-
1
-
-
0028174310
-
How does a protein fold?
-
DOI 10.1038/369248a0
-
Sali A, Shakhnovich E, Karplus M (1994) How does a protein fold? Nature 369: 248-251. (Pubitemid 24154805)
-
(1994)
Nature
, vol.369
, Issue.6477
, pp. 248-251
-
-
Sali, A.1
Shakhnovich, E.2
Karplus, M.3
-
3
-
-
84883190318
-
Under-folded proteins: Conformational ensembles and their roles in protein folding, function and pathogenesis
-
Uversky VN (2013) Under-folded proteins: Conformational ensembles and their roles in protein folding, function and pathogenesis. Biopolymers 99: 870-887
-
(2013)
Biopolymers
, vol.99
, pp. 870-887
-
-
Uversky, V.N.1
-
4
-
-
0019332167
-
How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
-
Lesk AM, Chothia C (1980) How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J Mol Biol 136(3): 225-70.
-
(1980)
J Mol Biol
, vol.136
, Issue.3
, pp. 225-270
-
-
Lesk, A.M.1
Chothia, C.2
-
5
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia C, Lesk AM (1986) The relation between the divergence of sequence and structure in proteins. EMBO J 5(4): 823-826.
-
(1986)
EMBO J
, vol.5
, Issue.4
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
7
-
-
33645811495
-
Protein stability promotes evolvability
-
Bloom JD, Labthavikul ST, Otey CR, Arnold FH (2006) Protein stability promotes evolvability. Proc. Natl. Acad. Sci. USA 103(15): 5869-5874.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, Issue.15
, pp. 5869-5874
-
-
Bloom, J.D.1
Labthavikul, S.T.2
Otey, C.R.3
Arnold, F.H.4
-
9
-
-
84860741240
-
Engineering the third wave of biocatalysis
-
Bornscheuer UT, Huisman GW, Kazlauskas RJ, Lutz S, Moore JC, et al. (2012) Engineering the third wave of biocatalysis. Nature 485: 185-194.
-
(2012)
Nature
, vol.485
, pp. 185-194
-
-
Bornscheuer, U.T.1
Huisman, G.W.2
Kazlauskas, R.J.3
Lutz, S.4
Moore, J.C.5
-
10
-
-
0028896311
-
A relationship between protein stability and protein function
-
Shoichet BK, Baase WA, Kuroki R, Matthews BW (1995) A relationship between protein stability and protein function. Proc. Natl. Acad. Sci. USA 92(2): 452-456.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, Issue.2
, pp. 452-456
-
-
Shoichet, B.K.1
Baase, W.A.2
Kuroki, R.3
Matthews, B.W.4
-
11
-
-
0036384211
-
Structural bases of stability-function tradeoffs in enzymes
-
Beadle BM, Shoichet BK (2002) Structural bases of stability-function tradeoffs in enzymes. J Mol Biol 321(2): 285-296.
-
(2002)
J Mol Biol
, vol.321
, Issue.2
, pp. 285-296
-
-
Beadle, B.M.1
Shoichet, B.K.2
-
12
-
-
84887030986
-
Introduction-Principles and Historical Landmarks of Enzyme Catalysis in Organic Synthesis
-
Drauz K, Gröger H, May O, editors. Weinheim: Wiley-VCH
-
Gröger H, Asano Y (2012) Introduction-Principles and Historical Landmarks of Enzyme Catalysis in Organic Synthesis. In: Drauz K, Gröger H, May O, editors. Enzyme Catalysis in Organic Synthesis, Third Edition. Weinheim: Wiley-VCH. pp.1-42
-
(2012)
Enzyme Catalysis in Organic Synthesis, Third Edition
, pp. 1-42
-
-
Gröger, H.1
Asano, Y.2
-
13
-
-
0030220763
-
Engineering enzymes for stability
-
DOI 10.1016/S0959-440X(96)80122-9
-
Shaw A, Bott R (1996) Engineering enzymes for stability. Curr Opin Struct Biol 6(4): 546-550. (Pubitemid 26315851)
-
(1996)
Current Opinion in Structural Biology
, vol.6
, Issue.4
, pp. 546-550
-
-
Shaw, A.1
Bott, R.2
-
14
-
-
4544244867
-
Rational engineering of enzyme stability
-
DOI 10.1016/j.jbiotec.2004.03.026, PII S0168165604003098
-
Eijsink VG, Bjørk A, Gåseidnes S, Sirevåg R, Synstad B, et al. (2004) Rational engineering of enzyme stability. J Biotechnol 113(1): 105-120. (Pubitemid 39237074)
-
(2004)
Journal of Biotechnology
, vol.113
, Issue.1-3
, pp. 105-120
-
-
Eijsink, V.G.H.1
Bjork, A.2
Gaseidnes, S.3
Sirevag, R.4
Synstad, B.5
Burg, B.V.D.6
Vriend, G.7
-
15
-
-
18044369861
-
Directed evolution of enzyme stability
-
DOI 10.1016/j.bioeng.2004.12.003, Directed Enzyme Evolution
-
Eijsink VG, Gåseidnes S, Borchert TV, van den Burg B (2005) Directed evolution of enzyme stability. Biomol Eng 22(1): 21-30. (Pubitemid 40602590)
-
(2005)
Biomolecular Engineering
, vol.22
, Issue.1-3
, pp. 21-30
-
-
Eijsink, V.G.H.1
GAseidnes, S.2
Borchert, T.V.3
Van Den, B.B.4
-
16
-
-
50849139867
-
Enzyme stability and stabilization - aqueous and non-aqueous environment
-
Iyer PV, Ananthanarayan L (2008) Enzyme stability and stabilization - aqueous and non-aqueous environment. Process Biochem 43(10): 1019-1032.
-
(2008)
Process Biochem
, vol.43
, Issue.10
, pp. 1019-1032
-
-
Iyer, P.V.1
Ananthanarayan, L.2
-
17
-
-
79952199938
-
Engineering protein stability
-
O'Fagain C (2011) Engineering protein stability. Methods Mol. Biol 681: 103-136.
-
(2011)
Methods Mol. Biol
, vol.681
, pp. 103-136
-
-
O'Fagain, C.1
-
19
-
-
0037255422
-
Biotechnological applications of penicillin acylases: State-of-the-art
-
Arroyo M, De la Mata I, Acebal C, Castillón MP (2003) Biotechnological applications of penicillin acylases: state-of-the-art. Appl Microbiol Biotechnol 60(5): 507-514. (Pubitemid 36169524)
-
(2003)
Applied Microbiology and Biotechnology
, vol.60
, Issue.5
, pp. 507-514
-
-
Arroyo, M.1
De La, M.I.2
Acebal, C.3
Castillon, M.P.4
-
20
-
-
0028857547
-
Penicillin acylase has a single-amino-acid catalytic centre
-
Duggleby HJ, Tolley SP, Hill CP, Dodson EJ, Dodson G, et al. (1995) Penicillin acylase has a single-amino-acid catalytic centre. Nature 373: 264-268
-
(1995)
Nature
, vol.373
, pp. 264-268
-
-
Duggleby, H.J.1
Tolley, S.P.2
Hill, C.P.3
Dodson, E.J.4
Dodson, G.5
-
21
-
-
0035806466
-
Highly efficient and enantioselective enzymatic acylation of amines in aqueous medium
-
DOI 10.1016/S0957-4166(01)00263-4, PII S0957416601002634
-
Guranda DT, van Langen LM, van Rantwijk F, Sheldon RA, Švedas VK (2001) Highly efficient and enantioselective enzymatic acylation of amines in aqueous medium. Tetrahedron Asymmetry 12(11): 1645-1650. (Pubitemid 32728151)
-
(2001)
Tetrahedron Asymmetry
, vol.12
, Issue.11
, pp. 1645-1650
-
-
Guranda, D.T.1
Van Langen, L.M.2
Van Rantwijk, F.3
Sheldon, R.A.4
Svedas, V.K.5
-
22
-
-
4644225294
-
An 'easy-on, easy-off' protecting group for the enzymatic resolution of (±)-1-phenylethylamine in an aqueous medium
-
DOI 10.1016/j.tetasy.2004.06.051, PII S0957416604005786, Integrating Biocatalysis into Organic Syntheses
-
Guranda DT, Khimiuk AI, van Langen LM, van Rantwijk F, Sheldon RA, et al. (2004) An 'easy-on, easy-off' protecting group for the enzymatic resolution of (±)-1-phenylethylamine in an aqueous medium. Tetrahedron Asymmetry 15(18): 2901-2906. (Pubitemid 39278026)
-
(2004)
Tetrahedron Asymmetry
, vol.15
, Issue.18
, pp. 2901-2906
-
-
Guranda, D.T.1
Khimiuk, A.I.2
Van Langen, L.M.3
Van Rantwijk, F.4
Sheldon, R.A.5
Svedas, V.K.6
-
23
-
-
80054898670
-
Penicillin Acylase-Catalyzed Effective and Stereoselective Acylation of 1-phenylethylamine in Aqueous Medium using Non-Activated Acyl Donor
-
Guranda DT, Ushakov GA, Švedas VK (2010) Penicillin Acylase-Catalyzed Effective and Stereoselective Acylation of 1-phenylethylamine in Aqueous Medium using Non-Activated Acyl Donor. Acta Naturae 2(1): 94-96.
-
(2010)
Acta Naturae
, vol.2
, Issue.1
, pp. 94-96
-
-
Guranda, D.T.1
Ushakov, G.A.2
Švedas, V.K.3
-
24
-
-
0042832897
-
Resolution of (RS)-phenylglycinonitrile by penicillin acylase-catalyzed acylation in aqueous medium
-
DOI 10.1016/S0957-4166(03)00523-8
-
Chilov GG, Moody HM, Boesten WH, Švedas VK (2003) Resolution of (RS)-phenylglycinonitrile by penicillin acylase-catalyzed acylation in aqueous medium. Tetrahedron Asymmetry 14(17): 2613-2617. (Pubitemid 37093880)
-
(2003)
Tetrahedron Asymmetry
, vol.14
, Issue.17
, pp. 2613-2617
-
-
Chilov, G.G.1
Moody, H.M.2
Boesten, W.H.J.3
Svedas, V.K.4
-
25
-
-
41549144816
-
A green, fully enzymatic procedure for amine resolution, using a lipase and a penicillin G acylase
-
DOI 10.1039/b714088f
-
Ismail H, Lau RM, van Langen LM, van Rantwijk F, Švedas VK, et al. (2008) A green, fully enzymatic procedure for amine resolution, using a lipase and a penicillin G acylase. Green Chemistry 10(4): 415-418. (Pubitemid 351466546)
-
(2008)
Green Chemistry
, vol.10
, Issue.4
, pp. 415-418
-
-
Ismail, H.1
Lau, R.M.2
Van Langen, L.M.3
Van Rantwijk, F.4
Svedas, V.K.5
Sheldon, R.A.6
-
26
-
-
0027179354
-
Enzymatic preparation of both L- and D-enantiomers of phosphonic and phosphonous analogues of alanine using penicillin acylase
-
DOI 10.1016/S0957-4166(00)82240-5
-
Solodenko VA, Belik MY, Galushko SV, Kukhar VP, Kozlova EV, et al. (1993) Enzymatic preparation of both L-and D-enantiomers of phosphonic and phosphonous analogues of alanine using penicillin acylase. Tetrahedron Asymmetry 4(9): 1965-1968. (Pubitemid 23281244)
-
(1993)
Tetrahedron Asymmetry
, vol.4
, Issue.9
, pp. 1965-1968
-
-
Solodenko, V.A.1
Belik, M.Y.2
Galushko, S.V.3
Kukhar, V.P.4
Kozlova, E.V.5
Mironenko, D.A.6
Svedas, V.K.7
-
27
-
-
0001534452
-
Biomimetic Transamination of α-Alkyl β-Keto Carboxylic Esters. Chemoenzymatic Approach to the Stereochemically Defined α-Alkyl β-Fluoroalkyl β-Amino Acids
-
Soloshonok VA, Soloshonok IV, Kukhar VP, Švedas VK (1998) Biomimetic Transamination of α-Alkyl β-Keto Carboxylic Esters. Chemoenzymatic Approach to the Stereochemically Defined α-Alkyl β-Fluoroalkyl β-Amino Acids. J Org Chem 63(6): 1878-1884. (Pubitemid 128499819)
-
(1998)
Journal of Organic Chemistry
, vol.63
, Issue.6
, pp. 1878-1884
-
-
Soloshonok, V.A.1
Soloshonok, I.V.2
Kukhar, V.P.3
Svedas, V.K.4
-
28
-
-
84857880335
-
Improving the Diastereoselectivity of Penicillin G Acylase for Ampicillin Synthesis from Racemic Substrates
-
Deaguero AL, Blum JK, Bommarius AS (2012) Improving the Diastereoselectivity of Penicillin G Acylase for Ampicillin Synthesis from Racemic Substrates. Protein Eng Des Sel 25(3): 135-144.
-
(2012)
Protein Eng des Sel
, vol.25
, Issue.3
, pp. 135-144
-
-
Deaguero, A.L.1
Blum, J.K.2
Bommarius, A.S.3
-
30
-
-
84988097419
-
Soluble-insoluble immobilized enzymes
-
Margolin AL, Izumrudov VA, Švedas VK, Zezin AB (1982) Soluble-insoluble immobilized enzymes. Biotechnol Bioeng 24(1): 237-240.
-
(1982)
Biotechnol Bioeng
, vol.24
, Issue.1
, pp. 237-240
-
-
Margolin, A.L.1
Izumrudov, V.A.2
Švedas, V.K.3
Zezin, A.B.4
-
31
-
-
0035988032
-
Penicillin G acylase - Fatty lipid biocomposite films show excellent catalytic activity and long term stability/reusability
-
DOI 10.1021/bp015504v
-
Phadtare S, Parekh P, Gole A, Patil M, Pundle A, et al. (2002) Penicillin G Acylase-Fatty Lipid Biocomposite Films Show Excellent Catalytic Activity and Long Term Stability/Reusability. Biotechnol Prog 18(3): 483-488. (Pubitemid 34623222)
-
(2002)
Biotechnology Progress
, vol.18
, Issue.3
, pp. 483-488
-
-
Phadtare, S.1
Parekh, P.2
Gole, A.3
Patil, M.4
Pundle, A.5
Prabhune, A.6
Sastry, M.7
-
32
-
-
0030185060
-
Novel crystalline catalysts
-
Margolin AL (1996) Novel crystalline catalysts. Trends Biotechnol 14(7): 223-230.
-
(1996)
Trends Biotechnol
, vol.14
, Issue.7
, pp. 223-230
-
-
Margolin, A.L.1
-
33
-
-
20544476972
-
Immobilization of penicillin G acylase: The key to optimum performance
-
DOI 10.1002/adsc.200505042
-
Kallenberg AI, van Rantwijk F, Sheldon RA (2005) Immobilization of penicillin G acylase: the key to optimum performance. Adv Synth Catal 347(7-8): 905-926. (Pubitemid 40846447)
-
(2005)
Advanced Synthesis and Catalysis
, vol.347
, Issue.7-8
, pp. 905-926
-
-
Kallenberg, A.I.1
Van Rantwijk, F.2
Sheldon, R.A.3
-
34
-
-
58249132554
-
Quantitative characteristic of the catalytic properties and microstructure of cross-linked enzyme aggregates of penicillin acylase
-
Pchelintsev NA, Youshko MI, Švedas VK (2009) Quantitative characteristic of the catalytic properties and microstructure of cross-linked enzyme aggregates of penicillin acylase. J Mol Catal B Enzym 56(4): 202-207.
-
(2009)
J Mol Catal B Enzym
, vol.56
, Issue.4
, pp. 202-207
-
-
Pchelintsev, N.A.1
Youshko, M.I.2
Švedas, V.K.3
-
35
-
-
0034274420
-
Eupergit C, a carrier for immobilization of enzymes of industrial potential
-
DOI 10.1016/S1381-1177(00)00124-7, PII S1381117700001247
-
Katchalski-Katzir E, Kraemer DM (2000) Eupergit C, a carrier for immobilization of enzymes of industrial potential. J Mol Catal B Enzym 10(1): 157-176. (Pubitemid 30479832)
-
(2000)
Journal of Molecular Catalysis - B Enzymatic
, vol.10
, Issue.1-3
, pp. 157-176
-
-
Katchalski-Katzir, E.1
Kraemer, D.M.2
-
36
-
-
0035988098
-
Epoxy Sepabeads: A novel epoxy support for stabilization of industrial enzymes via very intense multipoint covalent attachment
-
DOI 10.1021/bp010171n
-
Mateo C, Abian O, Fernández-Lorente G, Pedroche J, Fernández-Lafuente R, et al. (2002) Epoxy Sepabeads: A novel epoxy support for stabilization of industrial enzymes via very intense multipoint covalent attachment. Biotechnol Prog 18(3): 629-634. (Pubitemid 34623239)
-
(2002)
Biotechnology Progress
, vol.18
, Issue.3
, pp. 629-634
-
-
Mateo, C.1
Abian, O.2
Fernandez-Lorente, G.3
Pedroche, J.4
Fernandez-Lafuente, R.5
Guisan, J.M.6
Tam, A.7
Daminati, M.8
-
37
-
-
34547143840
-
In silico analysis of enzyme surface and glycosylation effect as a tool for efficient covalent immobilisation of CalB and PGA on Sepabeads
-
Basso A, Braiuca P, Cantone S, Ebert C, Linda P, et al. (2007) In silico analysis of enzyme surface and glycosylation effect as a tool for efficient covalent immobilisation of CalB and PGA on Sepabeads. Adv Synth Catal 349(6): 877-886.
-
(2007)
Adv Synth Catal
, vol.349
, Issue.6
, pp. 877-886
-
-
Basso, A.1
Braiuca, P.2
Cantone, S.3
Ebert, C.4
Linda, P.5
-
38
-
-
0035931596
-
w
-
DOI 10.1016/S1381-1177(00)00070-9, PII S1381117700000709
-
Basso A, De Martin L, Ebert C, Gardossi L, Linda P, et al. (2001) Activity of covalently immobilised PGA in water miscible solvents at controlled aw. J Mol Catal B Enzym 11(4): 851-855. (Pubitemid 32114270)
-
(2001)
Journal of Molecular Catalysis - B Enzymatic
, vol.11
, Issue.4-6
, pp. 851-855
-
-
Basso, A.1
De Martin, L.2
Ebert, C.3
Gardossi, L.4
Linda, P.5
Zlatev, V.6
-
40
-
-
0029380383
-
Mutant Escherichia coli penicillin acylase with enhanced stability at alkaline pH
-
del Rio G, Rodríguez ME, Munguía ME, LóPez- Munguí A, Soberón X (1995) Mutant Escherichia coli penicillin acylase with enhanced stability at alkaline pH. Biotechnol Bioeng 48(2): 141-148.
-
(1995)
Biotechnol Bioeng
, vol.48
, Issue.2
, pp. 141-148
-
-
Del Rio, G.1
Rodríguez, M.E.2
Munguía, M.E.3
LóPez- Munguí, A.4
Soberón, X.5
-
41
-
-
33751253539
-
Structure-guided consensus approach to create a more thermostable penicillin G acylase
-
Polizzi KM, Chaparro-Riggers JF, Vazquez-Figueroa E, Bommarius AS (2006) Structure-guided consensus approach to create a more thermostable penicillin G acylase. J Biotechnol 1(5): 531-536.
-
(2006)
J Biotechnol
, vol.1
, Issue.5
, pp. 531-536
-
-
Polizzi, K.M.1
Chaparro-Riggers, J.F.2
Vazquez-Figueroa, E.3
Bommarius, A.S.4
-
42
-
-
85047694896
-
pH stability of penicillin acylase from escherichia coli
-
DOI 10.1007/s10541-005-0010-x, 10
-
Guranda DT, Volovik TS, Švedas VK (2004) pH stability of penicillin acylase from Escherichia coli. Biochem (Mosc) 69(12): 1386-1390. (Pubitemid 40329548)
-
(2004)
Biochemistry (Moscow)
, vol.69
, Issue.12
, pp. 1386-1390
-
-
Guranda, D.T.1
Volovik, T.S.2
Svedas, V.K.3
-
43
-
-
0001050205
-
Improvement in the alkaline stability of subtilisin using an efficient random mutagenesis and screening procedure
-
Cunningham BC, Wells JA (1987) Improvement in the alkaline stability of subtilisin using an efficient random mutagenesis and screening procedure. Protein Eng 1(4): 319-325. (Pubitemid 18024008)
-
(1987)
Protein Engineering
, vol.1
, Issue.4
, pp. 319-325
-
-
Cunningham, B.C.1
Wells, J.A.2
-
44
-
-
0141858719
-
Directed evolution of a bacterial α-amylase: Toward enhanced pH-performance and higher specific activity
-
DOI 10.1110/ps.0384403
-
Bessler C, Schmitt J, Maurer KH, Schmid RD (2003) Directed evolution of a bacterial α-amylase: Toward enhanced pH-performance and higher specific activity. Protein science 12(10): 2141-2149. (Pubitemid 37163349)
-
(2003)
Protein Science
, vol.12
, Issue.10
, pp. 2141-2149
-
-
Bessler, C.1
Schmitt, J.2
Maurer, K.-H.3
Schmid, R.D.4
-
45
-
-
43849110605
-
Engineering endoglucanase II from Trichoderma reesei to improve the catalytic efficiency at a higher pH optimum
-
Qin Y, Wei X, Song X, Qu Y (2008) Engineering endoglucanase II from Trichoderma reesei to improve the catalytic efficiency at a higher pH optimum. J Biotechnol 135(2): 190-195.
-
(2008)
J Biotechnol
, vol.135
, Issue.2
, pp. 190-195
-
-
Qin, Y.1
Wei, X.2
Song, X.3
Qu, Y.4
-
46
-
-
61449128254
-
Error-prone PCR of a fungal xylanase for improvement of its alkaline and thermal stability
-
Stephens DE, Singh S, Permaul K (2009) Error-prone PCR of a fungal xylanase for improvement of its alkaline and thermal stability. FEMS Microbiol Lett 293(1): 42-47.
-
(2009)
FEMS Microbiol Lett
, vol.293
, Issue.1
, pp. 42-47
-
-
Stephens, D.E.1
Singh, S.2
Permaul, K.3
-
47
-
-
84865289946
-
Improvement of the acid stability of Bacillus licheniformis alpha amylase by error-prone PCR
-
Liu YH, Hu B, Xu YJ, Bo JX, Fan S, et al. (2012) Improvement of the acid stability of Bacillus licheniformis alpha amylase by error-prone PCR. J Appl Microbiol 113(3): 541-549.
-
(2012)
J Appl Microbiol
, vol.113
, Issue.3
, pp. 541-549
-
-
Liu, Y.H.1
Hu, B.2
Xu, Y.J.3
Bo, J.X.4
Fan, S.5
-
48
-
-
0025327584
-
Protein stability and electrostatic interactions between solvent exposed charged side chains
-
DOI 10.1002/prot.340080106
-
Akke M, Forsén S (1990) Protein stability and electrostatic interactions between solvent exposed charged side chains. Proteins 8(1): 23-29 (Pubitemid 20235329)
-
(1990)
Proteins: Structure, Function and Genetics
, vol.8
, Issue.1
, pp. 23-29
-
-
Akke, M.1
Forsen, S.2
-
49
-
-
0030840103
-
High-resolution crystal structure of M-protease: Phylogeny aided analysis of the high-alkaline adaptation mechanism
-
Shirai T, Suzuki A, Yamane T, Ashida T, Kobayashi T, et al. (1997) High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism. Protein Eng 10(6): 627-634. (Pubitemid 27332069)
-
(1997)
Protein Engineering
, vol.10
, Issue.6
, pp. 627-634
-
-
Shirai, T.1
Suzuki, A.2
Yamane, T.3
Ashida, T.4
Kobayashi, T.5
Hitomi, J.6
Ito, S.7
-
50
-
-
0035958721
-
Crystal structure of alkaline cellulase K: Insight into the alkaline adaptation of an industrial enzyme
-
DOI 10.1006/jmbi.2001.4835
-
Shirai T, Ishida H, Noda JI, Yamane T, Ozaki K, et al. (2001) Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme. J Mol Biol 310(5): 1079-1087. (Pubitemid 32738379)
-
(2001)
Journal of Molecular Biology
, vol.310
, Issue.5
, pp. 1079-1087
-
-
Shirai, T.1
Ishida, H.2
Noda, J.-I.3
Yamane, T.4
Ozaki, K.5
Hakamada, Y.6
Ito, S.7
-
51
-
-
0032407988
-
Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: Biased distribution of acidic residues and importance of Asp37 for catalysis at low pH
-
Fushinobu S, Ito K, Konno M, Wakagi T, Matsuzawa H (1998) Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH. Protein Eng 11(12): 1121-1128. (Pubitemid 29012122)
-
(1998)
Protein Engineering
, vol.11
, Issue.12
, pp. 1121-1128
-
-
Fushinobu, S.1
Ito, K.2
Konno, M.3
Wakagi, T.4
Matsuzawa, H.5
-
52
-
-
18044366388
-
Directed evolution for engineering pH profile of endoglucanase III from Trichoderma reesei
-
DOI 10.1016/j.bioeng.2004.10.003, Directed Enzyme Evolution
-
Wang T, Liu X, Yu Q, Zhang X, Qu Y, et al. (2005) Directed evolution for engineering pH profile of endoglucanase III from Trichoderma reesei. Biomol Eng 22(1): 89-94. (Pubitemid 40602598)
-
(2005)
Biomolecular Engineering
, vol.22
, Issue.1-3
, pp. 89-94
-
-
Wang, T.1
Liu, X.2
Yu, Q.3
Zhang, X.4
Qu, Y.5
Gao, P.6
Wang, T.7
-
53
-
-
66049105477
-
Rational pH-engineering of the thermostable xylanase based on computational model
-
Liu L, Wang B, Chen H, Wang S, Wang M, et al. (2009) Rational pH-engineering of the thermostable xylanase based on computational model. Process Biochem 44(8): 912-915.
-
(2009)
Process Biochem
, vol.44
, Issue.8
, pp. 912-915
-
-
Liu, L.1
Wang, B.2
Chen, H.3
Wang, S.4
Wang, M.5
-
54
-
-
84875092633
-
Structure-based engineering of histidine residues in the catalytic domain of α-amylase from Bacillus subtilis for improved protein stability and catalytic efficiency under acidic conditions
-
Yang H, Liu L, Shin HD, Chen RR, Li J, et al. (2013) Structure-based engineering of histidine residues in the catalytic domain of α-amylase from Bacillus subtilis for improved protein stability and catalytic efficiency under acidic conditions. J Biotechnol 164(1): 59-66
-
(2013)
J Biotechnol
, vol.164
, Issue.1
, pp. 59-66
-
-
Yang, H.1
Liu, L.2
Shin, H.D.3
Chen, R.R.4
Li, J.5
-
55
-
-
0037117592
-
Protein deamidation
-
Robinson NE (2002) Protein deamidation. Proc Natl Acad Sci U S A 99(8): 5283-5288.
-
(2002)
Proc Natl Acad Sci U S a
, vol.99
, Issue.8
, pp. 5283-5288
-
-
Robinson, N.E.1
-
56
-
-
0037412172
-
Engineering streptococcal protein G for increased alkaline stability
-
Gülich S, Linhult M, Ståhl S, Hober S (2002) Engineering streptococcal protein G for increased alkaline stability. Protein Eng 15(10) 835-842. (Pubitemid 36050064)
-
(2002)
Protein Engineering
, vol.15
, Issue.10
, pp. 835-842
-
-
Gulich, S.1
Linhult, M.2
Stahl, S.3
Hober, S.4
-
57
-
-
41549104499
-
Design of stability at extreme alkaline pH in streptococcal protein G
-
Palmer B, Angus K, Taylor L, Warwicker J, Derrick JP (2008) Design of stability at extreme alkaline pH in streptococcal protein G. J Biotechnol 134(3): 222-230.
-
(2008)
J Biotechnol
, vol.134
, Issue.3
, pp. 222-230
-
-
Palmer, B.1
Angus, K.2
Taylor, L.3
Warwicker, J.4
Derrick, J.P.5
-
58
-
-
76849098696
-
Computational design-based molecular engineering of the glycosyl hydrolase family 11 B. Subtilis XynA endoxylanase improves its acid stability
-
Beliën T, Joye IJ, Delcour JA, Courtin CM (2009) Computational design-based molecular engineering of the glycosyl hydrolase family 11 B. subtilis XynA endoxylanase improves its acid stability. Protein Eng Des Sel 22(10): 587-596.
-
(2009)
Protein Eng des Sel
, vol.22
, Issue.10
, pp. 587-596
-
-
Beliën, T.1
Joye, I.J.2
Delcour, J.A.3
Courtin, C.M.4
-
59
-
-
84876974824
-
Alkalophilic adaptation of XynB endoxylanase from Aspergillus niger via rational design of pKa of catalytic residues
-
Xu H, Zhang F, Shang H, Li X, Wang J, et al. (2013) Alkalophilic adaptation of XynB endoxylanase from Aspergillus niger via rational design of pKa of catalytic residues. J Biosci Bioeng 115(6): 618-622
-
(2013)
J Biosci Bioeng
, vol.115
, Issue.6
, pp. 618-622
-
-
Xu, H.1
Zhang, F.2
Shang, H.3
Li, X.4
Wang, J.5
-
60
-
-
74549207309
-
Assessing computational methods for predicting protein stability upon mutation: Good on average but not in the details
-
Potapov V, Cohen M, Schreiber G (2009) Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details. Protein Eng Des Sel 22(9): 553-560.
-
(2009)
Protein Eng des Sel
, vol.22
, Issue.9
, pp. 553-560
-
-
Potapov, V.1
Cohen, M.2
Schreiber, G.3
-
61
-
-
77952706843
-
Performance of protein stability predictors
-
Khan S, Vihinen M (2010) Performance of protein stability predictors. Hum Mutat 31(6): 675-684.
-
(2010)
Hum Mutat
, vol.31
, Issue.6
, pp. 675-684
-
-
Khan, S.1
Vihinen, M.2
-
62
-
-
0027231258
-
On the pH dependence of protein stability
-
Yang AS, Honig B (1993) On the pH dependence of protein stability. J Mol Biol 231(2): 459.
-
(1993)
J Mol Biol
, vol.231
, Issue.2
, pp. 459
-
-
Yang, A.S.1
Honig, B.2
-
63
-
-
0024792699
-
Genetic analysis of protein stability and function
-
Pakula AA, Sauer RT (1989) Genetic analysis of protein stability and function. Annu Rev Genet 23(1): 289-310. (Pubitemid 20033405)
-
(1989)
Annual Review of Genetics
, vol.23
, pp. 289-310
-
-
Pakula, A.A.1
Sauer, R.T.2
-
64
-
-
0027255479
-
Structural and genetic analysis of protein stability
-
Matthews BW (1993) Structural and genetic analysis of protein stability. Annu Rev Biochem 62(1): 139-160.
-
(1993)
Annu Rev Biochem
, vol.62
, Issue.1
, pp. 139-160
-
-
Matthews, B.W.1
-
65
-
-
0035850792
-
Crystal structures of penicillin acylase enzyme-substrate complexes: Structural insights into the catalytic mechanism
-
DOI 10.1006/jmbi.2001.5043
-
McVey CE, Walsh MA, Dodson GG, Wilson KS, Brannigan JA (2001) Crystal structures of penicillin acylase enzyme-substrate complexes: structural insights into the catalytic mechanism. J Mol Biol 313(1): 139-150. (Pubitemid 33001171)
-
(2001)
Journal of Molecular Biology
, vol.313
, Issue.1
, pp. 139-150
-
-
McVey, C.E.1
Walsh, M.A.2
Dodson, G.G.3
Wilson, K.S.4
Brannigan, J.A.5
-
66
-
-
84876578144
-
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
-
Sillitoe I, Cuff AL, Dessailly BH, Dawson NL, Furnham N, et al. (2013) New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Res 41(D1): D490-D498.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.D1
-
-
Sillitoe, I.1
Cuff, A.L.2
Dessailly, B.H.3
Dawson, N.L.4
Furnham, N.5
-
67
-
-
0034495297
-
Structural comparison of Ntn-hydrolases
-
Oinonen C, Rouvinen J (2000) Structural comparison of Ntn-hydrolases. Protein Science 9(12): 2329-2337. (Pubitemid 32105715)
-
(2000)
Protein Science
, vol.9
, Issue.12
, pp. 2329-2337
-
-
Oinonen, C.1
Rouvinen, J.2
-
68
-
-
84889688951
-
Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity
-
Suplatov D, Shalaeva D, Kirilin E, Arzhanik V, Švedas V (2014) Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity. J Biomol Struct Dyn 32(1): 75-87.
-
(2014)
J Biomol Struct Dyn
, vol.32
, Issue.1
, pp. 75-87
-
-
Suplatov, D.1
Shalaeva, D.2
Kirilin, E.3
Arzhanik, V.4
Švedas, V.5
-
69
-
-
84868572912
-
Bioinformatic analysis of alpha/beta-hydrolase fold enzymes reveals subfamily-specific positions responsible for discrimination of amidase and lipase activities
-
Suplatov DA, Besenmatter W, Švedas VK, Svendsen A (2012) Bioinformatic analysis of alpha/beta-hydrolase fold enzymes reveals subfamily-specific positions responsible for discrimination of amidase and lipase activities. Protein Eng Des Sel 25(11): 689-697.
-
(2012)
Protein Eng des Sel
, vol.25
, Issue.11
, pp. 689-697
-
-
Suplatov, D.A.1
Besenmatter, W.2
Švedas, V.K.3
Svendsen, A.4
-
70
-
-
41949127851
-
Thermodynamic and kinetic stability of penicillin acylase from Escherichia coli
-
Grinberg VY, Burova TV, Grinberg NV, Shcherbakova TA, Guranda DT (2008) Thermodynamic and kinetic stability of penicillin acylase from Escherichia coli. Biochim Biophys Acta 1784(5): 736-746.
-
(2008)
Biochim Biophys Acta
, vol.1784
, Issue.5
, pp. 736-746
-
-
Grinberg, V.Y.1
Burova, T.V.2
Grinberg, N.V.3
Shcherbakova, T.A.4
Guranda, D.T.5
-
71
-
-
0037154980
-
Protein folding and unfolding at atomic resolution
-
Fersht AR, Daggett V (2002) Protein folding and unfolding at atomic resolution. Cell 108(4): 573.
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 573
-
-
Fersht, A.R.1
Daggett, V.2
-
72
-
-
0036725277
-
Molecular dynamics simulations of biomolecules
-
DOI 10.1038/nsb0902-646
-
Karplus M, McCammon JA (2002) Molecular dynamics simulations of biomolecules. Nat Struct Mol Biol 9(9): 646-652. (Pubitemid 34977295)
-
(2002)
Nature Structural Biology
, vol.9
, Issue.9
, pp. 646-652
-
-
Karplus, M.1
McCammon, J.A.2
-
73
-
-
40449100818
-
Modeling structure and flexibility of Candida antarctica lipase B in organic solvents
-
Trodler P, Pleiss J (2008) Modeling structure and flexibility of Candida antarctica lipase B in organic solvents. BMC Struct Biol 8(1): 9.
-
(2008)
BMC Struct Biol
, vol.8
, Issue.1
, pp. 9
-
-
Trodler, P.1
Pleiss, J.2
-
74
-
-
78349281122
-
Solvent-induced lid opening in lipases: A molecular dynamics study
-
Rehm S, Trodler P, Pleiss J (2010) Solvent-induced lid opening in lipases: A molecular dynamics study. Protein Science 19(11): 2122-2130.
-
(2010)
Protein Science
, vol.19
, Issue.11
, pp. 2122-2130
-
-
Rehm, S.1
Trodler, P.2
Pleiss, J.3
-
75
-
-
84874640883
-
Rational Design of Enzymes
-
Drauz K, Gröger H, May O, editors. Weinheim: Wiley-VCH
-
Pleiss J (2012) Rational Design of Enzymes. In: Drauz K, Gröger H, May O, editors. Enzyme Catalysis in Organic Synthesis, Third Edition. Weinheim: Wiley-VCH. pp.89-117
-
(2012)
Enzyme Catalysis in Organic Synthesis, Third Edition
, pp. 89-117
-
-
Pleiss, J.1
-
76
-
-
0020476552
-
Carboxyl-carboxylate interactions in proteins
-
Sawyer L, James MN (1982) Carboxyl-carboxylate interactions in proteins. Nature 295: 79-80
-
(1982)
Nature
, vol.295
, pp. 79-80
-
-
Sawyer, L.1
James, M.N.2
-
77
-
-
0042324606
-
Probing pH-dependent functional elements in proteins: Modification of carboxylic acid pairs in Trichoderma reesei cellobiohydrolase ce16A
-
DOI 10.1021/bi034954o
-
Wohlfahrt G, Pellikka T, Boer H, Teeri TT, Koivula A (2003) Probing pH-dependent functional elements in proteins: modification of carboxylic acid pairs in Trichoderma reesei cellobiohydrolase Cel6A. Biochemistry 42(34): 10095-10103. (Pubitemid 37052029)
-
(2003)
Biochemistry
, vol.42
, Issue.34
, pp. 10095-10103
-
-
Wohlfahrt, G.1
Pellikka, T.2
Boer, H.3
Teeri, T.T.4
Koivula, A.5
-
78
-
-
23044435317
-
Statistical and molecular dynamics studies of buried waters in globular proteins
-
DOI 10.1002/prot.20511
-
Park S, Saven JG (2005) Statistical and molecular dynamics studies of buried waters in globular proteins. Proteins 60(3): 450-463. (Pubitemid 41061638)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.60
, Issue.3
, pp. 450-463
-
-
Park, S.1
Saven, J.G.2
-
80
-
-
0030853283
-
Kinetic study of penicillin acylase from Alcaligenes faecalis
-
DOI 10.1016/S0014-5793(97)01289-1, PII S0014579397012891
-
Švedas V, Guranda D, van Langen L, van Rantwijk F, Sheldon R (1997) Kinetic study of penicillin acylase from Alcaligenes faecalis. FEBS Lett 417(3): 414-418. (Pubitemid 27511634)
-
(1997)
FEBS Letters
, vol.417
, Issue.3
, pp. 414-418
-
-
Svedas, V.1
Guranda, D.2
Van Langen, L.3
Van Rantwijk, F.4
Sheldon, R.5
-
81
-
-
11244281311
-
The evolvability of promiscuous protein functions
-
Aharoni A, Gaidukov L, Khersonsky O, Gould SM, Roodveldt C, et al. (2004) The evolvability of promiscuous protein functions. Nat Genet 37(1): 73-76.
-
(2004)
Nat Genet
, vol.37
, Issue.1
, pp. 73-76
-
-
Aharoni, A.1
Gaidukov, L.2
Khersonsky, O.3
Gould, S.M.4
Roodveldt, C.5
-
83
-
-
0027441807
-
Step-wise mutation of barnase to binase. A procedure for engineering increased stability of proteins and an experimental analysis of the evolution of protein stability
-
DOI 10.1006/jmbi.1993.1508
-
Serrano L, Day AG, Fersht AR (1993) Step-wise mutation of barnase to binase: a procedure for engineering increased stability of proteins and an experimental analysis of the evolution of protein stability. J Mol Biol 233(2): 305-312. (Pubitemid 23297599)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.2
, pp. 305-312
-
-
Serrano, L.1
Day, A.G.2
Fersht, A.R.3
-
84
-
-
0032430395
-
Totally enzymatic synthesis of peptides. Penicillin acylase-catalyzed protection and deprotection of amino groups as important building blocks of this strategy
-
DOI 10.1111/j.1749-6632.1998.tb10373.x
-
Švedas VK, Beltser AI (1998) Totally Enzymatic Synthesis of Peptides: Penicillin Acylase-Catalyzed Protection and Deprotection of Amino Groups as Important Building Blocks of This Strategy. Ann N Y Acad Sci 864(1): 524-527. (Pubitemid 29048181)
-
(1998)
Annals of the New York Academy of Sciences
, vol.864
, pp. 524-527
-
-
Svedas, V.K.1
Beltser, A.I.2
-
85
-
-
0346199337
-
Enantioselective acylation of chiral amines catalysed by serine hydrolases
-
van Rantwijk F, Sheldon RA (2004) Enantioselective acylation of chiral amines catalysed by serine hydrolases. Tetrahedron 60(3): 501-519.
-
(2004)
Tetrahedron
, vol.60
, Issue.3
, pp. 501-519
-
-
Van Rantwijk, F.1
Sheldon, R.A.2
-
86
-
-
17044422037
-
Biomolecular simulations at constant pH
-
Mongan J, Case DA (2005) Biomolecular simulations at constant pH. Curr Opin Struct Biol 15(2): 157-163.
-
(2005)
Curr Opin Struct Biol
, vol.15
, Issue.2
, pp. 157-163
-
-
Mongan, J.1
Case, D.A.2
-
87
-
-
34249930405
-
Protein-folding dynamics: Overview of molecular simulation techniques
-
DOI 10.1146/annurev.physchem.58.032806.104614
-
Scheraga HA, Khalili M, Liwo A. (2007) Protein-folding dynamics: overview of molecular simulation techniques. Annu Rev Phys Chem 58: 57-83. (Pubitemid 46877585)
-
(2007)
Annual Review of Physical Chemistry
, vol.58
, pp. 57-83
-
-
Scheraga, H.A.1
Khalili, M.2
Liwo, A.3
-
88
-
-
9244223045
-
Constant pH molecular dynamics in generalized Born implicit solvent
-
Mongan J, Case DA, McCammon JA (2004) Constant pH molecular dynamics in generalized Born implicit solvent. J Comp Chem 25(16): 2038-2048.
-
(2004)
J Comp Chem
, vol.25
, Issue.16
, pp. 2038-2048
-
-
Mongan, J.1
Case, D.A.2
McCammon, J.A.3
-
89
-
-
0036968512
-
Increasing temperature accelerates protein unfolding without changing the pathway of unfolding
-
DOI 10.1016/S0022-2836(02)00672-1
-
Day R, Bennion BJ, Ham S, Daggett V (2002) Increasing temperature accelerates protein unfolding without changing the pathway of unfolding. J Mol Biol 322(1): 189-203. (Pubitemid 36132678)
-
(2002)
Journal of Molecular Biology
, vol.322
, Issue.1
, pp. 189-203
-
-
Day, R.1
Bennion, B.J.2
Ham, S.3
Daggett, V.4
-
91
-
-
70349932423
-
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
-
Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, et al. (2009) AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J Comput Chem 30(16): 2785-2791.
-
(2009)
J Comput Chem
, vol.30
, Issue.16
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
-
93
-
-
70349448250
-
Computing and visualizing dynamic time warping alignments in R: The dtw package
-
Giorgino T (2009) Computing and visualizing dynamic time warping alignments in R: the dtw package. J Stat Softw 31(7): 1-24.
-
(2009)
J Stat Softw
, vol.31
, Issue.7
, pp. 1-24
-
-
Giorgino, T.1
-
94
-
-
29844433160
-
-
A thesis presented to the University of Waterloo in fulfillment of the thesis requirement for the degree of Doctor of Philosophy in Computer Science
-
Chen L (2005) Similarity Search Over Time Series and Trajectory Data. A thesis presented to the University of Waterloo in fulfillment of the thesis requirement for the degree of Doctor of Philosophy in Computer Science.
-
(2005)
Similarity Search over Time Series and Trajectory Data
-
-
Chen, L.1
-
95
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, et al. (2005) Scalable molecular dynamics with NAMD. J Comput Chem 26(16): 1781-1802. (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
96
-
-
84872008300
-
Molecular modeling of different substrate-binding modes and their role in penicillin acylase catalysis
-
Novikov FN, Stroganov OV, Khaliullin IG, Panin NV, Shapovalova IV, et al. (2013) Molecular modeling of different substrate-binding modes and their role in penicillin acylase catalysis. FEBS J 280(1): 115-126.
-
(2013)
FEBS J
, vol.280
, Issue.1
, pp. 115-126
-
-
Novikov, F.N.1
Stroganov, O.V.2
Khaliullin, I.G.3
Panin, N.V.4
Shapovalova, I.V.5
-
97
-
-
34547559704
-
PDB2PQR: Expanding and upgrading automated preparation of biomolecular structures for molecular simulations
-
Dolinsky TJ, Czodrowski P, Li H, Nielsen JE, Jensen JH, et al. (2007) PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res (suppl 2): W522-W525.
-
(2007)
Nucleic Acids Res
, Issue.SUPPL. 2
-
-
Dolinsky, T.J.1
Czodrowski, P.2
Li, H.3
Nielsen, J.E.4
Jensen, J.H.5
-
99
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
DOI 10.1107/S0907444904026460
-
Krissinel E, Henrick K (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D Biol Crystallogr 60(12): 2256-2268. (Pubitemid 41742778)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12 I
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
100
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(17): 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
101
-
-
40049091146
-
Prediction of protein functional residues from sequence by probability density estimation
-
DOI 10.1093/bioinformatics/btm626
-
Fischer JD, Mayer CE, Söding J (2008) Prediction of protein functional residues from sequence by probability density estimation. Bioinformatics 24(5): 613-20 (Pubitemid 351321204)
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 613-620
-
-
Fischer, J.D.1
Mayer, C.E.2
Soding, J.3
-
102
-
-
38949150854
-
Matt: Local flexibility aids protein multiple structure alignment
-
Menke M, Berger B, Cowen L (2008) Matt: local flexibility aids protein multiple structure alignment. PLoS Comput Biol 4(1): e10.
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.1
-
-
Menke, M.1
Berger, B.2
Cowen, L.3
-
103
-
-
80054796108
-
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
-
Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, et al. (2011) Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures. Nat Protoc 6(11): 1669-1682.
-
(2011)
Nat Protoc
, vol.6
, Issue.11
, pp. 1669-1682
-
-
Taly, J.F.1
Magis, C.2
Bussotti, G.3
Chang, J.M.4
Di Tommaso, P.5
-
104
-
-
84905680227
-
Zebra: Web-server for bioinformatic analysis of diverse protein families
-
in press, DOI:10.1080/07391102.2013.834514
-
Suplatov D, Kirilin E, Takhaveev V, Švedas V (2013). Zebra: web-server for bioinformatic analysis of diverse protein families, J Biomol Struct Dyn, in press, DOI:10.1080/07391102.2013.834514
-
(2013)
J Biomol Struct Dyn
-
-
Suplatov, D.1
Kirilin, E.2
Takhaveev, V.3
Švedas, V.4
-
105
-
-
84872021257
-
Cloning of penicillin acylase from Escherichia coli. Catalytic properties of recombinant enzymes
-
Jasnaya AS, Jamskova OV, Guranda DT, Shcherbakova TA, Tishkov VI, et al. (2008) Cloning of penicillin acylase from Escherichia coli. Catalytic properties of recombinant enzymes. Moscow University Chemistry Bulletin 49(2): 127.
-
(2008)
Moscow University Chemistry Bulletin
, vol.49
, Issue.2
, pp. 127
-
-
Jasnaya, A.S.1
Jamskova, O.V.2
Guranda, D.T.3
Shcherbakova, T.A.4
Tishkov, V.I.5
-
106
-
-
77949659317
-
Guidelines for reporting of biocatalytic reactions
-
Gardossi L, Poulsen PB, Ballesteros A, Hult K, Švedas VK., et al. (2010) Guidelines for reporting of biocatalytic reactions. Trends Biotechnol 28(4): 171-180.
-
(2010)
Trends Biotechnol
, vol.28
, Issue.4
, pp. 171-180
-
-
Gardossi, L.1
Poulsen, P.B.2
Ballesteros, A.3
Hult, K.4
Švedas, V.K.5
-
107
-
-
0000702781
-
Inactivation of soluble and immobilized penicillin amidase from E. Coli by phenylmethylsulfonylfluoride, kinetic analysis and titration of enzyme active sites
-
Švedas VK, Margolin AL, Sherstiuk SF, Klyosov AA, Berezin IV (1977) Inactivation of soluble and immobilized penicillin amidase from E. coli by phenylmethylsulfonylfluoride, kinetic analysis and titration of enzyme active sites. Bioorg. Khimiya (Russ.) 3: 546-553.
-
(1977)
Bioorg. Khimiya (Russ.)
, vol.3
, pp. 546-553
-
-
Švedas, V.K.1
Margolin, A.L.2
Sherstiuk, S.F.3
Klyosov, A.A.4
Berezin, I.V.5
-
108
-
-
84874597624
-
Practice of "Lomonosov" Supercomputer
-
Voevodin Vl.V, Zhumatiy SA, Sobolev SI, Antonov AS, Bryzgalov PA, et al. (2012) Practice of "Lomonosov" Supercomputer. Open Systems J. (Russ.) 7: 36-39
-
(2012)
Open Systems J. (Russ.)
, vol.7
, pp. 36-39
-
-
Voevodin, Vl.V.1
Zhumatiy, S.A.2
Sobolev, S.I.3
Antonov, A.S.4
Bryzgalov, P.A.5
|