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Volumn 154, Issue 1, 2013, Pages 240-251

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA; UNTRANSLATED RNA;

EID: 84879969127     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2013.06.009     Document Type: Article
Times cited : (599)

References (33)
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D.P. (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Birney, E., Stamatoyannopoulos, J.A., Dutta, A., Guigó, R., Gingeras, T.R., Margulies, E.H., Weng, Z., Snyder, M., Dermitzakis, E.T., Thurman, R.E., et al.; ENCODE Project Consortium; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute. (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816.
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3    Guigó, R.4    Gingeras, T.R.5    Margulies, E.H.6    Weng, Z.7    Snyder, M.8    Dermitzakis, E.T.9    Thurman, R.E.10
  • 4
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M.C., Maeda, N., Oyama, R., Ravasi, T., Lenhard, B., Wells, C., et al.; FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). (2005). The transcriptional landscape of the mammalian genome. Science 309, 1559-1563.
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1    Kasukawa, T.2    Katayama, S.3    Gough, J.4    Frith, M.C.5    Maeda, N.6    Oyama, R.7    Ravasi, T.8    Lenhard, B.9    Wells, C.10
  • 7
    • 0035656688 scopus 로고    scopus 로고
    • Non-coding RNA genes and the modern RNA world
    • Eddy, S.R. (2001). Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2, 919-929.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 919-929
    • Eddy, S.R.1
  • 9
    • 0028210604 scopus 로고
    • Initiation codons within 5′-leaders of mRNAs as regulators of translation
    • Geballe, A.P., and Morris, D.R. (1994). Initiation codons within 5′-leaders of mRNAs as regulators of translation. Trends Biochem. Sci. 19, 159-164.
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 159-164
    • Geballe, A.P.1    Morris, D.R.2
  • 10
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • Guttman, M., and Rinn, J.L. (2012). Modular regulatory principles of large non-coding RNAs. Nature 482, 339-346.
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 14
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia, N.T., Ghaemmaghami, S., Newman, J.R., and Weissman, J.S. (2009). Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 15
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia, N.T., Lareau, L.F., and Weissman, J.S. (2011). Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147, 789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 16
    • 75149196287 scopus 로고    scopus 로고
    • The mechanism of eukaryotic translation initiation and principles of its regulation
    • Jackson, R.J., Hellen, C.U., and Pestova, T.V. (2010). The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Biol. 11, 113-127.
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 113-127
    • Jackson, R.J.1    Hellen, C.U.2    Pestova, T.V.3
  • 20
    • 84866267681 scopus 로고    scopus 로고
    • Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
    • Lee, S., Liu, B., Lee, S., Huang, S.X., Shen, B., and Qian, S.B. (2012). Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution. Proc. Natl. Acad. Sci. USA 109, E2424-E2432.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109
    • Lee, S.1    Liu, B.2    Lee, S.3    Huang, S.X.4    Shen, B.5    Qian, S.B.6
  • 21
    • 79959446962 scopus 로고    scopus 로고
    • PhyloCSF: A comparative geno-mics method to distinguish protein coding and non-coding regions
    • Lin, M.F., Jungreis, I., and Kellis, M. (2011). PhyloCSF: a comparative geno-mics method to distinguish protein coding and non-coding regions. Bioinfor-matics 27, i275-i282.
    • (2011) Bioinfor-matics , vol.27
    • Lin, M.F.1    Jungreis, I.2    Kellis, M.3
  • 22
    • 5444264022 scopus 로고    scopus 로고
    • Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response
    • Lu, P.D., Harding, H.P., and Ron, D. (2004). Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response. J. Cell Biol. 167, 27-33.
    • (2004) J. Cell Biol. , vol.167 , pp. 27-33
    • Lu, P.D.1    Harding, H.P.2    Ron, D.3
  • 24
    • 84859436530 scopus 로고    scopus 로고
    • NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
    • Database issue
    • Pruitt, K.D., Tatusova, T., Brown, G.R., and Maglott, D.R. (2012). NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 40(Database issue), D130-D135.
    • (2012) Nucleic Acids Res. , vol.40
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 25
    • 0033037541 scopus 로고    scopus 로고
    • The INK4A/ARF locus and its two gene products
    • Sharpless, N.E., and DePinho, R.A. (1999). The INK4A/ARF locus and its two gene products. Curr. Opin. Genet. Dev. 9, 22-30.
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 22-30
    • Sharpless, N.E.1    Depinho, R.A.2
  • 26
    • 0025021235 scopus 로고
    • Functional evidence for an RNA template in telomerase
    • Shippen-Lentz, D., and Blackburn, E.H. (1990). Functional evidence for an RNA template in telomerase. Science 247, 546-552.
    • (1990) Science , vol.247 , pp. 546-552
    • Shippen-Lentz, D.1    Blackburn, E.H.2
  • 28
    • 0031756336 scopus 로고    scopus 로고
    • Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5′-terminal oligopyr-imidine gene family reveals common featuresof snoRNA host genes
    • Smith, C.M., and Steitz, J.A. (1998). Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5′-terminal oligopyr-imidine gene family reveals common featuresof snoRNA host genes. Mol. Cell. Biol. 18, 6897-6909.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 6897-6909
    • Smith, C.M.1    Steitz, J.A.2
  • 29
    • 54949134074 scopus 로고    scopus 로고
    • A distinct translation initiation mechanism generates cryptic peptides for immune surveillance
    • Starck, S.R., Ow, Y., Jiang, V., Tokuyama, M., Rivera, M., Qi, X., Roberts, R.W., and Shastri, N. (2008). A distinct translation initiation mechanism generates cryptic peptides for immune surveillance. PLoS ONE 3, e3460.
    • (2008) PLoS ONE , vol.3
    • Starck, S.R.1    Ow, Y.2    Jiang, V.3    Tokuyama, M.4    Rivera, M.5    Qi, X.6    Roberts, R.W.7    Shastri, N.8
  • 32
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky, I., Shkumatava, A., Jan, C.H., Sive, H., and Bartel, D.P. (2011). Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147, 1537-1550.
    • (2011) Cell , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5
  • 33
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncod-ing RNAs
    • Wang, K.C., and Chang, H.Y. (2011). Molecular mechanisms of long noncod-ing RNAs. Mol. Cell 43, 904-914.
    • (2011) Mol. Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.