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Volumn 42, Issue 13, 2014, Pages 8816-8829

MegaTevs: Single-chain dual nucleases for efficient gene disruption

Author keywords

[No Author keywords available]

Indexed keywords

CYSTEINYLASPARAGINYLASPARAGINYLASPARAGINYLGLYCINE; DOUBLE STRANDED DNA; HYBRID PROTEIN; MEGANUCLEASE TEV FUSION PROTEIN; NUCLEASE; POLYPEPTIDE; UNCLASSIFIED DRUG;

EID: 84905586329     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku573     Document Type: Article
Times cited : (17)

References (60)
  • 1
    • 84879264708 scopus 로고    scopus 로고
    • ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
    • Gaj, T., Gersbach, C.A. and Barbas, C.F. III (2013) ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotechnol., 31, 397-405.
    • (2013) Trends Biotechnol. , vol.31 , pp. 397-405
    • Gaj, T.1    Gersbach, C.A.2
  • 2
    • 84888107953 scopus 로고    scopus 로고
    • Genome engineering with TAL-effector nucleases and alternative modular nuclease technologies
    • Scharenberg, A.M., Duchateau, P. and Smith, J. (2013) Genome engineering with TAL-effector nucleases and alternative modular nuclease technologies. Curr. Gene Ther., 13, 291-303.
    • (2013) Curr. Gene Ther. , vol.13 , pp. 291-303
    • Scharenberg, A.M.1    Duchateau, P.2    Smith, J.3
  • 4
    • 79960034141 scopus 로고    scopus 로고
    • Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes
    • Li, T., Huang, S., Zhao, X., Wright, D.A., Carpenter, S., Spalding, M.H., Weeks, D.P. and Yang, B. (2011) Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Nucleic Acids Res., 39, 6315-6325.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6315-6325
    • Li, T.1    Huang, S.2    Zhao, X.3    Wright, D.A.4    Carpenter, S.5    Spalding, M.H.6    Weeks, D.P.7    Yang, B.8
  • 5
    • 0038947196 scopus 로고    scopus 로고
    • Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions
    • Kim, Y.G., Shi, Y., Berg, J.M. and Chandrasegaran, S. (1997) Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions. Gene, 203, 43-49.
    • (1997) Gene , vol.203 , pp. 43-49
    • Kim, Y.G.1    Shi, Y.2    Berg, J.M.3    Chandrasegaran, S.4
  • 8
    • 0035946911 scopus 로고    scopus 로고
    • FokI requires two specific DNA sites for cleavage
    • Vanamee, E.S., Santagata, S. and Aggarwal, A.K. (2001) FokI requires two specific DNA sites for cleavage. J. Mol. Biol., 309, 69-78.
    • (2001) J. Mol. Biol. , vol.309 , pp. 69-78
    • Vanamee, E.S.1    Santagata, S.2    Aggarwal, A.K.3
  • 9
    • 0034283804 scopus 로고    scopus 로고
    • Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains
    • Smith, J., Bibikova, M., Whitby, F.G., Reddy, A.R., Chandrasegaran, S. and Carroll, D. (2000) Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains. Nucleic Acids Res., 28, 3361-3369.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3361-3369
    • Smith, J.1    Bibikova, M.2    Whitby, F.G.3    Reddy, A.R.4    Chandrasegaran, S.5    Carroll, D.6
  • 10
    • 78651341148 scopus 로고    scopus 로고
    • Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases
    • Gupta, A., Meng, X., Zhu, L.J., Lawson, N.D. and Wolfe, S.A. (2011) Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases. Nucleic Acids Res., 39, 381-392.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 381-392
    • Gupta, A.1    Meng, X.2    Zhu, L.J.3    Lawson, N.D.4    Wolfe, S.A.5
  • 11
    • 80052293623 scopus 로고    scopus 로고
    • Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection
    • Pattanayak, V., Ramirez, C.L., Joung, J.K. and Liu, D.R. (2011) Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat. Methods, 8, 765-770.
    • (2011) Nat. Methods , vol.8 , pp. 765-770
    • Pattanayak, V.1    Ramirez, C.L.2    Joung, J.K.3    Liu, D.R.4
  • 13
    • 84872621523 scopus 로고    scopus 로고
    • Technology: A CRISPR genome-editing tool
    • Burgess, D.J. (2013) Technology: a CRISPR genome-editing tool. Nat. Rev. Genet., 14, 80.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 80
    • Burgess, D.J.1
  • 14
    • 84882787078 scopus 로고    scopus 로고
    • The CRISPR craze
    • Pennisi, E. (2013) The CRISPR craze. Science, 341, 833-836.
    • (2013) Science , vol.341 , pp. 833-836
    • Pennisi, E.1
  • 16
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A. and Charpentier, E. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337, 816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 17
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
    • Sternberg, S.H., Redding, S., Jinek, M., Greene, E.C. and Doudna, J.A. (2014) DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature, 507, 62-67 .
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 19
    • 78651240053 scopus 로고    scopus 로고
    • Homing endonucleases: From microbial genetic invaders to reagents for targeted DNA modification
    • Stoddard, B.L. (2011) Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification. Structure, 19, 7-15.
    • (2011) Structure , vol.19 , pp. 7-15
    • Stoddard, B.L.1
  • 20
    • 79951694132 scopus 로고    scopus 로고
    • Meganucleases and other tools for targeted genome engineering: Perspectives and challenges for gene therapy
    • Silva, G., Poirot, L., Galetto, R., Smith, J., Montoya, G., Duchateau, P. and Paques, F. (2011) Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy. Curr. Gene Ther., 11, 11-27.
    • (2011) Curr. Gene Ther. , vol.11 , pp. 11-27
    • Silva, G.1    Poirot, L.2    Galetto, R.3    Smith, J.4    Montoya, G.5    Duchateau, P.6    Paques, F.7
  • 21
    • 84876027225 scopus 로고    scopus 로고
    • A comprehensive approach to zinc-finger recombinase customization enables genomic targeting in human cells
    • Gaj, T., Mercer, A.C., Sirk, S.J., Smith, H.L. and Barbas, C.F. III (2013) A comprehensive approach to zinc-finger recombinase customization enables genomic targeting in human cells. Nucleic Acids Res., 41, 3937-3946.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 3937-3946
    • Gaj, T.1    Mercer, A.C.2    Sirk, S.J.3    Smith, H.L.4
  • 22
  • 23
    • 84855865479 scopus 로고    scopus 로고
    • Creating highly specific nucleases by fusion of active restriction endonucleases and catalytically inactive homing endonucleases
    • Fonfara, I., Curth, U., Pingoud, A. and Wende, W. (2011) Creating highly specific nucleases by fusion of active restriction endonucleases and catalytically inactive homing endonucleases. Nucleic Acids Res., 40, 847-860.
    • (2011) Nucleic Acids Res. , vol.40 , pp. 847-860
    • Fonfara, I.1    Curth, U.2    Pingoud, A.3    Wende, W.4
  • 29
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber, M.R. (2011) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu. Rev. Biochem., 79, 181-211.
    • (2011) Annu. Rev. Biochem. , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 30
    • 54849404458 scopus 로고    scopus 로고
    • MMEJ repair of double-strand breaks (director's cut): Deleted sequences and alternative endings
    • McVey, M. and Lee, S.E. (2008) MMEJ repair of double-strand breaks (director's cut): deleted sequences and alternative endings. Trends Genet., 24, 529-538.
    • (2008) Trends Genet. , vol.24 , pp. 529-538
    • McVey, M.1    Lee, S.E.2
  • 31
    • 38049155945 scopus 로고    scopus 로고
    • Regulation of DNA double-strand break repair pathway choice
    • Shrivastav, M., De Haro, L.P. and Nickoloff, J.A. (2008) Regulation of DNA double-strand break repair pathway choice. Cell Res., 18, 134-147.
    • (2008) Cell Res. , vol.18 , pp. 134-147
    • Shrivastav, M.1    De Haro, L.P.2    Nickoloff, J.A.3
  • 37
    • 77952316381 scopus 로고    scopus 로고
    • A unified genetic, computational, and experimental framework identifies noon-conserved residues as critical for function of the homing endonuclease I-BmoI
    • Kleinstiver, B.P., Fernandes, A., Gloor, G.B. and Edgell, D.R. (2010) A unified genetic, computational, and experimental framework identifies noon-conserved residues as critical for function of the homing endonuclease I-BmoI. Nucleic Acids Res., 38, 2411-2427.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2411-2427
    • Kleinstiver, B.P.1    Fernandes, A.2    Gloor, G.B.3    Edgell, D.R.4
  • 39
    • 0037850968 scopus 로고    scopus 로고
    • Importance of a single base pair for discrimination between intron-containing and intronless alleles by endonuclease I-BmoI
    • Edgell, D.R., Stanger, M.J. and Belfort, M. (2003) Importance of a single base pair for discrimination between intron-containing and intronless alleles by endonuclease I-BmoI. Curr. Biol., 13, 973-978.
    • (2003) Curr. Biol. , vol.13 , pp. 973-978
    • Edgell, D.R.1    Stanger, M.J.2    Belfort, M.3
  • 41
  • 42
    • 84934444305 scopus 로고    scopus 로고
    • Rapid screening of endonuclease target site preference using a modified bacterial two-plasmid selection
    • Wolfs, J.M., Kleinstiver, B.P. and Edgell, D.R. (2014) Rapid screening of endonuclease target site preference using a modified bacterial two-plasmid selection. Methods Mol. Biol., 1123, 97-104.
    • (2014) Methods Mol. Biol. , vol.1123 , pp. 97-104
    • Wolfs, J.M.1    Kleinstiver, B.P.2    Edgell, D.R.3
  • 44
    • 0027207339 scopus 로고
    • The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target
    • Bryk, M., Quirk, S.M., Mueller, J.E., Loizos, N., Lawrence, C. and Belfort, M. (1993) The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target. EMBO J., 12, 2141-2149.
    • (1993) EMBO J. , vol.12 , pp. 2141-2149
    • Bryk, M.1    Quirk, S.M.2    Mueller, J.E.3    Loizos, N.4    Lawrence, C.5    Belfort, M.6
  • 45
    • 6244309278 scopus 로고    scopus 로고
    • Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene
    • Edgell, D.R., Stanger, M.J. and Belfort, M. (2004) Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene. J. Mol. Biol., 343, 1231-1241.
    • (2004) J. Mol. Biol. , vol.343 , pp. 1231-1241
    • Edgell, D.R.1    Stanger, M.J.2    Belfort, M.3
  • 46
    • 0028943142 scopus 로고
    • Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease
    • Bryk, M., Belisle, M., Mueller, J.E. and Belfort, M. (1995) Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease. J. Mol. Biol., 247, 197-210.
    • (1995) J. Mol. Biol. , vol.247 , pp. 197-210
    • Bryk, M.1    Belisle, M.2    Mueller, J.E.3    Belfort, M.4
  • 47
    • 0025340541 scopus 로고
    • Intron mobility in phage T4 is dependent upon a distinctive class of endonucleases and independent of DNA sequences encoding the intron core: Mechanistic and evolutionary implications
    • Bell-Pedersen, D., Quirk, S., Clyman, J. and Belfort, M. (1990) Intron mobility in phage T4 is dependent upon a distinctive class of endonucleases and independent of DNA sequences encoding the intron core: mechanistic and evolutionary implications. Nucleic Acids Res., 18, 3763-3770.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3763-3770
    • Bell-Pedersen, D.1    Quirk, S.2    Clyman, J.3    Belfort, M.4
  • 48
    • 0026772764 scopus 로고
    • Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae
    • Gimble, F.S. and Thorner, J. (1992) Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature, 357, 301-306.
    • (1992) Nature , vol.357 , pp. 301-306
    • Gimble, F.S.1    Thorner, J.2
  • 49
    • 33644756595 scopus 로고    scopus 로고
    • Homing endonuclease structure and function
    • Stoddard, B.L. (2005) Homing endonuclease structure and function. Q. Rev. Biophys., 38, 49-95.
    • (2005) Q. Rev. Biophys. , vol.38 , pp. 49-95
    • Stoddard, B.L.1
  • 50
    • 0029831039 scopus 로고    scopus 로고
    • Exon coconversion biases accompanying intron homing: Battle of the nucleases
    • Mueller, J.E., Smith, D. and Belfort, M. (1996) Exon coconversion biases accompanying intron homing: battle of the nucleases. Genes Dev., 10, 2158-2166.
    • (1996) Genes Dev. , vol.10 , pp. 2158-2166
    • Mueller, J.E.1    Smith, D.2    Belfort, M.3
  • 52
    • 0032540751 scopus 로고    scopus 로고
    • I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment
    • Argast, G.M., Stephens, K.M., Emond, M.J. and Monnat, R.J. Jr (1998) I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment. J. Mol. Biol., 280, 345-353.
    • (1998) J. Mol. Biol. , vol.280 , pp. 345-353
    • Argast, G.M.1    Stephens, K.M.2    Emond, M.J.3    Monnat Jr., R.J.4
  • 53
    • 79960343567 scopus 로고    scopus 로고
    • Regulation of endonuclease activity in human nucleotide excision repair
    • Fagbemi, A.F., Orelli, B. and Scharer, O.D. (2011) Regulation of endonuclease activity in human nucleotide excision repair. DNA Repair (Amst), 10, 722-729.
    • (2011) DNA Repair (Amst) , vol.10 , pp. 722-729
    • Fagbemi, A.F.1    Orelli, B.2    Scharer, O.D.3
  • 58
    • 84896504411 scopus 로고    scopus 로고
    • Redesign of extensive protein-DNA interfaces of meganucleases using iterative cycles of in vitro compartmentalization
    • Takeuchi, R., Choi, M. and Stoddard, B.L. (2014) Redesign of extensive protein-DNA interfaces of meganucleases using iterative cycles of in vitro compartmentalization. Proc. Natl. Acad. Sci. U.S.A., 111, 4061-4066.
    • (2014) Proc. Natl. Acad. Sci. U.S.A. , vol.111 , pp. 4061-4066
    • Takeuchi, R.1    Choi, M.2    Stoddard, B.L.3
  • 59
    • 2542455477 scopus 로고    scopus 로고
    • Distribution, sequence homology, and homing of group i introns among T-even-like bacteriophages: Evidence for recent transfer of old introns
    • Sandegren, L. and Sj öberg, B.-M. (2004) Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages: evidence for recent transfer of old introns. J. Biol. Chem., 279, 22218-22227.
    • (2004) J. Biol. Chem. , vol.279 , pp. 22218-22227
    • Sandegren, L.1    Sj Berg, Ö.B.-M.2


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