kornberg, R.D.4
-
28
-
-
5444275331
-
Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: A model for the structure of the PIC
-
Chen, H. T. & Hahn, S. Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC. Cell 119, 169-180 (2004).
-
(2004)
Cell
, vol.119
, pp. 169-180
-
-
Chen, H.T.1
Hahn, S.2
-
29
-
-
33745842952
-
DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex
-
Miller, G. & Hahn, S. A. DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex. Nature Struct. Mol. Biol. 13, 603-610 (2006).
-
(2006)
Nature Struct. Mol. Biol
, vol.13
, pp. 603-610
-
-
Miller, G.1
Hahn, S.A.2
-
30
-
-
84872614213
-
Structure and function of the initially transcribing RNA polymerase II-TFIIB complex
-
Sainsbury, S., Niesser, J. & Cramer, P. Structure and function of the initially transcribing RNA polymerase II-TFIIB complex. Nature 493, 437-440 (2013).
-
(2013)
Nature
, vol.493
, pp. 437-440
-
-
Sainsbury, S.1
Niesser, J.2
Cramer, P.3
-
31
-
-
77149146167
-
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
-
Chen, Z. A. et al. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J. 29, 717-726 (2010).
-
(2010)
EMBO J
, vol.29
, pp. 717-726
-
-
Chen, Z.A.1
-
32
-
-
77149124577
-
Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex
-
Eichner, J., Chen, H. T., Warfield, L. & Hahn, S. Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex. EMBO J. 29, 706-716 (2010).
-
(2010)
EMBO J
, vol.29
, pp. 706-716
-
-
Eichner, J.1
Chen, H.T.2
Warfield, L.3
Hahn, S.4
-
33
-
-
34547683177
-
The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex
-
Chen, H. T., Warfield, L. & Hahn, S. The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex. Nature Struct. Mol. Biol. 14, 696-703 (2007).
-
(2007)
Nature Struct. Mol. Biol
, vol.14
, pp. 696-703
-
-
Chen, H.T.1
Warfield, L.2
Hahn, S.3
-
34
-
-
0034717308
-
Mechanism of ATP-dependent promoter melting by transcription factor IIH
-
Kim, T. K., Ebright, R. H. & Reinberg, D. Mechanism of ATP-dependent promoter melting by transcription factor IIH. Science 288, 1418-1422 (2000).
-
(2000)
Science
, vol.288
, pp. 1418-1422
-
-
Kim, T.K.1
Ebright, R.H.2
Reinberg, D.3
-
35
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
Basehoar, A. D., Zanton, S. J. & Pugh, B. F. Identification and distinct regulation of yeast TATA box-containing genes. Cell 116, 699-709 (2004).
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
36
-
-
0023890624
-
A yeast activity can substitute for the HeLa cell TATA box factor
-
Cavallini, B. et al. A yeast activity can substitute for the HeLa cell TATA box factor. Nature 334, 77-80 (1988).
-
(1988)
Nature
, vol.334
, pp. 77-80
-
-
Cavallini, B.1
-
37
-
-
0024949675
-
Cloning and structure of a yeast gene encoding a general transcription initiation factor TFIID that binds to the TATA box
-
Horikoshi, M. et al. Cloning and structure of a yeast gene encoding a general transcription initiation factor TFIID that binds to the TATA box. Nature 341, 299-303 (1989).
-
(1989)
Nature
, vol.341
, pp. 299-303
-
-
Horikoshi, M.1
-
38
-
-
0024457132
-
Isolation of the gene encoding the yeast TATA binding protein TFIID: A gene identical to the SPT15 suppressor of Ty element insertions
-
Hahn, S., Buratowski, S., Sharp, P. A. & Guarente, L. Isolation of the gene encoding the yeast TATA binding protein TFIID: a gene identical to the SPT15 suppressor of Ty element insertions. Cell 58, 1173-1181 (1989).
-
(1989)
Cell
, vol.58
, pp. 1173-1181
-
-
Hahn, S.1
Buratowski, S.2
Sharp, P.A.3
Guarente, L.4
-
39
-
-
0034686037
-
And TAF-independent forms of transcriptionally active TBP in vivo
-
Kuras, L., Kosa, P., Mencia, M. & Struhl, K. TAF-containing and TAF-independent forms of transcriptionally active TBP in vivo. Science 288, 1244-1248 (2000).
-
(2000)
Science
, vol.288
, pp. 1244-1248
-
-
Kuras, L.1
Kosa, P.2
Mencia, M.3
Taf-Containing, S.K.4
-
40
-
-
84858165145
-
Genome-wide structure and organization of eukaryotic pre-initiation complexes
-
Rhee, H. S. & Pugh, B. F. Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483, 295-301 (2012).
-
(2012)
Nature
, vol.483
, pp. 295-301
-
-
Rhee, H.S.1
Pugh, B.F.2
-
41
-
-
84866690202
-
Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics
-
Blair, R. H., Goodrich, J. A. & Kugel, J. F. Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics. Biochemistry 51, 7444-7455 (2012).
-
(2012)
Biochemistry
, vol.51
, pp. 7444-7455
-
-
Blair, R.H.1
Goodrich, J.A.2
Kugel, J.F.3
-
42
-
-
0027974851
-
1.9 Å resolution refined structure of TBP recognizing the minor groove of TATAAAAG
-
Kim, J. L. & Burley, S. K. 1.9 Å resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature Struct. Biol. 1, 638-653 (1994).
-
(1994)
Nature Struct. Biol
, vol.1
, pp. 638-653
-
-
Kim, J.L.1
Burley, S.K.2
-
43
-
-
0030590260
-
How proteins recognize the TATA box
-
Juo, Z. S. et al. How proteins recognize the TATA box. J. Mol. Biol. 261, 239-254 (1996).
-
(1996)
J. Mol. Biol
, vol.261
, pp. 239-254
-
-
Juo, Z.S.1
-
44
-
-
0029995880
-
Crystal structure of a human TATA box-binding protein/TATA element complex
-
Nikolov, D. B. et al. Crystal structure of a human TATA box-binding protein/TATA element complex. Proc. Natl Acad. Sci. USA 93, 4862-4867 (1996).
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 4862-4867
-
-
Nikolov, D.B.1
-
45
-
-
0033573008
-
TATA element recognition by the TATA box-binding protein has been conserved throughout evolution
-
Patikoglou, G. A. et al. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes Dev. 13, 3217-3230 (1999).
-
(1999)
Genes Dev
, vol.13
, pp. 3217-3230
-
-
Patikoglou, G.A.1
-
46
-
-
0028361549
-
Transcription factor (TF) IIB and TFIIA can independently increase the affinity of the TATA-binding protein for DNA
-
Imbalzano, A. N., Zaret, K. S. & Kingston, R. E. Transcription factor (TF) IIB and TFIIA can independently increase the affinity of the TATA-binding protein for DNA. J. Biol. Chem. 269, 8280-8286 (1994).
-
(1994)
J. Biol. Chem
, vol.269
, pp. 8280-8286
-
-
Imbalzano, A.N.1
Zaret, K.S.2
Kingston, R.E.3
-
47
-
-
0028839048
-
Analysis of the yeast transcription factor TFIIA: Distinct functional regions and a polymerase II-specific role in basal and activated transcription
-
Kang, J. J., Auble, D. T., Ranish, J. A. & Hahn, S. Analysis of the yeast transcription factor TFIIA: distinct functional regions and a polymerase II-specific role in basal and activated transcription. Mol. Cell. Biol. 15, 1234-1243 (1995).
-
(1995)
Mol. Cell. Biol
, vol.15
, pp. 1234-1243
-
-
Kang, J.J.1
Auble, D.T.2
Ranish, J.A.3
Hahn, S.4
-
48
-
-
0041825432
-
Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes
-
Bleichenbacher, M., Tan, S. & Richmond, T. J. Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes. J. Mol. Biol. 332, 783-793 (2003).
-
(2003)
J. Mol. Biol
, vol.332
, pp. 783-793
-
-
Bleichenbacher, M.1
Tan, S.2
Richmond, T.J.3
-
49
-
-
0035342427
-
Transcriptional activity of the TFIIA four-helix bundle in vivo
-
Stargell, L. A., Ogg, R. C., Adkins, J. N., Robinson, M. M. & Lumb, K. J. Transcriptional activity of the TFIIA four-helix bundle in vivo. Proteins 43, 227-232 (2001).
-
(2001)
Proteins
, vol.43
, pp. 227-232
-
-
Stargell, L.A.1
Ogg, R.C.2
Adkins, J.N.3
Robinson, M.M.4
Lumb, K.J.5
-
50
-
-
0025820544
-
Cloning of a human gene encoding the general transcription initiation factor IIB
-
Ha, I., Lane, W. S. & Reinberg, D. Cloning of a human gene encoding the general transcription initiation factor IIB. Nature 352, 689-695 (1991).
-
(1991)
Nature
, vol.352
, pp. 689-695
-
-
Ha, I.1
Lane, W.S.2
Reinberg, D.3
-
51
-
-
0025936684
-
Sequence of general transcription factor TFIIB and relationships to other initiation factors
-
Malik, S., Hisatake, K., Sumimoto, H., Horikoshi, M. & Roeder, R. G. Sequence of general transcription factor TFIIB and relationships to other initiation factors. Proc. Natl Acad. Sci. USA 88, 9553-9557 (1991).
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 9553-9557
-
-
Malik, S.1
Hisatake, K.2
Sumimoto, H.3
Horikoshi, M.4
Roeder, R.G.5
-
52
-
-
0026559077
-
The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo
-
Pinto, I., Ware, D. E. & Hampsey, M. The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo. Cell 68, 977-988 (1992).
-
(1992)
Cell
, vol.68
, pp. 977-988
-
-
Pinto, I.1
Ware, D.E.2
Hampsey, M.3
-
53
-
-
0000647604
-
Factors involved in specific transcription by human RNA polymerase II: Analysis by a rapid and quantitative in vitro assay
-
Sawadogo, M. & Roeder, R. G. Factors involved in specific transcription by human RNA polymerase II: analysis by a rapid and quantitative in vitro assay. Proc. Natl Acad. Sci. USA 82, 4394-4398 (1985).
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 4394-4398
-
-
Sawadogo, M.1
Roeder, R.G.2
-
54
-
-
0037040419
-
A regulated two-step mechanism of TBP binding to DNA: A solvent-exposed surface of TBP inhibits TATA box recognition
-
Zhao, X. & Herr, W. A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition. Cell 108, 615-627 (2002).
-
(2002)
Cell
, vol.108
, pp. 615-627
-
-
Zhao, X.1
Herr, W.2
-
55
-
-
0027315873
-
Functional domains of transcription factor TFIIB
-
Buratowski, S. & Zhou, H. Functional domains of transcription factor TFIIB. Proc. Natl Acad. Sci. USA 90, 5633-5637 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 5633-5637
-
-
Buratowski, S.1
Zhou, H.2
-
56
-
-
0027285365
-
Delineation of two functional regions of transcription factor TFIIB
-
Barberis, A., Müller, C. W., Harrison, S. C. & Ptashne, M. Delineation of two functional regions of transcription factor TFIIB. Proc. Natl Acad. Sci. USA 90, 5628-5632 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 5628-5632
-
-
Barberis, A.1
Müller, C.W.2
Harrison, S.C.3
Ptashne, M.4
-
57
-
-
0027159966
-
Multiple functional domains of human transcription factor IIB: Distinct interactions with two general transcription factors and RNA polymerase II
-
Ha, I. et al. Multiple functional domains of human transcription factor IIB: distinct interactions with two general transcription factors and RNA polymerase II. Genes Dev. 7, 1021-1032 (1993).
-
(1993)
Genes Dev
, vol.7
, pp. 1021-1032
-
-
Ha, I.1
-
58
-
-
0033626545
-
Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription
-
Chen, H. T., Legault, P., Glushka, J., Omichinski, J. G. & Scott, R. A. Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription. Protein Sci. 9, 1743-1752 (2000).
-
(2000)
Protein Sci
, vol.9
, pp. 1743-1752
-
-
Chen, H.T.1
Legault, P.2
Glushka, J.3
Omichinski, J.G.4
Scott, R.A.5
-
59
-
-
0030050454
-
The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon
-
Zhu, W. et al. The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon. Nature Struct. Biol. 3, 122-124 (1996).
-
(1996)
Nature Struct. Biol
, vol.3
, pp. 122-124
-
-
Zhu, W.1
-
60
-
-
0029120954
-
Solution structure of the C-terminal core domain of human TFIIB: Similarity to cyclin A and interaction with TATA-binding protein
-
Bagby, S. et al. Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein. Cell 82, 857-867 (1995).
-
(1995)
Cell
, vol.82
, pp. 857-867
-
-
Bagby, S.1
-
61
-
-
78651504121
-
Evolution of multisubunit RNA polymerases in the three domains of life
-
Werner, F. & Grohmann, D. Evolution of multisubunit RNA polymerases in the three domains of life. Nature Rev. Microbiol. 9, 85-98 (2011).
-
(2011)
Nature Rev. Microbiol
, vol.9
, pp. 85-98
-
-
Werner, F.1
Grohmann, D.2
-
62
-
-
0031562901
-
The 2.1-Å crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box
-
Kosa, P. F., Ghosh, G., DeDecker, B. S. & Sigler, P. B. The 2.1-Å crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proc. Natl Acad. Sci. USA 94, 6042-6047 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6042-6047
-
-
Kosa, P.F.1
Ghosh, G.2
Dedecker, B.S.3
Sigler, P.B.4
-
63
-
-
44649193565
-
The RNA polymerase II core promoter - The gateway to transcription
-
Juven-Gershon, T., Hsu, J. Y., Theisen, J. W. & Kadonaga, J. T. The RNA polymerase II core promoter-the gateway to transcription. Curr. Opin. Cell Biol. 20, 253-259 (2008).
-
(2008)
Curr. Opin. Cell Biol
, vol.20
, pp. 253-259
-
-
Juven-Gershon, T.1
Hsu, J.Y.2
Theisen, J.W.3
Kadonaga, J.T.4
-
64
-
-
0031882652
-
New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB
-
Lagrange, T., Kapanidis, A. N., Tang, H., Reinberg, D. & Ebright, R. H. New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB. Genes Dev. 12, 34-44 (1998).
-
(1998)
Genes Dev
, vol.12
, pp. 34-44
-
-
Lagrange, T.1
Kapanidis, A.N.2
Tang, H.3
Reinberg, D.4
Ebright, R.H.5
-
65
-
-
26944492656
-
A core promoter element downstream of the TATA box that is recognized by TFIIB
-
Deng, W. & Roberts, S. G. A core promoter element downstream of the TATA box that is recognized by TFIIB. Genes Dev. 19, 2418-2423 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 2418-2423
-
-
Deng, W.1
Roberts, S.G.2
-
66
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP/TFB/promoter complex
-
Littlefield, O., Korkhin, Y. & Sigler, P. B. The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc. Natl Acad. Sci. USA 96, 13668-13673 (1999).
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 13668-13673
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.B.3
-
67
-
-
0033598809
-
Orientation of the transcription preinitiation complex in Archaea
-
Bell, S. D., Kosa, P. L., Sigler, P. B. & Jackson, S. P. Orientation of the transcription preinitiation complex in Archaea. Proc. Natl Acad. Sci. USA 96, 13662-13667 (1999).
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 13662-13667
-
-
Bell, S.D.1
Kosa, P.L.2
Sigler, P.B.3
Jackson, S.P.4
-
68
-
-
0034602843
-
Structural basis of preinitiation complex assembly on human Pol II promoters
-
Tsai, F. T. & Sigler, P. B. Structural basis of preinitiation complex assembly on human Pol II promoters. EMBO J. 19, 25-36 (2000).
-
(2000)
EMBO J
, vol.19
, pp. 25-36
-
-
Tsai, F.T.1
Sigler, P.B.2
-
69
-
-
0033520279
-
Evidence that transcription factor IIB is required for a post-assembly step in transcription initiation
-
Cho, E. J. & Buratowski, S. Evidence that transcription factor IIB is required for a post-assembly step in transcription initiation. J. Biol. Chem. 274, 25807-25813 (1999).
-
(1999)
J. Biol. Chem
, vol.274
, pp. 25807-25813
-
-
Cho, E.J.1
Buratowski, S.2
-
70
-
-
0032900980
-
Intermediates in formation and activity of the RNA polymerase II preinitiation complex: Holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB
-
Ranish, J. A., Yudkovsky, N. & Hahn, S. Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev. 13, 49-63 (1999).
-
(1999)
Genes Dev
, vol.13
, pp. 49-63
-
-
Ranish, J.A.1
Yudkovsky, N.2
Hahn, S.3
-
71
-
-
23444439791
-
RNA polymerase II initiation factor interactions and transcription start site selection
-
Li, Y., Flanagan, P. M., Tschochner, H. & Kornberg, R. D. RNA polymerase II initiation factor interactions and transcription start site selection. Science 263, 805-807 (1994).
-
(1994)
Science
, vol.263
, pp. 805-807
-
-
Li, Y.1
Flanagan, P.M.2
Tschochner, H.3
Kornberg, R.D.4
-
72
-
-
0030723104
-
Mutational analysis of the D1/E1 core helices and the conserved N-terminal region of yeast transcription factor IIB (TFIIB): Identification of an N-terminal mutant that stabilizes TATA-binding protein-TFIIB-DNA complexes
-
Bangur, C. S., Pardee, T. S. & Ponticelli, A. S. Mutational analysis of the D1/E1 core helices and the conserved N-terminal region of yeast transcription factor IIB (TFIIB): identification of an N-terminal mutant that stabilizes TATA-binding protein-TFIIB-DNA complexes. Mol. Cell. Biol. 17, 6784-6793 (1997).
-
(1997)
Mol. Cell. Biol
, vol.17
, pp. 6784-6793
-
-
Bangur, C.S.1
Pardee, T.S.2
Ponticelli, A.S.3
-
73
-
-
0034960967
-
Promoter-specific shifts in transcription initiation conferred by yeast TFIIB mutations are determined by the sequence in the immediate vicinity of the start sites
-
Faitar, S. L., Brodie, S. A. & Ponticelli, A. S. Promoter-specific shifts in transcription initiation conferred by yeast TFIIB mutations are determined by the sequence in the immediate vicinity of the start sites. Mol. Cell. Biol. 21, 4427-4440 (2001).
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 4427-4440
-
-
Faitar, S.L.1
Brodie, S.A.2
Ponticelli, A.S.3
-
74
-
-
1942422184
-
Functional interaction between TFIIB and the Rpb2 subunit of RNA polymerase II: Implications for the mechanism of transcription initiation
-
Chen, B. S. & Hampsey, M. Functional interaction between TFIIB and the Rpb2 subunit of RNA polymerase II: implications for the mechanism of transcription initiation. Mol. Cell. Biol. 24, 3983-3991 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 3983-3991
-
-
Chen, B.S.1
Hampsey, M.2
-
75
-
-
33744913056
-
Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model
-
Kuehner, J. N. & Brow, D. A. Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model. J. Biol. Chem. 281, 14119-14128 (2006).
-
(2006)
J. Biol. Chem
, vol.281
, pp. 14119-14128
-
-
Kuehner, J.N.1
Brow, D.A.2
-
76
-
-
80053148610
-
Transcription factor TFIIF is not required for initiation by RNA polymerase II, but it is essential to stabilize transcription factor TFIIB in early elongation complexes
-
Cabart, P., Ujvari, A., Pal, M. & Luse, D. S. Transcription factor TFIIF is not required for initiation by RNA polymerase II, but it is essential to stabilize transcription factor TFIIB in early elongation complexes. Proc. Natl Acad. Sci. USA 108, 15786-15791 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 15786-15791
-
-
Cabart, P.1
Ujvari, A.2
Pal, M.3
Luse, D.S.4
-
77
-
-
21244484548
-
The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II
-
Pal, M., Ponticelli, A. S. & Luse, D. S. The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol. Cell 19, 101-110 (2005).
-
(2005)
Mol. Cell
, vol.19
, pp. 101-110
-
-
Pal, M.1
Ponticelli, A.S.2
Luse, D.S.3
-
78
-
-
0022818349
-
Proteins that bind to RNA polymerase II are required for accurate initiation of transcription at the adenovirus 2 major late promoter
-
Burton, Z. F., Ortolan, L. G. & Greenblatt, J. Proteins that bind to RNA polymerase II are required for accurate initiation of transcription at the adenovirus 2 major late promoter. EMBO J. 5, 2923-2930 (1986).
-
(1986)
EMBO J
, vol.5
, pp. 2923-2930
-
-
Burton, Z.F.1
Ortolan, L.G.2
Greenblatt, J.3
-
79
-
-
0022360597
-
Isolation of three proteins that bind to mammalian RNA polymerase II
-
Sopta, M., Carthew, R. W. & Greenblatt, J. Isolation of three proteins that bind to mammalian RNA polymerase II. J. Biol. Chem. 260, 10353-10360 (1985).
-
(1985)
J. Biol. Chem
, vol.260
, pp. 10353-10360
-
-
Sopta, M.1
Carthew, R.W.2
Greenblatt, J.3
-
80
-
-
0023920678
-
RAP30/74: A general initiation factor that binds to RNA polymerase II
-
Burton, Z. F., Killeen, M., Sopta, M., Ortolan, L. G. & Greenblatt, J. RAP30/74: a general initiation factor that binds to RNA polymerase II. Mol. Cell. Biol. 8, 1602-1613 (1988).
-
(1988)
Mol. Cell. Biol
, vol.8
, pp. 1602-1613
-
-
Burton, Z.F.1
Killeen, M.2
Sopta, M.3
Ortolan, L.G.4
Greenblatt, J.5
-
81
-
-
0023814881
-
Factors involved in specific transcription by mammalian RNA polymerase II: RNA polymerase II-associating protein 30 is an essential component of transcription factor IIF
-
Flores, O., Maldonado, E., Burton, Z., Greenblatt, J. & Reinberg, D. Factors involved in specific transcription by mammalian RNA polymerase II: RNA polymerase II-associating protein 30 is an essential component of transcription factor IIF. J. Biol. Chem. 263, 10812-10816 (1988).
-
(1988)
J. Biol. Chem
, vol.263
, pp. 10812-10816
-
-
Flores, O.1
Maldonado, E.2
Burton, Z.3
Greenblatt, J.4
Reinberg, D.5
-
82
-
-
0025773390
-
Identification and purification of a yeast protein that affects elongation by RNA polymerase II
-
Chafin, D. R., Claussen, T. J. & Price, D. H. Identification and purification of a yeast protein that affects elongation by RNA polymerase II. J. Biol. Chem. 266, 9256-9262 (1991).
-
(1991)
J. Biol. Chem
, vol.266
, pp. 9256-9262
-
-
Chafin, D.R.1
Claussen, T.J.2
Price, D.H.3
-
83
-
-
0026463872
-
Purification and characterization of yeast RNA polymerase II general initiation factor g
-
Henry, N. L., Sayre, M. H. & Kornberg, R. D. Purification and characterization of yeast RNA polymerase II general initiation factor g. J. Biol. Chem. 267, 23388-23392 (1992).
-
(1992)
J. Biol. Chem
, vol.267
, pp. 23388-23392
-
-
Henry, N.L.1
Sayre, M.H.2
Kornberg, R.D.3
-
84
-
-
0028171310
-
TFIIF-TAF-RNA polymerase II connection
-
Henry, N. L. et al. TFIIF-TAF-RNA polymerase II connection. Genes Dev. 8, 2868-2878 (1994).
-
(1994)
Genes Dev
, vol.8
, pp. 2868-2878
-
-
Henry, N.L.1
-
85
-
-
0034657420
-
The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAFII30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex
-
John, S. et al. The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAFII30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex. Genes Dev. 14, 1196-1208 (2000).
-
(2000)
Genes Dev
, vol.14
, pp. 1196-1208
-
-
John, S.1
-
86
-
-
0842304212
-
RNA polymerase II (Pol II)-TFIIF and Pol II-Mediator complexes: The major stable Pol II complexes and their activity in transcription initiation and reinitiation
-
Rani, P. G., Ranish, J. A. & Hahn, S. RNA polymerase II (Pol II)-TFIIF and Pol II-Mediator complexes: the major stable Pol II complexes and their activity in transcription initiation and reinitiation. Mol. Cell. Biol. 24, 1709-1720 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 1709-1720
-
-
Rani, P.G.1
Ranish, J.A.2
Hahn, S.3
-
87
-
-
0025895981
-
Mechanism of promoter selection by RNA polymerase II: Mammalian transcription factors and promote entry of polymerase into the preinitiation complex
-
Conaway, R. C., Garrett, K. P., Hanley, J. P. & Conaway, J. W. Mechanism of promoter selection by RNA polymerase II: mammalian transcription factors and promote entry of polymerase into the preinitiation complex. Proc. Natl Acad. Sci. USA 88, 6205-6209 (1991).
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 6205-6209
-
-
Conaway, R.C.1
Garrett, K.P.2
Hanley, J.P.3
Conaway, J.W.4
-
88
-
-
0027943675
-
Roles for both the RAP30 and RAP74 subunits of transcription factor IIF in transcription initiation and elongation by RNA polymerase II
-
Tan, S., Aso, T., Conaway, R. C. & Conaway, J. W. Roles for both the RAP30 and RAP74 subunits of transcription factor IIF in transcription initiation and elongation by RNA polymerase II. J. Biol. Chem. 269, 25684-25691 (1994).
-
(1994)
J. Biol. Chem
, vol.269
, pp. 25684-25691
-
-
Tan, S.1
Aso, T.2
Conaway, R.C.3
Conaway, J.W.4
-
89
-
-
84856781205
-
Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF
-
Fishburn, J. & Hahn, S. Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF. Mol. Cell. Biol. 32, 12-25 (2012).
-
(2012)
Mol. Cell. Biol
, vol.32
, pp. 12-25
-
-
Fishburn, J.1
Hahn, S.2
-
90
-
-
10044250105
-
Amino acid substitutions in yeast TFIIF confer upstream shifts in transcription initiation and altered interaction with RNA polymerase II
-
Ghazy, M. A., Brodie, S. A., Ammerman, M. L., Ziegler, L. M. & Ponticelli, A. S. Amino acid substitutions in yeast TFIIF confer upstream shifts in transcription initiation and altered interaction with RNA polymerase II. Mol. Cell. Biol. 24, 10975-10985 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 10975-10985
-
-
Ghazy, M.A.1
Brodie, S.A.2
Ammerman, M.L.3
Ziegler, L.M.4
Ponticelli, A.S.5
-
91
-
-
0032695884
-
A region within the RAP74 subunit of human transcription factor IIF is critical for initiation but dispensable for complex assembly
-
Ren, D., Lei, L. & Burton, Z. F. A region within the RAP74 subunit of human transcription factor IIF is critical for initiation but dispensable for complex assembly. Mol. Cell. Biol. 19, 7377-7387 (1999).
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 7377-7387
-
-
Ren, D.1
Lei, L.2
Burton, Z.F.3
-
92
-
-
0033544966
-
Dual roles for transcription factor IIF in promoter escape by RNA polymerase II
-
Yan, Q., Moreland, R. J., Conaway, J. W. & Conaway, R. C. Dual roles for transcription factor IIF in promoter escape by RNA polymerase II. J. Biol. Chem. 274, 35668-35675 (1999).
-
(1999)
J. Biol. Chem
, vol.274
, pp. 35668-35675
-
-
Yan, Q.1
Moreland, R.J.2
Conaway, J.W.3
Conaway, R.C.4
-
93
-
-
44349165718
-
Functions of Saccharomyces cerevisiae TFIIF during transcription start site utilization
-
Khaperskyy, D. A., Ammerman, M. L., Majovski, R. C. & Ponticelli, A. S. Functions of Saccharomyces cerevisiae TFIIF during transcription start site utilization. Mol. Cell. Biol. 28, 3757-3766 (2008).
-
(2008)
Mol. Cell. Biol
, vol.28
, pp. 3757-3766
-
-
Khaperskyy, D.A.1
Ammerman, M.L.2
Majovski, R.C.3
Ponticelli, A.S.4
-
94
-
-
0024504832
-
Dynamic interaction between a Drosophila transcription factor and RNA polymerase II
-
Price, D. H., Sluder, A. E. & Greenleaf, A. L. Dynamic interaction between a Drosophila transcription factor and RNA polymerase II. Mol. Cell. Biol. 9, 1465-1475 (1989).
-
(1989)
Mol. Cell. Biol
, vol.9
, pp. 1465-1475
-
-
Price, D.H.1
Sluder, A.E.2
Greenleaf, A.L.3
-
95
-
-
0028104678
-
Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site
-
Pan, G. & Greenblatt, J. Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site. J. Biol. Chem. 269, 30101-30104 (1994).
-
(1994)
J. Biol. Chem
, vol.269
, pp. 30101-30104
-
-
Pan, G.1
Greenblatt, J.2
-
96
-
-
0034613012
-
Novel dimerization fold of RAP30/RAP74 in human TFIIF at 1.7 Å resolution
-
Gaiser, F., Tan, S. & Richmond, T. J. Novel dimerization fold of RAP30/RAP74 in human TFIIF at 1.7 Å resolution. J. Mol. Biol. 302, 1119-1127 (2000).
-
(2000)
J. Mol. Biol
, vol.302
, pp. 1119-1127
-
-
Gaiser, F.1
Tan, S.2
Richmond, T.J.3
-
97
-
-
0032482927
-
Structural homology between the Rap30 DNA-binding domain and linker histone H5: Implications for preinitiation complex assembly
-
Groft, C. M., Uljon, S. N., Wang, R. & Werner, M. H. Structural homology between the Rap30 DNA-binding domain and linker histone H5: implications for preinitiation complex assembly. Proc. Natl Acad. Sci. USA 95, 9117-9122 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 9117-9122
-
-
Groft, C.M.1
Uljon, S.N.2
Wang, R.3
Werner, M.H.4
-
98
-
-
0035853033
-
Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF
-
Kamada, K., De Angelis, J., Roeder, R. G. & Burley, S. K. Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF. Proc. Natl Acad. Sci. USA 98, 3115-3120 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 3115-3120
-
-
Kamada, K.1
De Angelis, J.2
Roeder, R.G.3
Burley, S.K.4
-
99
-
-
0032544677
-
Structure of the human transcription factor TFIIF revealed by limited proteolysis with trypsin
-
Yong, C. et al. Structure of the human transcription factor TFIIF revealed by limited proteolysis with trypsin. FEBS Lett. 435, 191-194 (1998).
-
(1998)
FEBS Lett
, vol.435
, pp. 191-194
-
-
Yong, C.1
-
100
-
-
0031460227
-
An essential component of a C-terminal domain phosphatase that interacts with transcription factor IIF in Saccharomyces cerevisiae
-
Archambault, J. et al. An essential component of a C-terminal domain phosphatase that interacts with transcription factor IIF in Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA 94, 14300-14305 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 14300-14305
-
-
Archambault, J.1
-
101
-
-
0038286151
-
NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1
-
Nguyen, B. D. et al. NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1. Proc. Natl Acad. Sci. USA 100, 5688-5693 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 5688-5693
-
-
Nguyen, B.D.1
-
102
-
-
0025721103
-
The small subunit of transcription factor IIF recruits RNA polymerase II into the preinitiation complex
-
Flores, O. et al. The small subunit of transcription factor IIF recruits RNA polymerase II into the preinitiation complex. Proc. Natl Acad. Sci. USA 88, 9999-10003 (1991).
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 9999-10003
-
-
Flores, O.1
-
103
-
-
0027168947
-
Identification of a minimal set of proteins that is sufficient for accurate initiation of transcription by RNA polymerase II
-
Tyree, C. M. et al. Identification of a minimal set of proteins that is sufficient for accurate initiation of transcription by RNA polymerase II. Genes Dev. 7, 1254-1265 (1993).
-
(1993)
Genes Dev
, vol.7
, pp. 1254-1265
-
-
Tyree, C.M.1
-
104
-
-
0027103173
-
The carboxyl terminus of RAP30 is similar in sequence to region 4 of bacterial sigma factors and is required for function
-
Garrett, K. P. et al. The carboxyl terminus of RAP30 is similar in sequence to region 4 of bacterial sigma factors and is required for function. J. Biol. Chem. 267, 23942-23949 (1992).
-
(1992)
J. Biol. Chem
, vol.267
, pp. 23942-23949
-
-
Garrett, K.P.1
-
105
-
-
0028114293
-
Cryptic DNA-binding domain in the C terminus of RNA polymerase II general transcription factor RAP30
-
Tan, S., Garrett, K. P., Conaway, R. C. & Conaway, J. W. Cryptic DNA-binding domain in the C terminus of RNA polymerase II general transcription factor RAP30. Proc. Natl Acad. Sci. USA 91, 9808-9812 (1994).
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 9808-9812
-
-
Tan, S.1
Garrett, K.P.2
Conaway, R.C.3
Conaway, J.W.4
-
106
-
-
0242266617
-
RNA polymerase II/TFIIF structure and conserved organization of the initiation complex
-
Chung, W. H. et al. RNA polymerase II/TFIIF structure and conserved organization of the initiation complex. Mol. Cell 12, 1003-1013 (2003).
-
(2003)
Mol. Cell
, vol.12
, pp. 1003-1013
-
-
Chung, W.H.1
-
107
-
-
0037033094
-
A key role for the 1 helix of human RAP74 in the initiation and elongation of RNA chains
-
Funk, J. D., Nedialkov, Y. A., Xu, D. & Burton, Z. F. A key role for the 1 helix of human RAP74 in the initiation and elongation of RNA chains. J. Biol. Chem. 277, 46998-47003 (2002).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 46998-47003
-
-
Funk, J.D.1
Nedialkov, Y.A.2
Xu, D.3
Burton, Z.F.4
-
108
-
-
17644384843
-
Human RNA polymerase II elongation in slow motion: Role of the TFIIF RAP74 1 helix in nucleoside triphosphate-driven translocation
-
Zhang, C., Zobeck, K. L. & Burton, Z. F. Human RNA polymerase II elongation in slow motion: role of the TFIIF RAP74 1 helix in nucleoside triphosphate-driven translocation. Mol. Cell. Biol. 25, 3583-3595 (2005).
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 3583-3595
-
-
Zhang, C.1
Zobeck, K.L.2
Burton, Z.F.3
-
109
-
-
0033513098
-
The RAP74 subunit of human transcription factor IIF has similar roles in initiation and elongation
-
Lei, L., Ren, D. & Burton, Z. F. The RAP74 subunit of human transcription factor IIF has similar roles in initiation and elongation. Mol. Cell. Biol. 19, 8372-8382 (1999).
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 8372-8382
-
-
Lei, L.1
Ren, D.2
Burton, Z.F.3
-
110
-
-
0032161845
-
Wrapping of promoter DNA around the RNA polymerase II initiation complex induced by TFIIF
-
Robert, F. et al. Wrapping of promoter DNA around the RNA polymerase II initiation complex induced by TFIIF. Mol. Cell 2, 341-351 (1998).
-
(1998)
Mol. Cell
, vol.2
, pp. 341-351
-
-
Robert, F.1
-
111
-
-
0000402041
-
An RNA polymerase II transcription factor has an associated DNA-dependent ATPase (dATPase) activity strongly stimulated by the TATA region of promoters
-
Conaway, R. C. & Conaway, J. W. An RNA polymerase II transcription factor has an associated DNA-dependent ATPase (dATPase) activity strongly stimulated by the TATA region of promoters. Proc. Natl Acad. Sci. USA 86, 7356-7360 (1989).
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 7356-7360
-
-
Conaway, R.C.1
Conaway, J.W.2
-
112
-
-
0026052701
-
Purification and characterization of yeast RNA polymerase II transcription factor b
-
Feaver, W. J., Gileadi, O. & Kornberg, R. D. Purification and characterization of yeast RNA polymerase II transcription factor b. J. Biol. Chem. 266, 19000-19005 (1991).
-
(1991)
J. Biol. Chem
, vol.266
, pp. 19000-19005
-
-
Feaver, W.J.1
Gileadi, O.2
Kornberg, R.D.3
-
113
-
-
0025787782
-
Purification and interaction properties of the human RNA polymerase B(II) general transcription factor BTF2
-
Gerard, M. et al. Purification and interaction properties of the human RNA polymerase B(II) general transcription factor BTF2. J. Biol. Chem. 266, 20940-20945 (1991).
-
(1991)
J. Biol. Chem
, vol.266
, pp. 20940-20945
-
-
Gerard, M.1
-
114
-
-
0026802039
-
Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH
-
Flores, O., Lu, H. & Reinberg, D. Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH. J. Biol. Chem. 267, 2786-2793 (1992).
-
(1992)
J. Biol. Chem
, vol.267
, pp. 2786-2793
-
-
Flores, O.1
Lu, H.2
Reinberg, D.3
-
115
-
-
0027905008
-
DNA repair helicase: A component of BTF2 (TFIIH) basic transcription factor
-
Schaeffer, L. et al. DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor. Science 260, 58-63 (1993).
-
(1993)
Science
, vol.260
, pp. 58-63
-
-
Schaeffer, L.1
-
116
-
-
0030007387
-
Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH
-
Holstege, F. C., van der Vliet, P. C. & Timmers, H. T. Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH. EMBO J. 15, 1666-1677 (1996).
-
(1996)
EMBO J
, vol.15
, pp. 1666-1677
-
-
Holstege, F.C.1
Van Der Vliet, P.C.2
Timmers, H.T.3
-
117
-
-
0028352861
-
Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II
-
Goodrich, J. A. & Tjian, R. Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Cell 77, 145-156 (1994).
-
(1994)
Cell
, vol.77
, pp. 145-156
-
-
Goodrich, J.A.1
Tjian, R.2
-
118
-
-
0033529635
-
A role for the TFIIH XPB DNA helicase in promoter escape by RNA polymerase II
-
Moreland, R. J. et al. A role for the TFIIH XPB DNA helicase in promoter escape by RNA polymerase II. J. Biol. Chem. 274, 22127-22130 (1999).
-
(1999)
J. Biol. Chem
, vol.274
, pp. 22127-22130
-
-
Moreland, R.J.1
-
119
-
-
79960377780
-
A history of TFIIH: Two decades of molecular biology on a pivotal transcription/repair factor
-
Egly, J. M. & Coin, F. A history of TFIIH: two decades of molecular biology on a pivotal transcription/repair factor. DNA Repair 10, 714-721 (2011).
-
(2011)
DNA Repair
, vol.10
, pp. 714-721
-
-
Egly, J.M.1
Coin, F.2
-
120
-
-
0024324371
-
Factors involved in specific transcription by mammalian RNA polymerase II: Factors IIE and IIF independently interact with RNA polymerase II
-
Flores, O., Maldonado, E. & Reinberg, D. Factors involved in specific transcription by mammalian RNA polymerase II: factors IIE and IIF independently interact with RNA polymerase II. J. Biol. Chem. 264, 8913-8921 (1989).
-
(1989)
J. Biol. Chem
, vol.264
, pp. 8913-8921
-
-
Flores, O.1
Maldonado, E.2
Reinberg, D.3
-
121
-
-
0025864548
-
Factors involved in specific transcription by mammalian RNA polymerase II: Purification and functional analysis of general transcription factor IIE
-
Inostroza, J., Flores, O. & Reinberg, D. Factors involved in specific transcription by mammalian RNA polymerase II: purification and functional analysis of general transcription factor IIE. J. Biol. Chem. 266, 9304-9308 (1991).
-
(1991)
J. Biol. Chem
, vol.266
, pp. 9304-9308
-
-
Inostroza, J.1
Flores, O.2
Reinberg, D.3
-
122
-
-
0028296106
-
Transcription factor IIE binds preferentially to RNA polymerase IIa and recruits TFIIH: A model for promoter clearance
-
Maxon, M. E., Goodrich, J. A. & Tjian, R. Transcription factor IIE binds preferentially to RNA polymerase IIa and recruits TFIIH: a model for promoter clearance. Genes Dev. 8, 515-524 (1994).
-
(1994)
Genes Dev
, vol.8
, pp. 515-524
-
-
Maxon, M.E.1
Goodrich, J.A.2
Tjian, R.3
-
123
-
-
0028964168
-
The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA
-
Holstege, F. C., Tantin, D., Carey, M., van der Vliet, P. C. & Timmers, H. T. The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA. EMBO J. 14, 810-819 (1995).
-
(1995)
EMBO J
, vol.14
, pp. 810-819
-
-
Holstege, F.C.1
Tantin, D.2
Carey, M.3
Van Der Vliet, P.C.4
Timmers, H.T.5
-
124
-
-
0028293210
-
Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formation
-
Ohkuma, Y. & Roeder, R. G. Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formation. Nature 368, 160-163 (1994).
-
(1994)
Nature
, vol.368
, pp. 160-163
-
-
Ohkuma, Y.1
Roeder, R.G.2
-
125
-
-
0030744465
-
Genetic analysis of the large subunit of yeast transcription factor IIE reveals two regions with distinct functions
-
Kuldell, N. H. & Buratowski, S. Genetic analysis of the large subunit of yeast transcription factor IIE reveals two regions with distinct functions. Mol. Cell. Biol. 17, 5288-5298 (1997).
-
(1997)
Mol. Cell. Biol
, vol.17
, pp. 5288-5298
-
-
Kuldell, N.H.1
Buratowski, S.2
-
126
-
-
0032499708
-
An interplay between TATA box-binding protein and transcription factors IIE and IIA modulates DNA binding and transcription
-
Yokomori, K., Verrijzer, C. P. & Tjian, R. An interplay between TATA box-binding protein and transcription factors IIE and IIA modulates DNA binding and transcription. Proc. Natl Acad. Sci. USA 95, 6722-6727 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 6722-6727
-
-
Yokomori, K.1
Verrijzer, C.P.2
Tjian, R.3
-
127
-
-
0025633257
-
Factors involved in specific transcription by mammalian RNA polymerase II: Purification and characterization of general transcription factor TFIIE
-
Ohkuma, Y., Sumimoto, H., Horikoshi, M. & Roeder, R. G. Factors involved in specific transcription by mammalian RNA polymerase II: purification and characterization of general transcription factor TFIIE. Proc. Natl Acad. Sci. USA 87, 9163-9167 (1990).
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 9163-9167
-
-
Ohkuma, Y.1
Sumimoto, H.2
Horikoshi, M.3
Roeder, R.G.4
-
128
-
-
0026038323
-
Structure and functional properties of human general transcription factor IIE
-
Peterson, M. G. et al. Structure and functional properties of human general transcription factor IIE. Nature 354, 369-373 (1991).
-
(1991)
Nature
, vol.354
, pp. 369-373
-
-
Peterson, M.G.1
-
129
-
-
0026046960
-
Conserved sequence motifs in the small subunit of human general transcription factor TFIIE
-
Sumimoto, H. et al. Conserved sequence motifs in the small subunit of human general transcription factor TFIIE. Nature 354, 401-404 (1991).
-
(1991)
Nature
, vol.354
, pp. 401-404
-
-
Sumimoto, H.1
-
130
-
-
0025985309
-
Structural motifs and potential sigma homologies in the large subunit of human general transcription factor TFIIE
-
Ohkuma, Y. et al. Structural motifs and potential sigma homologies in the large subunit of human general transcription factor TFIIE. Nature 354, 398-401 (1991).
-
(1991)
Nature
, vol.354
, pp. 398-401
-
-
Ohkuma, Y.1
-
131
-
-
0029163246
-
Analysis of the role of TFIIE in basal transcription and TFIIH-mediated carboxy-terminal domain phosphorylation through structure-function studies of TFIIE
-
Ohkuma, Y., Hashimoto, S., Wang, C. K., Horikoshi, M. & Roeder, R. G. Analysis of the role of TFIIE in basal transcription and TFIIH-mediated carboxy-terminal domain phosphorylation through structure-function studies of TFIIE. Mol. Cell. Biol. 15, 4856-4866 (1995).
-
(1995)
Mol. Cell. Biol
, vol.15
, pp. 4856-4866
-
-
Ohkuma, Y.1
Hashimoto, S.2
Wang, C.K.3
Horikoshi, M.4
Roeder, R.G.5
-
132
-
-
77955993009
-
RNA polymerase i contains a TFIIF-related DNA-binding subcomplex
-
Geiger, S. R. et al. RNA polymerase I contains a TFIIF-related DNA-binding subcomplex. Mol. Cell 39, 583-594 (2010).
-
(2010)
Mol. Cell
, vol.39
, pp. 583-594
-
-
Geiger, S.R.1
-
133
-
-
0348111451
-
An extended winged helix domain in general transcription factor E/IIE
-
Meinhart, A., Blobel, J. & Cramer, P. An extended winged helix domain in general transcription factor E/IIE. J. Biol. Chem. 278, 48267-48274 (2003).
-
(2003)
J. Biol. Chem
, vol.278
, pp. 48267-48274
-
-
Meinhart, A.1
Blobel, J.2
Cramer, P.3
-
134
-
-
10944270132
-
A novel zinc finger structure in the large subunit of human general transcription factor TFIIE
-
Okuda, M. et al. A novel zinc finger structure in the large subunit of human general transcription factor TFIIE. J. Biol. Chem. 279, 51395-51403 (2004).
-
(2004)
J. Biol. Chem
, vol.279
, pp. 51395-51403
-
-
Okuda, M.1
-
135
-
-
41949104574
-
Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
-
Okuda, M. et al. Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH. EMBO J. 27, 1161-1171 (2008).
-
(2008)
EMBO J
, vol.27
, pp. 1161-1171
-
-
Okuda, M.1
-
136
-
-
0034653424
-
Structure of the central core domain of TFIIE with a novel double-stranded DNA-binding surface
-
Okuda, M. et al. Structure of the central core domain of TFIIE with a novel double-stranded DNA-binding surface. EMBO J. 19, 1346-1356 (2000).
-
(2000)
EMBO J
, vol.19
, pp. 1346-1356
-
-
Okuda, M.1
-
137
-
-
0032584730
-
Analysis of the role of TFIIE in transcriptional regulation through structure-function studies of the TFIIE subunit
-
Okamoto, T. et al. Analysis of the role of TFIIE in transcriptional regulation through structure-function studies of the TFIIE subunit. J. Biol. Chem. 273, 19866-19876 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 19866-19876
-
-
Okamoto, T.1
-
138
-
-
0029865725
-
Localization of subunits of transcription factors IIE and IIF immediately upstream of the transcriptional initiation site of the adenovirus major late promoter
-
Robert, F., Forget, D., Li, J., Greenblatt, J. & Coulombe, B. Localization of subunits of transcription factors IIE and IIF immediately upstream of the transcriptional initiation site of the adenovirus major late promoter. J. Biol. Chem. 271, 8517-8520 (1996).
-
(1996)
J. Biol. Chem
, vol.271
, pp. 8517-8520
-
-
Robert, F.1
Forget, D.2
Li, J.3
Greenblatt, J.4
Coulombe, B.5
-
139
-
-
1642540256
-
Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms
-
Forget, D., Langelier, M. F., Therien, C., Trinh, V. & Coulombe, B. Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms. Mol. Cell. Biol. 24, 1122-1131 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 1122-1131
-
-
Forget, D.1
Langelier, M.F.2
Therien, C.3
Trinh, V.4
Coulombe, B.5
-
140
-
-
79960440046
-
The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation
-
Grohmann, D. et al. The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation. Mol. Cell 43, 263-274 (2011).
-
(2011)
Mol. Cell
, vol.43
, pp. 263-274
-
-
Grohmann, D.1
-
141
-
-
84859460616
-
Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation
-
Murakami, K. et al. Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation. Proc. Natl Acad. Sci. USA 109, 4816-4821 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 4816-4821
-
-
Murakami, K.1
-
142
-
-
84857129620
-
Subunit architecture of general transcription factor TFIIH
-
Gibbons, B. J. et al. Subunit architecture of general transcription factor TFIIH. Proc. Natl Acad. Sci. USA 109, 1949-1954 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 1949-1954
-
-
Gibbons, B.J.1
-
143
-
-
0028885363
-
Different forms of TFIIH for transcription and DNA repair: Holo-TFIIH and a nucleotide excision repairosome
-
Svejstrup, J. Q. et al. Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome. Cell 80, 21-28 (1995).
-
(1995)
Cell
, vol.80
, pp. 21-28
-
-
Svejstrup, J.Q.1
-
144
-
-
0028030069
-
RNA polymerase transcription factor IIH holoenzyme from yeast
-
Svejstrup, J. Q., Feaver, W. J., LaPointe, J. & Kornberg, R. D. RNA polymerase transcription factor IIH holoenzyme from yeast. J. Biol. Chem. 269, 28044-28048 (1994).
-
(1994)
J. Biol. Chem
, vol.269
, pp. 28044-28048
-
-
Svejstrup, J.Q.1
Feaver, W.J.2
Lapointe, J.3
Kornberg, R.D.4
-
145
-
-
0027364921
-
Human xeroderma pigmentosum group D gene encodes a DNA helicase
-
Sung, P. et al. Human xeroderma pigmentosum group D gene encodes a DNA helicase. Nature 365, 852-855 (1993).
-
(1993)
Nature
, vol.365
, pp. 852-855
-
-
Sung, P.1
-
146
-
-
0028232284
-
RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription
-
Guzder, S. N., Sung, P., Bailly, V., Prakash, L. & Prakash, S. RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription. Nature 369, 578-581 (1994).
-
(1994)
Nature
, vol.369
, pp. 578-581
-
-
Guzder, S.N.1
Sung, P.2
Bailly, V.3
Prakash, L.4
Prakash, S.5
-
147
-
-
0028362248
-
The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor
-
Schaeffer, L. et al. The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor. EMBO J. 13, 2388-2392 (1994).
-
(1994)
EMBO J
, vol.13
, pp. 2388-2392
-
-
Schaeffer, L.1
-
148
-
-
0033010723
-
Reconstitution of the transcription factor TFIIH: Assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7
-
Tirode, F., Busso, D., Coin, F. & Egly, J. M. Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7. Mol. Cell 3, 87-95 (1999).
-
(1999)
Mol. Cell
, vol.3
, pp. 87-95
-
-
Tirode, F.1
Busso, D.2
Coin, F.3
Egly, J.M.4
-
149
-
-
0032797828
-
Transcription factor TFIIH is required for promoter melting in vivo
-
Guzman, E. & Lis, J. T. Transcription factor TFIIH is required for promoter melting in vivo. Mol. Cell. Biol. 19, 5652-5658 (1999).
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 5652-5658
-
-
Guzman, E.1
Lis, J.T.2
-
150
-
-
34247513888
-
Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair
-
Coin, F., Oksenych, V. & Egly, J. M. Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair. Mol. Cell 26, 245-256 (2007).
-
(2007)
Mol. Cell
, vol.26
, pp. 245-256
-
-
Coin, F.1
Oksenych, V.2
Egly, J.M.3
-
151
-
-
0026348276
-
CTD kinase associated with yeast RNA polymerase II initiation factor b
-
Feaver, W. J., Gileadi, O., Li, Y. & Kornberg, R. D. CTD kinase associated with yeast RNA polymerase II initiation factor b. Cell 67, 1223-1230 (1991).
-
(1991)
Cell
, vol.67
, pp. 1223-1230
-
-
Feaver, W.J.1
Gileadi, O.2
Li, Y.3
Kornberg, R.D.4
-
152
-
-
0028958673
-
Association of Cdk-activating kinase subunits with transcription factor TFIIH
-
Serizawa, H. et al. Association of Cdk-activating kinase subunits with transcription factor TFIIH. Nature 374, 280-282 (1995).
-
(1995)
Nature
, vol.374
, pp. 280-282
-
-
Serizawa, H.1
-
153
-
-
0029987031
-
MAT1, cdk7 and cyclin H form a kinase complex which is UV light-sensitive upon association with TFIIH
-
Adamczewski, J. P. et al. MAT1, cdk7 and cyclin H form a kinase complex which is UV light-sensitive upon association with TFIIH. EMBO J. 15, 1877-1884 (1996).
-
(1996)
EMBO J
, vol.15
, pp. 1877-1884
-
-
Adamczewski, J.P.1
-
154
-
-
0030998712
-
Substrate specificity of the cdk-activating kinase (CAK) is altered upon association with TFIIH
-
Rossignol, M., Kolb-Cheynel, I. & Egly, J. M. Substrate specificity of the cdk-activating kinase (CAK) is altered upon association with TFIIH. EMBO J. 16, 1628-1637 (1997).
-
(1997)
EMBO J
, vol.16
, pp. 1628-1637
-
-
Rossignol, M.1
Kolb-Cheynel, I.2
Egly, J.M.3
-
155
-
-
0030976052
-
Regulation of CDK7 substrate specificity by MAT1 and TFIIH
-
Yankulov, K. Y. & Bentley, D. L. Regulation of CDK7 substrate specificity by MAT1 and TFIIH. EMBO J. 16, 1638-1646 (1997).
-
(1997)
EMBO J
, vol.16
, pp. 1638-1646
-
-
Yankulov, K.Y.1
Bentley, D.L.2
-
156
-
-
0029038903
-
A kinase-deficient transcription factor TFIIH is functional in basal and activated transcription
-
Makela, T. P. et al. A kinase-deficient transcription factor TFIIH is functional in basal and activated transcription. Proc. Natl Acad. Sci. USA 92, 5174-5178 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 5174-5178
-
-
Makela, T.P.1
-
157
-
-
7944231428
-
The crystal structure of human CDK7 and its protein recognition properties
-
Lolli, G., Lowe, E. D., Brown, N. R. & Johnson, L. N. The crystal structure of human CDK7 and its protein recognition properties. Structure 12, 2067-2079 (2004).
-
(2004)
Structure
, vol.12
, pp. 2067-2079
-
-
Lolli, G.1
Lowe, E.D.2
Brown, N.R.3
Johnson, L.N.4
-
158
-
-
0001212842
-
Three-dimensional structure of human cyclin H, a positive regulator of the CDK-activating kinase
-
Kim, K. K., Chamberlin, H. M., Morgan, D. O. & Kim, S. H. Three-dimensional structure of human cyclin H, a positive regulator of the CDK-activating kinase. Nature Struct. Biol. 3, 849-855 (1996).
-
(1996)
Nature Struct. Biol
, vol.3
, pp. 849-855
-
-
Kim, K.K.1
Chamberlin, H.M.2
Morgan, D.O.3
Kim, S.H.4
-
159
-
-
0030580320
-
The crystal structure of human cyclin H
-
Andersen, G., Poterszman, A., Egly, J. M., Moras, D. & Thierry, J. C. The crystal structure of human cyclin H. FEBS Lett. 397, 65-69 (1996).
-
(1996)
FEBS Lett
, vol.397
, pp. 65-69
-
-
Andersen, G.1
Poterszman, A.2
Egly, J.M.3
Moras, D.4
Thierry, J.C.5
-
160
-
-
0035831429
-
Solution structure of the N-terminal domain of the human TFIIH MAT1 subunit: New insights into the RING finger family
-
Gervais, V. et al. Solution structure of the N-terminal domain of the human TFIIH MAT1 subunit: new insights into the RING finger family. J. Biol. Chem. 276, 7457-7464 (2001).
-
(2001)
J. Biol. Chem
, vol.276
, pp. 7457-7464
-
-
Gervais, V.1
-
161
-
-
33645988522
-
Conserved XPB core structure and motifs for DNA unwinding: Implications for pathway selection of transcription or excision repair
-
Fan, L. et al. Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair. Mol. Cell 22, 27-37 (2006).
-
(2006)
Mol. Cell
, vol.22
, pp. 27-37
-
-
Fan, L.1
-
162
-
-
43949110271
-
Structure of the DNA repair helicase XPD
-
Liu, H. et al. Structure of the DNA repair helicase XPD. Cell 133, 801-812 (2008).
-
(2008)
Cell
, vol.133
, pp. 801-812
-
-
Liu, H.1
-
163
-
-
0034264910
-
Electron crystal structure of the transcription factor and DNA repair complex, core TFIIH
-
Chang, W. H. & Kornberg, R. D. Electron crystal structure of the transcription factor and DNA repair complex, core TFIIH. Cell 102, 609-613 (2000).
-
(2000)
Cell
, vol.102
, pp. 609-613
-
-
Chang, W.H.1
Kornberg, R.D.2
-
164
-
-
0034268691
-
Molecular structure of human TFIIH
-
Schultz, P. et al. Molecular structure of human TFIIH. Cell 102, 599-607 (2000).
-
(2000)
Cell
, vol.102
, pp. 599-607
-
-
Schultz, P.1
-
165
-
-
22144482360
-
TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape
-
Lin, Y. C., Choi, W. S. & Gralla, J. D. TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape. Nature Struct. Mol. Biol. 12, 603-607 (2005).
-
(2005)
Nature Struct. Mol. Biol
, vol.12
, pp. 603-607
-
-
Lin, Y.C.1
Choi, W.S.2
Gralla, J.D.3
-
166
-
-
18844457346
-
X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA
-
Dürr, H., Körner, C., Müller, M., Hickmann, V. & Hopfner, K. P. X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA. Cell 121, 363-373 (2005).
-
(2005)
Cell
, vol.121
, pp. 363-373
-
-
Dürr, H.1
Körner, C.2
Müller, M.3
Hickmann, V.4
Hopfner, K.P.5
-
167
-
-
0033781448
-
Mechanism of promoter melting by the xeroderma pigmentosum complementation group B helicase of transcription factor IIH revealed by protein-DNA photo-cross-linking
-
Douziech, M. et al. Mechanism of promoter melting by the xeroderma pigmentosum complementation group B helicase of transcription factor IIH revealed by protein-DNA photo-cross-linking. Mol. Cell. Biol. 20, 8168-8177 (2000).
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 8168-8177
-
-
Douziech, M.1
-
168
-
-
84860334486
-
Dynamic architecture of a minimal RNA polymerase II open promoter complex
-
Treutlein, B. et al. Dynamic architecture of a minimal RNA polymerase II open promoter complex. Mol. Cell 46, 136-146 (2012).
-
(2012)
Mol. Cell
, vol.46
, pp. 136-146
-
-
Treutlein, B.1
-
169
-
-
38349084363
-
P53 and TFIIE share a common binding site on the Tfb1/p62 subunit of TFIIH
-
Di Lello, P. et al. p53 and TFIIE share a common binding site on the Tfb1/p62 subunit of TFIIH. Proc. Natl Acad. Sci. USA 105, 106-111 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 106-111
-
-
Di Lello, P.1
-
170
-
-
67649946313
-
Recent advances in understanding the structure and function of general transcription factor TFIID
-
Cler, E., Papai, G., Schultz, P. & Davidson, I. Recent advances in understanding the structure and function of general transcription factor TFIID. Cell. Mol. Life Sci. 66, 2123-2134 (2009).
-
(2009)
Cell. Mol. Life Sci
, vol.66
, pp. 2123-2134
-
-
Cler, E.1
Papai, G.2
Schultz, P.3
Davidson, I.4
-
171
-
-
33747881750
-
The general transcription machinery and general cofactors
-
Thomas, M. C. & Chiang, C. M. The general transcription machinery and general cofactors. Crit. Rev. Biochem. Mol. Biol. 41, 105-178 (2006).
-
(2006)
Crit. Rev. Biochem. Mol. Biol
, vol.41
, pp. 105-178
-
-
Thomas, M.C.1
Chiang, C.M.2
-
172
-
-
0037087628
-
A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription
-
Tora, L. A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev. 16, 673-675 (2002).
-
(2002)
Genes Dev
, vol.16
, pp. 673-675
-
-
Tora, L.1
-
173
-
-
0030251342
-
Human TAFII105 is a cell type-specific TFIID subunit related to hTAFII130
-
Dikstein, R., Zhou, S. & Tjian, R. Human TAFII105 is a cell type-specific TFIID subunit related to hTAFII130. Cell 87, 137-146 (1996).
-
(1996)
Cell
, vol.87
, pp. 137-146
-
-
Dikstein, R.1
Zhou, S.2
Tjian, R.3
-
174
-
-
77954763022
-
Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation
-
Goodrich, J. A. & Tjian, R. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nature Rev. Genet. 11, 549-558 (2010).
-
(2010)
Nature Rev. Genet
, vol.11
, pp. 549-558
-
-
Goodrich, J.A.1
Tjian, R.2
-
175
-
-
0030963806
-
Transcription properties of a cell type-specific TATA-binding protein, TRF
-
Hansen, S. K., Takada, S., Jacobson, R. H., Lis, J. T. & Tjian, R. Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell 91, 71-83 (1997).
-
(1997)
Cell
, vol.91
, pp. 71-83
-
-
Hansen, S.K.1
Takada, S.2
Jacobson, R.H.3
Lis, J.T.4
Tjian, R.5
-
176
-
-
0034608084
-
Promoter-selective properties of the TBP-related factor TRF1
-
Holmes, M. C. & Tjian, R. Promoter-selective properties of the TBP-related factor TRF1. Science 288, 867-870 (2000).
-
(2000)
Science
, vol.288
, pp. 867-870
-
-
Holmes, M.C.1
Tjian, R.2
-
177
-
-
1542285166
-
A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae
-
Huisinga, K. L. & Pugh, B. F. A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol. Cell 13, 573-585 (2004).
-
(2004)
Mol. Cell
, vol.13
, pp. 573-585
-
-
Huisinga, K.L.1
Pugh, B.F.2
-
178
-
-
77956649878
-
Developmental regulation of transcription initiation: More than just changing the actors
-
Müller, F., Zaucker, A. & Tora, L. Developmental regulation of transcription initiation: more than just changing the actors. Curr. Opin. Genet. Dev. 20, 533-540 (2010).
-
(2010)
Curr. Opin. Genet. Dev
, vol.20
, pp. 533-540
-
-
Müller, F.1
Zaucker, A.2
Tora, L.3
-
179
-
-
84881539862
-
Non-canonical TAF complexes regulate active promoters in human embryonic stem cells
-
Maston, G. A. et al. Non-canonical TAF complexes regulate active promoters in human embryonic stem cells. eLife 1, e00068 (2012).
-
(2012)
ELife
, vol.1
, pp. e00068
-
-
Maston, G.A.1
-
180
-
-
33846214719
-
Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters
-
Yang, C., Bolotin, E., Jiang, T., Sladek, F. M. & Martinez, E. Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters. Gene 389, 52-65 (2007).
-
(2007)
Gene
, vol.389
, pp. 52-65
-
-
Yang, C.1
Bolotin, E.2
Jiang, T.3
Sladek, F.M.4
Martinez, E.5
-
181
-
-
77954918638
-
Structure and basal transcription complex of RNA polymerase II core promoters in the mammalian genome: An overview
-
Baumann, M., Pontiller, J. & Ernst, W. Structure and basal transcription complex of RNA polymerase II core promoters in the mammalian genome: an overview. Mol. Biotechnol. 45, 241-247 (2010).
-
(2010)
Mol. Biotechnol
, vol.45
, pp. 241-247
-
-
Baumann, M.1
Pontiller, J.2
Ernst, W.3
-
182
-
-
84858444088
-
Perspectives on the RNA polymerase II core promoter. Wiley Interdiscip
-
Kadonaga, J. T. Perspectives on the RNA polymerase II core promoter. Wiley Interdiscip. Rev. Dev. Biol. 1, 40-51 (2012).
-
(2012)
Rev. Dev. Biol
, vol.1
, pp. 40-51
-
-
Kadonaga, J.T.1
-
183
-
-
0024557039
-
The initiator as a transcription control element
-
Smale, S. T. & Baltimore, D. The "initiator" as a transcription control element. Cell 57, 103-113 (1989).
-
(1989)
Cell
, vol.57
, pp. 103-113
-
-
Smale, S.T.1
Baltimore, D.2
-
184
-
-
0033200098
-
DNA binding site selection by RNA polymerase II TAFs: A TAFII250-TAFII150 complex recognizes the initiator
-
Chalkley, G. E. & Verrijzer, C. P. DNA binding site selection by RNA polymerase II TAFs: a TAFII250-TAFII150 complex recognizes the initiator. EMBO J. 18, 4835-4845 (1999).
-
(1999)
EMBO J
, vol.18
, pp. 4835-4845
-
-
Chalkley, G.E.1
Verrijzer, C.P.2
-
185
-
-
3042784063
-
The MTE, a new core promoter element for transcription by RNA polymerase II
-
Lim, C. Y. et al. The MTE, a new core promoter element for transcription by RNA polymerase II. Genes Dev. 18, 1606-1617 (2004).
-
(2004)
Genes Dev
, vol.18
, pp. 1606-1617
-
-
Lim, C.Y.1
-
186
-
-
0029971668
-
Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters
-
Burke, T. W. & Kadonaga, J. T. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes Dev. 10, 711-724 (1996).
-
(1996)
Genes Dev
, vol.10
, pp. 711-724
-
-
Burke, T.W.1
Kadonaga, J.T.2
-
187
-
-
0030669466
-
The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila
-
Burke, T. W. & Kadonaga, J. T. The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila. Genes Dev. 11, 3020-3031 (1997).
-
(1997)
Genes Dev
, vol.11
, pp. 3020-3031
-
-
Burke, T.W.1
Kadonaga, J.T.2
-
188
-
-
77954355150
-
Three key subregions contribute to the function of the downstream RNA polymerase II core promoter
-
Theisen, J. W., Lim, C. Y. & Kadonaga, J. T. Three key subregions contribute to the function of the downstream RNA polymerase II core promoter. Mol. Cell. Biol. 30, 3471-3479 (2010).
-
(2010)
Mol. Cell. Biol
, vol.30
, pp. 3471-3479
-
-
Theisen, J.W.1
Lim, C.Y.2
Kadonaga, J.T.3
-
189
-
-
0034691081
-
A downstream element in the human-globin promoter: Evidence of extended sequence-specific transcription factor IID contacts
-
Lewis, B. A., Kim, T. K. & Orkin, S. H. A downstream element in the human-globin promoter: evidence of extended sequence-specific transcription factor IID contacts. Proc. Natl Acad. Sci. USA 97, 7172-7177 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 7172-7177
-
-
Lewis, B.A.1
Kim, T.K.2
Orkin, S.H.3
-
190
-
-
27144506577
-
Functional characterization of core promoter elements: The downstream core element is recognized by TAF1
-
Lee, D. H. et al. Functional characterization of core promoter elements: the downstream core element is recognized by TAF1. Mol. Cell. Biol. 25, 9674-9686 (2005).
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 9674-9686
-
-
Lee, D.H.1
-
191
-
-
77953711351
-
TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation
-
Papai, G. et al. TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation. Nature 465, 956-960 (2010).
-
(2010)
Nature
, vol.465
, pp. 956-960
-
-
Papai, G.1
-
192
-
-
67649643626
-
Structures of three distinct activator-TFIID complexes
-
Liu, W. L. et al. Structures of three distinct activator-TFIID complexes. Genes Dev. 23, 1510-1521 (2009).
-
(2009)
Genes Dev
, vol.23
, pp. 1510-1521
-
-
Liu, W.L.1
-
193
-
-
0028355555
-
Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATA-box binding
-
Kokubo, T., Yamashita, S., Horikoshi, M., Roeder, R. G. & Nakatani, Y. Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATA-box binding. Proc. Natl Acad. Sci. USA 91, 3520-3524 (1994).
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 3520-3524
-
-
Kokubo, T.1
Yamashita, S.2
Horikoshi, M.3
Roeder, R.G.4
Nakatani, Y.5
-
194
-
-
0033610789
-
Identification of highly conserved amino-terminal segments of dTAFII230 and yTAFII145 that are functionally interchangeable for inhibiting TBP-DNA interactions in vitro and in promoting yeast cell growth in vivo
-
Kotani, T. et al. Identification of highly conserved amino-terminal segments of dTAFII230 and yTAFII145 that are functionally interchangeable for inhibiting TBP-DNA interactions in vitro and in promoting yeast cell growth in vivo. J. Biol. Chem. 273, 32254-32264 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 32254-32264
-
-
Kotani, T.1
-
195
-
-
0032483558
-
Solution structure of a TBP-TAFII230 complex: Protein mimicry of the minor groove surface of the TATA box unwound by TBP
-
Liu, D. et al. Solution structure of a TBP-TAFII230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP. Cell 94, 573-583 (1998).
-
(1998)
Cell
, vol.94
, pp. 573-583
-
-
Liu, D.1
-
196
-
-
84881474760
-
High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation
-
Anandapadamanaban, M. et al. High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation. Nature Struct. Mol. Biol. 20, 1008-1014 (2013).
-
(2013)
Nature Struct. Mol. Biol
, vol.20
, pp. 1008-1014
-
-
Anandapadamanaban, M.1
-
197
-
-
0033963045
-
TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP
-
Bagby, S. et al. TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP. FEBS Lett. 468, 149-154 (2000).
-
(2000)
FEBS Lett
, vol.468
, pp. 149-154
-
-
Bagby, S.1
-
198
-
-
0031883573
-
The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein
-
Kokubo, T., Swanson, M. J., Nishikawa, J. I., Hinnebusch, A. G. & Nakatani, Y. The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein. Mol. Cell. Biol. 18, 1003-1012 (1998).
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 1003-1012
-
-
Kokubo, T.1
Swanson, M.J.2
Nishikawa, J.I.3
Hinnebusch, A.G.4
Nakatani, Y.5
-
199
-
-
0032486264
-
Transcription factor IIA derepresses TATA-binding protein (TBP)-associated factor inhibition of TBP-DNA binding
-
Ozer, J., Mitsouras, K., Zerby, D., Carey, M. & Lieberman, P. M. Transcription factor IIA derepresses TATA-binding protein (TBP)-associated factor inhibition of TBP-DNA binding. J. Biol. Chem. 273, 14293-14300 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 14293-14300
-
-
Ozer, J.1
Mitsouras, K.2
Zerby, D.3
Carey, M.4
Lieberman, P.M.5
-
200
-
-
0035312923
-
The histone fold is a key structural motif of transcription factor TFIID
-
Gangloff, Y. G., Romier, C., Thuault, S., Werten, S. & Davidson, I. The histone fold is a key structural motif of transcription factor TFIID. Trends Biochem. Sci. 26, 250-257 (2001).
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 250-257
-
-
Gangloff, Y.G.1
Romier, C.2
Thuault, S.3
Werten, S.4
Davidson, I.5
-
201
-
-
0035135515
-
Histone folds mediate selective heterodimerization of yeast TAFII25 with TFIID components yTAFII47 and yTAFII65 and with SAGA component ySPT7
-
Gangloff, Y. G. et al. Histone folds mediate selective heterodimerization of yeast TAFII25 with TFIID components yTAFII47 and yTAFII65 and with SAGA component ySPT7. Mol. Cell. Biol. 21, 1841-1853 (2001).
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 1841-1853
-
-
Gangloff, Y.G.1
-
202
-
-
0029887687
-
A histone octamer-like structure within TFIID
-
Hoffmann, A. et al. A histone octamer-like structure within TFIID. Nature 380, 356-359 (1996).
-
(1996)
Nature
, vol.380
, pp. 356-359
-
-
Hoffmann, A.1
-
203
-
-
0034892335
-
A histone fold TAF octamer within the yeast TFIID transcriptional coactivator
-
Selleck, W. et al. A histone fold TAF octamer within the yeast TFIID transcriptional coactivator. Nature Struct. Biol. 8, 695-700 (2001).
-
(2001)
Nature Struct. Biol
, vol.8
, pp. 695-700
-
-
Selleck, W.1
-
204
-
-
0029869460
-
Structural similarity between TAFs and the heterotetrameric core of the histone octamer
-
Xie, X. et al. Structural similarity between TAFs and the heterotetrameric core of the histone octamer. Nature 380, 316-322 (1996).
-
(1996)
Nature
, vol.380
, pp. 316-322
-
-
Xie, X.1
-
205
-
-
0032765083
-
Three-dimensional structure of the human TFIID-IIA-IIB complex
-
Andel, F., Ladurner, A. G., Inouye, C., Tjian, R. & Nogales, E. Three-dimensional structure of the human TFIID-IIA-IIB complex. Science 286, 2153-2156 (1999).
-
(1999)
Science
, vol.286
, pp. 2153-2156
-
-
Andel, F.1
Ladurner, A.G.2
Inouye, C.3
Tjian, R.4
Nogales, E.5
-
206
-
-
0032589574
-
Three-dimensional structures of the TAFII-containing complexes TFIID and TFTC
-
Brand, M., Leurent, C., Mallouh, V., Tora, L. & Schultz, P. Three-dimensional structures of the TAFII-containing complexes TFIID and TFTC. Science 286, 2151-2153 (1999).
-
(1999)
Science
, vol.286
, pp. 2151-2153
-
-
Brand, M.1
Leurent, C.2
Mallouh, V.3
Tora, L.4
Schultz, P.5
-
207
-
-
0036646106
-
Mapping histone fold TAFs within yeast TFIID
-
Leurent, C. et al. Mapping histone fold TAFs within yeast TFIID. EMBO J. 21, 3424-3433 (2002).
-
(2002)
EMBO J
, vol.21
, pp. 3424-3433
-
-
Leurent, C.1
-
208
-
-
84872505828
-
Human TFIID binds to core promoter DNA in a reorganized structural state
-
Cianfrocco, M. A. et al. Human TFIID binds to core promoter DNA in a reorganized structural state. Cell 152, 120-131 (2013).
-
(2013)
Cell
, vol.152
, pp. 120-131
-
-
Cianfrocco, M.A.1
-
209
-
-
70350707312
-
Cryo-EM reveals promoter DNA binding and conformational flexibility of the general transcription factor TFIID
-
Elmlund, H. et al. Cryo-EM reveals promoter DNA binding and conformational flexibility of the general transcription factor TFIID. Structure 17, 1442-1452 (2009).
-
(2009)
Structure
, vol.17
, pp. 1442-1452
-
-
Elmlund, H.1
-
210
-
-
33750345805
-
Rational design of a super core promoter that enhances gene expression
-
Juven-Gershon, T., Cheng, S. & Kadonaga, J. T. Rational design of a super core promoter that enhances gene expression. Nature Methods 3, 917-922 (2006).
-
(2006)
Nature Methods
, vol.3
, pp. 917-922
-
-
Juven-Gershon, T.1
Cheng, S.2
Kadonaga, J.T.3
-
211
-
-
84873093285
-
The architecture of human general transcription factor TFIID core complex
-
Bieniossek, C. et al. The architecture of human general transcription factor TFIID core complex. Nature 493, 699-702 (2013).
-
(2013)
Nature
, vol.493
, pp. 699-702
-
-
Bieniossek, C.1
-
212
-
-
0036318573
-
Molecular characterization of Saccharomyces cerevisiae TFIID
-
Sanders, S. L., Garbett, K. A. & Weil, P. A. Molecular characterization of Saccharomyces cerevisiae TFIID. Mol. Cell. Biol. 22, 6000-6013 (2002).
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 6000-6013
-
-
Sanders, S.L.1
Garbett, K.A.2
Weil, P.A.3
-
213
-
-
69449096401
-
Structure of the C-terminal domain of transcription factor IIB from Trypanosoma brucei
-
Ibrahim, B. S. et al. Structure of the C-terminal domain of transcription factor IIB from Trypanosoma brucei. Proc. Natl Acad. Sci. USA 106, 13242-13247 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 13242-13247
-
-
Ibrahim, B.S.1
-
214
-
-
1642323546
-
Probing Zn2+-binding effects on the zinc-ribbon domain of human general transcription factor TFIIB
-
Ghosh, M. et al. Probing Zn2+-binding effects on the zinc-ribbon domain of human general transcription factor TFIIB. Biochem. J. 378, 317-324 (2004).
-
(2004)
Biochem. J
, vol.378
, pp. 317-324
-
-
Ghosh, M.1
-
215
-
-
0032474445
-
Human general transcription factor TFIIB: Conformational variability and interaction with VP16 activation domain
-
Hayashi, F. et al. Human general transcription factor TFIIB: conformational variability and interaction with VP16 activation domain. Biochemistry 37, 7941-7951 (1998).
-
(1998)
Biochemistry
, vol.37
, pp. 7941-7951
-
-
Hayashi, F.1
-
216
-
-
12344268841
-
Structural properties of the promiscuous VP16 activation domain
-
Jonker, H. R., Wechselberger, R. W., Boelens, R., Folkers, G. E. & Kaptein, R. Structural properties of the promiscuous VP16 activation domain. Biochemistry 44, 827-839 (2005).
-
(2005)
Biochemistry
, vol.44
, pp. 827-839
-
-
Jonker, H.R.1
Wechselberger, R.W.2
Boelens, R.3
Folkers, G.E.4
Kaptein, R.5
-
217
-
-
0345701300
-
Molecular mechanism of recruitment of TFIIF-associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF
-
Kamada, K., Roeder, R. G. & Burley, S. K. Molecular mechanism of recruitment of TFIIF-associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF. Proc. Natl Acad. Sci. USA 100, 2296-2299 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 2296-2299
-
-
Kamada, K.1
Roeder, R.G.2
Burley, S.K.3
-
218
-
-
0347367040
-
Solution structure of the carboxyl-terminal domain of RAP74 and NMR characterization of the FCP1-binding sites of RAP74 and human TFIIB
-
Nguyen, B. D. et al. Solution structure of the carboxyl-terminal domain of RAP74 and NMR characterization of the FCP1-binding sites of RAP74 and human TFIIB. Biochemistry 42, 1460-1469 (2003).
-
(2003)
Biochemistry
, vol.42
, pp. 1460-1469
-
-
Nguyen, B.D.1
-
219
-
-
64549121509
-
NMR structure of a complex formed by the carboxyl-terminal domain of human RAP74 and a phosphorylated peptide from the central domain of the FCP1 phosphatase
-
Yang, A. et al. NMR structure of a complex formed by the carboxyl-terminal domain of human RAP74 and a phosphorylated peptide from the central domain of the FCP1 phosphatase. Biochemistry 48, 1964-1974 (2009).
-
(2009)
Biochemistry
, vol.48
, pp. 1964-1974
-
-
Yang, A.1
-
220
-
-
51349101549
-
Structural basis for group A trichothiodystrophy
-
Kainov, D. E., Vitorino, M., Cavarelli, J., Poterszman, A. & Egly, J. M. Structural basis for group A trichothiodystrophy. Nature Struct. Mol. Biol. 15, 980-984 (2008).
-
(2008)
Nature Struct. Mol. Biol
, vol.15
, pp. 980-984
-
-
Kainov, D.E.1
Vitorino, M.2
Cavarelli, J.3
Poterszman, A.4
Egly, J.M.5
-
221
-
-
45849119445
-
Crystal structure of the FeS cluster-containing nucleotide excision repair helicase XPD
-
Wolski, S. C. et al. Crystal structure of the FeS cluster-containing nucleotide excision repair helicase XPD. PLoS Biol. 6, e149 (2008).
-
(2008)
PLoS Biol
, vol.6
, pp. e149
-
-
Wolski, S.C.1
-
222
-
-
84873574630
-
Structure of the C-terminal half of human XPB helicase and the impact of the disease-causing mutation XP11BE
-
Hilario, E., Li, Y., Nobumori, Y., Liu, X. & Fan, L. Structure of the C-terminal half of human XPB helicase and the impact of the disease-causing mutation XP11BE. Acta Crystallogr. D Biol. Crystallogr. 69, 237-246 (2013).
-
(2013)
Acta Crystallogr. D Biol. Crystallogr
, vol.69
, pp. 237-246
-
-
Hilario, E.1
Li, Y.2
Nobumori, Y.3
Liu, X.4
Fan, L.5
-
223
-
-
3042547173
-
TFIIH contains a PH domain involved in DNA nucleotide excision repair
-
Gervais, V. et al. TFIIH contains a PH domain involved in DNA nucleotide excision repair. Nature Struct. Mol. Biol. 11, 616-622 (2004).
-
(2004)
Nature Struct. Mol. Biol
, vol.11
, pp. 616-622
-
-
Gervais, V.1
-
224
-
-
19644388865
-
NMR structure of the amino-terminal domain from the Tfb1 subunit of TFIIH and characterization of its phosphoinositide and VP16 binding sites
-
Di Lello, P. et al. NMR structure of the amino-terminal domain from the Tfb1 subunit of TFIIH and characterization of its phosphoinositide and VP16 binding sites. Biochemistry 44, 7678-7686 (2005).
-
(2005)
Biochemistry
, vol.44
, pp. 7678-7686
-
-
Di Lello, P.1
-
225
-
-
19544366827
-
Solution structure of the C-terminal domain of TFIIH P44 subunit reveals a novel type of C4C4 ring domain involved in protein-protein interactions
-
Kellenberger, E. et al. Solution structure of the C-terminal domain of TFIIH P44 subunit reveals a novel type of C4C4 ring domain involved in protein-protein interactions. J. Biol. Chem. 280, 20785-20792 (2005).
-
(2005)
J. Biol. Chem
, vol.280
, pp. 20785-20792
-
-
Kellenberger, E.1
-
226
-
-
33745214419
-
Structure of the Tfb1/p53 complex: Insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53
-
Di Lello, P. et al. Structure of the Tfb1/p53 complex: insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53. Mol. Cell 22, 731-740 (2006).
-
(2006)
Mol. Cell
, vol.22
, pp. 731-740
-
-
Di Lello, P.1
-
227
-
-
33947578325
-
Solution structure and self-association properties of the p8 TFIIH subunit responsible for trichothiodystrophy
-
Vitorino, M. et al. Solution structure and self-association properties of the p8 TFIIH subunit responsible for trichothiodystrophy. J. Mol. Biol. 368, 473-480 (2007).
-
(2007)
J. Mol. Biol
, vol.368
, pp. 473-480
-
-
Vitorino, M.1
-
228
-
-
49449118629
-
NMR structure of the complex between the Tfb1 subunit of TFIIH and the activation domain of VP16: Structural similarities between VP16 and p53
-
Langlois, C. et al. NMR structure of the complex between the Tfb1 subunit of TFIIH and the activation domain of VP16: structural similarities between VP16 and p53. J. Am. Chem. Soc. 130, 10596-10604 (2008).
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 10596-10604
-
-
Langlois, C.1
-
229
-
-
84863200502
-
Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2
-
Lafrance-Vanasse, J. et al. Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2. Nucleic Acids Res. 40, 5739-5750 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5739-5750
-
-
Lafrance-Vanasse, J.1
-
230
-
-
84876384740
-
Structural and functional evidence that Rad4 competes with Rad2 for binding to the Tfb1 subunit of TFIIH in NER
-
Lafrance-Vanasse, J., Arseneault, G., Cappadocia, L., Legault, P. & Omichinski, J. G. Structural and functional evidence that Rad4 competes with Rad2 for binding to the Tfb1 subunit of TFIIH in NER. Nucleic Acids Res. 41, 2736-2745 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 2736-2745
-
-
Lafrance-Vanasse, J.1
Arseneault, G.2
Cappadocia, L.3
Legault, P.4
Omichinski, J.G.5
-
231
-
-
84897434052
-
Structural and functional characterization of a complex between the acidic transactivation domain of EBNA2 and the Tfb1/p62 subunit of TFIIH
-
Chabot, P. R. et al. Structural and functional characterization of a complex between the acidic transactivation domain of EBNA2 and the Tfb1/p62 subunit of TFIIH. PLoS Pathog. 10, e1004042 (2014).
-
(2014)
PLoS Pathog
, vol.10
, pp. e1004042
-
-
Chabot, P.R.1
-
232
-
-
0032563164
-
Human TAFII28 and TAFII18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family
-
Birck, C. et al. Human TAFII28 and TAFII18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family. Cell 94, 239-249 (1998).
-
(1998)
Cell
, vol.94
, pp. 239-249
-
-
Birck, C.1
-
233
-
-
0034717183
-
Structure and function of a human TAFII250 double bromodomain module
-
Jacobson, R. H., Ladurner, A. G., King, D. S. & Tjian, R. Structure and function of a human TAFII250 double bromodomain module. Science 288, 1422-1425 (2000).
-
(2000)
Science
, vol.288
, pp. 1422-1425
-
-
Jacobson, R.H.1
Ladurner, A.G.2
King, D.S.3
Tjian, R.4
-
234
-
-
0037160103
-
Crystal structure of a subcomplex of human transcription factor TFIID formed by TATA binding protein-associated factors hTAF4 (hTAFII135) and hTAF12 (hTAFII20)
-
Werten, S. et al. Crystal structure of a subcomplex of human transcription factor TFIID formed by TATA binding protein-associated factors hTAF4 (hTAFII135) and hTAF12 (hTAFII20). J. Biol. Chem. 277, 45502-45509 (2002).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 45502-45509
-
-
Werten, S.1
-
235
-
-
33846587568
-
Structural analysis and dimerization potential of the human TAF5 subunit of TFIID
-
Bhattacharya, S., Takada, S. & Jacobson, R. H. Structural analysis and dimerization potential of the human TAF5 subunit of TFIID. Proc. Natl Acad. Sci. USA 104, 1189-1194 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 1189-1194
-
-
Bhattacharya, S.1
Takada, S.2
Jacobson, R.H.3
-
236
-
-
34247275734
-
Crystal structure, biochemical and genetic characterization of yeast and E. Cuniculi TAFII5 N-terminal domain: Implications for TFIID assembly
-
Romier, C. et al. Crystal structure, biochemical and genetic characterization of yeast and E. cuniculi TAFII5 N-terminal domain: implications for TFIID assembly. J. Mol. Biol. 368, 1292-1306 (2007).
-
(2007)
J. Mol. Biol
, vol.368
, pp. 1292-1306
-
-
Romier, C.1
-
237
-
-
34249943644
-
Conserved region i of human coactivator TAF4 binds to a short hydrophobic motif present in transcriptional regulators
-
Wang, X. et al. Conserved region I of human coactivator TAF4 binds to a short hydrophobic motif present in transcriptional regulators. Proc. Natl Acad. Sci. USA 104, 7839-7844 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 7839-7844
-
-
Wang, X.1
-
238
-
-
77952335828
-
Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction
-
Akai, Y. et al. Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction. Proc. Natl Acad. Sci. USA 107, 8153-8158 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 8153-8158
-
-
Akai, Y.1
-
239
-
-
84859181036
-
Histone recognition and large-scale structural analysis of the human bromodomain family
-
Filippakopoulos, P. et al. Histone recognition and large-scale structural analysis of the human bromodomain family. Cell 149, 214-231 (2012).
-
(2012)
Cell
, vol.149
, pp. 214-231
-
-
Filippakopoulos, P.1
-
240
-
-
84864975153
-
TFIID TAF6-TAF9 complex formation involves the HEAT repeat-containing C-terminal domain of TAF6 and is modulated by TAF5 protein
-
Scheer, E., Delbac, F., Tora, L., Moras, D. & Romier, C. TFIID TAF6-TAF9 complex formation involves the HEAT repeat-containing C-terminal domain of TAF6 and is modulated by TAF5 protein. J. Biol. Chem. 287, 27580-27592 (2012).
-
(2012)
J. Biol. Chem
, vol.287
, pp. 27580-27592
-
-
Scheer, E.1
Delbac, F.2
Tora, L.3
Moras, D.4
Romier, C.5
-
241
-
-
84903447587
-
Structural and functional insight into TAF1-TAF7, a subcomplex of transcription factor II D
-
Bhattacharya, S. et al. Structural and functional insight into TAF1-TAF7, a subcomplex of transcription factor II D. Proc. Natl Acad. Sci. USA 111, 9103-9108 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 9103-9108
-
-
Bhattacharya, S.1
-
242
-
-
48149105342
-
Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3
-
van Ingen, H. et al. Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3. Structure 16, 1245-1256 (2008).
-
(2008)
Structure
, vol.16
, pp. 1245-1256
-
-
Van Ingen, H.1
-
243
-
-
79955542044
-
Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae
-
Zhang, W., Zhang, J., Zhang, X., Xu, C. & Tu, X. Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae. Biochem. J. 436, 83-90 (2011).
-
(2011)
Biochem. J
, vol.436
, pp. 83-90
-
-
Zhang, W.1
Zhang, J.2
Zhang, X.3
Xu, C.4
Tu, X.5
-
244
-
-
33644838451
-
Cryo-electron microscopy studies of human TFIID: Conformational breathing in the integration of gene regulatory cues
-
Grob, P. et al. Cryo-electron microscopy studies of human TFIID: conformational breathing in the integration of gene regulatory cues. Structure 14, 511-520 (2006).
-
(2006)
Structure
, vol.14
, pp. 511-520
-
-
Grob, P.1
-
245
-
-
61449229714
-
Mapping the initiator binding Taf2 subunit in the structure of hydrated yeast TFIID
-
Papai, G. et al. Mapping the initiator binding Taf2 subunit in the structure of hydrated yeast TFIID. Structure 17, 363-373 (2009).
-
(2009)
Structure
, vol.17
, pp. 363-373
-
-
Papai, G.1
-
246
-
-
79953713243
-
Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly
-
Bernecky, C., Grob, P., Ebmeier, C. C., Nogales, E. & Taatjes, D. J. Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biol. 9, e1000603 (2011).
-
(2011)
PLoS Biol
, vol.9
, pp. e1000603
-
-
Bernecky, C.1
Grob, P.2
Ebmeier, C.C.3
Nogales, E.4
Taatjes, D.J.5
-
247
-
-
84858293251
-
Activator-Mediator binding stabilizes RNA polymerase II orientation within the human Mediator-RNA polymerase II-TFIIF assembly
-
Bernecky, C. & Taatjes, D. J. Activator-Mediator binding stabilizes RNA polymerase II orientation within the human Mediator-RNA polymerase II-TFIIF assembly. J. Mol. Biol. 417, 387-394 (2012).
-
(2012)
J. Mol. Biol
, vol.417
, pp. 387-394
-
-
Bernecky, C.1
Taatjes, D.J.2
-
248
-
-
84861082442
-
Interaction of the Mediator Head module with RNA polymerase II
-
Cai, G. et al. Interaction of the Mediator Head module with RNA polymerase II. Structure 20, 899-910 (2012).
-
(2012)
Structure
, vol.20
, pp. 899-910
-
-
Cai, G.1
-
249
-
-
84923358406
-
Architecture of the RNA polymerase II-Mediator core initiation complex
-
Plaschka, C. et al. Architecture of the RNA polymerase II-Mediator core initiation complex. Nature http://dx.doi.org/10.1038/nature14229 (2015).
-
(2015)
Nature
-
-
Plaschka, C.1
|