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Volumn 472, Issue 7341, 2011, Pages 120-126

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

Author keywords

[No Author keywords available]

Indexed keywords

HOX PROTEIN; UNTRANSLATED RNA;

EID: 79953748673     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature09819     Document Type: Article
Times cited : (1691)

References (45)
  • 1
  • 2
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • Ponting, C. P., Oliver, P. L. & Reik, W. Evolution and functions of long noncoding RNAs. Cell 136, 629-641 (2009).
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 3
    • 33644514069 scopus 로고    scopus 로고
    • Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax
    • Sanchez-Elsner, T., Gou, D., Kremmer, E. & Sauer, F. Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax. Science 311, 1118-1123 (2006).
    • (2006) Science , vol.311 , pp. 1118-1123
    • Sanchez-Elsner, T.1    Gou, D.2    Kremmer, E.3    Sauer, F.4
  • 4
    • 33845452031 scopus 로고    scopus 로고
    • Transcription of bxd Noncoding RNAs Promoted by Trithorax Represses Ubx in cis by Transcriptional Interference
    • DOI 10.1016/j.cell.2006.10.039, PII S009286740601467X
    • Petruk, S. et al. Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference. Cell 127, 1209-1221 (2006). (Pubitemid 44894524)
    • (2006) Cell , vol.127 , Issue.6 , pp. 1209-1221
    • Petruk, S.1    Sedkov, Y.2    Riley, K.M.3    Hodgson, J.4    Schweisguth, F.5    Hirose, S.6    Jaynes, J.B.7    Brock, H.W.8    Mazo, A.9
  • 5
    • 50649118350 scopus 로고    scopus 로고
    • Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
    • Dinger, M. E. et al. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res. 18, 1433-1445 (2008).
    • (2008) Genome Res. , vol.18 , pp. 1433-1445
    • Dinger, M.E.1
  • 6
    • 29444448047 scopus 로고    scopus 로고
    • On a chromosome far, far away: LCRs and gene expression
    • DOI 10.1016/j.tig.2005.11.001, PII S0168952505003306
    • Dean, A. On a chromosome far, far away: LCRs and gene expression. Trends Genet. 22, 38-45 (2006). (Pubitemid 43011996)
    • (2006) Trends in Genetics , vol.22 , Issue.1 , pp. 38-45
    • Dean, A.1
  • 7
    • 0030826364 scopus 로고    scopus 로고
    • Intergenic transcription and transinduction of the human β-globin locus
    • Ashe, H. L., Monks, J., Wijgerde, M., Fraser, P. & Proudfoot, N. J. Intergenic transcription and transinduction of the human b-globin locus. Genes Dev. 11, 2494-2509 (1997). (Pubitemid 27438831)
    • (1997) Genes and Development , vol.11 , Issue.19 , pp. 2494-2509
    • Ashe, H.L.1    Monks, J.2    Wijgerde, M.3    Fraser, P.4    Proudfoot, N.J.5
  • 8
    • 77952908743 scopus 로고    scopus 로고
    • A large fraction of extragenicRNA Pol II transcription sites overlap enhancers
    • DeSanta, F. et al. A large fraction of extragenicRNA Pol II transcription sites overlap enhancers. PLoS Biol. 8, e1000384 (2010).
    • (2010) PLoS Biol. , vol.8
    • Desanta, F.1
  • 9
    • 77952367798 scopus 로고    scopus 로고
    • Widespread transcription at neuronal activity-regulated enhancers
    • Kim, T. K. et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187 (2010).
    • (2010) Nature , vol.465 , pp. 182-187
    • Kim, T.K.1
  • 10
    • 77957243921 scopus 로고    scopus 로고
    • Long noncodingRNAs with enhancer-like function inhumancells
    • Ørom, U.A. et al. Long noncodingRNAs with enhancer-like function inhumancells. Cell 143, 46-58 (2010).
    • (2010) Cell , vol.143 , pp. 46-58
    • Ørom, U.A.1
  • 11
    • 70849106865 scopus 로고    scopus 로고
    • Anatomic demarcation of cells: Genes to patterns
    • Chang, H. Y. Anatomic demarcation of cells: genes to patterns. Science 326, 1206-1207 (2009).
    • (2009) Science , vol.326 , pp. 1206-1207
    • Chang, H.Y.1
  • 14
    • 33847084602 scopus 로고    scopus 로고
    • Genome regulation by polycomb and trithorax proteins
    • DOI 10.1016/j.cell.2007.02.009, PII S0092867407001900
    • Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B. & Cavalli, G. Genome regulation by polycomb and trithorax proteins. Cell 128, 735-745 (2007). (Pubitemid 46273581)
    • (2007) Cell , vol.128 , Issue.4 , pp. 735-745
    • Schuettengruber, B.1    Chourrout, D.2    Vervoort, M.3    Leblanc, B.4    Cavalli, G.5
  • 15
    • 63849156246 scopus 로고    scopus 로고
    • A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
    • Zhang, X. et al. A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. Blood 113, 2526-2534 (2009).
    • (2009) Blood , vol.113 , pp. 2526-2534
    • Zhang, X.1
  • 16
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • Bernstein, B. E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326 (2006).
    • (2006) Cell , vol.125 , pp. 315-326
    • Bernstein, B.E.1
  • 17
    • 0037079049 scopus 로고    scopus 로고
    • Serial deletions and duplications suggest a mechanism for the collinearity of Hoxd genes in limbs
    • DOI 10.1038/nature01189
    • Kmita, M., Fraudeau, N., Herault, Y. & Duboule, D. Serial deletions and duplications suggest a mechanism for the collinearity of Hoxd genes in limbs. Nature 420, 145-150 (2002). (Pubitemid 35340111)
    • (2002) Nature , vol.420 , Issue.6912 , pp. 145-150
    • Kmita, M.1    Fraudeau, N.2    Herault, Y.3    Duboule, D.4
  • 18
    • 33645015382 scopus 로고    scopus 로고
    • RCAS-RNAi: A loss-of-function method for the developing chick retina
    • Harpavat, S. & Cepko, C. L. RCAS-RNAi: a loss-of-function method for the developing chick retina. BMC Dev. Biol. 6, 2 (2006).
    • (2006) BMC Dev. Biol. , vol.6 , pp. 2
    • Harpavat, S.1    Cepko, C.L.2
  • 20
    • 21344455343 scopus 로고    scopus 로고
    • Early developmental arrest of mammalian limbs lacking HoxA/HoxD gene function
    • DOI 10.1038/nature03648
    • Kmita, M. et al. Early developmental arrest of mammalian limbs lacking HoxA/ HoxD gene function. Nature 435, 1113-1116 (2005). (Pubitemid 40910519)
    • (2005) Nature , vol.435 , Issue.7045 , pp. 1113-1116
    • Kmita, M.1    Tarchini, B.2    Zakany, J.3    Logan, M.4    Tabin, C.J.5    Duboule, D.6
  • 21
    • 0027131262 scopus 로고
    • Homeotic transformations and limb defects in Hox A11 mutant mice
    • Small, K. M. & Potter, S. S. Homeotic transformations and limb defects in Hox A11 mutant mice. Genes Dev. 7, 2318-2328 (1993). (Pubitemid 24003236)
    • (1993) Genes and Development , vol.7 , Issue.12 A , pp. 2318-2328
    • Small, K.M.1    Potter, S.S.2
  • 22
    • 0029026767 scopus 로고
    • Absence of radius and ulna in mice lacking hoxa-11 and hoxd-11
    • Davis, A. P., Witte, D. P., Hsieh-Li, H. M., Potter, S. S. & Capecchi, M. R. Absence of radius and ulna in mice lacking hoxa-11 and hoxd-11. Nature 375, 791-795 (1995).
    • (1995) Nature , vol.375 , pp. 791-795
    • Davis, A.P.1    Witte, D.P.2    Hsieh-Li, H.M.3    Potter, S.S.4    Capecchi, M.R.5
  • 24
    • 33846019277 scopus 로고    scopus 로고
    • Methylation of Lysine 4 on Histone H3: Intricacy of Writing and Reading a Single Epigenetic Mark
    • DOI 10.1016/j.molcel.2006.12.014, PII S1097276506008720
    • Ruthenburg, A. J., Allis, C. D. & Wysocka, J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol. Cell 25, 15-30 (2007). (Pubitemid 46049068)
    • (2007) Molecular Cell , vol.25 , Issue.1 , pp. 15-30
    • Ruthenburg, A.J.1    Allis, C.D.2    Wysocka, J.3
  • 25
    • 71949107301 scopus 로고    scopus 로고
    • Global analysis of H3K4 methylation defines MLL family member targets and points to a role forMLL1-mediatedH3K4methylation in the regulation of transcriptional initiation by RNA polymerase II
    • Wang, P. et al. Global analysis of H3K4 methylation defines MLL family member targets and points to a role forMLL1-mediatedH3K4methylation in the regulation of transcriptional initiation by RNA polymerase II. Mol. Cell. Biol. 29, 6074-6085 (2009).
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 6074-6085
    • Wang, P.1
  • 26
    • 20844443663 scopus 로고    scopus 로고
    • GlobalandHox-specific roles for theMLL1methyltransferase
    • Guenther, M. G. et al. GlobalandHox-specific roles for theMLL1methyltransferase. Proc. Natl Acad. Sci. USA 102, 8603-8608 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 8603-8608
    • Guenther, M.G.1
  • 27
    • 14044264220 scopus 로고    scopus 로고
    • A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes
    • DOI 10.1128/MCB.25.5.1891-1899.2005
    • Krajewski, W. A., Nakamura, T., Mazo, A. & Canaani, E. A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes. Mol. Cell. Biol. 25, 1891-1899 (2005). (Pubitemid 40280152)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.5 , pp. 1891-1899
    • Krajewski, W.A.1    Nakamura, T.2    Mazo, A.3    Canaani, E.4
  • 30
    • 70349625401 scopus 로고    scopus 로고
    • My5C: Web tools for chromosome conformation capture studies
    • Lajoie, B. R., van Berkum, N. L., Sanyal, A. & Dekker, J. My5C: web tools for chromosome conformation capture studies. Nature Methods 6, 690-691 (2009).
    • (2009) Nature Methods , vol.6 , pp. 690-691
    • Lajoie, B.R.1    Van Berkum, N.L.2    Sanyal, A.3    Dekker, J.4
  • 31
    • 0036790977 scopus 로고    scopus 로고
    • Diversity, topographic differentiation, and positional memory in human fibroblasts
    • Chang, H. Y. et al. Diversity, topographic differentiation, and positional memory in human fibroblasts. Proc. Natl Acad. Sci. USA 99, 12877-12882 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12877-12882
    • Chang, H.Y.1
  • 32
    • 19344363035 scopus 로고    scopus 로고
    • Gene expression signature of fibroblast serumresponse predicts human cancer progression: Similarities between tumors andwounds
    • Chang, H. Y. et al. Gene expression signature of fibroblast serumresponse predicts human cancer progression: similarities between tumors andwounds. PLoS Biol. 2, 206-214 (2004).
    • (2004) PLoS Biol. , vol.2 , pp. 206-214
    • Chang, H.Y.1
  • 34
    • 33746658155 scopus 로고    scopus 로고
    • Anatomic demarcation by positional variation in fibroblast gene expression programs
    • Rinn, J. L., Bondre, C., Gladstone, H. B., Brown, P. O. & Chang, H. Y. Anatomic demarcation by positional variation in fibroblast gene expression programs. PLoS Genet. 2, e119 (2006).
    • (2006) PLoS Genet. , vol.2
    • Rinn, J.L.1    Bondre, C.2    Gladstone, H.B.3    Brown, P.O.4    Chang, H.Y.5
  • 37
    • 66749180667 scopus 로고    scopus 로고
    • Epigenetic temporal control of mouse Hox genes in vivo
    • Soshnikova, N. & Duboule, D. Epigenetic temporal control of mouse Hox genes in vivo. Science 324, 1320-1323 (2009).
    • (2009) Science , vol.324 , pp. 1320-1323
    • Soshnikova, N.1    Duboule, D.2
  • 38
    • 33748645500 scopus 로고    scopus 로고
    • GENCODE: Producing a reference annotationforENCODE
    • Harrow, J. et al.GENCODE: producing a reference annotationforENCODE. Genome Biol. 7 (Suppl 1), S4 (2006).
    • (2006) Genome Biol. , vol.7 , Issue.SUPPL. 1
    • Harrow, J.1
  • 40
    • 34248524473 scopus 로고    scopus 로고
    • Mapping networks of physical interactions between genomic elements using 5C technology
    • DOI 10.1038/nprot.2007.116, PII NPROT.2007.116
    • Dostie, J. & Dekker, J.Mapping networks of physical interactions between genomic elements using 5C technology. Nature Protocols 2, 988-1002 (2007). (Pubitemid 46745595)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 988-1002
    • Dostie, J.1    Dekker, J.2
  • 43
    • 0023806075 scopus 로고
    • Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase
    • Smith, D. B. & Johnson, K. S. Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase. Gene 67, 31-40 (1988).
    • (1988) Gene , vol.67 , pp. 31-40
    • Smith, D.B.1    Johnson, K.S.2
  • 44
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam, J. D., Lebovitz, R. M. & Roeder, R. G. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11, 1475-1489 (1983).
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 45
    • 77955107974 scopus 로고    scopus 로고
    • RNase-assisted RNA chromatography
    • Michlewski, G. & Caceres, J. F. RNase-assisted RNA chromatography. RNA 16, 1673-1678 (2010).
    • (2010) RNA , vol.16 , pp. 1673-1678
    • Michlewski, G.1    Caceres, J.F.2


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