메뉴 건너뛰기




Volumn 12, Issue 1, 1998, Pages 34-44

New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB

Author keywords

DNA binding; Helix turn helix; IIB recognition element; TATA element; Transcription factor IIB

Indexed keywords

RNA POLYMERASE II; TRANSCRIPTION FACTOR;

EID: 0031882652     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.12.1.34     Document Type: Article
Times cited : (316)

References (44)
  • 1
    • 0029120954 scopus 로고
    • Solution structure of the carboxy-terminal core domain of human TFIIB: Similarity to cyclin a and interaction with TATA-binding protein
    • Bagby, S., S. Kim, E. Maldonado, K. Tonk, D. Reinberg, and M. Ikura. 1995. Solution structure of the carboxy-terminal core domain of human TFIIB: Similarity to cyclin A and interaction with TATA-binding protein. Cell 82: 857-867.
    • (1995) Cell , vol.82 , pp. 857-867
    • Bagby, S.1    Kim, S.2    Maldonado, E.3    Tonk, K.4    Reinberg, D.5    Ikura, M.6
  • 2
    • 0026657433 scopus 로고
    • Refined 1.8 Å crystal structure of the lambda repressor-operator complex
    • Beamer, L. and C. Pabo. 1992. Refined 1.8 Å crystal structure of the lambda repressor-operator complex. J. Mol. Biol. 227: 177-196.
    • (1992) J. Mol. Biol. , vol.227 , pp. 177-196
    • Beamer, L.1    Pabo, C.2
  • 3
    • 0025572707 scopus 로고
    • Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection
    • Blackwell, T. and H. Weintraub. 1990. Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection. Science 250: 1104-1110.
    • (1990) Science , vol.250 , pp. 1104-1110
    • Blackwell, T.1    Weintraub, H.2
  • 6
    • 0029971668 scopus 로고    scopus 로고
    • Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters
    • Burke, T. and J. Kadonaga. 1996. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes & Dev. 10: 711-724.
    • (1996) Genes & Dev. , vol.10 , pp. 711-724
    • Burke, T.1    Kadonaga, J.2
  • 7
    • 0028061282 scopus 로고
    • Promoter structure, promoter recognition, and transcription activation in prokaryotes
    • Busby, S. and R. Ebright. 1994. Promoter structure, promoter recognition, and transcription activation in prokaryotes. Cell 79: 743-746.
    • (1994) Cell , vol.79 , pp. 743-746
    • Busby, S.1    Ebright, R.2
  • 9
    • 0024999332 scopus 로고
    • Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
    • Dodd, B. and J. Egan. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18: 5019-5026.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 5019-5026
    • Dodd, B.1    Egan, J.2
  • 10
    • 0026356038 scopus 로고
    • Identification of amino acid-base pair contacts by genetic methods
    • Ebright, R. 1991. Identification of amino acid-base pair contacts by genetic methods. Methods Enzymol. 208: 620-640.
    • (1991) Methods Enzymol. , vol.208 , pp. 620-640
    • Ebright, R.1
  • 11
    • 0026802039 scopus 로고
    • Factors involved in specific transcription initiation by mammalian RNA polymerase II: Identification and characterization of factor IIH
    • Flores, O., H. Lu, and D. Reinberg. 1992. Factors involved in specific transcription initiation by mammalian RNA polymerase II: Identification and characterization of factor IIH. J. Biol. Chem. 267: 2786-2793.
    • (1992) J. Biol. Chem. , vol.267 , pp. 2786-2793
    • Flores, O.1    Lu, H.2    Reinberg, D.3
  • 12
    • 0028352861 scopus 로고
    • Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II
    • Goodrich, J. and R. Tjian. 1994. Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Cell 77: 145-156.
    • (1994) Cell , vol.77 , pp. 145-156
    • Goodrich, J.1    Tjian, R.2
  • 13
    • 0026651748 scopus 로고
    • DNA-sequence determinants for binding of the Escherichia coli catabolite gene activator protein
    • Gunasekera, A., Y. Ebright, and R. Ebright. 1992. DNA-sequence determinants for binding of the Escherichia coli catabolite gene activator protein. J. Biol. Chem. 267: 14713-14720.
    • (1992) J. Biol. Chem. , vol.267 , pp. 14713-14720
    • Gunasekera, A.1    Ebright, Y.2    Ebright, R.3
  • 14
    • 0027159966 scopus 로고
    • Multiple functional domains of human transcription factor IIB: Distinct interactions with two general transcription factors and RNA polymerase
    • Ha, I., S. Roberts, E. Maldonado, X. Sun, L.-U. Kim, M. Green, and D. Reinberg. 1993. Multiple functional domains of human transcription factor IIB: Distinct interactions with two general transcription factors and RNA polymerase. Genes &. Dev. 7: 1021-1032.
    • (1993) Genes &. Dev. , vol.7 , pp. 1021-1032
    • Ha, I.1    Roberts, S.2    Maldonado, E.3    Sun, X.4    Kim, L.-U.5    Green, M.6    Reinberg, D.7
  • 15
    • 0030337874 scopus 로고    scopus 로고
    • Fluorescence anisotropy: Rapid, quantitative assay for protein-DNA and protein-protein interaction
    • Heyduk, T., Y. Ma, H. Tang, and R. Ebright. 1996. Fluorescence anisotropy: Rapid, quantitative assay for protein-DNA and protein-protein interaction. Methods Enzymol. 274:492-502.
    • (1996) Methods Enzymol. , vol.274 , pp. 492-502
    • Heyduk, T.1    Ma, Y.2    Tang, H.3    Ebright, R.4
  • 16
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognizing the minor groove of a TATa element
    • Kim, J., D. Nikolov, and S. Burley. 1993. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365: 520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.1    Nikolov, D.2    Burley, S.3
  • 17
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Kim, Y., J. Geiger, S. Hahn, and P. Sigler. 1993. Crystal structure of a yeast TBP/TATA-box complex. Nature 365: 512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.2    Hahn, S.3    Sigler, P.4
  • 19
    • 0031562901 scopus 로고    scopus 로고
    • The 2.1-Å crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/ TATA-box
    • Kosa, P., G. Ghosh, B. DeDecker, and P. Sigler. 1997. The 2.1-Å crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/ TATA-box. Proc. Natl. Acad. Sci. 94: 6042-6047.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 6042-6047
    • Kosa, P.1    Ghosh, G.2    DeDecker, B.3    Sigler, P.4
  • 20
    • 0025888264 scopus 로고
    • Efficient site-directed mutagenesis using uracil-containing DNA
    • Kunkel, T., K. Bebenek, and J. McClary. 1991. Efficient site-directed mutagenesis using uracil-containing DNA. Methods Enzymol. 204: 125-138.
    • (1991) Methods Enzymol. , vol.204 , pp. 125-138
    • Kunkel, T.1    Bebenek, K.2    McClary, J.3
  • 21
    • 0029785839 scopus 로고    scopus 로고
    • High-resolution mapping of nucleo-protein complexes by site-specific protein-DNA photocross-linking: Organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex
    • Lagrange, T., T.-K. Kim, G. Orphanides, Y. Ebright, R. Ebright, and D. Reinberg. 1996. High-resolution mapping of nucleo-protein complexes by site-specific protein-DNA photocross-linking: Organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex. Proc. Natl. Acad. Sci. 93: 10620-10625.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 10620-10625
    • Lagrange, T.1    Kim, T.-K.2    Orphanides, G.3    Ebright, Y.4    Ebright, R.5    Reinberg, D.6
  • 22
    • 0029081571 scopus 로고
    • A model for TFIIB binding to the TBP-DNA complex
    • Lee, S. and S. Hahn. 1995. A model for TFIIB binding to the TBP-DNA complex. Nature 376: 609-612.
    • (1995) Nature , vol.376 , pp. 609-612
    • Lee, S.1    Hahn, S.2
  • 23
    • 0025790439 scopus 로고
    • The nonphosphorylated form of RNA polymerase II preferentially associates with the preinitiation complex
    • Lu, H., O. Flores, R. Weinmann, and D. Reinberg. 1991. The nonphosphorylated form of RNA polymerase II preferentially associates with the preinitiation complex. Proc. Natl. Acad. Sci. 88: 10004-10008.
    • (1991) Proc. Natl. Acad. Sci. , vol.88 , pp. 10004-10008
    • Lu, H.1    Flores, O.2    Weinmann, R.3    Reinberg, D.4
  • 24
    • 0029887308 scopus 로고    scopus 로고
    • Fluorescence polarization analysis of protein-DNA and protein-protein interactions
    • Lundblad, J., M. Laurance, and R. Goodman. 1996. Fluorescence polarization analysis of protein-DNA and protein-protein interactions. Mol. Endocrinol. 10: 607-612.
    • (1996) Mol. Endocrinol. , vol.10 , pp. 607-612
    • Lundblad, J.1    Laurance, M.2    Goodman, R.3
  • 25
    • 0025201177 scopus 로고
    • Role of transcription factors TFIIA, TFIID, and TFIIB during formation of a transcription-competent complex
    • Maldonado, E., I. Ha, P. Cortes, L. Weis, and D. Reinberg. 1990. Role of transcription factors TFIIA, TFIID, and TFIIB during formation of a transcription-competent complex. Mol. Cell. Biol. 10: 6335-6347.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 6335-6347
    • Maldonado, E.1    Ha, I.2    Cortes, P.3    Weis, L.4    Reinberg, D.5
  • 26
    • 0025607835 scopus 로고
    • Defining target sequences of DNA-binding proteins by random selection and PCR: Determination of the GCN4 binding sequence repertoire
    • Mavrothalassitis, G., G. Beal, and T. Papas. 1990. Defining target sequences of DNA-binding proteins by random selection and PCR: Determination of the GCN4 binding sequence repertoire. DNA 9: 783-788.
    • (1990) DNA , vol.9 , pp. 783-788
    • Mavrothalassitis, G.1    Beal, G.2    Papas, T.3
  • 27
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
    • Miller, J. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.1
  • 28
    • 0031022752 scopus 로고    scopus 로고
    • RNA polymerase II transcription initiation: A structural view
    • Nikolov, D. and S. Burley. 1997. RNA polymerase II transcription initiation: A structural view. Proc. Natl. Acad. Sci. 94: 15-22.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 15-22
    • Nikolov, D.1    Burley, S.2
  • 30
    • 0024365536 scopus 로고
    • Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: Analysis of yeast GCN4 protein
    • Oliphant, A., C. Brandi, and K. Struhl. 1989. Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: Analysis of yeast GCN4 protein. Mol Cell. Biol. 9: 2944-2949.
    • (1989) Mol Cell. Biol. , vol.9 , pp. 2944-2949
    • Oliphant, A.1    Brandi, C.2    Struhl, K.3
  • 31
    • 0029846871 scopus 로고    scopus 로고
    • The general transcription factors of RNA polymerase II
    • Orphanides, G., T. Lagrange, and D. Reinberg. 1996. The general transcription factors of RNA polymerase II. Genes & Dev. 10: 2657-2683.
    • (1996) Genes & Dev. , vol.10 , pp. 2657-2683
    • Orphanides, G.1    Lagrange, T.2    Reinberg, D.3
  • 33
    • 0026682657 scopus 로고
    • Transcription factors: Structural families and principles of DNA recognition
    • Pabo, C. and R. Sauer. 1992. Transcription factors: Structural families and principles of DNA recognition. Annu. Rev. Biochem. 61: 1053-1095.
    • (1992) Annu. Rev. Biochem. , vol.61 , pp. 1053-1095
    • Pabo, C.1    Sauer, R.2
  • 34
    • 0030593510 scopus 로고    scopus 로고
    • Structure of the CAP-DNA complex at 2.5 resolution: A complete picture of the protein-DNA interface
    • Parkinson, G., C. Wilson, A. Gunasekera, Y. Ebright, R. Ebright, and H. Berman. 1996. Structure of the CAP-DNA complex at 2.5 resolution: A complete picture of the protein-DNA interface. J. Mol. Biol. 260: 395-408.
    • (1996) J. Mol. Biol. , vol.260 , pp. 395-408
    • Parkinson, G.1    Wilson, C.2    Gunasekera, A.3    Ebright, Y.4    Ebright, R.5    Berman, H.6
  • 35
  • 36
    • 0029294548 scopus 로고
    • A role for activator-mediated TFIIB recruitment in diverse aspects of transcriptional regulation
    • Roberts, S., B. Choy, S. Walker, Y.-S. Lin, and M. Green. 1995. A role for activator-mediated TFIIB recruitment in diverse aspects of transcriptional regulation. Curr. Biol. 5: 508-516.
    • (1995) Curr. Biol. , vol.5 , pp. 508-516
    • Roberts, S.1    Choy, B.2    Walker, S.3    Lin, Y.-S.4    Green, M.5
  • 37
    • 0030249381 scopus 로고    scopus 로고
    • The role of general initiation factors in transcription by RNA polymerase II
    • Roeder, R. 1996. The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21: 327-335.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 327-335
    • Roeder, R.1
  • 38
    • 0022374891 scopus 로고
    • Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATa box region
    • Sawadogo, M. and R. Roeder. 1985. Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATA box region. Cell 43: 165-175.
    • (1985) Cell , vol.43 , pp. 165-175
    • Sawadogo, M.1    Roeder, R.2
  • 39
    • 0030793327 scopus 로고    scopus 로고
    • Yeast TAFII145 functions as a core promoter selectivity factor, not a general coactivator
    • Shen, W. and M. Green. 1997. Yeast TAFII145 functions as a core promoter selectivity factor, not a general coactivator. Cell 90: 615-624.
    • (1997) Cell , vol.90 , pp. 615-624
    • Shen, W.1    Green, M.2
  • 40
    • 0030061842 scopus 로고    scopus 로고
    • Protein-protein interactions in eukaryotic transcription initiation: Structure of the pre-initiation complex
    • Tang, H., X. Sun, D. Reinberg, and R. Ebright. 1996. Protein-protein interactions in eukaryotic transcription initiation: Structure of the pre-initiation complex. Proc. Natl. Acad. Sci 93: 1119-1124.
    • (1996) Proc. Natl. Acad. Sci , vol.93 , pp. 1119-1124
    • Tang, H.1    Sun, X.2    Reinberg, D.3    Ebright, R.4
  • 41
    • 0025331709 scopus 로고
    • Target Detection Assay (TDA): A versatile procedure to determine DNA binding sites as demonstrated on SP1 protein
    • Thiesen, H.-J. and C. Bach. 1990. Target Detection Assay (TDA): A versatile procedure to determine DNA binding sites as demonstrated on SP1 protein. Nucleic Acids Res. 18: 3203-3209.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3203-3209
    • Thiesen, H.-J.1    Bach, C.2
  • 43
    • 0030986209 scopus 로고    scopus 로고
    • Accurate positioning of RNA polymerase II on a natural TATA-less promoter is independent of TATA-binding-protein-associated factors and initiator-binding proteins
    • Weis, L. and D. Reinberg. 1997. Accurate positioning of RNA polymerase II on a natural TATA-less promoter is independent of TATA-binding-protein-associated factors and initiator-binding proteins. Mol. Cell. Biol. 17: 2973-2984.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 2973-2984
    • Weis, L.1    Reinberg, D.2
  • 44
    • 0026344955 scopus 로고
    • Upstream box/TATA box order is the major determinant of the direction of transcription
    • Xu, L., M. Thali, and W. Schaffner. 1991. Upstream box/TATA box order is the major determinant of the direction of transcription. Nucleic Acids Res. 19: 6699-6704.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6699-6704
    • Xu, L.1    Thali, M.2    Schaffner, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.