메뉴 건너뛰기




Volumn 13, Issue 4, 2004, Pages 573-585

A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; PROTEIN TFIID; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR SAGA; UNCLASSIFIED DRUG;

EID: 1542285166     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(04)00087-5     Document Type: Article
Times cited : (455)

References (56)
  • 2
    • 0028038315 scopus 로고
    • Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism
    • Auble D.T., Hansen K.E., Mueller C.G., Lane W.S., Thorner J., Hahn S. Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev. 8:1994;1920-1934.
    • (1994) Genes Dev. , vol.8 , pp. 1920-1934
    • Auble, D.T.1    Hansen, K.E.2    Mueller, C.G.3    Lane, W.S.4    Thorner, J.5    Hahn, S.6
  • 3
    • 0038185286 scopus 로고    scopus 로고
    • Multiple mechanistically distinct functions of SAGA at the PHO5 promoter
    • Barbaric S., Reinke H., Horz W. Multiple mechanistically distinct functions of SAGA at the PHO5 promoter. Mol. Cell. Biol. 23:2003;3468-3476.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 3468-3476
    • Barbaric, S.1    Reinke, H.2    Horz, W.3
  • 4
    • 1542328960 scopus 로고    scopus 로고
    • Identification and distinct regulation of yeast TATA box-containing genes
    • Basehoar A.D., Zanton S.J., Pugh B.F. Identification and distinct regulation of yeast TATA box-containing genes. Cell. in press:2004.
    • (2004) Cell
    • Basehoar, A.D.1    Zanton, S.J.2    Pugh, B.F.3
  • 7
    • 0035423749 scopus 로고    scopus 로고
    • SAGA is an essential in vivo target of the yeast acidic activator Gal4p
    • Bhaumik S.R., Green M.R. SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev. 15:2001;1935-1945.
    • (2001) Genes Dev. , vol.15 , pp. 1935-1945
    • Bhaumik, S.R.1    Green, M.R.2
  • 8
    • 0036838096 scopus 로고    scopus 로고
    • Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo
    • Bhaumik S.R., Green M.R. Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo. Mol. Cell. Biol. 22:2002;7365-7371.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 7365-7371
    • Bhaumik, S.R.1    Green, M.R.2
  • 9
    • 0029984469 scopus 로고    scopus 로고
    • Tetrahymena histone acetyltransferase A: A homolog to yeast Gcn5p linking histone acetylation to gene activation
    • Brownell J.E., Zhou J., Ranalli T., Kobayashi R., Edmondson D.G., Roth S.Y., Allis C.D. Tetrahymena histone acetyltransferase A. a homolog to yeast Gcn5p linking histone acetylation to gene activation Cell. 84:1996;843-851.
    • (1996) Cell , vol.84 , pp. 843-851
    • Brownell, J.E.1    Zhou, J.2    Ranalli, T.3    Kobayashi, R.4    Edmondson, D.G.5    Roth, S.Y.6    Allis, C.D.7
  • 10
    • 0033486113 scopus 로고    scopus 로고
    • A new regulatory domain on the TATA-binding protein
    • Cang Y., Auble D.T., Prelich G. A new regulatory domain on the TATA-binding protein. EMBO J. 18:1999;6662-6671.
    • (1999) EMBO J. , vol.18 , pp. 6662-6671
    • Cang, Y.1    Auble, D.T.2    Prelich, G.3
  • 12
  • 14
    • 0037494893 scopus 로고    scopus 로고
    • Mot1 regulates the DNA binding activity of free TATA-binding protein in an ATP-dependent manner
    • Darst R.P., Dasgupta A., Zhu C., Hsu J.Y., Vroom A., Muldrow T., Auble D.T. Mot1 regulates the DNA binding activity of free TATA-binding protein in an ATP-dependent manner. J. Biol. Chem. 278:2003;13216-13226.
    • (2003) J. Biol. Chem. , vol.278 , pp. 13216-13226
    • Darst, R.P.1    Dasgupta, A.2    Zhu, C.3    Hsu, J.Y.4    Vroom, A.5    Muldrow, T.6    Auble, D.T.7
  • 16
    • 0035076210 scopus 로고    scopus 로고
    • Histone acetylation at promoters is differentially affected by specific activators and repressors
    • Deckert J., Struhl K. Histone acetylation at promoters is differentially affected by specific activators and repressors. Mol. Cell. Biol. 21:2001;2726-2735.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 2726-2735
    • Deckert, J.1    Struhl, K.2
  • 18
    • 0030003051 scopus 로고    scopus 로고
    • Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4
    • Edmondson D.G., Smith M.M., Roth S.Y. Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4. Genes Dev. 10:1996;1247-1259.
    • (1996) Genes Dev. , vol.10 , pp. 1247-1259
    • Edmondson, D.G.1    Smith, M.M.2    Roth, S.Y.3
  • 21
    • 0029907837 scopus 로고    scopus 로고
    • Characterization of the basal inhibitor of class II transcription NC2 from Saccharomyces cerevisiae
    • Goppelt A., Meisterernst M. Characterization of the basal inhibitor of class II transcription NC2 from Saccharomyces cerevisiae. Nucleic Acids Res. 24:1996;4450-4455.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4450-4455
    • Goppelt, A.1    Meisterernst, M.2
  • 22
    • 0030797349 scopus 로고    scopus 로고
    • Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: Characterization of an Ada complex and the SAGA (Spt/Ada) complex
    • Grant P.A., Duggan L., Cote J., Roberts S.M., Brownell J.E., Candau R., Ohba R., Owen-Hughes T., Allis C.D., Winston F.et al. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones. characterization of an Ada complex and the SAGA (Spt/Ada) complex Genes Dev. 11:1997;1640-1650.
    • (1997) Genes Dev. , vol.11 , pp. 1640-1650
    • Grant, P.A.1    Duggan, L.2    Cote, J.3    Roberts, S.M.4    Brownell, J.E.5    Candau, R.6    Ohba, R.7    Owen-Hughes, T.8    Allis, C.D.9    Winston, F.10
  • 23
    • 0032504104 scopus 로고    scopus 로고
    • A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation
    • Grant P.A., Schieltz D., Pray-Grant M.G., Steger D.J., Reese J.C., Yates J.R. 3rd, Workman J.L. A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation. Cell. 94:1998;45-53.
    • (1998) Cell , vol.94 , pp. 45-53
    • Grant, P.A.1    Schieltz, D.2    Pray-Grant, M.G.3    Steger, D.J.4    Reese, J.C.5    Yates III, J.R.6    Workman, J.L.7
  • 24
    • 0032110627 scopus 로고    scopus 로고
    • Temporal regulation of RNA polymerase II by Srb10 and Kin28 cyclin-dependent kinases
    • Hengartner C.J., Myer V.E., Liao S.M., Wilson C.J., Koh S.S., Young R.A. Temporal regulation of RNA polymerase II by Srb10 and Kin28 cyclin-dependent kinases. Mol. Cell. 2:1998;43-53.
    • (1998) Mol. Cell , vol.2 , pp. 43-53
    • Hengartner, C.J.1    Myer, V.E.2    Liao, S.M.3    Wilson, C.J.4    Koh, S.S.5    Young, R.A.6
  • 26
    • 0034717183 scopus 로고    scopus 로고
    • Structure and function of a human TAF(II)250 double bromodomain module
    • Jacobson R.H., Ladurner A.G., King D.S., Tjian R. Structure and function of a human TAF(II)250 double bromodomain module. Science. 288:2000;1422-1425.
    • (2000) Science , vol.288 , pp. 1422-1425
    • Jacobson, R.H.1    Ladurner, A.G.2    King, D.S.3    Tjian, R.4
  • 27
    • 0031865050 scopus 로고    scopus 로고
    • Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo
    • Kadosh D., Struhl K. Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo. Mol. Cell. Biol. 18:1998;5121-5127.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 5121-5127
    • Kadosh, D.1    Struhl, K.2
  • 28
    • 0031037248 scopus 로고    scopus 로고
    • The Dr1/DRAP1 heterodimer is a global repressor of transcription in vivo
    • Kim S., Na J.G., Hampsey M., Reinberg D. The Dr1/DRAP1 heterodimer is a global repressor of transcription in vivo. Proc. Natl. Acad. Sci. USA. 94:1997;820-825.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 820-825
    • Kim, S.1    Na, J.G.2    Hampsey, M.3    Reinberg, D.4
  • 29
    • 0031886049 scopus 로고    scopus 로고
    • Functional relationships of Srb10-Srb11 kinase, carboxy-terminal domain kinase CTDK-I, and transcriptional corepressor Ssn6-Tup1
    • Kuchin S., Carlson M. Functional relationships of Srb10-Srb11 kinase, carboxy-terminal domain kinase CTDK-I, and transcriptional corepressor Ssn6-Tup1. Mol. Cell. Biol. 18:1998;1163-1171.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 1163-1171
    • Kuchin, S.1    Carlson, M.2
  • 30
    • 0034686037 scopus 로고    scopus 로고
    • TAF-containing and TAF-independent forms of transcriptionally active TBP in vivo
    • Kuras L., Kosa P., Mencia M., Struhl K. TAF-containing and TAF-independent forms of transcriptionally active TBP in vivo. Science. 288:2000;1244-1248.
    • (2000) Science , vol.288 , pp. 1244-1248
    • Kuras, L.1    Kosa, P.2    Mencia, M.3    Struhl, K.4
  • 31
    • 0037291760 scopus 로고    scopus 로고
    • Bromodomains mediate an acetyl-histone encoded antisilencing function at heterochromatin boundaries
    • Ladurner A.G., Inouye C., Jain R., Tjian R. Bromodomains mediate an acetyl-histone encoded antisilencing function at heterochromatin boundaries. Mol. Cell. 11:2003;365-376.
    • (2003) Mol. Cell , vol.11 , pp. 365-376
    • Ladurner, A.G.1    Inouye, C.2    Jain, R.3    Tjian, R.4
  • 32
    • 0035425099 scopus 로고    scopus 로고
    • The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4
    • Larschan E., Winston F. The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. Genes Dev. 15:2001;1946-1956.
    • (2001) Genes Dev. , vol.15 , pp. 1946-1956
    • Larschan, E.1    Winston, F.2
  • 34
    • 0034686001 scopus 로고    scopus 로고
    • Distinct classes of yeast promoters revealed by differential TAF recruitment
    • Li X.Y., Bhaumik S.R., Green M.R. Distinct classes of yeast promoters revealed by differential TAF recruitment. Science. 288:2000;1242-1244.
    • (2000) Science , vol.288 , pp. 1242-1244
    • Li, X.Y.1    Bhaumik, S.R.2    Green, M.R.3
  • 35
    • 0037291695 scopus 로고    scopus 로고
    • Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation
    • Matangkasombut O., Buratowski S. Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation. Mol. Cell. 11:2003;353-363.
    • (2003) Mol. Cell , vol.11 , pp. 353-363
    • Matangkasombut, O.1    Buratowski, S.2
  • 37
    • 0036239962 scopus 로고    scopus 로고
    • Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast
    • Mencia M., Moqtaderi Z., Geisberg J.V., Kuras L., Struhl K. Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast. Mol. Cell. 9:2002;823-833.
    • (2002) Mol. Cell , vol.9 , pp. 823-833
    • Mencia, M.1    Moqtaderi, Z.2    Geisberg, J.V.3    Kuras, L.4    Struhl, K.5
  • 40
    • 0037426868 scopus 로고    scopus 로고
    • Srb10/Cdk8 regulates yeast filamentous growth by phosphorylating the transcription factor Ste12
    • Nelson C., Goto S., Lund K., Hung W., Sadowski I. Srb10/Cdk8 regulates yeast filamentous growth by phosphorylating the transcription factor Ste12. Nature. 421:2003;187-190.
    • (2003) Nature , vol.421 , pp. 187-190
    • Nelson, C.1    Goto, S.2    Lund, K.3    Hung, W.4    Sadowski, I.5
  • 41
    • 0031024494 scopus 로고    scopus 로고
    • Drosophila TAF(II)230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein
    • Nishikawa J., Kokubo T., Horikoshi M., Roeder R.G., Nakatani Y. Drosophila TAF(II)230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein. Proc. Natl. Acad. Sci. USA. 94:1997;85-90.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 85-90
    • Nishikawa, J.1    Kokubo, T.2    Horikoshi, M.3    Roeder, R.G.4    Nakatani, Y.5
  • 42
    • 0036289351 scopus 로고    scopus 로고
    • Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress
    • Proft M., Struhl K. Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress. Mol. Cell. 9:2002;1307-1317.
    • (2002) Mol. Cell , vol.9 , pp. 1307-1317
    • Proft, M.1    Struhl, K.2
  • 43
    • 0037123767 scopus 로고    scopus 로고
    • Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
    • Robyr D., Suka Y., Xenarios I., Kurdistani S.K., Wang A., Suka N., Grunstein M. Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell. 109:2002;437-446.
    • (2002) Cell , vol.109 , pp. 437-446
    • Robyr, D.1    Suka, Y.2    Xenarios, I.3    Kurdistani, S.K.4    Wang, A.5    Suka, N.6    Grunstein, M.7
  • 44
    • 0032560117 scopus 로고    scopus 로고
    • Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
    • Rundlett S.E., Carmen A.A., Suka N., Turner B.M., Grunstein M. Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature. 392:1998;831-835.
    • (1998) Nature , vol.392 , pp. 831-835
    • Rundlett, S.E.1    Carmen, A.A.2    Suka, N.3    Turner, B.M.4    Grunstein, M.5
  • 45
  • 46
    • 0036269973 scopus 로고    scopus 로고
    • Proteomics of the eukaryotic transcription machinery: Identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry
    • Sanders S.L., Jennings J., Canutescu A., Link A.J., Weil P.A. Proteomics of the eukaryotic transcription machinery. identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry Mol. Cell. Biol. 22:2002;4723-4738.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 4723-4738
    • Sanders, S.L.1    Jennings, J.2    Canutescu, A.3    Link, A.J.4    Weil, P.A.5
  • 49
    • 0033538531 scopus 로고    scopus 로고
    • Fundamentally different logic of gene regulation in eukaryotes and prokaryotes
    • Struhl K. Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell. 98:1999;1-4.
    • (1999) Cell , vol.98 , pp. 1-4
    • Struhl, K.1
  • 51
    • 0034707037 scopus 로고    scopus 로고
    • Global histone acetylation and deacetylation in yeast
    • Vogelauer M., Wu J., Suka N., Grunstein M. Global histone acetylation and deacetylation in yeast. Nature. 408:2000;495-498.
    • (2000) Nature , vol.408 , pp. 495-498
    • Vogelauer, M.1    Wu, J.2    Suka, N.3    Grunstein, M.4
  • 52
    • 0029787072 scopus 로고    scopus 로고
    • Transcription activation in cells lacking TAFIIS
    • Walker S.S., Reese J.C., Apone L.M., Green M.R. Transcription activation in cells lacking TAFIIS. Nature. 383:1996;185-188.
    • (1996) Nature , vol.383 , pp. 185-188
    • Walker, S.S.1    Reese, J.C.2    Apone, L.M.3    Green, M.R.4
  • 55
    • 0034387004 scopus 로고    scopus 로고
    • 25 years after the nucleosome model: Chromatin modifications
    • Wu J., Grunstein M. 25 years after the nucleosome model. chromatin modifications Trends Biochem. Sci. 25:2000;619-623.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 619-623
    • Wu, J.1    Grunstein, M.2
  • 56
    • 0035105035 scopus 로고    scopus 로고
    • TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast
    • Wu J., Suka N., Carlson M., Grunstein M. TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast. Mol. Cell. 7:2001;117-126.
    • (2001) Mol. Cell , vol.7 , pp. 117-126
    • Wu, J.1    Suka, N.2    Carlson, M.3    Grunstein, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.