The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA- binding protein

Molecular and Cellular Biology

Volumn 18, Issue 2, 1998, Pages 1003-1012

  Kokubo, Tetsuro ^a,b   Swanson, Mark J ^a   Nishikawa, Jun Ichi ^a,c   Hinnebusch, Alan G ^a   Nakatani, Yoshihiro ^a  

^a EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

^b NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^c OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN;

ARTICLE; COMPETITIVE INHIBITION; COMPLEX FORMATION; DNA BINDING; ENZYME ACTIVITY; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; TATA BOX; TEMPERATURE SENSITIVE MUTANT; TRANSCRIPTION REGULATION;

EID: 0031883573     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.18.2.1003     Document Type: Article

References (75)

1. Alani, E., L. Cao, and N. Kleckner. 1987. A method for gene disruption that allows repeated use of URA3 selection. Genetics 116:541-545.
2. Arndt, K. M., S. Ricupero-Hovasse, and F. Winston. 1995. TBP mutants defective in activated transcription in vivo. EMBO J. 14:1490-1497.
3. Aso, T., J. W. Conaway, and R. C. Conaway. 1994. Role of core promoter structure in assembly of the RNA polymerasc II preinitiation complex. A common pathway for formation of preinitiation intermediates at many TATA and TATA-less promoters. J. Biol. Chem. 269:26575-26583.
4. Bertolotti, A., Y. Lutz, D. J. Heard, P. Chambon, and L. Tora. 1996. hTAF(II)68, a novel RNA/ssDNA-binding protein with homology to the pro-oncoproteins TLS/FUS and EWS is associated with both TFIID and RNA polymerase II. EMBO J. 15:5022-5031.
5. Buratowski, S., and H. Zhou. 1992. Transcription factor IID mutants defective for interaction with transcription factor IIA. Science 255:1130-1132.
6. Burley, S. K., and R. G. Roeder. 1996. Biochemistry and structural biology of transcription factor IID (TFIID). Annu. Rev. Biochem. 65:769-799.
7. Chatterjee, S., and K. Struhl. 1995. Connecting a promoter-bound protein to TBP bypasses the need for a transcriptional activation domain. Nature 374: 820-822.
8. Chen, J. L., L. D. Attardi, C. P. Verrijzer, K. Yokomori, and R. Tjian. 1994. Assembly of recombinant TFIID reveals differential coactivator requirements for distinct transcriptional activators. Cell 79:93-105.
9. Chen, J. L., and R. Tjian. 1996. Reconstitution of TATA-binding protein-associated factor/TATA-binding protein complexes for in vitro transcription. Methods Enzymol. 273:208-217.
10. Chi, T., and M. Carey. 1996. Assembly of the isomerized TFIIA-TFIID-TATA ternary complex is necessary and sufficient for gene activation. Genes Dev. 10:2540-2550.
11. Chi, T., P. Lieberman, K. Ellwood, and M. Carey. 1995. A general mechanism for transcriptional synergy by eukaryotic activators. Nature 377:254-257.
12. Chiang, C.-M., H. Ge, Z. Wang, A. Hoffmann, and R. G. Roeder. 1993. Unique TATA-binding protein-containing complexes and cofactors involved in transcription by RNA polymerases II and III. EMBO J. 12:2749-2762.
13. Chiang, C. M., and R. G. Roeder. 1995. Cloning of an intrinsic human TFIID subunit that interacts with multiple transcriptional activators. Science 267: 531-536.
14. Christianson, T. W., R. S. Sikorski, M. Dante, J. H. Shero, and P. Hieter. 1992. Multifunctional yeast high-copy-number shuttle vectors. Gene 110: 119-122.
15. Dikstein, R., S. Ruppert, and R. Tjian. 1996. TAFII250 is a bipartite protein kinase that phosphorylates the base transcription factor RAP74. Cell 84:781-790.
16. Dikstein, R., S. Zhou, and R. Tjian. 1996. Human TAFII105 is a cell type-specific TFIID subunit related to hTAFII130. Cell 87:137-146.
17. Dynlacht, B. D., T. Hoey, and R. Tjian. 1991. Isolation of coactivators associated with the TATA-binding protein that mediate transcriptional activation. Cell 66:563-576.
18. Dynlacht, B. D., R. O. Weinzierl, A. Admon, and R. Tjian. 1993. The dTAFII80 subunit of Drosophila TFIID contains beta-transducin repeats. Nature 363:176-179.
19. Geiger, J. H., S. Hahn, S. Lee, and P. B. Sigler. 1996. Crystal structure of the yeast TFIIA/TBP/DNA complex. Science 272:830-836.
20. Gietz, R. D., and A. Sugino. 1988. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527-534.
21. Goodrich, J. A., T. Hoey, C. J. Thut, A. Admon, and R. Tjian. 1993. Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB. Cell 75:519-530.
22. Guthrie, C., and G. R. Fink (ed.). 1991. Methods in enzymology, vol. 194. Guide to yeast genetics and molecular biology. Academic Press, Inc., San Diego, Calif.
23. Henry, N. L., A. M. Campbell, W. J. Feaver, D. Poon, P. A. Weil, and R. D. Kornberg. 1994. TFIIF-TAF-RNA polymerase II connection. Genes Dev. 8:2868-2878.
24. Hisatake, K., T. Ohta, R. Takada, M. Guermah, M. Horikoshi, Y. Nakatani, and R. G. Roeder. 1995. Evolutionary conservation of human TATA-binding-polypeptide-associated factors TAFII31 and TAFII80 and interactions of TAFII80 with other TAFs and with general transcription factors. Proc. Natl. Acad. Sci. USA 92:8195-8199.
25. Hoey, T., R. O. Weinzierl, G. Gill, J. L. Chen, B. D. Dynlacht, and R. Tjian. 1993. Molecular cloning and functional analysis of Drosophila TAFI10 reveal properties expected of coactivators. Cell 72:247-260.
26. Hoffmann, A., and R. G. Roeder. 1996. Cloning and characterization of human TAF20/15. Multiple interactions suggest a central role in TFIID complex formation. J. Biol. Chem. 271:18194-18202.
27. Horikoshi, M., M. F. Carey, H. Kakidani, and R. G. Roeder. 1988. Mechanism of action of a yeast activator: direct effect of GAL4 derivatives on mammalian TFIID-promoter interactions. Cell 54:665-669.
28. Jacq, X., C. Brou, Y. Lutz, I. Davidson, P. Chambon, and L. Tora. 1994. Human TAFII30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor. Cell 79:107-117.
29. Kang, J. J., D. T. Auble, J. A. Ranish, and S. Hahn. 1995. Analysis of the yeast transcription factor TFIIA: distinct functional regions and a polymerase II-specific role in basal and activated transcription. Mol. Cell. Biol. 15:1234-1243.
30. Kim, T. K., S. Hashimoto, R. J. Kelleher, P. M. Flanagan, R. D. Kornberg, M. Horikoshi, and R. G. Roeder. 1994. Effects of activation-defective TBP mutations on transcription initiation in yeast. Nature 369:252-255.
31. Klages, N., and M. Strubin. 1995. Stimulation of RNA polymerase II transcription initiation by recruitment of TBP in vivo. Nature 374:822-823.
32. Klebanow, E. R., D. Poon, S. Zhou, and P. A. Weil. 1997. Cloning and characterization of an essential Saccharomyces cerevisiae gene, TAF40, which encodes yTAFII40, an RNA polymerase II-specific TATA-binding protein-associated factor. J. Biol. Chem. 272:9436-9442.
33. Klebanow, E. R., D. Poon, S. Zhou, and P. A. Weil. 1996. Isolation and characterization of TAF25, an essential yeast gene that encodes an RNA polymerase II-specific TATA-binding protein-associated factor. J. Biol. Chem. 271:13706-13715.
34. Klein, C., and K. Struhl. 1994. Increased recruitment of TATA-binding protein to the promoter by transcriptional activation domains in vivo. Science 266:280-282.
35. Kokubo, K., S. Yamashita, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1994. Interaction between the N-terminal domain of the 230 kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATA box-binding. Proc. Natl. Acad. Sci. USA 91:3520-3524.
36. Kokubo, T., D.-W. Gong, R. G. Roeder, M. Horikoshi, and Y. Nakatani. 1993. The Drosophila 110-kDa transcription factor TFIID subunit directly interacts with the N-terminal region of the 230-kDa subunit. Proc. Natl. Acad. Sci. USA 90:5896-5900.
37. Kokubo, T., D.-W. Gong, J. C. Wootton, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1994. Molecular cloning of Drosophila TFIID subunits. Nature 367:484-487.
38. Kokubo, T., D.-W. Gong, S. Yamashita, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1993. Drosophila 230-kDa TFIID subunit, a functional homolog of the human cell cycle gene product, negatively regulates DNA binding of the TATA box-binding subunit of TFIID. Genes Dev. 7:1033-1046.
39. Kokubo, T., D.-W. Gong, S. Yamashita, R. Takada, R. G. Roeder, M. Horikoshi, and Y. Nakatani. 1993. Molecular cloning, expression, and characterization of the Drosophila 85-kilodalton TFIID subunit. Mol. Cell. Biol. 13: 7859-7863.
40. Kokubo, T., R. Takada, S. Yamashita, D.-W. Gong, R. G. Roeder, M. Horikoshi, and Y. Nakatani. 1993. Identification of TFIID components required for transcriptional activation by upstream stimulatory factor. J. Biol. Chem. 268:17554-17558.
41. Kunkel, T. A., J. D. Roberts, and R. A. Zakour. 1987. Rapid and efficient site-specific mutagenesis without phcnotypic selection. Methods Enzymol. 154:367-382.
42. Lavigne, A. C., G. Mengus, M. May, V. Dubrovskaya, L. Tora, P. Chambon, and I. Davidson. 1996. Multiple interactions between hTAFII55 and other TFIID subunits. Requirements tor the formation of stable ternary complexes between hTAFII55 and the TATA-binding protein. J. Biol. Chem. 271: 19774-19780.
43. Lee, M., and K. Struhl. 1995. Mutations on the DNA-binding surface of TATA-binding protein can specifically impair the response to acidic activators in vivo. Mol. Cell. Biol. 15:5461-5469.
44. Lieberman, P. M., and A. J. Berk. 1994. A mechanism for TAFs in transcriptional activation: activation domain enhancement of TFIID-TFIIA-promoter DNA complex formation. Genes Dev. 8:995-1006.
45. Mengus, G., M. May, X. Jacq, A. Staub, L. Tora, P. Chambon, and I. Davidson. 1995. Cloning and characterization of hTAFII18, hTAFII20 and hTAFII28: three subunits of the human transcription factor TFIID. EMBO J. 14:1520-1531.
46. Mizzen, C. A., X. J. Yang, T. Kokubo, J. E. Brownell, A. J. Bannister, T. Owen-Hughes, J. Workman, L. Wang, S. L. Berger, T. Kouzarides, Y. Nakatani, and C. D. Allis. 1996. The TAF(II)250 subunit of TFIID has histone acetyltransferase activity. Cell 87:1261-1270.
47. Moqtaderi, Z., Y. Bai, D. Poon, P. A. Weil, and K. Struhl. 1996. TBP-associated factors are not generally required for transcriptional activation in yeast. Nature 383:188-191. (Comments.)
48. Moqtaderi, Z.. J. D. Yale, K. Struhl, and S. Buratowski. 1996. Yeast homologues of higher eukaryotic TFIID subunits. Proc. Natl. Acad. Sci. USA 93:14654-14658.
49. Nakatani, Y. Unpublished results.
50. Nakatani, Y., M. Horikoshi, M. Brenner, T. Yamamoto, F. Besnard, R. G. Roeder, and E. Freese. 1990. A downstream initiation element required for efficient TATA box binding and in vitro function of TFIID. Nature 348:86-88.
51. Nikolov, D. B., S. H. Hu, J. Lin, A. Gasch, A. Hoffmann, M. Horikoshi, N. H. Chua, R. G. Roeder, and S. K. Burley. 1992. Crystal structure of TFIID TATA-box binding protein. Nature 360:40-46.
52. Nishikawa, J., T. Kokubo, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1997. Drosophila TAF(II)230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein. Proc. Natl. Acad. Sci. USA 94:85-90.
53. Poon, D., Y. Bai, A. M. Campbell, S. Bjorklund, Y.-J. Kim, S. Zhou, R. D. Kornberg, and P. A. Weil. 1995. Identification and characterization of a TFIID-like multiprotein complex from Saccharomyces cerevisiac. Proc. Natl. Acad. Sci. USA 92:8224-8228.
54. Poon, D., and P. A. Weil. 1993. Immunopurification of yeast TATA-binding protein and associated factors. Presence of transcription factor IIIB transcriptional activity. J. Biol. Chem. 268:15325-15328.
55. Reese, J. C., L. Apone, S. S. Walker, L. A. Griffin, and M. R. Green. 1994. Yeast TAFIIs in a multisubunit complex required for activated transcription. Nature 371:523-527.
56. IIS directing synergistic activation of transcription. Science 270:1783-1788.
57. Shen, W.-C., and M. R. Green. 1997. Yeast TAFII145 functions as a core promoter selectivity factor, not a general coactivator. Cell 90:615-624.
58. Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
59. Stargell, L. A., and K. Struhl. 1995. The TBP-TFIIA interaction in the response to acidic activators in vivo. Science 269:75-78.
60. Takada, R., Y. Nakatani, A. Hoffmann, T. Kokubo, S. Hasegawa, R. G. Roeder, and M. Horikoshi. 1992. Identification of human TFIID components and direct interaction between a 250-kDa polypeptide and the TATA box-binding protein (TFIIDτ). Proc. Natl. Acad. Sci. USA 89:11809-11813.
61. Tan, S., Y. Hunziker, D. F. Sargent, and T. J. Richmond. 1996. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature 381:127-134.
62. Tanese, N., B. F. Pugh, and R. Tjian. 1991. Coactivators for a proline-rich activator purified from the multisubunit human TFIID complex. Genes Dev. 5:2212-2224.
63. Tanese, N., D. Saluja, M. F. Vassallo, J. L. Chen, and A. Admon. 1996. Molecular cloning and analysis of two subunits of the human TFIID complex: hTAFII130 and hTAFII100. Proc. Natl. Acad. Sci. USA 93:13611-13616.
64. Tang, H., X. Sun, D. Reinberg, and R. H. Ebright. 1996. Protein-protein interactions in eukaryotic transcription initiation: structure of the preinitiation complex. Proc. Natl. Acad. Sci. USA 93:1119-1124.
65. Tao, Y., M. Guermah, E. Martinez, T. Oegelschlager, S. Hasegawa, R. Takada, T. Yamamoto, M. Horikoshi, and R. G. Roeder. 1997. Specific interactions and potential functions of human TAFII100. J. Biol. Chem. 272:6714-6721.
66. Thut, C. J., J. L. Chen, R. Klemm, and R. Tjian. 1995. p53 transcriptional activation mediated by coactivators TAFII40 and TAFII60. Science 267:100-104.
67. Verrijzer, C. P., J. L. Chen, K. Yokomori, and R. Tjian. 1995. Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II. Cell 81:1115-1125.
68. Verrijzer, C. P., K. Yokomori, J. L. Chen, and R. Tjian. 1994. Drosophila TAFII150: similarity to yeast gene TSM-1 and specific binding to core promoter DNA. Science 264:933-941.
69. Wade, P. A., and J. A. Jaehning. 1996. Transcriptional corepression in vitro: a Mot1p-associated form of TATA-binding protein is required tor repression by Leu3p. Mol. Cell. Biol. 16:1641-1648.
70. Walker, S. S., J. C. Reese, L. M. Apone, and M. R. Green. 1996. Transcription activation in cells lacking TAFIIs. Nature 383:185-188.
71. Weinzierl, R. O., B. D. Dynlacht, and R. Tjian. 1993. Largest subunit of Drosophila transcription factor IID directs assembly of a complex containing TBP and a coactivator. Nature 362:511-517.
72. Weinzierl, R. O., S. Ruppert, B. D. Dynlacht, N. Tanese, and R. Tjian. 1993. Cloning and expression of Drosophila TAFII60 and human TAFII70 reveal conserved interactions with other subunits of TFIID. EMBO J. 12:5303-5309.
73. Yamashita, S., K. Wada, M. Horikoshi, D. W. Gong, T. Kokubo, K. Hisatake, N. Yokotani, S. Malik, R. G. Roeder, and Y. Nakatani. 1992. Isolation and characterization of a cDNA encoding Drosophila transcription factor TFIIB. Proc. Natl. Acad. Sci. USA 89:2839-2843.
74. Yokomori, K., J. L. Chen, A. Admon, S. Zhou, and R. Tjian. 1993. Molecular cloning and characterization of dTAFII30 alpha and dTAFII30 beta: two small subunits of Drosophila TFIID. Genes Dev. 7:2587-2597.
75. Zhou, Q., P. M. Lieberman, T. G. Boyer, and A. J. Berk. 1992. Holo-TFIID supports transcriptional stimulation by diverse activators and from a TATA-less promoter. Genes Dev. 6:1964-1974.