-
1
-
-
79960911703
-
The reality of pervasive transcription
-
(doi:10.1371/journal.pbio.1000625), (discussion e1001102)
-
Clark MB et al. 2011 The reality of pervasive transcription. PLoS Biol. 9, e1000625 (discussion e1001102). (doi:10.1371/journal.pbio.1000625)
-
(2011)
PLoS Biol.
, vol.9
-
-
Clark, M.B.1
-
2
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
(doi:10.1126/science.1112014)
-
Carninci P et al. 2005 The transcriptional landscape of the mammalian genome. Science 309, 1559-1563. (doi:10.1126/science.1112014)
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
-
3
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
(doi:10.1038/nature05874), ENCODE Project Consortium et al
-
ENCODE Project Consortium et al. 2007 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816. (doi:10.1038/nature05874)
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
4
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
(doi:10.1126/science.1112009)
-
Katayama S et al. 2005 Antisense transcription in the mammalian transcriptome. Science 309, 1564-1566. (doi:10.1126/science.1112009)
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
-
5
-
-
33646473694
-
Complex loci in human and mouse genomes
-
(doi:10.1371/ journal.pgen.0020047)
-
Engström PG et al. 2006 Complex loci in human and mouse genomes. PLoS Genet. 2, e47. (doi:10.1371/ journal.pgen.0020047)
-
(2006)
PLoS Genet.
, vol.2
-
-
Engström, P.G.1
-
6
-
-
84865757142
-
Landscape of transcription in human cells
-
(doi:10.1038/ nature11233)
-
Djebali S et al. 2012 Landscape of transcription in human cells. Nature 489, 101-108. (doi:10.1038/ nature11233)
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
-
7
-
-
22244442468
-
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
-
(doi:10.1101/gr.3455305)
-
Kapranov P, Drenkow J, Cheng J, Long J, Helt G, Dike S, Gingeras TR. 2005 Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays. Genome Res 15, 987-997. (doi:10.1101/gr.3455305)
-
(2005)
Genome Res
, vol.15
, pp. 987-997
-
-
Kapranov, P.1
Drenkow, J.2
Cheng, J.3
Long, J.4
Helt, G.5
Dike, S.6
Gingeras, T.R.7
-
8
-
-
0037012881
-
Largescale transcriptional activity in chromosomes 21 and 22
-
(doi:10.1126/science. 1068597)
-
Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL, Fodor SPA, Gingeras TR. 2002 Largescale transcriptional activity in chromosomes 21 and 22. Science 296, 916-919. (doi:10.1126/science. 1068597)
-
(2002)
Science
, vol.296
, pp. 916-919
-
-
Kapranov, P.1
Cawley, S.E.2
Drenkow, J.3
Bekiranov, S.4
Strausberg, R.L.5
Fodor, S.P.A.6
Gingeras, T.R.7
-
9
-
-
0037442493
-
The transcriptional activity of human chromosome 22
-
(doi:10.1101/gad.1055203)
-
Rinn JL et al. 2003 The transcriptional activity of human chromosome 22. Genes Dev. 17, 529-540. (doi:10.1101/gad.1055203)
-
(2003)
Genes Dev.
, vol.17
, pp. 529-540
-
-
Rinn, J.L.1
-
10
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
(doi:10.1126/science. 1103388)
-
Bertone P et al. 2004 Global identification of human transcribed sequences with genome tiling arrays. Science 306, 2242-2246. (doi:10.1126/science. 1103388)
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
-
11
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
(doi:10.1126/science. 1108625)
-
Cheng J et al. 2005 Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308, 1149-1154. (doi:10.1126/science. 1108625)
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
-
12
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
(doi:10.1038/nature01266)
-
Okazaki Y et al. 2002 Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420, 563-573. (doi:10.1038/nature01266)
-
(2002)
Nature
, vol.420
, pp. 563-573
-
-
Okazaki, Y.1
-
13
-
-
34548291568
-
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
-
(doi:10.1242/jcs.009357)
-
Sone M, Hayashi T, Tarui H, Agata K, Takeichi M, Nakagawa S. 2007 The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. J. Cell. Sci. 120, 2498-2506. (doi:10.1242/jcs.009357)
-
(2007)
J. Cell. Sci.
, vol.120
, pp. 2498-2506
-
-
Sone, M.1
Hayashi, T.2
Tarui, H.3
Agata, K.4
Takeichi, M.5
Nakagawa, S.6
-
14
-
-
57149107578
-
Differentiating protein-coding and noncoding RNA: Challenges and ambiguities
-
(doi:10.1371/journal.pcbi.1000176)
-
Dinger ME, Pang KC, Mercer TR, Mattick JS. 2008 Differentiating protein-coding and noncoding RNA: challenges and ambiguities. PLoS Comput. Biol. 4, e1000176. (doi:10.1371/journal.pcbi.1000176)
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
Mattick, J.S.4
-
15
-
-
17844363942
-
Disclosing hidden transcripts: Mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized
-
(doi:10.1101/gr.3155905)
-
Kiyosawa H, Mise N, Iwase S, Hayashizaki Y, Abe K. 2005 Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized. Genome Res. 15, 463-474. (doi:10.1101/gr.3155905)
-
(2005)
Genome Res.
, vol.15
, pp. 463-474
-
-
Kiyosawa, H.1
Mise, N.2
Iwase, S.3
Hayashizaki, Y.4
Abe, K.5
-
16
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
(doi:10.1101/gr.132159.111)
-
Derrien T et al. 2012 The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789. (doi:10.1101/gr.132159.111)
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
-
17
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
(doi:10. 1038/nature07672)
-
Guttman M et al. 2009 Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458, 223-227. (doi:10. 1038/nature07672)
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
-
18
-
-
84879969127
-
Ribosome profiling provides evidence that large non-coding RNAs do not encode proteins
-
(doi:10.1016/j.cell. 2013.06.009)
-
Guttman M, Russell P, Ingolia NT, Weissman JS, Lander ES. 2013 Ribosome profiling provides evidence that large non-coding RNAs do not encode proteins. Cell 154, 240-251. (doi:10.1016/j.cell. 2013.06.009)
-
(2013)
Cell
, vol.154
, pp. 240-251
-
-
Guttman, M.1
Russell, P.2
Ingolia, N.T.3
Weissman, J.S.4
Lander, E.S.5
-
19
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
(doi:10.1016/j.cell.2011.10.002)
-
Ingolia NT, Lareau LF, Weissman JS. 2011 Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147, 789-802. (doi:10.1016/j.cell.2011.10.002)
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
20
-
-
34249021370
-
Peptides encoded by short ORFs control development and define a new eukaryotic gene family
-
(doi:10.1371/journal. pbio.0050106)
-
Galindo MI, Pueyo JI, Fouix S, Bishop SA, Couso JP. 2007 Peptides encoded by short ORFs control development and define a new eukaryotic gene family. PLoS Biol. 5, e106. (doi:10.1371/journal. pbio.0050106)
-
(2007)
PLoS Biol.
, vol.5
-
-
Galindo, M.I.1
Pueyo, J.I.2
Fouix, S.3
Bishop, S.A.4
Couso, J.P.5
-
21
-
-
84865839598
-
Long noncoding RNAs are rarely translated in two human cell lines
-
(doi:10.1101/gr.134767.111)
-
Bánfai B et al. 2012 Long noncoding RNAs are rarely translated in two human cell lines. Genome Res. 22, 1646-1657. (doi:10.1101/gr.134767.111)
-
(2012)
Genome Res.
, vol.22
, pp. 1646-1657
-
-
Bánfai, B.1
-
22
-
-
77952905505
-
Most 'dark matter' transcripts are associated with known genes
-
(doi:10. 1371/journal.pbio.1000371)
-
Van Bakel H, Nislow C, Blencowe BJ, Hughes TR. 2010 Most 'dark matter' transcripts are associated with known genes. PLoS Biol. 8, e1000371. (doi:10. 1371/journal.pbio.1000371)
-
(2010)
PLoS Biol.
, vol.8
-
-
Van Bakel, H.1
Nislow, C.2
Blencowe, B.J.3
Hughes, T.R.4
-
23
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
(doi:10.1073/pnas. 0706729105)
-
Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS. 2008 Specific expression of long noncoding RNAs in the mouse brain. Proc. Natl Acad. Sci. USA 105, 716-721. (doi:10.1073/pnas. 0706729105)
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
-
24
-
-
70149123708
-
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
-
(doi:10.1371/journal.pgen.1000617)
-
Ponjavic J, Oliver PL, Lunter G, Ponting CP. 2009 Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet. 5, e1000617. (doi:10.1371/journal.pgen.1000617)
-
(2009)
PLoS Genet.
, vol.5
-
-
Ponjavic, J.1
Oliver, P.L.2
Lunter, G.3
Ponting, C.P.4
-
25
-
-
55649099207
-
Natural antisense transcripts are coexpressed with sense mRNAs in synaptoneurosomes of adult mouse forebrain
-
(doi:10.1016/j.neures.2008.08.010)
-
Smalheiser NR, Lugli G, Torvik VI, Mise N, Ikeda R, Abe K. 2008 Natural antisense transcripts are coexpressed with sense mRNAs in synaptoneurosomes of adult mouse forebrain. Neurosci. Res. 62, 236-239. (doi:10.1016/j.neures.2008.08.010)
-
(2008)
Neurosci. Res.
, vol.62
, pp. 236-239
-
-
Smalheiser, N.R.1
Lugli, G.2
Torvik, V.I.3
Mise, N.4
Ikeda, R.5
Abe, K.6
-
26
-
-
61849113891
-
MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
-
(doi:10.1101/gr.087775.108)
-
Sunwoo H, Dinger ME, Wilusz JE, Amaral PP, Mattick JS, Spector DL. 2009 MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res. 19, 347-359. (doi:10.1101/gr.087775.108)
-
(2009)
Genome Res.
, vol.19
, pp. 347-359
-
-
Sunwoo, H.1
Dinger, M.E.2
Wilusz, J.E.3
Amaral, P.P.4
Mattick, J.S.5
Spector, D.L.6
-
27
-
-
0035842579
-
Ntab, a novel non-coding RNA abundantly expressed in rat brain
-
(doi:10.1016/S0306-4522(01)00408-0)
-
French PJ, Bliss TV, O'Connor V. 2001 Ntab, a novel non-coding RNA abundantly expressed in rat brain. Neuroscience 108, 207-215. (doi:10.1016/S0306-4522(01)00408-0)
-
(2001)
Neuroscience
, vol.108
, pp. 207-215
-
-
French, P.J.1
Bliss, T.V.2
O'Connor, V.3
-
28
-
-
84855539848
-
Targeted RNA sequencing reveals the deep complexity of the human transcriptome
-
(doi:10.1038/nbt.2024)
-
Mercer TR, Gerhardt DJ, Dinger ME, Crawford J, Trapnell C, Jeddeloh JA, Mattick JS, Rinn JL. 2012 Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Nat. Biotech. 30, 99-104. (doi:10.1038/nbt.2024)
-
(2012)
Nat. Biotech.
, vol.30
, pp. 99-104
-
-
Mercer, T.R.1
Gerhardt, D.J.2
Dinger, M.E.3
Crawford, J.4
Trapnell, C.5
Jeddeloh, J.A.6
Mattick, J.S.7
Rinn, J.L.8
-
29
-
-
84865777822
-
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
-
(doi:10.1101/gr.134445.111)
-
Tilgner H et al. 2012 Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. Genome Res. 22, 1616-1625. (doi:10.1101/gr.134445.111)
-
(2012)
Genome Res.
, vol.22
, pp. 1616-1625
-
-
Tilgner, H.1
-
30
-
-
30044434769
-
Experimental validation of the regulated expression of large numbers of noncoding RNAs from the mouse genome
-
(doi:10.1101/gr.4200206)
-
Ravasi T et al. 2006 Experimental validation of the regulated expression of large numbers of noncoding RNAs from the mouse genome. Genome Res. 16, 11-19. (doi:10.1101/gr.4200206)
-
(2006)
Genome Res.
, vol.16
, pp. 11-19
-
-
Ravasi, T.1
-
31
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
(doi:10.1038/nature09033)
-
Kim T-K et al. 2010 Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187. (doi:10.1038/nature09033)
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.-K.1
-
32
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
(doi:10.1101/gr.078378.108)
-
Dinger ME et al. 2008 Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res. 18, 1433-1445. (doi:10.1101/gr.078378.108)
-
(2008)
Genome Res.
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
-
33
-
-
75149163987
-
Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells
-
(doi:10.1261/rna.1441510)
-
Mohamed JS, Gaughwin PM, Lim B, Robson P, Lipovich L. 2010 Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells. RNA 16, 324-337. (doi:10.1261/rna.1441510)
-
(2010)
RNA
, vol.16
, pp. 324-337
-
-
Mohamed, J.S.1
Gaughwin, P.M.2
Lim, B.3
Robson, P.4
Lipovich, L.5
-
34
-
-
70350118664
-
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development
-
(doi:10.1261/rna.1705309)
-
Amaral PP, Neyt C, Wilkins SJ, Askarian-Amiri ME, Sunkin SM, Perkins AC, Mattick JS. 2009 Complex architecture and regulated expression of the Sox2ot locus during vertebrate development. RNA 15, 2013-2027. (doi:10.1261/rna.1705309)
-
(2009)
RNA
, vol.15
, pp. 2013-2027
-
-
Amaral, P.P.1
Neyt, C.2
Wilkins, S.J.3
Askarian-Amiri, M.E.4
Sunkin, S.M.5
Perkins, A.C.6
Mattick, J.S.7
-
35
-
-
84891792702
-
Two novel splice variants of SOX2OT, SOX2OT-S1, and SOX2OT-S2 are coupregulated with SOX2 and OCT4 in esophageal squamous cell carcinoma
-
(doi:10.1002/stem.1542)
-
Shahryari A, Rafiee MR, Fouani Y, Oliae NA, Samaei NM, Shafiee M, Semnani S, Vasei M, Mowla SJ. 2014 Two novel splice variants of SOX2OT, SOX2OT-S1, and SOX2OT-S2 are coupregulated with SOX2 and OCT4 in esophageal squamous cell carcinoma. Stem Cells 32, 126-134. (doi:10.1002/stem.1542)
-
(2014)
Stem Cells
, vol.32
, pp. 126-134
-
-
Shahryari, A.1
Rafiee, M.R.2
Fouani, Y.3
Oliae, N.A.4
Samaei, N.M.5
Shafiee, M.6
Semnani, S.7
Vasei, M.8
Mowla, S.J.9
-
36
-
-
33846984935
-
Transcriptional noise and the fidelity of initiation by RNA polymerase II
-
(doi:10.1038/nsmb0207-103)
-
Struhl K. 2007 Transcriptional noise and the fidelity of initiation by RNA polymerase II. Nat. Struct. Mol. Biol. 14, 103-105. (doi:10.1038/nsmb0207-103)
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 103-105
-
-
Struhl, K.1
-
37
-
-
84891757415
-
Multiple knockout mouse models reveal lincRNAs are required for life and brain development
-
(doi:10.7554/ eLife.01749)
-
Sauvageau M et al. 2013 Multiple knockout mouse models reveal lincRNAs are required for life and brain development. eLife 2, e01749. (doi:10.7554/ eLife.01749)
-
(2013)
eLife
, vol.2
-
-
Sauvageau, M.1
-
38
-
-
76649122999
-
Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation
-
(doi:10.1186/1471-2202-11-14)
-
Mercer TR, Qureshi IA, Gokhan S, Dinger ME, Li G, Mattick JS, Mehler MF. 2010 Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation. BMC Neurosci. 11, 14. (doi:10.1186/1471-2202-11-14)
-
(2010)
BMC Neurosci.
, vol.11
, pp. 14
-
-
Mercer, T.R.1
Qureshi, I.A.2
Gokhan, S.3
Dinger, M.E.4
Li, G.5
Mattick, J.S.6
Mehler, M.F.7
-
39
-
-
84864315112
-
The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult
-
(doi:10.1016/j.celrep.2012. 06.003)
-
Zhang B et al. 2012 The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult. Cell Rep. 2, 111-123. (doi:10.1016/j.celrep.2012. 06.003)
-
(2012)
Cell Rep.
, vol.2
, pp. 111-123
-
-
Zhang, B.1
-
40
-
-
79955506825
-
Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice
-
(doi:10.1083/jcb.201011110)
-
Nakagawa S, Naganuma T, Shioi G, Hirose T. 2011 Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice. J. Cell Biol. 193, 31-39. (doi:10.1083/jcb.201011110)
-
(2011)
J. Cell Biol.
, vol.193
, pp. 31-39
-
-
Nakagawa, S.1
Naganuma, T.2
Shioi, G.3
Hirose, T.4
-
41
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
(doi:10.1038/ nbt.1633)
-
Guttman M et al. 2010 Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol. 28, 503-510. (doi:10.1038/ nbt.1633)
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 503-510
-
-
Guttman, M.1
-
42
-
-
76249108851
-
Catalogues of mammalian long noncoding RNAs: Modest conservation and incompleteness
-
(doi:10.1186/gb-2009-10-11-r124)
-
Marques AC, Ponting CP. 2009 Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness. Genome Biol. 10, R124. (doi:10.1186/gb-2009-10-11-r124)
-
(2009)
Genome Biol.
, vol.10
-
-
Marques, A.C.1
Ponting, C.P.2
-
43
-
-
66349086264
-
Identifying novel constrained elements by exploiting biased substitution patterns
-
(doi:10.1093/bioinformatics/btp190)
-
Garber M, Guttman M, Clamp M, Zody MC, Friedman N, Xie X. 2009 Identifying novel constrained elements by exploiting biased substitution patterns. Bioinformatics 25, i54-i62. (doi:10.1093/bioinformatics/btp190)
-
(2009)
Bioinformatics
, vol.25
-
-
Garber, M.1
Guttman, M.2
Clamp, M.3
Zody, M.C.4
Friedman, N.5
Xie, X.6
-
44
-
-
34248162440
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
-
(doi:10.1101/gr.6036807)
-
Ponjavic J, Ponting CP, Lunter G. 2007 Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res. 17, 556-565. (doi:10.1101/gr.6036807)
-
(2007)
Genome Res.
, vol.17
, pp. 556-565
-
-
Ponjavic, J.1
Ponting, C.P.2
Lunter, G.3
-
45
-
-
29444457713
-
Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function
-
(doi:10.1016/j.tig.2005.10.003)
-
Pang KC, Frith MC, Mattick JS. 2006 Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends Genet. 22, 1-5. (doi:10.1016/j.tig.2005.10.003)
-
(2006)
Trends Genet.
, vol.22
, pp. 1-5
-
-
Pang, K.C.1
Frith, M.C.2
Mattick, J.S.3
-
46
-
-
84862195751
-
Structural architecture of the human long noncoding RNA, steroid receptor RNA activator
-
(doi:10.1093/nar/ gks071)
-
Novikova IV, Hennelly SP, Sanbonmatsu KY. 2012 Structural architecture of the human long noncoding RNA, steroid receptor RNA activator. Nucleic Acids Res. 40, 5034-5051. (doi:10.1093/nar/ gks071)
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5034-5051
-
-
Novikova, I.V.1
Hennelly, S.P.2
Sanbonmatsu, K.Y.3
-
47
-
-
84868358486
-
Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM
-
12.11.1-12.11.15, (doi:10.1002/0471250953. bi1211s39)
-
Havgaard J, Kaur S, Gorodkin J. 2012 Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM. Curr. Protoc. Bioinform. 39, 12.11.1-12.11.15. (doi:10.1002/0471250953. bi1211s39)
-
(2012)
Curr. Protoc. Bioinform.
, vol.39
-
-
Havgaard, J.1
Kaur, S.2
Gorodkin, J.3
-
48
-
-
33745590704
-
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
-
(doi:10.1101/gr. 5226606)
-
Torarinsson E, Sawera M, Havgaard JH, Fredholm M, Gorodkin J. 2006 Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure. Genome Res. 16, 885-889. (doi:10.1101/gr. 5226606)
-
(2006)
Genome Res.
, vol.16
, pp. 885-889
-
-
Torarinsson, E.1
Sawera, M.2
Havgaard, J.H.3
Fredholm, M.4
Gorodkin, J.5
-
49
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
(doi:10.1016/j.cell. 2011.11.055)
-
Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP. 2011 Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147, 1537-1550. (doi:10.1016/j.cell. 2011.11.055)
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
50
-
-
27944464131
-
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
-
(doi:10.1038/ nbt1144)
-
Washietl S, Hofacker IL, Lukasser M, Hüttenhofer A, Stadler PF. 2005 Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Nat. Biotechnol. 23, 1383-1390. (doi:10.1038/ nbt1144)
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1383-1390
-
-
Washietl, S.1
Hofacker, I.L.2
Lukasser, M.3
Hüttenhofer, A.4
Stadler, P.F.5
-
51
-
-
84888992963
-
Not so pseudo anymore: Pseudogenes as therapeutic targets
-
(doi:10.2217/ pgs.13.172)
-
Roberts TC, Morris KV. 2013 Not so pseudo anymore: pseudogenes as therapeutic targets. Pharmacogenomics 14, 2023-2034. (doi:10.2217/ pgs.13.172)
-
(2013)
Pharmacogenomics
, vol.14
, pp. 2023-2034
-
-
Roberts, T.C.1
Morris, K.V.2
-
52
-
-
70349741137
-
Assessing the genomic evidence for conserved transcribed pseudogenes under selection
-
(doi:10.1186/1471-2164-10-435)
-
Khachane AN, Harrison PM. 2009 Assessing the genomic evidence for conserved transcribed pseudogenes under selection. BMC Genomics 10, 435. (doi:10.1186/1471-2164-10-435)
-
(2009)
BMC Genomics
, vol.10
, pp. 435
-
-
Khachane, A.N.1
Harrison, P.M.2
-
53
-
-
17744388101
-
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence
-
(doi:10.1101/gr.174901)
-
Nesterova TB et al. 2001 Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence. Genome Res. 11, 833-849. (doi:10.1101/gr.174901)
-
(2001)
Genome Res.
, vol.11
, pp. 833-849
-
-
Nesterova, T.B.1
-
54
-
-
0035336255
-
Allelic IGF2R repression does not correlate with expression of antisense RNA in human extraembryonic tissues
-
(doi:10.1006/geno. 2001.6522)
-
Oudejans CB, Westerman B, Wouters D, Gooyer S, Leegwater PA, van Wijk IJ, Sleutels F. 2001 Allelic IGF2R repression does not correlate with expression of antisense RNA in human extraembryonic tissues. Genomics 73, 331-337. (doi:10.1006/geno. 2001.6522)
-
(2001)
Genomics
, vol.73
, pp. 331-337
-
-
Oudejans, C.B.1
Westerman, B.2
Wouters, D.3
Gooyer, S.4
Leegwater, P.A.5
van Wijk, I.J.6
Sleutels, F.7
-
55
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humans
-
(doi:10.1038/ nature05113)
-
Pollard KS et al. 2006 An RNA gene expressed during cortical development evolved rapidly in humans. Nature 443, 167-172. (doi:10.1038/ nature05113)
-
(2006)
Nature
, vol.443
, pp. 167-172
-
-
Pollard, K.S.1
-
56
-
-
19444377759
-
Transcriptional interference: A crash course
-
(doi:10.1016/j.tig.2005.04.009)
-
Shearwin KE, Callen BP, Egan JB. 2005 Transcriptional interference: a crash course. Trends Genet. 21, 339-345. (doi:10.1016/j.tig.2005.04.009)
-
(2005)
Trends Genet.
, vol.21
, pp. 339-345
-
-
Shearwin, K.E.1
Callen, B.P.2
Egan, J.B.3
-
57
-
-
0019994521
-
Promoter occlusion: Transcription through a promoter may inhibit its activity
-
(doi:10.1016/0092-8674(82)90456-1)
-
Adhya S, Gottesman M. 1982 Promoter occlusion: transcription through a promoter may inhibit its activity. Cell 29, 939-944. (doi:10.1016/0092-8674(82)90456-1)
-
(1982)
Cell
, vol.29
, pp. 939-944
-
-
Adhya, S.1
Gottesman, M.2
-
58
-
-
2942670418
-
Gene regulation: A reason for reading nonsense
-
(doi:10.1038/429510a)
-
Schmitt S, Paro R. 2004 Gene regulation: a reason for reading nonsense. Nature 429, 510-511. (doi:10.1038/429510a)
-
(2004)
Nature
, vol.429
, pp. 510-511
-
-
Schmitt, S.1
Paro, R.2
-
59
-
-
0033853988
-
Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus
-
(doi:10.1016/S1097-2765(00)80432-3)
-
Gribnau J, Diderich K, Pruzina S, Calzolari R, Fraser P. 2000 Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus. Mol. Cell 5, 377-386. (doi:10.1016/S1097-2765(00)80432-3)
-
(2000)
Mol. Cell
, vol.5
, pp. 377-386
-
-
Gribnau, J.1
Diderich, K.2
Pruzina, S.3
Calzolari, R.4
Fraser, P.5
-
60
-
-
33845452031
-
Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference
-
(doi:10.1016/j.cell.2006.10.039)
-
Petruk S, Sedkov Y, Riley KM, Hodgson J, Schweisguth F, Hirose S, Jaynes JB, Brock HW, Mazo A. 2006 Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference. Cell 127, 1209-1221. (doi:10.1016/j.cell.2006.10.039)
-
(2006)
Cell
, vol.127
, pp. 1209-1221
-
-
Petruk, S.1
Sedkov, Y.2
Riley, K.M.3
Hodgson, J.4
Schweisguth, F.5
Hirose, S.6
Jaynes, J.B.7
Brock, H.W.8
Mazo, A.9
-
61
-
-
34250743796
-
Transcriptional interferences in cis natural antisense transcripts of humans and mice
-
(doi:10.1534/genetics.106.069484)
-
Osato N, Suzuki Y, Ikeo K, Gojobori T. 2007 Transcriptional interferences in cis natural antisense transcripts of humans and mice. Genetics 176, 1299-1306. (doi:10.1534/genetics.106.069484)
-
(2007)
Genetics
, vol.176
, pp. 1299-1306
-
-
Osato, N.1
Suzuki, Y.2
Ikeo, K.3
Gojobori, T.4
-
62
-
-
20444490380
-
Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas
-
(doi:10.1093/hmg/ddi156)
-
Yan M-D, Hong C-C, Lai G-M, Cheng A-L, Lin Y-W, Chuang S-E. 2005 Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas. Hum. Mol. Genet. 14, 1465-1474. (doi:10.1093/hmg/ddi156)
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 1465-1474
-
-
Yan, M.-D.1
Hong, C.-C.2
Lai, G.-M.3
Cheng, A.-L.4
Lin, Y.-W.5
Chuang, S.-E.6
-
63
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
(doi:10. 1016/j.molcel.2010.08.011)
-
Tripathi V et al. 2010 The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol. Cell 39, 925-938. (doi:10. 1016/j.molcel.2010.08.011)
-
(2010)
Mol. Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
-
64
-
-
62549117314
-
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
-
(doi:10.1016/j. molcel.2009.01.026)
-
Clemson CM, Hutchinson JN, Sara SA, Ensminger AW, Fox AH, Chess A, Lawrence JB. 2009 An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol. Cell 33, 717-726. (doi:10.1016/j. molcel.2009.01.026)
-
(2009)
Mol. Cell
, vol.33
, pp. 717-726
-
-
Clemson, C.M.1
Hutchinson, J.N.2
Sara, S.A.3
Ensminger, A.W.4
Fox, A.H.5
Chess, A.6
Lawrence, J.B.7
-
65
-
-
33749534161
-
Telomeres and telomerase: The path from maize, Tetrahymena and yeast to human cancer and aging
-
(doi:10.1038/ nm1006-1133)
-
Blackburn EH, Greider CW, Szostak JW. 2006 Telomeres and telomerase: the path from maize, Tetrahymena and yeast to human cancer and aging. Nat. Med. 12, 1133-1138. (doi:10.1038/ nm1006-1133)
-
(2006)
Nat. Med.
, vol.12
, pp. 1133-1138
-
-
Blackburn, E.H.1
Greider, C.W.2
Szostak, J.W.3
-
66
-
-
46749083733
-
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase
-
(doi:10.1038/nm1784)
-
Faghihi MA et al. 2008 Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat. Med. 14, 723-730. (doi:10.1038/nm1784)
-
(2008)
Nat. Med.
, vol.14
, pp. 723-730
-
-
Faghihi, M.A.1
-
67
-
-
77952698932
-
Evidence for natural antisense transcript-mediated inhibition of microRNA function
-
(doi:10. 1186/gb-2010-11-5-r56)
-
Faghihi MA, Zhang M, Huang J, Modarresi F, Van der Brug MP, Nalls MA, Cookson MR, St-Laurent 3rd G, Wahlestedt C. 2010 Evidence for natural antisense transcript-mediated inhibition of microRNA function. Genome Biol. 11, R56. (doi:10. 1186/gb-2010-11-5-r56)
-
(2010)
Genome Biol.
, vol.11
-
-
Faghihi, M.A.1
Zhang, M.2
Huang, J.3
Modarresi, F.4
Van der Brug, M.P.5
Nalls, M.A.6
Cookson, M.R.7
St-Laurent III, G.8
Wahlestedt, C.9
-
68
-
-
84872135457
-
Control of somatic tissue differentiation by the long non-coding RNA TINCR
-
(doi:10.1038/nature11661)
-
Kretz M et al. 2013 Control of somatic tissue differentiation by the long non-coding RNA TINCR. Nature 493, 231-235. (doi:10.1038/nature11661)
-
(2013)
Nature
, vol.493
, pp. 231-235
-
-
Kretz, M.1
-
69
-
-
69349092918
-
Natural antisense transcript of natriuretic peptide precursor A (NPPA): Structural organization and modulation of NPPA expression
-
(doi:10.1186/ 1471-2199-10-81)
-
Annilo T, Kepp K, Laan M. 2009 Natural antisense transcript of natriuretic peptide precursor A (NPPA): structural organization and modulation of NPPA expression. BMC Mol. Biol. 10, 81. (doi:10.1186/ 1471-2199-10-81)
-
(2009)
BMC Mol. Biol.
, vol.10
, pp. 81
-
-
Annilo, T.1
Kepp, K.2
Laan, M.3
-
70
-
-
77951638287
-
Noncoding RNA gas5 is a growth arrest-and starvation-associated repressor of the glucocorticoid receptor
-
(doi:10.1126/scisignal. 2000568)
-
Kino T, Hurt DE, Ichijo T, Nader N, Chrousos GP. 2010 Noncoding RNA gas5 is a growth arrest-and starvation-associated repressor of the glucocorticoid receptor. Sci. Signal. 3, ra8. (doi:10.1126/scisignal. 2000568)
-
(2010)
Sci. Signal.
, vol.3
-
-
Kino, T.1
Hurt, D.E.2
Ichijo, T.3
Nader, N.4
Chrousos, G.P.5
-
71
-
-
33745599586
-
Identification and characterization of two novel classes of small RNAs in the mouse germline: Retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
-
(doi:10.1101/gad.1425706)
-
Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H. 2006 Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. Genes Dev. 20, 1732-1743. (doi:10.1101/gad.1425706)
-
(2006)
Genes Dev.
, vol.20
, pp. 1732-1743
-
-
Watanabe, T.1
Takeda, A.2
Tsukiyama, T.3
Mise, K.4
Okuno, T.5
Sasaki, H.6
Minami, N.7
Imai, H.8
-
72
-
-
84868152631
-
Long noncoding RNAs with snoRNA ends
-
(doi:10.1016/j.molcel.2012.07.033)
-
Yin Q-F, Yang L, Zhang Y, Xiang J-F, Wu Y-W, Carmichael GG, Chen L-L. 2012 Long noncoding RNAs with snoRNA ends. Mol. Cell 48, 219-230. (doi:10.1016/j.molcel.2012.07.033)
-
(2012)
Mol. Cell
, vol.48
, pp. 219-230
-
-
Yin, Q.-F.1
Yang, L.2
Zhang, Y.3
Xiang, J.-F.4
Wu, Y.-W.5
Carmichael, G.G.6
Chen, L.-L.7
-
73
-
-
84856283173
-
miR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triplenegative breast cancer
-
(doi:10. 1186/1476-4598-11-5)
-
Augoff K, McCue B, Plow EF, Sossey-Alaoui K. 2012 miR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triplenegative breast cancer. Mol. Cancer 11, 5. (doi:10. 1186/1476-4598-11-5)
-
(2012)
Mol. Cancer
, vol.11
, pp. 5
-
-
Augoff, K.1
McCue, B.2
Plow, E.F.3
Sossey-Alaoui, K.4
-
74
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
(doi:10. 1038/nature09144)
-
Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP. 2010 A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 465, 1033-1038. (doi:10. 1038/nature09144)
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
75
-
-
79961170994
-
A ceRNA hypothesis: The Rosetta Stone of a hidden RNA language?
-
(doi:10. 1016/j.cell.2011.07.014)
-
Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. 2011 A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146, 353-358. (doi:10. 1016/j.cell.2011.07.014)
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
76
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
(doi:10.1016/ j.cell.2011.09.028)
-
Cesana M, Cacchiarelli D, Legnini I, Santini T, Sthandier O, Chinappi M, Tramontano A, Bozzoni I. 2011 A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 147, 358-369. (doi:10.1016/ j.cell.2011.09.028)
-
(2011)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
Santini, T.4
Sthandier, O.5
Chinappi, M.6
Tramontano, A.7
Bozzoni, I.8
-
77
-
-
24644481406
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
-
(doi:10.1126/science.1115901)
-
Willingham AT, Orth AP, Batalov S, Peters EC, Wen BG, Aza-Blanc P, Hogenesch JB, Schultz PG. 2005 A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. Science 309, 1570-1573. (doi:10.1126/science.1115901)
-
(2005)
Science
, vol.309
, pp. 1570-1573
-
-
Willingham, A.T.1
Orth, A.P.2
Batalov, S.3
Peters, E.C.4
Wen, B.G.5
Aza-Blanc, P.6
Hogenesch, J.B.7
Schultz, P.G.8
-
78
-
-
0032076048
-
RNA and the epigenetic regulation of X chromosome inactivation
-
(doi:10.1016/S0092-8674(00) 81155-1)
-
Panning B, Jaenisch R. 1998 RNA and the epigenetic regulation of X chromosome inactivation. Cell 93, 305-308. (doi:10.1016/S0092-8674(00) 81155-1)
-
(1998)
Cell
, vol.93
, pp. 305-308
-
-
Panning, B.1
Jaenisch, R.2
-
79
-
-
33344461310
-
A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization
-
(doi:10.1016/j.molcel.2006.01.028)
-
Sun BK, Deaton AM, Lee JT. 2006 A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization. Mol. Cell 21, 617-628. (doi:10.1016/j.molcel.2006.01.028)
-
(2006)
Mol. Cell
, vol.21
, pp. 617-628
-
-
Sun, B.K.1
Deaton, A.M.2
Lee, J.T.3
-
80
-
-
0036718498
-
Antisense RNA in imprinting: Spreading silence through Air
-
(doi:10.1016/S0168-9525 (02)02749-X)
-
Rougeulle C, Heard E. 2002 Antisense RNA in imprinting: spreading silence through Air. Trends Genet. 18, 434-437. (doi:10.1016/S0168-9525 (02)02749-X)
-
(2002)
Trends Genet.
, vol.18
, pp. 434-437
-
-
Rougeulle, C.1
Heard, E.2
-
81
-
-
4444288436
-
An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region
-
(doi:10.1128/MCB.24.18.7855-7862.2004)
-
Thakur N, Tiwari VK, Thomassin H, Pandey RR, Kanduri M, Göndör A, Grange T, Ohlsson R, Kanduri C. 2004 An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region. Mol. Cell. Biol. 24, 7855-7862. (doi:10.1128/MCB.24.18.7855-7862.2004)
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 7855-7862
-
-
Thakur, N.1
Tiwari, V.K.2
Thomassin, H.3
Pandey, R.R.4
Kanduri, M.5
Göndör, A.6
Grange, T.7
Ohlsson, R.8
Kanduri, C.9
-
82
-
-
0037075032
-
The noncoding Air RNA is required for silencing autosomal imprinted genes
-
(doi:10. 1038/415810a)
-
Sleutels F, Zwart R, Barlow DP. 2002 The noncoding Air RNA is required for silencing autosomal imprinted genes. Nature 415, 810-813. (doi:10. 1038/415810a)
-
(2002)
Nature
, vol.415
, pp. 810-813
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
83
-
-
78349252731
-
Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
-
(doi:10.1101/gad.1967810)
-
Yao H, Brick K, Evrard Y, Xiao T, Camerini-Otero RD, Felsenfeld G. 2010 Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev. 24, 2543-2555. (doi:10.1101/gad.1967810)
-
(2010)
Genes Dev.
, vol.24
, pp. 2543-2555
-
-
Yao, H.1
Brick, K.2
Evrard, Y.3
Xiao, T.4
Camerini-Otero, R.D.5
Felsenfeld, G.6
-
84
-
-
81055140863
-
ncRNA-and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs
-
(doi:10.1016/j.cell. 2011.08.054)
-
Yang L, Lin C, Liu W, Zhang J, Ohgi KA, Grinstein JD, Dorrestein PC, Rosenfeld MG. 2011 ncRNA-and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs. Cell 147, 773-788. (doi:10.1016/j.cell. 2011.08.054)
-
(2011)
Cell
, vol.147
, pp. 773-788
-
-
Yang, L.1
Lin, C.2
Liu, W.3
Zhang, J.4
Ohgi, K.A.5
Grinstein, J.D.6
Dorrestein, P.C.7
Rosenfeld, M.G.8
-
85
-
-
80052869283
-
lincRNAs act in the circuitry controlling pluripotency and differentiation
-
(doi:10.1038/nature10398)
-
Guttman M et al. 2011 lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477, 295-300. (doi:10.1038/nature10398)
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
-
86
-
-
15744387853
-
The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina
-
(doi:10.1016/j.cub.2005. 02.027)
-
Young TL, Matsuda T, Cepko CL. 2005 The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. Curr. Biol. 15, 501-512. (doi:10.1016/j.cub.2005. 02.027)
-
(2005)
Curr. Biol.
, vol.15
, pp. 501-512
-
-
Young, T.L.1
Matsuda, T.2
Cepko, C.L.3
-
87
-
-
2642531973
-
Epigenetics in human disease and prospects for epigenetic therapy
-
(doi:10. 1038/nature02625)
-
Egger G, Liang G, Aparicio A, Jones PA. 2004 Epigenetics in human disease and prospects for epigenetic therapy. Nature 429, 457-463. (doi:10. 1038/nature02625)
-
(2004)
Nature
, vol.429
, pp. 457-463
-
-
Egger, G.1
Liang, G.2
Aparicio, A.3
Jones, P.A.4
-
88
-
-
64349095390
-
An operational definition of epigenetics
-
(doi:10.1101/gad.1787609)
-
Berger SL, Kouzarides T, Shiekhattar R, Shilatifard A. 2009 An operational definition of epigenetics. Genes Dev. 23, 781-783. (doi:10.1101/gad.1787609)
-
(2009)
Genes Dev.
, vol.23
, pp. 781-783
-
-
Berger, S.L.1
Kouzarides, T.2
Shiekhattar, R.3
Shilatifard, A.4
-
89
-
-
0034610814
-
The language of covalent histone modifications
-
(doi:10. 1038/47412)
-
Strahl BD, Allis CD. 2000 The language of covalent histone modifications. Nature 403, 41-45. (doi:10. 1038/47412)
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
90
-
-
34249026300
-
Highresolution profiling of histone methylations in the human genome
-
(doi:10.1016/j. cell.2007.05.009)
-
Barski A, Cuddapah S, Cui K, Roh T-Y, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. 2007 Highresolution profiling of histone methylations in the human genome. Cell 129, 823-837. (doi:10.1016/j. cell.2007.05.009)
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
91
-
-
33847076849
-
Chromatin modifications and their function
-
(doi:10.1016/j. cell.2007.02.005)
-
Kouzarides T. 2007 Chromatin modifications and their function. Cell 128, 693-705. (doi:10.1016/j. cell.2007.02.005)
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
92
-
-
73049098277
-
Predicting nucleosome positions on the DNA: Combining intrinsic sequence preferences and remodeler activities
-
(doi:10.1093/nar/gkp610)
-
Teif VB, Rippe K. 2009 Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities. Nucleic Acids Res. 37, 5641-5655. (doi:10.1093/nar/gkp610)
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5641-5655
-
-
Teif, V.B.1
Rippe, K.2
-
93
-
-
36049020719
-
Noncoding RNAs: Couplers of analog and digital information in nervous system function?
-
(doi:10.1016/j.tins.2007.10.002)
-
St Laurent 3rd G, Wahlestedt C. 2007 Noncoding RNAs: couplers of analog and digital information in nervous system function? Trends Neurosci. 30, 612-621. (doi:10.1016/j.tins.2007.10.002)
-
(2007)
Trends Neurosci.
, vol.30
, pp. 612-621
-
-
St Laurent III, G.1
Wahlestedt, C.2
-
94
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
(doi:10.1038/nature10887)
-
Guttman M, Rinn JL. 2012 Modular regulatory principles of large non-coding RNAs. Nature 482, 339-346. (doi:10.1038/nature10887)
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
95
-
-
84891923027
-
Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs
-
Roberts TC, Morris KV, Weinberg MS. 2013 Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs. Epigenetics 9, 13-20.
-
(2013)
Epigenetics
, vol.9
, pp. 13-20
-
-
Roberts, T.C.1
Morris, K.V.2
Weinberg, M.S.3
-
96
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
(doi:10.1016/j.molcel.2011.08.018)
-
Wang KC, Chang HY. 2011 Molecular mechanisms of long noncoding RNAs. Mol. Cell 43, 904-914. (doi:10.1016/j.molcel.2011.08.018)
-
(2011)
Mol. Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
97
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatinmodifying complexes and affect gene expression
-
(doi:10.1073/pnas.0904715106)
-
Khalil AM et al. 2009 Many human large intergenic noncoding RNAs associate with chromatinmodifying complexes and affect gene expression. Proc. Natl Acad. Sci. USA 106, 11 667-11 672. (doi:10.1073/pnas.0904715106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
-
98
-
-
78650253763
-
Genome-wide identification of polycomb-associated RNAs by RIP-seq
-
(doi:10.1016/j.molcel.2010.12.011)
-
Zhao J et al. 2010 Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol. Cell 40, 939-953. (doi:10.1016/j.molcel.2010.12.011)
-
(2010)
Mol. Cell
, vol.40
, pp. 939-953
-
-
Zhao, J.1
-
99
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
(doi:10. 1038/nature09819)
-
Wang KC et al. 2011 A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472, 120-124. (doi:10. 1038/nature09819)
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
-
100
-
-
0036479009
-
Chromosomal silencing and localization are mediated by different domains of Xist RNA
-
(doi:10.1038/ng820)
-
Wutz A, Rasmussen TP, Jaenisch R. 2002 Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nat. Genet. 30, 167-174. (doi:10.1038/ng820)
-
(2002)
Nat. Genet.
, vol.30
, pp. 167-174
-
-
Wutz, A.1
Rasmussen, T.P.2
Jaenisch, R.3
-
101
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
(doi:10. 1016/j.cell.2007.05.022)
-
Rinn JL et al. 2007 Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129, 1311-1323. (doi:10. 1016/j.cell.2007.05.022)
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
-
102
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
(doi:10.1038/ nature08975)
-
Gupta RA et al. 2010 Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 464, 1071-1076. (doi:10.1038/ nature08975)
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
-
103
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
(doi:10.1016/j.molcel.2011. 08.027)
-
Chu C, Qu K, Zhong FL, Artandi SE, Chang HY. 2011 Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol. Cell 44, 667-678. (doi:10.1016/j.molcel.2011. 08.027)
-
(2011)
Mol. Cell
, vol.44
, pp. 667-678
-
-
Chu, C.1
Qu, K.2
Zhong, F.L.3
Artandi, S.E.4
Chang, H.Y.5
-
104
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
(doi:10.1126/science.1192002)
-
Tsai M-C, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY. 2010 Long noncoding RNA as modular scaffold of histone modification complexes. Science 329, 689-693. (doi:10.1126/science.1192002)
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.-C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
105
-
-
84856492490
-
Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors
-
(doi:10.1038/emboj.2011.459)
-
Ng S-Y, Johnson R, Stanton LW. 2012 Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors. EMBO J. 31, 522-533. (doi:10.1038/emboj.2011.459)
-
(2012)
EMBO J.
, vol.31
, pp. 522-533
-
-
Ng, S.-Y.1
Johnson, R.2
Stanton, L.W.3
-
106
-
-
79956010263
-
Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network
-
(doi:10.1093/nar/gkq1348)
-
Liao Q et al. 2011 Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. Nucleic Acids Res. 39, 3864-3878. (doi:10.1093/nar/gkq1348)
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3864-3878
-
-
Liao, Q.1
-
107
-
-
33751548288
-
Diversity of microRNAs in human and chimpanzee brain
-
(doi:10.1038/ng1914)
-
Berezikov E, Thuemmler F, van Laake LW, Kondova I, Bontrop R, Cuppen E, Plasterk RHA. 2006 Diversity of microRNAs in human and chimpanzee brain. Nat. Genet. 38, 1375-1377. (doi:10.1038/ng1914)
-
(2006)
Nat. Genet.
, vol.38
, pp. 1375-1377
-
-
Berezikov, E.1
Thuemmler, F.2
van Laake, L.W.3
Kondova, I.4
Bontrop, R.5
Cuppen, E.6
Plasterk, RHA.7
-
108
-
-
84886255734
-
Epigenetics and ncRNAs in brain function and disease: Mechanisms and prospects for therapy
-
(doi:10.1007/ s13311-013-0212-7)
-
Varela MA, Roberts TC, Wood MJA. 2013 Epigenetics and ncRNAs in brain function and disease: mechanisms and prospects for therapy. Neurotherapeutics 10, 621-631. (doi:10.1007/ s13311-013-0212-7)
-
(2013)
Neurotherapeutics
, vol.10
, pp. 621-631
-
-
Varela, M.A.1
Roberts, T.C.2
Wood, M.J.A.3
-
109
-
-
80052536392
-
RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders
-
(doi:10.1371/journal.pone.0023356)
-
Lin M, Pedrosa E, Shah A, Hrabovsky A, Maqbool S, Zheng D, Lachman HM. 2011 RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders. PLoS ONE 6, e23356. (doi:10.1371/journal.pone.0023356)
-
(2011)
PLoS ONE
, vol.6
-
-
Lin, M.1
Pedrosa, E.2
Shah, A.3
Hrabovsky, A.4
Maqbool, S.5
Zheng, D.6
Lachman, H.M.7
-
110
-
-
84900791270
-
Developmental changes in the transcriptome of human cerebral cortex tissue: Long noncoding RNA transcripts
-
(doi:10.1093/cercor/bhs414)
-
Lipovich L et al. 2013 Developmental changes in the transcriptome of human cerebral cortex tissue: long noncoding RNA transcripts. Cereb. Cortex 24, 1451-1459. (doi:10.1093/cercor/bhs414)
-
(2013)
Cereb. Cortex
, vol.24
, pp. 1451-1459
-
-
Lipovich, L.1
-
111
-
-
45449092537
-
Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation
-
(doi:10.1016/j.bbrc.2008.05.127)
-
Tochitani S, Hayashizaki Y. 2008 Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation. Biochem. Biophys. Res. Commun. 372, 691-696. (doi:10.1016/j.bbrc.2008.05.127)
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.372
, pp. 691-696
-
-
Tochitani, S.1
Hayashizaki, Y.2
-
112
-
-
0035218812
-
Vertebrate photoreceptors
-
(doi:10.1016/ S1350-9462(00)00014-8)
-
Ebrey T, Koutalos Y. 2001 Vertebrate photoreceptors. Prog. Retin. Eye Res. 20, 49-94. (doi:10.1016/ S1350-9462(00)00014-8)
-
(2001)
Prog. Retin. Eye Res.
, vol.20
, pp. 49-94
-
-
Ebrey, T.1
Koutalos, Y.2
-
113
-
-
0028934541
-
REST: A mammalian silencer protein that restricts sodium channel gene expression to neurons
-
(doi:10. 1016/0092-8674(95)90298-8)
-
Chong JA et al. 1995 REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons. Cell 80, 949-957. (doi:10. 1016/0092-8674(95)90298-8)
-
(1995)
Cell
, vol.80
, pp. 949-957
-
-
Chong, J.A.1
-
114
-
-
58149103424
-
Regulation of neural macroRNAs by the transcriptional repressor REST
-
(doi:10.1261/rna.1127009)
-
Johnson R, Teh CH-L, Jia H, Vanisri RR, Pandey T, Lu Z-H, Buckley NJ, Stanton LW, Lipovich L. 2009 Regulation of neural macroRNAs by the transcriptional repressor REST. RNA 15, 85-96. (doi:10.1261/rna.1127009)
-
(2009)
RNA
, vol.15
, pp. 85-96
-
-
Johnson, R.1
Teh, C.H.-L.2
Jia, H.3
Vanisri, R.R.4
Pandey, T.5
Lu, Z.-H.6
Buckley, N.J.7
Stanton, L.W.8
Lipovich, L.9
-
115
-
-
77952940922
-
The human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease
-
(doi:10.1152/ physiolgenomics.00019.2010)
-
Johnson R, Richter N, Jauch R, Gaughwin PM, Zuccato C, Cattaneo E, Stanton LW. 2010 The human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease. Physiol. Genomics 41, 269-274. (doi:10.1152/ physiolgenomics.00019.2010)
-
(2010)
Physiol. Genomics
, vol.41
, pp. 269-274
-
-
Johnson, R.1
Richter, N.2
Jauch, R.3
Gaughwin, P.M.4
Zuccato, C.5
Cattaneo, E.6
Stanton, L.W.7
-
116
-
-
0033578299
-
CoREST: A functional corepressor required for regulation of neural-specific gene expression
-
(doi:10. 1073/pnas.96.17.9873)
-
Andrés ME, Burger C, Peral-Rubio MJ, Battaglioli E, Anderson ME, Grimes J, Dallman J, Ballas N, Mandel G. 1999 CoREST: a functional corepressor required for regulation of neural-specific gene expression. Proc. Natl Acad. Sci. USA 96, 9873-9878. (doi:10. 1073/pnas.96.17.9873)
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 9873-9878
-
-
Andrés, M.E.1
Burger, C.2
Peral-Rubio, M.J.3
Battaglioli, E.4
Anderson, M.E.5
Grimes, J.6
Dallman, J.7
Ballas, N.8
Mandel, G.9
-
117
-
-
84871060911
-
Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing
-
(doi:10.1126/ science.1228110)
-
Latos PA et al. 2012 Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing. Science 338, 1469-1472. (doi:10.1126/ science.1228110)
-
(2012)
Science
, vol.338
, pp. 1469-1472
-
-
Latos, P.A.1
-
118
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
(doi:10.1126/science.1163802)
-
Nagano T, Mitchell JA, Sanz LA, Pauler FM, Ferguson-Smith AC, Feil R, Fraser P. 2008 The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 322, 1717-1720. (doi:10.1126/science.1163802)
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
Ferguson-Smith, A.C.5
Feil, R.6
Fraser, P.7
-
119
-
-
24144456545
-
Neuron-specific relaxation of Igf2r imprinting is associated with neuron-specific histone modifications and lack of its antisense transcript Air
-
(doi:10.1093/hmg/ddi255)
-
Yamasaki Y et al. 2005 Neuron-specific relaxation of Igf2r imprinting is associated with neuron-specific histone modifications and lack of its antisense transcript Air. Hum. Mol. Genet. 14, 2511-2520. (doi:10.1093/hmg/ddi255)
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 2511-2520
-
-
Yamasaki, Y.1
-
120
-
-
0030698872
-
Interneuron migration from basal forebrain to neocortex: Dependence on Dlx genes
-
(doi:10.1126/science.278.5337.474)
-
Anderson SA, Eisenstat DD, Shi L, Rubenstein JL. 1997 Interneuron migration from basal forebrain to neocortex: dependence on Dlx genes. Science 278, 474-476. (doi:10.1126/science.278.5337.474)
-
(1997)
Science
, vol.278
, pp. 474-476
-
-
Anderson, S.A.1
Eisenstat, D.D.2
Shi, L.3
Rubenstein, J.L.4
-
121
-
-
0030841362
-
Mutations of the homeobox genes Dlx-1 and Dlx-2 disrupt the striatal subventricular zone and differentiation of late born striatal neurons
-
(doi:10.1016/S0896-6273(00)80345-1)
-
Anderson SA, Qiu M, Bulfone A, Eisenstat DD, Meneses J, Pedersen R, Rubenstein JL. 1997 Mutations of the homeobox genes Dlx-1 and Dlx-2 disrupt the striatal subventricular zone and differentiation of late born striatal neurons. Neuron 19, 27-37. (doi:10.1016/S0896-6273(00)80345-1)
-
(1997)
Neuron
, vol.19
, pp. 27-37
-
-
Anderson, S.A.1
Qiu, M.2
Bulfone, A.3
Eisenstat, D.D.4
Meneses, J.5
Pedersen, R.6
Rubenstein, J.L.7
-
122
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
(doi:10.1101/gad.1416106)
-
Feng J, Bi C, Clark BS, Mady R, Shah P, Kohtz JD. 2006 The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev. 20, 1470-1484. (doi:10.1101/gad.1416106)
-
(2006)
Genes Dev.
, vol.20
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
Kohtz, J.D.6
-
123
-
-
68149182666
-
Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry
-
(doi:10.1038/nn.2371)
-
Bond AM, Vangompel MJW, Sametsky EA, Clark MF, Savage JC, Disterhoft JF, Kohtz JD. 2009 Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry. Nat. Neurosci. 12, 1020-1027. (doi:10.1038/nn.2371)
-
(2009)
Nat. Neurosci.
, vol.12
, pp. 1020-1027
-
-
Bond, A.M.1
Vangompel, M.J.W.2
Sametsky, E.A.3
Clark, M.F.4
Savage, J.C.5
Disterhoft, J.F.6
Kohtz, J.D.7
-
124
-
-
77956882723
-
A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
-
(doi:10.1038/emboj.2010.199)
-
Bernard D et al. 2010 A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. EMBO J. 29, 3082-3093. (doi:10.1038/emboj.2010.199)
-
(2010)
EMBO J.
, vol.29
, pp. 3082-3093
-
-
Bernard, D.1
-
125
-
-
77956873295
-
Disease-associated mutations that alter the RNA structural ensemble
-
(doi:10.1371/journal.pgen.1001074)
-
Halvorsen M, Martin JS, Broadaway S, Laederach A. 2010 Disease-associated mutations that alter the RNA structural ensemble. PLoS Genet. 6, e1001074. (doi:10.1371/journal.pgen.1001074)
-
(2010)
PLoS Genet.
, vol.6
-
-
Halvorsen, M.1
Martin, J.S.2
Broadaway, S.3
Laederach, A.4
-
126
-
-
67249117049
-
Potential etiologic and functional implications of genomewide association loci for human diseases and traits
-
(doi:10. 1073/pnas.0903103106)
-
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA. 2009 Potential etiologic and functional implications of genomewide association loci for human diseases and traits. Proc. Natl Acad. Sci. USA 106, 9362-9367. (doi:10. 1073/pnas.0903103106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
Manolio, T.A.7
-
127
-
-
0034640938
-
The SCA8 transcript is an antisense RNA to a brain-specific transcript encoding a novel actin-binding protein (KLHL1)
-
(doi:10.1093/hmg/9.10.1543)
-
Nemes JP, Benzow KA, Moseley ML, Ranum LP, Koob MD. 2000 The SCA8 transcript is an antisense RNA to a brain-specific transcript encoding a novel actin-binding protein (KLHL1). Hum. Mol. Genet. 9, 1543-1551. (doi:10.1093/hmg/9.10.1543)
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 1543-1551
-
-
Nemes, J.P.1
Benzow, K.A.2
Moseley, M.L.3
Ranum, L.P.4
Koob, M.D.5
-
128
-
-
51449100794
-
SCA8 mRNA expression suggests an antisense regulation of KLHL1 and correlates to SCA8 pathology
-
(doi:10.1016/j.brainres.2008. 07.096)
-
Chen W-L, Lin J-W, Huang H-J, Wang S-M, Su M-T, Lee-Chen G-J, Chen C-M, Hsieh-Li HM. 2008 SCA8 mRNA expression suggests an antisense regulation of KLHL1 and correlates to SCA8 pathology. Brain Res. 1233, 176-184. (doi:10.1016/j.brainres.2008. 07.096)
-
(2008)
Brain Res.
, vol.1233
, pp. 176-184
-
-
Chen, W.-L.1
Lin, J.-W.2
Huang, H.-J.3
Wang, S.-M.4
Su, M.-T.5
Lee-Chen, G.-J.6
Chen, C.-M.7
Hsieh-Li, H.M.8
-
129
-
-
70149112363
-
RNA gain-of-function in spinocerebellar ataxia type 8
-
(doi:10.1371/journal. pgen.1000600)
-
Daughters RS, Tuttle DL, Gao W, Ikeda Y, Moseley ML, Ebner TJ, Swanson MS, Ranum LPW. 2009 RNA gain-of-function in spinocerebellar ataxia type 8. PLoS Genet. 5, e1000600. (doi:10.1371/journal. pgen.1000600)
-
(2009)
PLoS Genet.
, vol.5
-
-
Daughters, R.S.1
Tuttle, D.L.2
Gao, W.3
Ikeda, Y.4
Moseley, M.L.5
Ebner, T.J.6
Swanson, M.S.7
Ranum, L.P.W.8
-
130
-
-
80054832080
-
Expanded GGGGCC hexanucleotide repeat in non-coding region of C9ORF72 causes chromosome 9p-linked frontotemporal dementia and amyotrophic lateral sclerosis
-
(doi:10.1016/j. neuron.2011.09.011)
-
DeJesus-Hernandez M et al. 2011 Expanded GGGGCC hexanucleotide repeat in non-coding region of C9ORF72 causes chromosome 9p-linked frontotemporal dementia and amyotrophic lateral sclerosis. Neuron 72, 245-256. (doi:10.1016/j. neuron.2011.09.011)
-
(2011)
Neuron
, vol.72
, pp. 245-256
-
-
DeJesus-Hernandez, M.1
-
131
-
-
80054837386
-
A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD
-
(doi:10. 1016/j.neuron.2011.09.010)
-
Renton AE et al. 2011 A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD. Neuron 72, 257-268. (doi:10. 1016/j.neuron.2011.09.010)
-
(2011)
Neuron
, vol.72
, pp. 257-268
-
-
Renton, A.E.1
-
132
-
-
84890837640
-
RAN proteins and RNA foci from antisense transcripts in C9ORF72 ALS and frontotemporal dementia
-
(doi:10.1073/pnas. 1315438110)
-
Zu T et al. 2013 RAN proteins and RNA foci from antisense transcripts in C9ORF72 ALS and frontotemporal dementia. Proc. Natl Acad. Sci. USA 110, E4968-E4977. (doi:10.1073/pnas. 1315438110)
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
-
-
Zu, T.1
-
133
-
-
84892585908
-
C9orf72 frontotemporal lobar degeneration is characterised by frequent neuronal sense and antisense RNA foci
-
(doi:10.1007/ s00401-013-1200-z)
-
Mizielinska S, Lashley T, Norona FE, Clayton EL, Ridler CE, Fratta P, Isaacs AM. 2013 C9orf72 frontotemporal lobar degeneration is characterised by frequent neuronal sense and antisense RNA foci. Acta Neuropathol. 126, 845-857. (doi:10.1007/ s00401-013-1200-z)
-
(2013)
Acta Neuropathol.
, vol.126
, pp. 845-857
-
-
Mizielinska, S.1
Lashley, T.2
Norona, F.E.3
Clayton, E.L.4
Ridler, C.E.5
Fratta, P.6
Isaacs, A.M.7
-
134
-
-
84888098632
-
Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration
-
(doi:10.1073/ pnas.1318835110)
-
Lagier-Tourenne C et al. 2013 Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration. Proc. Natl Acad. Sci. USA 110, E4530-E4539. (doi:10.1073/ pnas.1318835110)
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
-
-
Lagier-Tourenne, C.1
-
135
-
-
84892590289
-
Antisense transcripts of the expanded C9ORF72 hexanucleotide repeat form nuclear RNA foci and undergo repeat-associated non-ATG translation in c9FTD/ALS
-
(doi:10.1007/s00401-013-1192-8)
-
Gendron TF et al. 2013 Antisense transcripts of the expanded C9ORF72 hexanucleotide repeat form nuclear RNA foci and undergo repeat-associated non-ATG translation in c9FTD/ALS. Acta Neuropathol. 126, 829-844. (doi:10.1007/s00401-013-1192-8)
-
(2013)
Acta Neuropathol.
, vol.126
, pp. 829-844
-
-
Gendron, T.F.1
-
136
-
-
84892585689
-
Bidirectional transcripts of the expanded C9orf72 hexanucleotide repeat are translated into aggregating dipeptide repeat proteins
-
(doi:10. 1007/s00401-013-1189-3)
-
Mori K et al. 2013 Bidirectional transcripts of the expanded C9orf72 hexanucleotide repeat are translated into aggregating dipeptide repeat proteins. Acta Neuropathol. 126, 881-893. (doi:10. 1007/s00401-013-1189-3)
-
(2013)
Acta Neuropathol.
, vol.126
, pp. 881-893
-
-
Mori, K.1
-
137
-
-
33644783812
-
Regional and cellular gene expression changes in human Huntington's disease brain
-
(doi:10. 1093/hmg/ddl013)
-
Hodges A et al. 2006 Regional and cellular gene expression changes in human Huntington's disease brain. Hum. Mol. Genet. 15, 965-977. (doi:10. 1093/hmg/ddl013)
-
(2006)
Hum. Mol. Genet.
, vol.15
, pp. 965-977
-
-
Hodges, A.1
-
138
-
-
84862777038
-
Long non-coding RNAs in Huntington's disease neurodegeneration
-
(doi:10.1016/j.nbd.2011.12.006)
-
Johnson R. 2012 Long non-coding RNAs in Huntington's disease neurodegeneration. Neurobiol. Dis. 46, 245-254. (doi:10.1016/j.nbd.2011.12.006)
-
(2012)
Neurobiol. Dis.
, vol.46
, pp. 245-254
-
-
Johnson, R.1
-
139
-
-
78651305638
-
Mining Affymetrix microarray data for long non-coding RNAs: Altered expression in the nucleus accumbens of heroin abusers
-
(doi:10.1111/j.1471-4159.2010.07126.x)
-
Michelhaugh SK, Lipovich L, Blythe J, Jia H, Kapatos G, Bannon MJ. 2011 Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers. J. Neurochem. 116, 459-466. (doi:10.1111/j.1471-4159.2010.07126.x)
-
(2011)
J. Neurochem.
, vol.116
, pp. 459-466
-
-
Michelhaugh, S.K.1
Lipovich, L.2
Blythe, J.3
Jia, H.4
Kapatos, G.5
Bannon, M.J.6
-
140
-
-
75449102536
-
Alzheimer's disease
-
(doi:10. 1056/NEJMra0909142)
-
Querfurth HW, LaFerla FM. 2010 Alzheimer's disease. N. Engl. J. Med. 362, 329-344. (doi:10. 1056/NEJMra0909142)
-
(2010)
N. Engl. J. Med.
, vol.362
, pp. 329-344
-
-
Querfurth, H.W.1
LaFerla, F.M.2
-
141
-
-
80052678741
-
Knockdown of BACE1-AS nonprotein-coding transcript modulates beta-amyloid-related hippocampal neurogenesis
-
(doi:10.4061/2011/929042)
-
Modarresi F, Faghihi MA, Patel NS, Sahagan BG, Wahlestedt C, Lopez-Toledano MA. 2011 Knockdown of BACE1-AS nonprotein-coding transcript modulates beta-amyloid-related hippocampal neurogenesis. Int. J. Alzheimers Dis. 2011, 929042. (doi:10.4061/2011/929042)
-
(2011)
Int. J. Alzheimers Dis.
, vol.2011
, pp. 929042
-
-
Modarresi, F.1
Faghihi, M.A.2
Patel, N.S.3
Sahagan, B.G.4
Wahlestedt, C.5
Lopez-Toledano, M.A.6
-
142
-
-
34547515964
-
Dendritic BC200 RNA in aging and in Alzheimer's disease
-
(doi:10.1073/pnas. 0701532104)
-
Mus E, Hof PR, Tiedge H. 2007 Dendritic BC200 RNA in aging and in Alzheimer's disease. Proc. Natl Acad. Sci. USA 104, 10 679-10 684. (doi:10.1073/pnas. 0701532104)
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 10679-10684
-
-
Mus, E.1
Hof, P.R.2
Tiedge, H.3
-
143
-
-
0027299483
-
Primary structure, neural-specific expression, and dendritic location of human BC200 RNA
-
Tiedge H, Chen W, Brosius J. 1993 Primary structure, neural-specific expression, and dendritic location of human BC200 RNA. J. Neurosci. 13, 2382-2390.
-
(1993)
J. Neurosci.
, vol.13
, pp. 2382-2390
-
-
Tiedge, H.1
Chen, W.2
Brosius, J.3
-
144
-
-
18644380021
-
Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles
-
(doi:10.1016/S0022-2836(02)00655-1)
-
Muddashetty R et al. 2002 Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. J. Mol. Biol. 321, 433-445. (doi:10.1016/S0022-2836(02)00655-1)
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 433-445
-
-
Muddashetty, R.1
-
145
-
-
3943107461
-
Role of a neuronal small non-messenger RNA: Behavioural alterations in BC1 RNA-deleted mice
-
(doi:10.1016/j.bbr.2004.02.015)
-
Lewejohann L et al. 2004 Role of a neuronal small non-messenger RNA: behavioural alterations in BC1 RNA-deleted mice. Behav. Brain Res. 154, 273-289. (doi:10.1016/j.bbr.2004.02.015)
-
(2004)
Behav. Brain Res.
, vol.154
, pp. 273-289
-
-
Lewejohann, L.1
-
146
-
-
54549086639
-
Autism: Many genes, common pathways?
-
(doi:10.1016/j.cell. 2008.10.016)
-
Geschwind DH. 2008 Autism: many genes, common pathways? Cell 135, 391-395. (doi:10.1016/j.cell. 2008.10.016)
-
(2008)
Cell
, vol.135
, pp. 391-395
-
-
Geschwind, D.H.1
-
147
-
-
84879385237
-
Aberrant expression of long noncoding RNAs in autistic brain
-
(doi:10.1007/s12031-012-9880-8)
-
Ziats MN, Rennert OM. 2013 Aberrant expression of long noncoding RNAs in autistic brain. J. Mol. Neurosci. 49, 589-593. (doi:10.1007/s12031-012-9880-8)
-
(2013)
J. Mol. Neurosci.
, vol.49
, pp. 589-593
-
-
Ziats, M.N.1
Rennert, O.M.2
-
148
-
-
84883271723
-
Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders
-
(doi:10.1186/2040-2392-4-32)
-
Velmeshev D, Magistri M, Faghihi MA. 2013 Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders. Mol. Autism 4, 32. (doi:10.1186/2040-2392-4-32)
-
(2013)
Mol. Autism
, vol.4
, pp. 32
-
-
Velmeshev, D.1
Magistri, M.2
Faghihi, M.A.3
-
149
-
-
84859513087
-
A noncoding RNA antisense to moesin at 5p14.1 in autism
-
(doi:10.1126/scitranslmed.3003479)
-
Kerin T, Ramanathan A, Rivas K, Grepo N, Coetzee GA, Campbell DB. 2012 A noncoding RNA antisense to moesin at 5p14.1 in autism. Sci. Transl. Med. 4, 128ra40. (doi:10.1126/scitranslmed.3003479)
-
(2012)
Sci. Transl. Med.
, vol.4
-
-
Kerin, T.1
Ramanathan, A.2
Rivas, K.3
Grepo, N.4
Coetzee, G.A.5
Campbell, D.B.6
-
150
-
-
0032547839
-
Suppression of radixin and moesin alters growth cone morphology, motility, and process formation in primary cultured neurons
-
(doi:10.1083/jcb.143.2.443)
-
Paglini G, Kunda P, Quiroga S, Kosik K, Caceres A. 1998 Suppression of radixin and moesin alters growth cone morphology, motility, and process formation in primary cultured neurons. J. Cell Biol. 143, 443-455. (doi:10.1083/jcb.143.2.443)
-
(1998)
J. Cell Biol.
, vol.143
, pp. 443-455
-
-
Paglini, G.1
Kunda, P.2
Quiroga, S.3
Kosik, K.4
Caceres, A.5
-
151
-
-
79961128595
-
CGG repeat in the FMR1 gene: Size matters
-
(doi:10.1111/j.1399-0004.2011. 01723.x)
-
Willemsen R, Levenga J, Oostra BA. 2011 CGG repeat in the FMR1 gene: size matters. Clin. Genet. 80, 214-225. (doi:10.1111/j.1399-0004.2011. 01723.x)
-
(2011)
Clin. Genet.
, vol.80
, pp. 214-225
-
-
Willemsen, R.1
Levenga, J.2
Oostra, B.A.3
-
152
-
-
44949246486
-
A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome
-
(doi:10.1371/journal. pone.0001486)
-
Khalil AM, Faghihi MA, Modarresi F, Brothers SP, Wahlestedt C. 2008 A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome. PLoS ONE 3, e1486. (doi:10.1371/journal. pone.0001486)
-
(2008)
PLoS ONE
, vol.3
-
-
Khalil, A.M.1
Faghihi, M.A.2
Modarresi, F.3
Brothers, S.P.4
Wahlestedt, C.5
-
153
-
-
36248967098
-
An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals
-
(doi:10.1093/hmg/ddm293)
-
Ladd PD et al. 2007 An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals. Hum. Mol. Genet. 16, 3174-3187. (doi:10.1093/hmg/ddm293)
-
(2007)
Hum. Mol. Genet.
, vol.16
, pp. 3174-3187
-
-
Ladd, P.D.1
-
154
-
-
84891870087
-
Comprehensive analysis of the transcriptional landscape of the human FMR1 gene reveals two new long noncoding RNAs differentially expressed in fragile X syndrome and fragile X-associated tremor/ataxia syndrome
-
(doi:10.1007/s00439-013-1356-6)
-
Pastori C, Peschansky VJ, Barbouth D, Mehta A, Silva JP, Wahlestedt C. 2014 Comprehensive analysis of the transcriptional landscape of the human FMR1 gene reveals two new long noncoding RNAs differentially expressed in fragile X syndrome and fragile X-associated tremor/ataxia syndrome. Hum. Genet. 133, 59-67. (doi:10.1007/s00439-013-1356-6)
-
(2014)
Hum. Genet.
, vol.133
, pp. 59-67
-
-
Pastori, C.1
Peschansky, V.J.2
Barbouth, D.3
Mehta, A.4
Silva, J.P.5
Wahlestedt, C.6
-
155
-
-
84880799926
-
Role of CTCF protein in regulating FMR1 locus transcription
-
(doi:10.1371/journal.pgen.1003601)
-
Lanni S et al. 2013 Role of CTCF protein in regulating FMR1 locus transcription. PLoS Genet. 9, e1003601. (doi:10.1371/journal.pgen.1003601)
-
(2013)
PLoS Genet.
, vol.9
-
-
Lanni, S.1
-
156
-
-
84897108067
-
The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing
-
(doi:10.1038/mp.2013.45)
-
Barry G et al. 2013 The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. Mol. Psychiatry 19, 486-494. (doi:10.1038/mp.2013.45)
-
(2013)
Mol. Psychiatry
, vol.19
, pp. 486-494
-
-
Barry, G.1
-
157
-
-
0034702026
-
Disruption of two novel genes by a translocation co-segregating with schizophrenia
-
(doi:10.1093/hmg/9.9.1415)
-
Millar JK et al. 2000 Disruption of two novel genes by a translocation co-segregating with schizophrenia. Hum. Mol. Genet. 9, 1415-1423. (doi:10.1093/hmg/9.9.1415)
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 1415-1423
-
-
Millar, J.K.1
-
158
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
-
(doi:10.1038/sj.onc.1206928)
-
Ji P et al. 2003 MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 22, 8031-8041. (doi:10.1038/sj.onc.1206928)
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
-
159
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
(doi:10.1016/j.cell.2010.06.040)
-
Huarte M et al. 2010 A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 142, 409-419. (doi:10.1016/j.cell.2010.06.040)
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
-
160
-
-
84884782873
-
Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2
-
(doi:10.1186/gb-2013-14-9-r104)
-
Marín-Béjar O et al. 2013 Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2. Genome Biol. 14, R104. (doi:10.1186/gb-2013-14-9-r104)
-
(2013)
Genome Biol.
, vol.14
-
-
Marín-Béjar, O.1
-
161
-
-
34248547495
-
Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: Identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF
-
(doi:10.1158/0008-5472.CAN-06-2004)
-
Pasmant E, Laurendeau I, Héron D, Vidaud M, Vidaud D, Bièche I. 2007 Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF. Cancer Res. 67, 3963-3969. (doi:10.1158/0008-5472.CAN-06-2004)
-
(2007)
Cancer Res.
, vol.67
, pp. 3963-3969
-
-
Pasmant, E.1
Laurendeau, I.2
Héron, D.3
Vidaud, M.4
Vidaud, D.5
Bièche, I.6
-
162
-
-
79955468280
-
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
-
(doi:10.1038/onc.2010.568)
-
Kotake Y, Nakagawa T, Kitagawa K, Suzuki S, Liu N, Kitagawa M, Xiong Y. 2011 Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene 30, 1956-1962. (doi:10.1038/onc.2010.568)
-
(2011)
Oncogene
, vol.30
, pp. 1956-1962
-
-
Kotake, Y.1
Nakagawa, T.2
Kitagawa, K.3
Suzuki, S.4
Liu, N.5
Kitagawa, M.6
Xiong, Y.7
-
163
-
-
84863708888
-
Long non-coding RNA expression profiles predict clinical phenotypes in glioma
-
(doi:10.1016/j.nbd.2012.06.004)
-
Zhang X, Sun S, Pu JKS, Tsang ACO, Lee D, Man VOY, Lui WM, Wong STS, Leung GKK. 2012 Long non-coding RNA expression profiles predict clinical phenotypes in glioma. Neurobiol. Dis. 48, 1-8. (doi:10.1016/j.nbd.2012.06.004)
-
(2012)
Neurobiol. Dis.
, vol.48
, pp. 1-8
-
-
Zhang, X.1
Sun, S.2
Pu, J.K.S.3
Tsang, A.C.O.4
Lee, D.5
Man, V.O.Y.6
Lui, W.M.7
Wong, S.T.S.8
Leung, G.K.K.9
-
164
-
-
84876076478
-
CRNDE: A long non-coding RNA involved in cancer, neurobiology, and development
-
(doi:10. 3389/fgene.2012.00270)
-
Ellis BC, Molloy PL, Graham LD. 2012 CRNDE: a long non-coding RNA involved in cancer, neurobiology, and development. Front. Genet. 3, 270. (doi:10. 3389/fgene.2012.00270)
-
(2012)
Front. Genet.
, vol.3
, pp. 270
-
-
Ellis, B.C.1
Molloy, P.L.2
Graham, L.D.3
-
165
-
-
77954460345
-
Increased expression of angiogenic genes in the brains of mouse meg3-null embryos
-
(doi:10.1210/en.2009-1151)
-
Gordon FE, Nutt CL, Cheunsuchon P, Nakayama Y, Provencher KA, Rice KA, Zhou Y, Zhang X, Klibanski A. 2010 Increased expression of angiogenic genes in the brains of mouse meg3-null embryos. Endocrinology 151, 2443-2452. (doi:10.1210/en.2009-1151)
-
(2010)
Endocrinology
, vol.151
, pp. 2443-2452
-
-
Gordon, F.E.1
Nutt, C.L.2
Cheunsuchon, P.3
Nakayama, Y.4
Provencher, K.A.5
Rice, K.A.6
Zhou, Y.7
Zhang, X.8
Klibanski, A.9
-
166
-
-
0345172377
-
A pituitary-derived MEG3 isoform functions as a growth suppressor in tumor cells
-
(doi:10.1210/jc. 2003-030222)
-
Zhang X, Zhou Y, Mehta KR, Danila DC, Scolavino S, Johnson SR, Klibanski A. 2003 A pituitary-derived MEG3 isoform functions as a growth suppressor in tumor cells. J. Clin. Endocrinol. Metab. 88, 5119-5126. (doi:10.1210/jc. 2003-030222)
-
(2003)
J. Clin. Endocrinol. Metab.
, vol.88
, pp. 5119-5126
-
-
Zhang, X.1
Zhou, Y.2
Mehta, K.R.3
Danila, D.C.4
Scolavino, S.5
Johnson, S.R.6
Klibanski, A.7
-
167
-
-
84872006379
-
MEG3: A novel long noncoding potentially tumoursuppressing RNA in meningiomas
-
(doi:10.1007/s11060-012-1038-6)
-
Balik V, Srovnal J, Sulla I, Kalita O, Foltanova T, Vaverka M, Hrabalek L, Hajduch M. 2013 MEG3: a novel long noncoding potentially tumoursuppressing RNA in meningiomas. J. Neurooncol. 112, 1-8. (doi:10.1007/s11060-012-1038-6)
-
(2013)
J. Neurooncol.
, vol.112
, pp. 1-8
-
-
Balik, V.1
Srovnal, J.2
Sulla, I.3
Kalita, O.4
Foltanova, T.5
Vaverka, M.6
Hrabalek, L.7
Hajduch, M.8
-
168
-
-
2442699825
-
Increasing biological complexity is positively correlated with the relative genome-wide expansion of non-protein-coding DNA sequences
-
(doi:10.1186/gb-2003-5-1-p1)
-
Taft RJ, Mattick JS. 2003 Increasing biological complexity is positively correlated with the relative genome-wide expansion of non-protein-coding DNA sequences. Genome Biol. 5, P1. (doi:10.1186/gb-2003-5-1-p1)
-
(2003)
Genome Biol.
, vol.5
-
-
Taft, R.J.1
Mattick, J.S.2
-
169
-
-
33747706117
-
Non-coding RNAs in the nervous system
-
(doi:10.1113/jphysiol.2006.113191)
-
Mehler MF, Mattick JS. 2006 Non-coding RNAs in the nervous system. J. Physiol. 575, 333-341. (doi:10.1113/jphysiol.2006.113191)
-
(2006)
J. Physiol.
, vol.575
, pp. 333-341
-
-
Mehler, M.F.1
Mattick, J.S.2
-
170
-
-
52449130135
-
Noncoding RNAs in long-term memory formation
-
(doi:10.1177/1073858408319187)
-
Mercer TR, Dinger ME, Mariani J, Kosik KS, Mehler MF, Mattick JS. 2008 Noncoding RNAs in long-term memory formation. Neuroscientist 14, 434-445. (doi:10.1177/1073858408319187)
-
(2008)
Neuroscientist
, vol.14
, pp. 434-445
-
-
Mercer, T.R.1
Dinger, M.E.2
Mariani, J.3
Kosik, K.S.4
Mehler, M.F.5
Mattick, J.S.6
-
171
-
-
84879166632
-
Therapeutic targeting of non-coding RNAs
-
(doi:10.1042/bse0540127)
-
Roberts TC, Wood MJA. 2013 Therapeutic targeting of non-coding RNAs. Essays Biochem. 54, 127-145. (doi:10.1042/bse0540127)
-
(2013)
Essays Biochem.
, vol.54
, pp. 127-145
-
-
Roberts, T.C.1
Wood, M.J.A.2
-
172
-
-
84860353437
-
Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation
-
(doi:10.1038/nbt.2158)
-
Modarresi F, Faghihi MA, Lopez-Toledano MA, Fatemi RP, Magistri M, Brothers SP, van der Brug MP, Wahlestedt C. 2012 Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. Nat. Biotechnol. 30, 453-459. (doi:10.1038/nbt.2158)
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 453-459
-
-
Modarresi, F.1
Faghihi, M.A.2
Lopez-Toledano, M.A.3
Fatemi, R.P.4
Magistri, M.5
Brothers, S.P.6
van der Brug, M.P.7
Wahlestedt, C.8
|