Structural homology between the Rap30 DNA-binding domain and linker histone H5: Implications for preinitiation complex assembly

Proceedings of the National Academy of Sciences of the United States of America

Volumn 95, Issue 16, 1998, Pages 9117-9122

  Groft, Caroline M ^a   Uljon, Sacha N ^a   Wang, Rong ^a   Werner, Milton H ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; DNA BINDING PROTEIN; GLOBULAR PROTEIN; HELIX LOOP HELIX PROTEIN; HISTONE H5; INITIATION FACTOR; SIGMA FACTOR; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR;

ARTICLE; CHROMATIN; DNA PROTEIN COMPLEX; ESCHERICHIA COLI; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; SEQUENCE HOMOLOGY; TATA BOX; TRANSCRIPTION INITIATION;

BASE SEQUENCE; DNA, VIRAL; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; HELIX-TURN-HELIX MOTIFS; HISTONES; MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN CONFORMATION; SIGMA FACTOR; TRANSCRIPTION FACTORS; TRANSCRIPTION FACTORS, TFII;

ESCHERICHIA COLI; EUKARYOTA; PROKARYOTA;

EID: 0032482927     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.95.16.9117     Document Type: Article

References (50)

1. Roeder, R. G. (1996) Trends Biochem. Sci. 21, 327-335.
2. Zawel, L. & Reinberg, D. (1995) Annu. Rev. Biochem. 64, 533-561.
3. Reines, D., Conaway, J. W. & Conaway, R. C. (1996) Trends Biochem. Sci. 21, 351-355.
4. Zawel, L. & Reinberg, D. (1993) Prog. Nucleic Acids Res. Mol. Biol. 44, 67-108.
5. Tan, S., Aso, T., Conaway, R. C. & Conaway, J. W. (1994) J. Biol. Chem. 269, 25684-25691.
6. Sun, F.-W. & Hempsey, M. (1995) Proc. Natl. Acad. Sci. USA 92, 3127-3131.
7. Fang, S. M. & Burton, Z. F. (1996) J. Biol. Chem. 271, 11703-11709.
8. Gross, C. A., Lonetto, M. & Losick, R. (1994) in Transcriptional Regulation, eds. McKnight, S. L. & Yamamoto, K. R. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 129-176.
9. Tan, S., Garrett, K. P., Conaway, R. C. & Conaway, J. W. (1994) Proc. Natl. Acad. Sci. USA 91, 9808-9812.
10. Tan, S., Conaway, R. C. & Conaway, J. W. (1995) Proc. Natl. Acad. Sci. USA 92, 6042-6046.
11. Gardella, T., Moyle, T. & Susskind, M. M. (1989) J. Mol. Biol. 206, 579-590.
12. Siegele, D. A., Hu, J. C., Walter, W. A. & Gross, C. A. (1989) J. Mol. Biol. 206, 591-603.
13. McCracken, S. & Greenblatt, J. (1991) Science 253, 900-902.
14. Ramakrishnan, V., Finch, J. T., Graziano, V., Lee, P. L. & Sweet, R. M. (1993) Nature (London) 362, 219-223.
15. Clark, K. L., Halay, E. D., Lai, E. & Burley, S. K. (1993) Nature (London) 364, 412-420.
16. Bax, A. & Grzesiek, S. (1993) Acc. Chem. Res. 26, 131-138.
17. Clore, G. M. & Gronenborn, A. M. (1991) Science 252, 1390-1399.
18. Clore, G. M. & Gronenborn, A. M. (1994) Protein Sci. 3, 372-390.
19. Bax, A., Vuister, G. W., Grzesiek, S., Delaglio, F., Wang, A. C., Tschudin, R. & Zhu, G. (1994) Methods Enzymol. 239, 79-106.
20. Werner, M. H., Bianchi, M. E., Gronenborn, A. M. & Clore, G. M. (1995) Biochemistry 34, 11998-12004.
21. Nilges, M. A. (1993) Proteins Struct. Funct. Genet. 17, 297-309.
22. Nilges, M. A., Clore, G. M. & Gronenborn, A. M. (1990) Biopolymers 29, 813-822.
23. Nilges, M. A., Clore, G. M. & Gronenborn, A. M. (1988) FEBS Lett. 229, 317-324.
24. Brünger, A. T. (1993) X-PLOR Version 3.1: A System for X-ray Crystallography and NMR (Yale Univ. Press, New Haven, CT).
25. Garrett, D. S., Kuszewski, J., Hancock, T. J., Lodi, P. J., Vuister, G. W., Gronenborn, A. M. & Clore, G. M. (1994) J. Magn. Reson. Ser. B 104, 99-103.
26. Kuszewski, J., Qin, J., Gronenborn, A. M. & Clore, G. M. (1995) J. Magn. Reson. Ser. B 106, 92-96.
27. Kuszewski, J., Gronenborn, A. M., Clore, G. M. (1997) J. Magn. Reson. 125, 171-177.
28. Wilson, K. P., Shewchuk, L. M., Brenan. R. G., Otsuka, A. J. & Matthews, B. W. (1992) Proc. Natl. Acad. Sci. USA 89, 9257-9261.
29. Fogh, R. H., Ottleben, G., Ruterjans, H., Schnarr, M., Boelens, R. & Kaptein, R. (1994) EMBO J. 13, 3936-3944.
30. Pabo, C. O. & Sauer, R. T. (1992) Annu. Rev. Biochem. 61, 1053-1095.
31. Ogata, K., Hojo, H., Aimoto, S., Nakai, T., Nakamura, H., Sarai, A., Ishii, S. & Nishimura, Y. (1992) Proc. Natl. Acad. Sci. USA 89, 6428-6432.
32. Kodandapani, R., Pio, F., Ni, C. Z., Piccialli, G., Klemsz, M., McKercher, S., Maki, R. A. & Ely, K. R. (1996) Nature (London) 380, 456-460.
33. Werner, M. H., Clore, G. M., Fisher, C. L., Fisher, R. J., Trinh, L., Shiloach, J. & Gronenborn, A. M. (1997) J. Biomol. NMR 10, 317-328.
34. Batchelor, A., Piper, D. E., dela Brousse, F. C., McKnight, S. L. & Wolberger, C. (1998) Science 279, 1037-1041.
35. Assa-Munt, N., Mortishire-Smith, R. J., Aurora, R., Herr, W. & Wright, P. E. (1993) Cell 73, 193-205.
36. Robert, F., Forget, D., Li, J., Greenblatt, J. & Coulombe, B. (1996) J. Biol. Chem. 271, 8517-8520.
37. Wang, B. Q., Kostrub, C. F., Finkelstein, A. & Burton, Z. F. (1993) Protein Expression Purif. 4, 207-214.
38. Felsenfeld, G., Boyes, J., Chung, J., Clark, D. & Studitsky, V. (1996) Proc. Natl. Acad. Sci. USA 93, 9384-9388.
39. Xie, X., Kokubo, T., Cohen, S. L., Hoffmann, A., Chait, B. T., Roeder, R. G., Nakatani, Y. & Burley, S. K. (1996) Nature (London) 380, 316-322.
40. Goytisolo, F. A., Gerchman, S. E., Yu, X., Rees, C., Graziano, V., Ramakrishnan, V. & Thomas, J. O. (1996) EMBO J. 15, 3421-3429.
41. Hayes, J. J., Kaplan, R., Ura, K., Pruss, D. & Wolffe, A. (1996) J. Biol. Chem. 271, 25817-25822.
42. Cirillo, L. A., McPherson, C. E., Bossard, P., Stevens, K., Cherian, S., Shim, E. Y., Clark, K. L., Burley, S. K. & Zaret, K. S. (1998) EMBO J. 17, 244-254.
43. Pruss, D., Bartholomew, B., Persinger, J., Hayes, J., Arents, G., Moudrianakis, E. N. & Wolffe, A. P. (1996) Science 274, 614-617.
44. Forget, D., Robet, F., Grondin, G., Burton, Z. F., Greenblatt, J. & Coulombe, B. (1997) Proc. Natl. Acad. Sci. USA 94, 7150-7155.
45. Kim, T.-Y., Lagrane, T., Wang, Y.-H., Griffith, J. D., Reinberg, D. & Ebright, R. H. (1997) Proc. Natl. Acad. Sci. USA 94, 12268-12273.
46. Flores, O., Ha, I. & Reinberg, D. (1990) J. Biol. Chem. 265, 5629-5634.
47. Buratowski, S., Sopta, M., Greenblatt, J. & Sharp, P. A. (1991) Proc. Natl. Acad. Sci. USA 88, 7509-7513.
48. Sopta, M., Burton, A. F. & Greenblatt, J. (1989) Nature (London) 341, 410-414.
49. Garrett, K. P., Serizawa, H., Hanley, J. P., Bradsher, J. N., Tsuboi, A., Arai, N., Yokota, T., Arai, K.-I., Conaway, R. C. & Conaway, J. W. (1992) J. Biol. Chem. 25, 23942-23949.
50. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.