Transcription properties of a cell type-specific TATA-binding protein, TRF

Cell

Volumn 91, Issue 1, 1997, Pages 71-83

  Hansen, Stig K ^a   Takada, Shinako ^a   Jacobson, Raymond H ^a   Lis, John T ^b   Tjian, Robert ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TATA BINDING PROTEIN;

ANIMAL CELL; ANTIGEN ANTIBODY COMPLEX; ARTICLE; DROSOPHILA MELANOGASTER; ENHANCER REGION; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC TRANSFECTION; NONHUMAN; POLYTENE CHROMOSOME; PRIORITY JOURNAL; PROMOTER REGION; RNA TRANSCRIPTION;

ANIMALIA; DROSOPHILA MELANOGASTER; EUKARYOTA; MELANOGASTER;

EID: 0030963806     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(01)80010-6     Document Type: Article

References (50)

1. Attardi, L.D., and Tjian, R. (1993). Drosophila tissue-specific transcription factor NTF-1 contains a novel isoleucine-rich activation motif. Genes Dev. 7, 1341-1353.
2. Austin, R., and Biggin, M.D. (1996). Purification of the Drosophila RNA polymerase II general transcription factors. Proc. Natl. Acad. Sci. USA 93, 5788-5792.
3. Biggin, M.D., and Tjian, R. (1989). A purified Drosophila homeodomain protein represses transcription in vitro. Cell 58, 433-440.
4. Bray, S.J., Johnson, W.A., Hirsh, J., Heberlein, U., and Tjian, R. (1988). A cis-acting element and associated binding factor required for CNS expression of the Drosophila melanogaster dopa decarboxylase gene. EMBO J. 7, 177-188.
5. Burke, T., and Kadonaga, J. (1996). Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA box-deficient promoters. Genes Dev. 10, 711-724.
6. Courey, A.J., and Tjian, R. (1988). Analysis of Sp1 in vivo reveals multiple transcription domains, including a novel glutamine-rich activation motif. Cell 55, 887-898.
7. Crowley, T.E., Hoey, T., Liu, J.K., Jan, Y.N., Jan, L.Y., and Tjian, R. (1993). A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila. Nature 361, 557-561.
8. II130. Cell 87, 137-146.
9. Driever, W., and Nusslein-Volhard, C. (1989). The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo. Nature 337, 138-143.
10. Dynlacht, B.D., Attardi, L.D., Admon, A., Freeman, M., and Tjian, R. (1989). Functional analysis of NTF-1, a developmentally regulated Drosophila transcription factor that binds neuronal cis elements. Genes Dev. 3, 1677-1688.
11. Dynlacht, B.D., Hoey, T., and Tjian, R. (1991). Isolation of coactivators associated with the TATA-binding protein that mediate transcriptional activation. Cell 55, 563-576.
12. Field, J., Nikawa, J., Broek, D., MacDonald, B., Rodgers, L., Wilson, I.A., Lerner, R.A., and Wigler, M. (1988). Purification of a RAS-responsive adenylyl cyclase complex from Saccharomyces cerevisiae by use of an epitope addition method. Mol. Cell. Biol. 8, 2159-2165.
13. Geiger, J.H., Hahn, S., Lee, S., and Sigler, P.B. (1996). Crystal structure of the yeast TFIIA/TBP/DNA complex. Science 272, 830-836.
14. Goodrich, J.A., Cutler, G., and Tjian, R. (1996). Contacts in context: promoter specificity and macromolecular interactions in transcription. Cell 84, 825-830.
15. Gross, C., Lonetto, M., and Losick, R. (1992). Bacterial sigma factors. In Transcriptional Regulation, S. McKnight and K. Yamamoto, eds. (Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press), pp. 129-176.
16. Hansen, S.K., and Tjian, R. (1995). TAFs and TFIIA mediate differential utilization of the tandem Adh promoters. Cell 82, 565-575.
17. Heberlein, U., and Tjian, R. (1988). Temporal pattern of alcohol dehydrogenase gene transcription reproduced by Drosophila stage-specific embryonic extracts. Nature 331, 410-415.
18. Heberlein, U., England, B., and Tjian, R. (1985). Characterization of Drosophila transcription factors that activate the tandem promoters of the alcohol dehydrogenase gene. Cell 41, 965-977.
19. Hernandez, N. (1993). TBP, a universal eukaryotic transcription factor? Genes Dev. 7, 1291-1308.
20. Hoey, T., Dynlacht, B.D., Peterson, M.G., Pugh, B.F., and Tjian, R. (1990). Isolation and characterization of the Drosophila gene encoding the TATA box-binding protein, TFIID. Cell 61, 1179-1186.
21. Hoey, T., Weinzierl, R.O.J., Gill, G., Chen, J.-L., Dynlacht, B.D., and Tjian, R. (1993). Molecular cloning and functional analysis of Drosophila TAF110 reveal properties expected of coactivators. Cell 72, 247-270.
22. II30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor. Cell 79, 107-117.
23. Kim, J.L., Nikolov, D.B., and Burley, S.K. (1993a). Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365, 520-527.
24. Kim, Y., Geiger, J.H., Hahn, S., and Sigler, P.B. (1993b). Crystal structure of a yeast TBP/TATA box complex. Nature 365, 512-520.
25. Kopczynski, C.C., Davis, G.W., and Goodman, C.S. (1996). A neural tetraspanin, encoded by late bloomer, that facilitates synapse formation. Science 271, 1867-1870.
26. Lee, D., Dejong, S., Hashimoto, M., Horikoshi, M., and Roeder, R. (1992). TFIIA induces conformational changes in TFIID via interactions with the basic repeat. Mol. Cell. Biol. 12, 5189-5196.
27. Lillie, J., and Green, M. (1989). Transcription activation by the adenovirus E1a protein. Nature 338, 39-44.
28. Lin, Y.S., Carey, M.F., Ptashne, M., and Green, M.R. (1988). GAL4 derivatives function alone and synergistically with mammalian activators in vitro. Cell 54, 659-664.
29. Martinez, E., Chiang, C.-M., Ge, H., and Roeder, R.G. (1994). TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter. EMBO J. 13, 3115-3126.
30. Nikolov, D.B., Chen, H., Halay, E.D., Usheva, A.A., Hisatake, K., Lee, D.K., Roeder, R.G., and Burley, S.K. (1995). Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377, 119-128.
31. Papazian, D.M., Schwarz, T.L., Tempel, B.L., Jan, Y.N., and Jan, L.Y. (1987). Cloning of genomic and complementary DNA from Shaker, a putative potassium channel gene from Drosophila. Science 237, 749-753.
32. Papazian, D.M., Schwarz, T.L., Tempel, B.L., Timpe, L.C., and Jan, L.Y. (1988). Ion channels in Drosophila. Annu. Rev. Physiol. 50, 379-394.
33. Parker, C., and Topol, J. (1984). A Drosophila polymerase II transcription factor contains a promoter-region-specific DNA-binding activity. Cell 36, 357-369.
34. Pascal, E. (1992). Synergism and other activation properties of the mammalian transcription factor Sp1. Ph.D. thesis, University of California at Berkeley, Berkeley, CA.
35. Roeder, R. (1996). The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21, 327-335.
36. + channels conserved in flies, mice and humans. Trends Neurosci. 15, 161-166.
37. Sauer, F., Wassarman, D., Rubin, G., and Tjian, R. (1996). TAFIIs mediate activation of transcription in the Drosophila embryo. Cell 87, 1271-1284.
38. Shopland, L.S., and Lis, J.T. (1996). HSF recruitment and loss at most Drosophila heat shock loci is coordinated and depends on proximal promoter sequences. Chromosoma 105, 158-171.
39. Strubin, M., and Struhl, K. (1992). Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell 68, 721-730.
40. Suzuki, Y.Y., Guermah, M., and Roeder, R.G. (1997). The ts13 mutation in the TAF(II)250 subunit (CCG1) of TFIID directly affects transcription of D-type cyclin genes in cells arrested in G1 at the nonpermissive temperature. Mol. Cell. Biol. 17, 3284-3294.
41. Tang, H., Sun, X., Reinberg, D., and Ebright, R.H. (1996). Protein-protein interactions in eukaryotic transcription intiation: structure of the preinitiation complex. Proc. Natl. Acad. Sci. USA 93, 1119-1124.
42. Tautz, D., and Pfeifle, C. (1989). A nonradioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals a translational control of the segmentation gene hunchback. Chromosoma 98, 81-85.
43. Tjian, R., and Maniatis, T. (1994). Transcriptional activation: a complex puzzle with few easy pieces. Cell 77, 5-8.
44. Usheva, A., and Shenk, T. (1994). TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA. Cell 76, 1115-1121.
45. Verrijzer, P., Chen, J.L., Yokomori, K., and Tjian, R. (1995). Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II. Cell 81, 1115-1125.
46. II250. Science 263, 811-814.
47. Wang, X., Hansen, S.K., Ratts, R., Zhou, S., Snook, A.J., and Zehring, W. (1997). Drosophila TFIIE: purification, cloning, and functional reconstitution. Proc. Natl. Acad. Sci. USA 94, 433-438.
48. Weinzierl, R.O.J., Dynlacht, B.D., and Tjian, R. (1993). Largest subunit of Drosophila transcription IID directs assembly of a complex containing TBP and a coactivator. Nature 362, 511-517.
49. Yokomori, K., Zeidler, M.P., Chen, J.L., Verrijzer, C.P., Mlodzik, M., and Tjian, R. (1994). Drosophila TFIIA directs cooperative DNA binding with TBP and mediates transcriptional activation. Genes Dev. 8, 2313-2323.
50. Zawel, L., and Reinberg, D. (1995). Common themes in assembly and function of eukaryotic transcription complexes. Annu. Rev. Biochem. 64, 533-561.