메뉴 건너뛰기




Volumn 164, Issue 1, 2013, Pages 59-66

Structure-based engineering of histidine residues in the catalytic domain of α-amylase from Bacillus subtilis for improved protein stability and catalytic efficiency under acidic conditions

Author keywords

Acidic stability; Bacillus subtilis amylase; Site directed mutagenesis; Structure model

Indexed keywords

ACIDIC CONDITIONS; ACIDIC STABILITIES; BACILLUS SUBTILIS; CATALYTIC EFFICIENCIES; HISTIDINE RESIDUES; SITE DIRECTED MUTAGENESIS; STRUCTURE MODELS; THREE-DIMENSIONAL STRUCTURE;

EID: 84875092633     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2012.12.007     Document Type: Article
Times cited : (68)

References (27)
  • 1
    • 79551613290 scopus 로고    scopus 로고
    • Toward the estimation of the absolute quality of individual protein structure models
    • Benkert P., Biasini M., Schwede T. Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics 2011, 27:343-350.
    • (2011) Bioinformatics , vol.27 , pp. 343-350
    • Benkert, P.1    Biasini, M.2    Schwede, T.3
  • 2
    • 0141858719 scopus 로고    scopus 로고
    • Directed evolution of a bacterial α-amylase: toward enhanced pH-performance and higher specific activity
    • Bessler C., Schmitt J., Maurer K.H., Schmid R.D. Directed evolution of a bacterial α-amylase: toward enhanced pH-performance and higher specific activity. Protein Science 2003, 12:2141-2149.
    • (2003) Protein Science , vol.12 , pp. 2141-2149
    • Bessler, C.1    Schmitt, J.2    Maurer, K.H.3    Schmid, R.D.4
  • 3
    • 69449095076 scopus 로고    scopus 로고
    • A single intersubunit salt bridge affects oligomerization and catalytic activity in a bacterial quinone reductase
    • Binter A., Staunig N., Jelesarov I., Lohner K., Palfey B.A., Deller S., Gruber K., Macheroux P. A single intersubunit salt bridge affects oligomerization and catalytic activity in a bacterial quinone reductase. FEBS Journal 2009, 276:5263-5274.
    • (2009) FEBS Journal , vol.276 , pp. 5263-5274
    • Binter, A.1    Staunig, N.2    Jelesarov, I.3    Lohner, K.4    Palfey, B.A.5    Deller, S.6    Gruber, K.7    Macheroux, P.8
  • 5
    • 0029645404 scopus 로고
    • Structures and mechanisms of glycosyl hydrolases
    • Davies G., Henrissat B. Structures and mechanisms of glycosyl hydrolases. Structure 1995, 3:853-859.
    • (1995) Structure , vol.3 , pp. 853-859
    • Davies, G.1    Henrissat, B.2
  • 6
    • 0031813124 scopus 로고    scopus 로고
    • Protein engineering of Aspergillus awamori glucoamylase to increase its pH optimum
    • Fang T.Y., Ford C. Protein engineering of Aspergillus awamori glucoamylase to increase its pH optimum. Protein Engineering 1998, 11:383-388.
    • (1998) Protein Engineering , vol.11 , pp. 383-388
    • Fang, T.Y.1    Ford, C.2
  • 7
    • 0027441547 scopus 로고
    • Misuse of graphical analysis in nonlinear sugar transport kinetics by Eadie-Hofstee plots
    • Fuhrmann G.F., Völker B. Misuse of graphical analysis in nonlinear sugar transport kinetics by Eadie-Hofstee plots. Biochimica et Biophysica Acta (BBA)-Biomembranes 1993, 1145:180-182.
    • (1993) Biochimica et Biophysica Acta (BBA)-Biomembranes , vol.1145 , pp. 180-182
    • Fuhrmann, G.F.1    Völker, B.2
  • 8
    • 33645811843 scopus 로고
    • A new method for microdetermination of amylase activity by the use of amylose as the substrate
    • Fuwa H. A new method for microdetermination of amylase activity by the use of amylose as the substrate. Journal of Biochemistry 1954, 41:583-603.
    • (1954) Journal of Biochemistry , vol.41 , pp. 583-603
    • Fuwa, H.1
  • 9
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling
    • Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling. Electrophoresis 1997, 18:2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 10
    • 0026744021 scopus 로고
    • Catalytic center of cyclodextrin glycosyltransferase derived from X-ray structure analysis combined with site-directed mutagenesis
    • Klein C., Hollender J., Bender H., Schulz G.E. Catalytic center of cyclodextrin glycosyltransferase derived from X-ray structure analysis combined with site-directed mutagenesis. Biochemistry 1992, 31:8740-8746.
    • (1992) Biochemistry , vol.31 , pp. 8740-8746
    • Klein, C.1    Hollender, J.2    Bender, H.3    Schulz, G.E.4
  • 12
    • 84865289946 scopus 로고    scopus 로고
    • Improvement of the acid stability of Bacillus licheniformis alpha amylase by error-prone PCR
    • Liu, Y.H., Hu, B., Xu, Y.J., Bo, J.X., Fan, S., Wang, J.L., Lu, F.P., 2012. Improvement of the acid stability of Bacillus licheniformis alpha amylase by error-prone PCR. Journal of Applied Microbiology. doi:10.1111/j.1365-2672.2012.05359.x.
    • (2012) Journal of Applied Microbiology
    • Liu, Y.H.1    Hu, B.2    Xu, Y.J.3    Bo, J.X.4    Fan, S.5    Wang, J.L.6    Lu, F.P.7
  • 13
    • 51849110672 scopus 로고    scopus 로고
    • Acid stabilization of Bacillus licheniformis alpha amylase through introduction of mutations
    • Liu Y.H., Lu F.P., Li Y., Wang J.L., Gao C. Acid stabilization of Bacillus licheniformis alpha amylase through introduction of mutations. Applied Microbiology and Biotechnology 2008, 80:795-803.
    • (2008) Applied Microbiology and Biotechnology , vol.80 , pp. 795-803
    • Liu, Y.H.1    Lu, F.P.2    Li, Y.3    Wang, J.L.4    Gao, C.5
  • 14
    • 38349097073 scopus 로고    scopus 로고
    • Characterisation of mutagenised acid-resistant alpha-amylase expressed in Bacillus subtilis WB600
    • Liu Y.H., Lu F.P., Li Y., Yin X.B., Wang Y., Gao C. Characterisation of mutagenised acid-resistant alpha-amylase expressed in Bacillus subtilis WB600. Applied Microbiology and Biotechnology 2008, 78:85-94.
    • (2008) Applied Microbiology and Biotechnology , vol.78 , pp. 85-94
    • Liu, Y.H.1    Lu, F.P.2    Li, Y.3    Yin, X.B.4    Wang, Y.5    Gao, C.6
  • 15
    • 84989152232 scopus 로고
    • Relationships between structure and activity in the α-amylase family of starch-metabolising enzymes
    • MacGregor E. Relationships between structure and activity in the α-amylase family of starch-metabolising enzymes. Starch/Stärke 1993, 45:232-237.
    • (1993) Starch/Stärke , vol.45 , pp. 232-237
    • MacGregor, E.1
  • 16
    • 0037837789 scopus 로고    scopus 로고
    • Kinetic stabilization of Bacillus licheniformis α-amylase through introduction of hydrophobic residues at the surface
    • Machius M., Declerck N., Huber R., Wiegand G. Kinetic stabilization of Bacillus licheniformis α-amylase through introduction of hydrophobic residues at the surface. Journal of Biological Chemistry 2003, 278:11546-11553.
    • (2003) Journal of Biological Chemistry , vol.278 , pp. 11546-11553
    • Machius, M.1    Declerck, N.2    Huber, R.3    Wiegand, G.4
  • 20
    • 0028198814 scopus 로고
    • The active center of a mammalian. α-amylase. Structure of the complex of a pancreatic α-amylase with a carbohydrate inhibitor refined to 2.2-Å resolution
    • Qian M., Haser R., Buisson G., Duee E., Payan F. The active center of a mammalian. α-amylase. Structure of the complex of a pancreatic α-amylase with a carbohydrate inhibitor refined to 2.2-Å resolution. Biochemistry 1994, 33:6284-6294.
    • (1994) Biochemistry , vol.33 , pp. 6284-6294
    • Qian, M.1    Haser, R.2    Buisson, G.3    Duee, E.4    Payan, F.5
  • 22
    • 0028961637 scopus 로고
    • X-ray structure of cyclodextrin glycosyltransferase complexed with acarbose. Implications for the catalytic mechanism of glycosidases
    • Strokopytov B., Penninga D., Rozeboom H.J., Kalk K.H., Dijkhuizen L., Dijkstra B.W. X-ray structure of cyclodextrin glycosyltransferase complexed with acarbose. Implications for the catalytic mechanism of glycosidases. Biochemistry 1995, 34:2234-2240.
    • (1995) Biochemistry , vol.34 , pp. 2234-2240
    • Strokopytov, B.1    Penninga, D.2    Rozeboom, H.J.3    Kalk, K.H.4    Dijkhuizen, L.5    Dijkstra, B.W.6
  • 23
    • 0028429952 scopus 로고
    • Protein engineering in the α-amylase family: catalytic mechanism, substrate specificity, and stability
    • Svensson B. Protein engineering in the α-amylase family: catalytic mechanism, substrate specificity, and stability. Plant Molecular Biology 1994, 25:141-157.
    • (1994) Plant Molecular Biology , vol.25 , pp. 141-157
    • Svensson, B.1
  • 24
    • 0032489385 scopus 로고    scopus 로고
    • Engineering of cyclodextrin product specificity and pH optima of the thermostable cyclodextrin glycosyltransferase from Thermoanaerobacterium thermosulfurigenes EM1
    • Wind R.D., Uitdehaag J., Buitelaar R.M., Dijkstra B.W., Dijkhuizen L. Engineering of cyclodextrin product specificity and pH optima of the thermostable cyclodextrin glycosyltransferase from Thermoanaerobacterium thermosulfurigenes EM1. Journal of Biological Chemistry 1998, 273:5771-5779.
    • (1998) Journal of Biological Chemistry , vol.273 , pp. 5771-5779
    • Wind, R.D.1    Uitdehaag, J.2    Buitelaar, R.M.3    Dijkstra, B.W.4    Dijkhuizen, L.5
  • 26
    • 56449093034 scopus 로고    scopus 로고
    • Glu88 in the non-catalytic domain of acyipeptide hydrolase plays dual roles: charge neutralization for enzymatic activity and formation of saft bridge for thermodynamic stability
    • Yang G.Y., Bai A.X., Gao L., Zhang Z.M., Zheng B.S., Feng Y. Glu88 in the non-catalytic domain of acyipeptide hydrolase plays dual roles: charge neutralization for enzymatic activity and formation of saft bridge for thermodynamic stability. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2009, 1794:94-102.
    • (2009) Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics , vol.1794 , pp. 94-102
    • Yang, G.Y.1    Bai, A.X.2    Gao, L.3    Zhang, Z.M.4    Zheng, B.S.5    Feng, Y.6
  • 27
    • 84871621530 scopus 로고    scopus 로고
    • Cloning, heterologous expression, and comparative characterization of a mesophilic α-amylase gene from Bacillus subtilis JN16 in Escherichia coli
    • Yang H.Q., Liu L., Li J.H., Du G.C., Chen J. Cloning, heterologous expression, and comparative characterization of a mesophilic α-amylase gene from Bacillus subtilis JN16 in Escherichia coli. Annals of Microbiology 2012, 62:1219-1226.
    • (2012) Annals of Microbiology , vol.62 , pp. 1219-1226
    • Yang, H.Q.1    Liu, L.2    Li, J.H.3    Du, G.C.4    Chen, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.