Mechanism of promoter melting by the xeroderma pigmentosum complementation group B helicase of transcription factor IIH revealed by protein-DNA photo-cross-linking

Molecular and Cellular Biology

Volumn 20, Issue 21, 2000, Pages 8168-8177

  Douziech, M ^a   Coin, F ^a   Chipoulet, J M ^a   Arai, Y ^a   Ohkuma, Y ^a   Egly, J M ^a   Coulombe, B ^a  

^a UNIVERSITÉ DE SHERBROOKE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; HELICASE; RNA POLYMERASE II; TRANSCRIPTION FACTOR;

ARTICLE; CROSS LINKING; HUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; TRANSCRIPTION INITIATION; XERODERMA PIGMENTOSUM;

ADENOSINE TRIPHOSPHATE; BASE SEQUENCE; BLOTTING, WESTERN; CROSS-LINKING REAGENTS; DNA; GENE DELETION; HELA CELLS; HUMAN; HYDROLYSIS; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PRECIPITIN TESTS; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; PROTEINS; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID; SUPPORT, NON-U.S. GOV'T; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; XERODERMA PIGMENTOSUM;

EID: 0033781448     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.20.21.8168-8177.2000     Document Type: Article

References (72)

1. Solution structure of the C-terminal core domain of human TFIIB: Similarity to cyclin A and interaction with TATA-binding protein
2. Mutations in XPB and XPD helicases found in xeroderma pigmentosum patients impair the transcription function of TFIIH
3. A multisubunit transcription factor essential for accurate initiation by RNA polymerase II
4. Mechanism of promoter selection by RNA polymerase II: Mammalian transcription factors alpha and beta gamma promote entry of polymerase into the preinitiation complex
5. DNA bending and wrapping around RNA polymerase: A revolutionary model describing transcriptional mechanisms
6. Topological localization of the human transcription factors IIA, IIB, TATA box-binding protein, and RNA polymerase II-associated protein 30 on a class II promoter
7. Architecture of RNA polymerase II and implications for the transcription mechanism
8. Reversible phosphorylation of the C-terminal domain of RNA polymerase II
9. Three-dimensional structure of yeast RNA polymerase II at 16 A resolution
10. Topological localization of the carboxyl-terminal domain of RNA polymerase II in the initiation complex
11. Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II
12. Mechanism of open complex and dual incision formation by human excision repair factors
13. CTD kinase associated with yeast RNA polymerase II initiation factor b
14. A novel cyclin associates with MO15/CDK7 to form the CDK-activating kinase
15. Factors involved in specific transcription by mammalian RNA polymerase II. Purification and subunit composition of transcription factor IIF
16. The small subunit of transcription factor IIF recruits RNA polymerase II into the pre-initiation complex
17. RAP74 induces promoter contact by RNA polymerase II upstream and downstream of a DNA bend centered on the TATA box
18. Purification and interaction properties of the human RNA polymerase B (II) general transcription factor BTF2
19. Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II
20. Structural homology between the RAP30 DNA-binding domain and linker histone H5: Implications for preinitiation complex assembly
21. Molecular genetics of the RNA polymerase II general transcriptional machinery
22. Three transitions in the RNA polymerase II transcription complex during initiation
23. The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA
24. Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH
25. Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of general transcription factor IIE
26. Defective transcriptional activation by diverse VP16 mutants associated with a common inability to form open promoter complexes
27. Co-crystal structure of TBP recognizing the minor groove of a TATA element
28. Trajectory of DNA in the RNA polymerase II transcription preinitiation complex
29. Mechanism of ATP-dependent promoter melting by transcription factor TFIIH
30. Crystal structure of a yeast TBP/TATA-box complex
31. High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA photocrosslinking: Organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex
32. The RAP74 subunit of transcription factor IIF has a similar role in isomerization of the initiation and the elongation complexes
33. Functions of the N- and C-terminal domains of human RAP74 in transcriptional initiation, elongation, and recycling of RNA polymerase II
34. Mechanisms of helicase-catalyzed DNA unwinding
35. Human general transcription factor IIH phosphorylates the C-terminal domain of RNA polymerase II
36. A role for the TFIIH XPB DNA helicase in promoter escape by RNA polymerase II
37. Crystal structure of a TFIIB-TBP-TATA-element ternary complex
38. Topology and reorganization of a human TFIID-promoter complex
39. Analysis of the role of TFIIE in basal transcription and TFIIH-mediated carboxy-terminal domain phosphorylation through structure-function studies of TFIIEα
40. Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formation
41. Factors involved in specific transcription by mammalian RNA polymerase II: Purification and characterization of general transcription factor TFIIE
42. Analysis of the role of TFIIE in transcriptional regulation through structure-function studies of the TFIIEβ subunit
43. Structure of the central core domain of TFIIEβ with a novel double-stranded DNA-binding surface
44. The general initiation factors of RNA polymerase II
45. Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site
46. DNA topology and a minimal set of basal factors for transcription by RNA polymerase II
47. Electron crystal structure of an RNA polymerase II transcription elongation complex
48. Wrapping of DNA around the E. coli RNA polymerase open promoter complex
49. The use of site-specific protein-DNA photo-crosslinking to analyze the molecular organization of the RNA polymerase II initiation complex
50. Localization of subunits of transcription factors IIE and IIF immediately upstream of the transcriptional initiation site of the adenovirus major late promoter
51. Wrapping of promoter DNA around the RNA polymerase II initiation complex induced by TFIIF
52. The MO15 cell cycle kinase is associated with the TFIIH transcription-DNA repair factor
53. The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription repair factor
54. DNA repair helicase: A component of BTF2 (TFIIH) basic transcription factor
55. Molecular structure of human TFIIH
56. A carboxyl-terminal-domain kinase associated with RNA polymerase II transcription factor delta from rat liver
57. Multifunctional RNA polymerase II initiation factor delta from rat liver. Relationship between carboxyl-terminal domain kinase, ATPase, and helicase activities
58. Association of Cdk-activating kinase subunits with transcription factor TFIIH
59. Cdk-activating kinase complex is a component of human transcription factor TFIIH
60. The multiple roles of transcription/repair factor TFIIH
61. A heteroduplex template circumvents the energetic requirement for ATP during activated transcription by RNA polymerase II
62. Transcription initiation by RNA polymerase II does not require hydrolysis of the β-γ phosphoanhydride bond of ATP
63. Reconstitution of the transcription factor TFIIH: Assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7
64. Identification of a minimal set of proteins that is sufficient for accurate initiation of transcription by RNA polymerase II
65. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
66. Functional domains of human RAP74 including a masked polymerase binding domain
67. The yeast TFB1 and SSL1 genes, which encode subunits of transcription factor IIH, are required for nucleotide excision repair and RNA polymerase II transcription
68. A presumed DNA helicase encoded by ERCC-3 is involved in the human repair disorders xeroderma pigmentosum and Cockayne's syndrome
69. Multiple ATP-dependent steps in RNA polymerase II promoter melting and initiation
70. An interplay between TATA box-binding protein and transcription factors IIE and IIA modulates DNA binding and transcription
71. RNA polymerase II
72. Crystal structure of Thermus aquaticus core RNA polymerase at a 3.3 A resolution