메뉴 건너뛰기




Volumn 1, Issue 1, 2012, Pages 40-51

Perspectives on the RNA polymerase II core promoter

Author keywords

[No Author keywords available]

Indexed keywords

CAUDAL PROTEIN; CELL PROTEIN; CYCLIN DEPENDENT KINASE INHIBITOR 1A; NUCLEOTIDE; PROTEIN P53; RIBOSOME PROTEIN; RNA POLYMERASE II; UNCLASSIFIED DRUG;

EID: 84858444088     PISSN: 17597684     EISSN: 17597692     Source Type: Journal    
DOI: 10.1002/wdev.21     Document Type: Review
Times cited : (183)

References (67)
  • 1
    • 0043269205 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter.
    • Smale ST, Kadonaga JT. The RNA polymerase II core promoter. Annu Rev Biochem 2003, 72:449-479.
    • (2003) Annu Rev Biochem , vol.72 , pp. 449-479
    • Smale, S.T.1    Kadonaga, J.T.2
  • 2
    • 77149174487 scopus 로고    scopus 로고
    • Regulation of gene expression via the core promoter and the basal transcriptional machinery.
    • Juven-Gershon T, Kadonaga JT. Regulation of gene expression via the core promoter and the basal transcriptional machinery. Dev Biol 2010, 339:225-229.
    • (2010) Dev Biol , vol.339 , pp. 225-229
    • Juven-Gershon, T.1    Kadonaga, J.T.2
  • 3
    • 73649105501 scopus 로고    scopus 로고
    • Promoting developmental transcription.
    • Ohler U, Wassarman DA. Promoting developmental transcription. Development 2010, 137:15-26.
    • (2010) Development , vol.137 , pp. 15-26
    • Ohler, U.1    Wassarman, D.A.2
  • 5
    • 33747881750 scopus 로고    scopus 로고
    • The general transcription machinery and general cofactors.
    • Thomas MC, Chiang CM. The general transcription machinery and general cofactors. Crit Rev Biochem Mol Biol 2006, 41:105-178.
    • (2006) Crit Rev Biochem Mol Biol , vol.41 , pp. 105-178
    • Thomas, M.C.1    Chiang, C.M.2
  • 6
    • 84886270655 scopus 로고
    • Sequence analysis of drosophila histone genes, Ph.D. Dissertation. Stanford University
    • Goldberg ML. Sequence analysis of drosophila histone genes, Ph.D. Dissertation. Stanford University, 1979.
    • (1979)
    • Goldberg, M.L.1
  • 7
    • 33846214719 scopus 로고    scopus 로고
    • Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters.
    • Yang C, Bolotin E, Jiang T, Sladek FM, Martinez E. Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters. Gene 2007, 389:52-65.
    • (2007) Gene , vol.389 , pp. 52-65
    • Yang, C.1    Bolotin, E.2    Jiang, T.3    Sladek, F.M.4    Martinez, E.5
  • 9
    • 0024557039 scopus 로고
    • The initiator as a transcription control element.
    • Smale ST, Baltimore D. The initiator as a transcription control element. Cell 1989, 57:103-113.
    • (1989) Cell , vol.57 , pp. 103-113
    • Smale, S.T.1    Baltimore, D.2
  • 10
    • 0028201744 scopus 로고
    • TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes.
    • Purnell BA, Emanuel PA, Gilmour DS. TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes. Genes Dev 1994, 8:830-842.
    • (1994) Genes Dev , vol.8 , pp. 830-842
    • Purnell, B.A.1    Emanuel, P.A.2    Gilmour, D.S.3
  • 11
    • 0033200098 scopus 로고    scopus 로고
    • DNA binding site selection by RNA polymerase II TAFs: a TAF(II)250-TAF(II)150 complex recognizes the initiator.
    • Chalkley GE, Verrijzer CP. DNA binding site selection by RNA polymerase II TAFs: a TAF(II)250-TAF(II)150 complex recognizes the initiator. EMBO J 1999, 18:4835-4845.
    • (1999) EMBO J , vol.18 , pp. 4835-4845
    • Chalkley, G.E.1    Verrijzer, C.P.2
  • 12
    • 0028153702 scopus 로고
    • DNA sequence requirements for transcriptional initiator activity in mammalian cells.
    • Javahery R, Khachi A, Lo K, Zenzie-Gregory B, Smale ST. DNA sequence requirements for transcriptional initiator activity in mammalian cells. Mol Cell Biol 1994, 14:116-127.
    • (1994) Mol Cell Biol , vol.14 , pp. 116-127
    • Javahery, R.1    Khachi, A.2    Lo, K.3    Zenzie-Gregory, B.4    Smale, S.T.5
  • 13
    • 0012253746 scopus 로고    scopus 로고
    • Computational analysis of core promoters in the Drosophila genome.
    • RESEARCH0087
    • Ohler U, Liao GC, Niemann H, Rubin GM. Computational analysis of core promoters in the Drosophila genome. Genome Biol 2002, 3:RESEARCH0087.
    • (2002) Genome Biol , vol.3
    • Ohler, U.1    Liao, G.C.2    Niemann, H.3    Rubin, G.M.4
  • 15
  • 18
    • 0038575389 scopus 로고    scopus 로고
    • Archaeal chromatin and transcription.
    • Reeve JN. Archaeal chromatin and transcription. Mol Microbiol 2003, 48:587-598.
    • (2003) Mol Microbiol , vol.48 , pp. 587-598
    • Reeve, J.N.1
  • 19
    • 0031882652 scopus 로고    scopus 로고
    • New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.
    • Lagrange T, Kapanidis AN, Tang H, Reinberg D, Ebright RH. New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB. Genes Dev 1998, 12:34-44.
    • (1998) Genes Dev , vol.12 , pp. 34-44
    • Lagrange, T.1    Kapanidis, A.N.2    Tang, H.3    Reinberg, D.4    Ebright, R.H.5
  • 20
    • 0035890331 scopus 로고    scopus 로고
    • Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB.
    • Evans R, Fairley JA, Roberts SG. Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB. Genes Dev 2001, 15:2945-2949.
    • (2001) Genes Dev , vol.15 , pp. 2945-2949
    • Evans, R.1    Fairley, J.A.2    Roberts, S.G.3
  • 21
    • 26944492656 scopus 로고    scopus 로고
    • A core promoter element downstream of the TATA box that is recognized by TFIIB.
    • Deng W, Roberts SG. A core promoter element downstream of the TATA box that is recognized by TFIIB. Genes Dev 2005, 19:2418-2423.
    • (2005) Genes Dev , vol.19 , pp. 2418-2423
    • Deng, W.1    Roberts, S.G.2
  • 22
    • 54349103510 scopus 로고    scopus 로고
    • Caudal, a key developmental regulator, is a DPE-specific transcriptional factor.
    • Juven-Gershon T, Hsu JY, Kadonaga JT. Caudal, a key developmental regulator, is a DPE-specific transcriptional factor. Genes Dev 2008, 22:2823-2830.
    • (2008) Genes Dev , vol.22 , pp. 2823-2830
    • Juven-Gershon, T.1    Hsu, J.Y.2    Kadonaga, J.T.3
  • 23
    • 0029971668 scopus 로고    scopus 로고
    • Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters.
    • Burke TW, Kadonaga JT. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes Dev 1996, 10:711-724.
    • (1996) Genes Dev , vol.10 , pp. 711-724
    • Burke, T.W.1    Kadonaga, J.T.2
  • 24
    • 3042784063 scopus 로고    scopus 로고
    • The MTE, a new core promoter element for transcription by RNA polymerase II.
    • Lim CY, Santoso B, Boulay T, Dong E, Ohler U, Kadonaga JT. The MTE, a new core promoter element for transcription by RNA polymerase II. Genes Dev 2004, 18:1606-1617.
    • (2004) Genes Dev , vol.18 , pp. 1606-1617
    • Lim, C.Y.1    Santoso, B.2    Boulay, T.3    Dong, E.4    Ohler, U.5    Kadonaga, J.T.6
  • 25
    • 0030669466 scopus 로고    scopus 로고
    • The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila.
    • Burke TW, Kadonaga JT. The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila. Genes Dev 1997, 11:3020-3031.
    • (1997) Genes Dev , vol.11 , pp. 3020-3031
    • Burke, T.W.1    Kadonaga, J.T.2
  • 27
    • 77954355150 scopus 로고    scopus 로고
    • Three key subregions contribute to the function of the downstream RNA polymerase II core promoter.
    • Theisen JW, Lim CY, Kadonaga JT. Three key subregions contribute to the function of the downstream RNA polymerase II core promoter. Mol Cell Biol 2010, 30:3471-3479.
    • (2010) Mol Cell Biol , vol.30 , pp. 3471-3479
    • Theisen, J.W.1    Lim, C.Y.2    Kadonaga, J.T.3
  • 29
    • 52949138674 scopus 로고    scopus 로고
    • On the nature of human housekeeping genes.
    • Zhu J, He F, Hu S, Yu J. On the nature of human housekeeping genes. Trends Genet 2008, 24:481-484.
    • (2008) Trends Genet , vol.24 , pp. 481-484
    • Zhu, J.1    He, F.2    Hu, S.3    Yu, J.4
  • 30
    • 79956330964 scopus 로고    scopus 로고
    • CpG islands and the regulation of transcription.
    • Deaton AM, Bird A. CpG islands and the regulation of transcription. Genes Dev 2011, 25:1010-1022.
    • (2011) Genes Dev , vol.25 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2
  • 31
    • 79851485916 scopus 로고    scopus 로고
    • Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level.
    • Rach EA, Winter DR, Benjamin AM, Corcoran DL, Ni T, Zhu J, Ohler U. Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level. PLoS Genet 2011, 7:e1001274.
    • (2011) PLoS Genet , vol.7
    • Rach, E.A.1    Winter, D.R.2    Benjamin, A.M.3    Corcoran, D.L.4    Ni, T.5    Zhu, J.6    Ohler, U.7
  • 33
    • 0025312046 scopus 로고
    • Assembly and disassembly of the Drosophila RNA polymerase II complex during transcription.
    • Kadonaga JT. Assembly and disassembly of the Drosophila RNA polymerase II complex during transcription. J Biol Chem 1990, 265:2624-2631.
    • (1990) J Biol Chem , vol.265 , pp. 2624-2631
    • Kadonaga, J.T.1
  • 34
    • 0026092947 scopus 로고
    • Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos.
    • Kamakaka RT, Tyree CM, Kadonaga JT. Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos. Proc Natl Acad Sci USA 1991, 88:1024-1028.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 1024-1028
    • Kamakaka, R.T.1    Tyree, C.M.2    Kadonaga, J.T.3
  • 35
    • 0021325759 scopus 로고
    • Dinucleotide priming of transcription mediated by RNA polymerase II.
    • Samuels M, Fire A, Sharp PA. Dinucleotide priming of transcription mediated by RNA polymerase II. J Biol Chem 1984, 259:2517-2525.
    • (1984) J Biol Chem , vol.259 , pp. 2517-2525
    • Samuels, M.1    Fire, A.2    Sharp, P.A.3
  • 36
    • 0026806431 scopus 로고
    • Similar mechanisms for transcription initiation mediated through a TATA box or an initiator element.
    • Zenzie-Gregory B, O'Shea-Greenfield A, Smale ST. Similar mechanisms for transcription initiation mediated through a TATA box or an initiator element. J Biol Chem 1992, 267:2823-2830.
    • (1992) J Biol Chem , vol.267 , pp. 2823-2830
    • Zenzie-Gregory, B.1    O'Shea-Greenfield, A.2    Smale, S.T.3
  • 37
    • 0842265974 scopus 로고    scopus 로고
    • Regulation of RNA polymerase II transcription by sequence-specific DNA-binding factors.
    • Kadonaga JT. Regulation of RNA polymerase II transcription by sequence-specific DNA-binding factors. Cell 2004, 116:247-257.
    • (2004) Cell , vol.116 , pp. 247-257
    • Kadonaga, J.T.1
  • 38
    • 0025339163 scopus 로고
    • Transcriptional activation by Sp1 as directed through TATA or initiator: specific requirement for mammalian transcription factor IID.
    • Smale ST, Schmidt MC, Berk AJ, Baltimore D. Transcriptional activation by Sp1 as directed through TATA or initiator: specific requirement for mammalian transcription factor IID. Proc Natl Acad Sci USA 1990, 87:4509-4513.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4509-4513
    • Smale, S.T.1    Schmidt, M.C.2    Berk, A.J.3    Baltimore, D.4
  • 39
    • 0032004344 scopus 로고    scopus 로고
    • Sp1 activation of a TATA-less promoter requires a species-specific interaction involving transcription factor IID.
    • Emami KH, Burke TW, Smale ST. Sp1 activation of a TATA-less promoter requires a species-specific interaction involving transcription factor IID. Nucleic Acids Res 1998, 26:839-846.
    • (1998) Nucleic Acids Res , vol.26 , pp. 839-846
    • Emami, K.H.1    Burke, T.W.2    Smale, S.T.3
  • 41
    • 0025122109 scopus 로고
    • Functional dissection of a mouse ribosomal protein promoter: significance of the polypyrimidine initiator and an element in the TATA-box region.
    • Hariharan N, Perry RP. Functional dissection of a mouse ribosomal protein promoter: significance of the polypyrimidine initiator and an element in the TATA-box region. Proc Natl Acad Sci USA 1990, 87:1526-1530.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 1526-1530
    • Hariharan, N.1    Perry, R.P.2
  • 42
    • 0025908281 scopus 로고
    • Cell-free transcription of a mouse ribosomal-protein-encoding gene: the effects of promoter mutations.
    • Chung S, Perry RP. Cell-free transcription of a mouse ribosomal-protein-encoding gene: the effects of promoter mutations. Gene 1991, 100:173-180.
    • (1991) Gene , vol.100 , pp. 173-180
    • Chung, S.1    Perry, R.P.2
  • 44
    • 0034602192 scopus 로고    scopus 로고
    • A basal transcription factor that activates or represses transcription.
    • Willy PJ, Kobayashi R, Kadonaga JT. A basal transcription factor that activates or represses transcription. Science 2000, 290:982-985.
    • (2000) Science , vol.290 , pp. 982-985
    • Willy, P.J.1    Kobayashi, R.2    Kadonaga, J.T.3
  • 45
    • 51149085210 scopus 로고    scopus 로고
    • TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription.
    • Hsu JY, Juven-Gershon T, Marr MT 2nd, Wright KJ, Tjian R, Kadonaga JT. TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription. Genes Dev 2008, 22:2353-2358.
    • (2008) Genes Dev , vol.22 , pp. 2353-2358
    • Hsu, J.Y.1    Juven-Gershon, T.2    Marr, M.T.3    Wright, K.J.4    Tjian, R.5    Kadonaga, J.T.6
  • 46
    • 0032519586 scopus 로고    scopus 로고
    • Different core promoters possess distinct regulatory activities in the Drosophila embryo.
    • Ohtsuki S, Levine M, Cai HN. Different core promoters possess distinct regulatory activities in the Drosophila embryo. Genes Dev 1998, 12:547-556.
    • (1998) Genes Dev , vol.12 , pp. 547-556
    • Ohtsuki, S.1    Levine, M.2    Cai, H.N.3
  • 47
    • 0035477093 scopus 로고    scopus 로고
    • Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs.
    • Butler JE, Kadonaga JT. Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. Genes Dev 2001, 15:2515-2519.
    • (2001) Genes Dev , vol.15 , pp. 2515-2519
    • Butler, J.E.1    Kadonaga, J.T.2
  • 48
    • 75149175733 scopus 로고    scopus 로고
    • Regulation of the p53 transcriptional response by structurally diverse core promoters.
    • Morachis JM, Murawsky CM, Emerson BM. Regulation of the p53 transcriptional response by structurally diverse core promoters. Genes Dev 2010, 24:135-147.
    • (2010) Genes Dev , vol.24 , pp. 135-147
    • Morachis, J.M.1    Murawsky, C.M.2    Emerson, B.M.3
  • 49
    • 0024282827 scopus 로고
    • The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.
    • Rougvie AE, Lis JT. The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 1988, 54:795-804.
    • (1988) Cell , vol.54 , pp. 795-804
    • Rougvie, A.E.1    Lis, J.T.2
  • 50
    • 0025166038 scopus 로고
    • Postinitiation transcriptional control in Drosophila melanogaster.
    • Rougvie AE, Lis JT. Postinitiation transcriptional control in Drosophila melanogaster. Mol Cell Biol 1990, 10:6041-6045.
    • (1990) Mol Cell Biol , vol.10 , pp. 6041-6045
    • Rougvie, A.E.1    Lis, J.T.2
  • 51
    • 70249104647 scopus 로고    scopus 로고
    • Defining mechanisms that regulate RNA polymerase II transcription in vivo.
    • Fuda NJ, Ardehali MB, Lis JT. Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature 2009, 461:186-192.
    • (2009) Nature , vol.461 , pp. 186-192
    • Fuda, N.J.1    Ardehali, M.B.2    Lis, J.T.3
  • 52
    • 79955795581 scopus 로고    scopus 로고
    • Paused RNA polymerase II as a developmental checkpoint.
    • Levine M. Paused RNA polymerase II as a developmental checkpoint. Cell 2011, 145:502-511.
    • (2011) Cell , vol.145 , pp. 502-511
    • Levine, M.1
  • 53
    • 79953164741 scopus 로고    scopus 로고
    • Promoter proximal pausing and the control of gene expression.
    • Li J, Gilmour DS. Promoter proximal pausing and the control of gene expression. Curr Opin Genet Dev 2011, 21:231-235.
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 231-235
    • Li, J.1    Gilmour, D.S.2
  • 55
    • 78149477660 scopus 로고    scopus 로고
    • Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation.
    • Gilchrist DA, Dos Santos G, Fargo DC, Xie B, Gao Y, Li L, Adelman K. Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell 2010, 143:540-551.
    • (2010) Cell , vol.143 , pp. 540-551
    • Gilchrist, D.A.1    Dos Santos, G.2    Fargo, D.C.3    Xie, B.4    Gao, Y.5    Li, L.6    Adelman, K.7
  • 60
    • 72149130298 scopus 로고    scopus 로고
    • Shifting players and paradigms in cell-specific transcription.
    • D'Alessio JA, Wright KJ, Tjian R. Shifting players and paradigms in cell-specific transcription. Mol Cell 2009, 36:924-931.
    • (2009) Mol Cell , vol.36 , pp. 924-931
    • D'Alessio, J.A.1    Wright, K.J.2    Tjian, R.3
  • 61
    • 77954763022 scopus 로고    scopus 로고
    • Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation.
    • Goodrich JA, Tjian R. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nat Rev Genet 2010, 11:549-558.
    • (2010) Nat Rev Genet , vol.11 , pp. 549-558
    • Goodrich, J.A.1    Tjian, R.2
  • 62
    • 34548427818 scopus 로고    scopus 로고
    • Switching of the core transcription machinery during myogenesis.
    • Deato MD, Tjian R. Switching of the core transcription machinery during myogenesis. Genes Dev 2007, 21:2137-2149.
    • (2007) Genes Dev , vol.21 , pp. 2137-2149
    • Deato, M.D.1    Tjian, R.2
  • 63
  • 64
    • 79952771295 scopus 로고    scopus 로고
    • Core promoter recognition complex changes accompany liver development.
    • D'Alessio JA, Ng R, Willenbring H, Tjian R. Core promoter recognition complex changes accompany liver development. Proc Natl Acad Sci USA 2011, 108:3906-3911.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 3906-3911
    • D'Alessio, J.A.1    Ng, R.2    Willenbring, H.3    Tjian, R.4
  • 65
    • 33750345805 scopus 로고    scopus 로고
    • Rational design of a super core promoter that enhances gene expression.
    • Juven-Gershon T, Cheng S, Kadonaga JT. Rational design of a super core promoter that enhances gene expression. Nat Methods 2006, 3:917-922.
    • (2006) Nat Methods , vol.3 , pp. 917-922
    • Juven-Gershon, T.1    Cheng, S.2    Kadonaga, J.T.3
  • 67
    • 69249215400 scopus 로고    scopus 로고
    • Divergent transcription: a new feature of active promoters.
    • Seila AC, Core LJ, Lis JT, Sharp PA. Divergent transcription: a new feature of active promoters. Cell Cycle 2009, 8:2557-2564.
    • (2009) Cell Cycle , vol.8 , pp. 2557-2564
    • Seila, A.C.1    Core, L.J.2    Lis, J.T.3    Sharp, P.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.