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Volumn 4, Issue 6, 2014, Pages 1155-1165

The I-TevI nuclease and linker domains contribute to the specificity of monomeric TALENs

Author keywords

Genome editing; GIY YIG nuclease; I TevI; Monomeric TALEN; TAL effector

Indexed keywords

ENDONUCLEASE; NUCLEASE; NUCLEOTIDE; SPACER DNA; TRANSCRIPTION FACTOR; TRANSCRIPTION LIKE ACTIVATOR EFFECTOR NUCLEASE; UNCLASSIFIED DRUG;

EID: 84902595538     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.114.011445     Document Type: Article
Times cited : (23)

References (43)
  • 1
    • 35349022993 scopus 로고    scopus 로고
    • A suite of Gateway cloning vectors for high-throughput genetic analysis in Saccharomyces cerevisiae
    • Alberti, S., A. D. Gitler, and S. Lindquist, 2007 A suite of Gateway cloning vectors for high-throughput genetic analysis in Saccharomyces cerevisiae. Yeast 24: 913-919.
    • (2007) Yeast , vol.24 , pp. 913-919
    • Alberti, S.1    Gitler, A.D.2    Lindquist, S.3
  • 2
  • 3
    • 0037510038 scopus 로고    scopus 로고
    • Enhancing gene targeting with designed zinc finger nucleases
    • Bibikova, M., K. Beumer, J. K. Trautman, and D. Carroll, 2003 Enhancing gene targeting with designed zinc finger nucleases. Science 300: 764.
    • (2003) Science , vol.300 , pp. 764
    • Bibikova, M.1    Beumer, K.2    Trautman, J.K.3    Carroll, D.4
  • 5
    • 72149110399 scopus 로고    scopus 로고
    • Breaking the code of DNA binding specificity of TAL-type III effectors
    • Boch, J., H. Scholze, S. Schornack, A. Landgraf, S. Hahn et al., 2009 Breaking the code of DNA binding specificity of TAL-type III effectors. Science 326: 1509-1512.
    • (2009) Science , vol.326 , pp. 1509-1512
    • Boch, J.1    Scholze, H.2    Schornack, S.3    Landgraf, A.4    Hahn, S.5
  • 6
    • 80053343092 scopus 로고    scopus 로고
    • TAL effectors: customizable proteins for DNA targeting
    • Bogdanove, A. J., and D. F. Voytas, 2011 TAL effectors: customizable proteins for DNA targeting. Science 333: 1843-1846.
    • (2011) Science , vol.333 , pp. 1843-1846
    • Bogdanove, A.J.1    Voytas, D.F.2
  • 7
    • 0028943142 scopus 로고
    • Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease
    • Bryk, M., M. Belisle, J. E. Mueller, and M. Belfort, 1995 Selection of a remote cleavage site by I-TevI, the td intron-encoded endonuclease. J. Mol. Biol. 247: 197-210.
    • (1995) J. Mol. Biol. , vol.247 , pp. 197-210
    • Bryk, M.1    Belisle, M.2    Mueller, J.E.3    Belfort, M.4
  • 8
    • 0027207339 scopus 로고
    • The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target
    • Bryk, M., S. M. Quirk, J. E. Mueller, N. Loizos, C. Lawrence et al., 1993 The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target. EMBO J. 12: 2141-2149.
    • (1993) EMBO J. , vol.12 , pp. 2141-2149
    • Bryk, M.1    Quirk, S.M.2    Mueller, J.E.3    Loizos, N.4    Lawrence, C.5
  • 9
    • 84872621523 scopus 로고    scopus 로고
    • Technology: a CRISPR genome-editing tool
    • Burgess, D. J., 2013 Technology: a CRISPR genome-editing tool. Nat. Rev. Genet. 14: 80.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 80
    • Burgess, D.J.1
  • 10
    • 78951479577 scopus 로고    scopus 로고
    • Targeting DNA double-strand breaks with TAL effector nucleases
    • Christian, M., T. Cermak, E. L. Doyle, C. Schmidt, F. Zhang et al., 2010 Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 186: 757-761.
    • (2010) Genetics , vol.186 , pp. 757-761
    • Christian, M.1    Cermak, T.2    Doyle, E.L.3    Schmidt, C.4    Zhang, F.5
  • 11
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L., F. A. Ran, D. Cox, S. Lin, R. Barretto et al., 2013 Multiplex genome engineering using CRISPR/Cas systems. Science 339: 819-823.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5
  • 12
    • 0037172989 scopus 로고    scopus 로고
    • Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI
    • USA
    • Dean, A. B., M. J. Stanger, J. T. Dansereau, P. Van Roey, V. Derbyshire et al., 2002 Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI. Proc. Natl. Acad. Sci. USA 99: 8554-8561.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 8554-8561
    • Dean, A.B.1    Stanger, M.J.2    Dansereau, J.T.3    Van Roey, P.4    Derbyshire, V.5
  • 13
    • 0031556945 scopus 로고    scopus 로고
    • Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site
    • Derbyshire, V., J. C. Kowalski, J. T. Dansereau, C. R. Hauer, and M. Belfort, 1997 Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site. J. Mol. Biol. 265: 494-506.
    • (1997) J. Mol. Biol. , vol.265 , pp. 494-506
    • Derbyshire, V.1    Kowalski, J.C.2    Dansereau, J.T.3    Hauer, C.R.4    Belfort, M.5
  • 14
    • 6244309278 scopus 로고    scopus 로고
    • Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene
    • Edgell, D. R., M. J. Stanger, and M. Belfort, 2004 Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene. J. Mol. Biol. 343: 1231-1241.
    • (2004) J. Mol. Biol. , vol.343 , pp. 1231-1241
    • Edgell, D.R.1    Stanger, M.J.2    Belfort, M.3
  • 15
    • 84896929630 scopus 로고    scopus 로고
    • Improving CRISPR-Cas nuclease specificity using truncated guide RNAs
    • Fu, Y., J. D. Sander, D. Reyon, V. M. Cascio, and J. K. Joung, 2014 Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat. Biotechnol. 32: 279-284.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 279-284
    • Fu, Y.1    Sander, J.D.2    Reyon, D.3    Cascio, V.M.4    Joung, J.K.5
  • 16
    • 80052766645 scopus 로고    scopus 로고
    • An unbiased genome-wide analysis of zinc-finger nuclease specificity
    • Gabriel, R., A. Lombardo, A. Arens, J. C. Miller, P. Genovese et al., 2011 An unbiased genome-wide analysis of zinc-finger nuclease specificity. Nat. Biotechnol. 29: 816-823.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 816-823
    • Gabriel, R.1    Lombardo, A.2    Arens, A.3    Miller, J.C.4    Genovese, P.5
  • 17
    • 79953219494 scopus 로고    scopus 로고
    • The reaction mechanism of FokI excludes the possibility of targeting zinc finger nucleases to unique DNA sites
    • Halford, S. E., L. E. Catto, C. Pernstich, D. A. Rusling, and K. L. Sanders, 2011 The reaction mechanism of FokI excludes the possibility of targeting zinc finger nucleases to unique DNA sites. Biochem. Soc. Trans. 39: 584-588.
    • (2011) Biochem. Soc. Trans. , vol.39 , pp. 584-588
    • Halford, S.E.1    Catto, L.E.2    Pernstich, C.3    Rusling, D.A.4    Sanders, K.L.5
  • 18
    • 79960836456 scopus 로고    scopus 로고
    • Genetic engineering of human pluripotent cells using TALE nucleases
    • Hockemeyer, D., H. Wang, S. Kiani, C. S. Lai, Q. Gao et al., 2011 Genetic engineering of human pluripotent cells using TALE nucleases. Nat. Biotechnol. 29: 731-734.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 731-734
    • Hockemeyer, D.1    Wang, H.2    Kiani, S.3    Lai, C.S.4    Gao, Q.5
  • 19
    • 0038947196 scopus 로고    scopus 로고
    • Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions
    • Kim, Y. G., Y. Shi, J. M. Berg, and S. Chandrasegaran, 1997 Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions. Gene 203: 43-49.
    • (1997) Gene , vol.203 , pp. 43-49
    • Kim, Y.G.1    Shi, Y.2    Berg, J.M.3    Chandrasegaran, S.4
  • 21
    • 0026511244 scopus 로고
    • Functional domains in Fok I restriction endonuclease
    • USA
    • Li, L., L. P. Wu, and S. Chandrasegaran, 1992 Functional domains in Fok I restriction endonuclease. Proc. Natl. Acad. Sci. USA 89: 4275-4279.
    • (1992) Proc. Natl. Acad. Sci. , vol.89 , pp. 4275-4279
    • Li, L.1    Wu, L.P.2    Chandrasegaran, S.3
  • 22
    • 79960034141 scopus 로고    scopus 로고
    • Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes
    • Li, T., S. Huang, X. Zhao, D. A. Wright, S. Carpenter et al., 2011 Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Nucleic Acids Res. 39: 6315-6325.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6315-6325
    • Li, T.1    Huang, S.2    Zhao, X.3    Wright, D.A.4    Carpenter, S.5
  • 23
    • 84855882014 scopus 로고    scopus 로고
    • Targeted transcriptional repression using a chimeric TALE-SRDX repressor protein
    • Mahfouz, M. M., L. Li, M. Piatek, X. Fang, H. Mansour et al., 2012 Targeted transcriptional repression using a chimeric TALE-SRDX repressor protein. Plant Mol. Biol. 78: 311-321.
    • (2012) Plant Mol. Biol. , vol.78 , pp. 311-321
    • Mahfouz, M.M.1    Li, L.2    Piatek, M.3    Fang, X.4    Mansour, H.5
  • 24
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali, P., J. Aach, P. B. Stranges, K. M. Esvelt, M. Moosburner et al., 2013a CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat. Biotechnol. 31: 833-838.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 833-838
    • Mali, P.1    Aach, J.2    Stranges, P.B.3    Esvelt, K.M.4    Moosburner, M.5
  • 25
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali, P., L. Yang, K. M. Esvelt, J. Aach, M. Guell et al., 2013b RNA-guided human genome engineering via Cas9. Science 339: 823-826.
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1    Yang, L.2    Esvelt, K.M.3    Aach, J.4    Guell, M.5
  • 26
    • 79551685675 scopus 로고    scopus 로고
    • A TALE nuclease architecture for efficient genome editing
    • Miller, J. C., S. Tan, G. Qiao, K. A. Barlow, J. Wang et al., 2011 A TALE nuclease architecture for efficient genome editing. Nat. Biotechnol. 29: 143-148.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 143-148
    • Miller, J.C.1    Tan, S.2    Qiao, G.3    Barlow, K.A.4    Wang, J.5
  • 27
    • 72149090954 scopus 로고    scopus 로고
    • A simple cipher governs DNA recognition by TAL effectors
    • Moscou, M. J., and A. J. Bogdanove, 2009 A simple cipher governs DNA recognition by TAL effectors. Science 326: 1501.
    • (2009) Science , vol.326 , pp. 1501
    • Moscou, M.J.1    Bogdanove, A.J.2
  • 28
    • 80052293623 scopus 로고    scopus 로고
    • Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection
    • Pattanayak, V., C. L. Ramirez, J. K. Joung, and D. R. Liu, 2011 Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat. Methods 8: 765-770.
    • (2011) Nat. Methods , vol.8 , pp. 765-770
    • Pattanayak, V.1    Ramirez, C.L.2    Joung, J.K.3    Liu, D.R.4
  • 29
    • 84882787078 scopus 로고    scopus 로고
    • The CRISPR craze
    • Pennisi, E., 2013 The CRISPR craze. Science 341: 833-836.
    • (2013) Science , vol.341 , pp. 833-836
    • Pennisi, E.1
  • 30
    • 0038523969 scopus 로고    scopus 로고
    • Chimeric nucleases stimulate gene targeting in human cells
    • Porteus, M. H., and D. Baltimore, 2003 Chimeric nucleases stimulate gene targeting in human cells. Science 300: 763.
    • (2003) Science , vol.300 , pp. 763
    • Porteus, M.H.1    Baltimore, D.2
  • 33
    • 84859311372 scopus 로고    scopus 로고
    • A novel zinc-finger nuclease platform with a sequence-specific cleavage module
    • Schierling, B., N. Dannemann, L. Gabsalilow, W. Wende, T. Cathomen et al., 2012 A novel zinc-finger nuclease platform with a sequence-specific cleavage module. Nucleic Acids Res. 40: 2623-2638.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 2623-2638
    • Schierling, B.1    Dannemann, N.2    Gabsalilow, L.3    Wende, W.4    Cathomen, T.5
  • 34
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider, T. D., and R. M. Stephens, 1990 Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18: 6097-6100.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 35
    • 84892765883 scopus 로고    scopus 로고
    • Genomescale CRISPR-Cas9 knockout screening in human cells
    • Shalem, O., N. E. Sanjana, E. Hartenian, X. Shi, D. A. Scott et al., 2014 Genomescale CRISPR-Cas9 knockout screening in human cells. Science 343: 84-87.
    • (2014) Science , vol.343 , pp. 84-87
    • Shalem, O.1    Sanjana, N.E.2    Hartenian, E.3    Shi, X.4    Scott, D.A.5
  • 36
    • 79958041030 scopus 로고    scopus 로고
    • Adding fingers to an engineered zinc finger nuclease can reduce activity
    • Shimizu, Y., C. Sollu, J. F. Meckler, A. Adriaenssens, A. Zykovich et al., 2011 Adding fingers to an engineered zinc finger nuclease can reduce activity. Biochemistry 50: 5033-5041.
    • (2011) Biochemistry , vol.50 , pp. 5033-5041
    • Shimizu, Y.1    Sollu, C.2    Meckler, J.F.3    Adriaenssens, A.4    Zykovich, A.5
  • 37
    • 0034283804 scopus 로고    scopus 로고
    • Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains
    • Smith, J., M. Bibikova, F. G. Whitby, A. R. Reddy, S. Chandrasegaran et al., 2000 Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains. Nucleic Acids Res. 28: 3361-3369.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3361-3369
    • Smith, J.1    Bibikova, M.2    Whitby, F.G.3    Reddy, A.R.4    Chandrasegaran, S.5
  • 38
    • 84893517311 scopus 로고    scopus 로고
    • A single-chain TALEN architecture for genome engineering
    • Sun, N., and H. Zhao, 2014 A single-chain TALEN architecture for genome engineering. Mol. Biosyst. 10: 446-453.
    • (2014) Mol. Biosyst. , vol.10 , pp. 446-453
    • Sun, N.1    Zhao, H.2
  • 39
    • 34447323568 scopus 로고    scopus 로고
    • Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
    • Szczepek, M., V. Brondani, J. Buchel, L. Serrano, D. J. Segal et al., 2007 Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nat. Biotechnol. 25: 786-793.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 786-793
    • Szczepek, M.1    Brondani, V.2    Buchel, J.3    Serrano, L.4    Segal, D.J.5
  • 40
    • 80051964399 scopus 로고    scopus 로고
    • Tapping natural reservoirs of homing endonucleases for targeted gene modification
    • USA
    • Takeuchi, R., A. R. Lambert, A. N. Mak, K. Jacoby, R. J. Dickson et al., 2011 Tapping natural reservoirs of homing endonucleases for targeted gene modification. Proc. Natl. Acad. Sci. USA 108: 13077-13082.
    • (2011) Proc. Natl. Acad. Sci. , vol.108 , pp. 13077-13082
    • Takeuchi, R.1    Lambert, A.R.2    Mak, A.N.3    Jacoby, K.4    Dickson, R.J.5
  • 41
    • 66249093890 scopus 로고    scopus 로고
    • High-frequency modification of plant genes using engineered zinc-finger nucleases
    • Townsend, J. A., D. A. Wright, R. J. Winfrey, F. Fu, M. L. Maeder et al., 2009 High-frequency modification of plant genes using engineered zinc-finger nucleases. Nature 459: 442-445.
    • (2009) Nature , vol.459 , pp. 442-445
    • Townsend, J.A.1    Wright, D.A.2    Winfrey, R.J.3    Fu, F.4    Maeder, M.L.5
  • 42
    • 0035898540 scopus 로고    scopus 로고
    • Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate
    • Van Roey, P., C. A. Waddling, K. M. Fox, M. Belfort, and V. Derbyshire, 2001 Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate. EMBO J. 20: 3631-3637.
    • (2001) EMBO J. , vol.20 , pp. 3631-3637
    • Van Roey, P.1    Waddling, C.A.2    Fox, K.M.3    Belfort, M.4    Derbyshire, V.5
  • 43
    • 33745894351 scopus 로고    scopus 로고
    • Os8N3 is a host disease-susceptibility gene for bacterial blight of rice
    • USA
    • Yang, B., A. Sugio, and F. F. White, 2006 Os8N3 is a host disease-susceptibility gene for bacterial blight of rice. Proc. Natl. Acad. Sci. USA 103: 10503-10508.
    • (2006) Proc. Natl. Acad. Sci. , vol.103 , pp. 10503-10508
    • Yang, B.1    Sugio, A.2    White, F.F.3


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