-
1
-
-
0034910795
-
Transcription of glycolytic genes and operons in Bacillus subtilis: Evidence for the presence of multiple levels of control of the gapA operon
-
11489127
-
Ludwig H, Homuth G, Schmalisch M, Dyka FM, Hecker M, Stulke J (2001) Transcription of glycolytic genes and operons in Bacillus subtilis: evidence for the presence of multiple levels of control of the gapA operon. Mol Microbiol 41:409-422
-
(2001)
Mol Microbiol
, vol.41
, pp. 409-422
-
-
Ludwig, H.1
Homuth, G.2
Schmalisch, M.3
Dyka, F.M.4
Hecker, M.5
Stulke, J.6
-
2
-
-
11144357990
-
Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes
-
15060025
-
Mäder U, Hennig S, Hecker M, Homuth G (2004) Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes. J Bacteriol 186:2240-2252
-
(2004)
J Bacteriol
, vol.186
, pp. 2240-2252
-
-
Mäder, U.1
Hennig, S.2
Hecker, M.3
Homuth, G.4
-
3
-
-
84865555082
-
RNase y of Staphylococcus aureus and its role in the activation of virulence genes
-
22780584
-
Marincola G, Schafer T, Behler J, Bernhardt J, Ohlsen K, Goerke C, Wolz C (2012) RNase Y of Staphylococcus aureus and its role in the activation of virulence genes. Mol Microbiol 85:817-832
-
(2012)
Mol Microbiol
, vol.85
, pp. 817-832
-
-
Marincola, G.1
Schafer, T.2
Behler, J.3
Bernhardt, J.4
Ohlsen, K.5
Goerke, C.6
Wolz, C.7
-
4
-
-
0030049484
-
Mutations affecting mRNA processing and fimbrial biogenesis in the Escherichia coli pap operon
-
8550500
-
Nilsson P, Naureckiene S, Uhlin BE (1996) Mutations affecting mRNA processing and fimbrial biogenesis in the Escherichia coli pap operon. J Bacteriol 178:683-690
-
(1996)
J Bacteriol
, vol.178
, pp. 683-690
-
-
Nilsson, P.1
Naureckiene, S.2
Uhlin, B.E.3
-
5
-
-
64049090242
-
Killer and protective ribosomes
-
19215779
-
Dreyfus M (2009) Killer and protective ribosomes. Prog Mol Biol Transl Sci 85:423-466
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 423-466
-
-
Dreyfus, M.1
-
6
-
-
0026564641
-
Control of functional RNA stability in bacteria: Multiple mechanisms of nucleolytic and non-nucleolytic inactivation
-
1372674
-
Petersen C (1992) Control of functional RNA stability in bacteria: multiple mechanisms of nucleolytic and non-nucleolytic inactivation. Mol Microbiol 6:277-282
-
(1992)
Mol Microbiol
, vol.6
, pp. 277-282
-
-
Petersen, C.1
-
7
-
-
0035919778
-
The relationship between translational control and mRNA degradation for the Escherichia coli threonyl-tRNA synthetase gene
-
11453682
-
Nogueira T, de Smit M, Graffe M, Springer M (2001) The relationship between translational control and mRNA degradation for the Escherichia coli threonyl-tRNA synthetase gene. J Mol Biol 310:709-722
-
(2001)
J Mol Biol
, vol.310
, pp. 709-722
-
-
Nogueira, T.1
De Smit, M.2
Graffe, M.3
Springer, M.4
-
8
-
-
84928856412
-
Small regulatory RNAs (sRNAs): Key players in prokaryotic metabolism, stress response, and virulence
-
B. Mallick Z. Ghosh (eds) Springer Berlin, Heidelberg
-
Brantl S (2012) Small regulatory RNAs (sRNAs): Key players in prokaryotic metabolism, stress response, and virulence. In: Mallick B, Ghosh Z (eds) Regulatory RNAs, vol 4. Springer, Berlin, Heidelberg, pp 73-109
-
(2012)
Regulatory RNAs, Vol 4
, pp. 73-109
-
-
Brantl, S.1
-
9
-
-
84875457350
-
Bacterial small RNA-based negative regulation: Hfq and its accomplices
-
23362267
-
De Lay N, Schu DJ, Gottesman S (2013) Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem 288:7996-8003
-
(2013)
J Biol Chem
, vol.288
, pp. 7996-8003
-
-
De Lay, N.1
Schu, D.J.2
Gottesman, S.3
-
10
-
-
1542267833
-
Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
-
14981237
-
Bernstein JA, Lin PH, Cohen SN, Lin-Chao S (2004) Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. Proc Natl Acad Sci USA 101:2758-2763
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 2758-2763
-
-
Bernstein, J.A.1
Lin, P.H.2
Cohen, S.N.3
Lin-Chao, S.4
-
11
-
-
0033048415
-
The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
-
10411735
-
Lopez PJ, Marchand I, Joyce SA, Dreyfus M (1999) The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol Microbiol 33:188-199
-
(1999)
Mol Microbiol
, vol.33
, pp. 188-199
-
-
Lopez, P.J.1
Marchand, I.2
Joyce, S.A.3
Dreyfus, M.4
-
12
-
-
0035168335
-
Autoregulation allows Escherichia coli RNase e to adjust continuously its synthesis to that of its substrates
-
11722748
-
Sousa S, Marchand I, Dreyfus M (2001) Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates. Mol Microbiol 42:867-878
-
(2001)
Mol Microbiol
, vol.42
, pp. 867-878
-
-
Sousa, S.1
Marchand, I.2
Dreyfus, M.3
-
13
-
-
0026008229
-
The Ams (altered mRNA stability) protein and ribonuclease e are encoded by the same structural gene of Escherichia coli
-
1846032
-
Babitzke P, Kushner SR (1991) The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli. Proc Natl Acad Sci USA 88:1-5
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 1-5
-
-
Babitzke, P.1
Kushner, S.R.2
-
14
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
12119387
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci USA 99:9697-9702
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
15
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
-
12566399
-
Selinger DW, Saxena RM, Cheung KJ, Church GM, Rosenow C (2003) Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. Genome Res 13:216-223
-
(2003)
Genome Res
, vol.13
, pp. 216-223
-
-
Selinger, D.W.1
Saxena, R.M.2
Cheung, K.J.3
Church, G.M.4
Rosenow, C.5
-
16
-
-
17844361922
-
Ribonucleases J1 and J2: Two novel endoribonucleases in B subtilis with functional homology to E coli RNase e
-
15831787
-
Even S, Pellegrini O, Zig L, Labas V, Vinh J, Brechemmier-Baey D, Putzer H (2005) Ribonucleases J1 and J2: two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase E. Nucleic Acids Res 33:2141-2152
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2141-2152
-
-
Even, S.1
Pellegrini, O.2
Zig, L.3
Labas, V.4
Vinh, J.5
Brechemmier-Baey, D.6
Putzer, H.7
-
17
-
-
0042330135
-
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs
-
12884008
-
Hambraeus G, von Wachenfeldt C, Hederstedt L (2003) Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs. Mol Genet Genomics: MGG 269:706-714
-
(2003)
Mol Genet Genomics: MGG
, vol.269
, pp. 706-714
-
-
Hambraeus, G.1
Von Wachenfeldt, C.2
Hederstedt, L.3
-
18
-
-
0030002447
-
Properties of a Bacillus subtilis polynucleotide phosphorylase deletion strain
-
8636041
-
Wang W, Bechhofer DH (1996) Properties of a Bacillus subtilis polynucleotide phosphorylase deletion strain. J Bacteriol 178:2375-2382
-
(1996)
J Bacteriol
, vol.178
, pp. 2375-2382
-
-
Wang, W.1
Bechhofer, D.H.2
-
19
-
-
33645210668
-
Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives
-
16547047
-
Roberts C, Anderson KL, Murphy E, Projan SJ, Mounts W, Hurlburt B, Smeltzer M, Overbeek R, Disz T, Dunman PM (2006) Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives. J Bacteriol 188:2593-2603
-
(2006)
J Bacteriol
, vol.188
, pp. 2593-2603
-
-
Roberts, C.1
Anderson, K.L.2
Murphy, E.3
Projan, S.J.4
Mounts, W.5
Hurlburt, B.6
Smeltzer, M.7
Overbeek, R.8
Disz, T.9
Dunman, P.M.10
-
20
-
-
84877943060
-
Multiple roles of RNase y in Streptococcus pyogenes mRNA processing and degradation
-
23543715
-
Chen Z, Itzek A, Malke H, Ferretti JJ, Kreth J (2013) Multiple roles of RNase Y in Streptococcus pyogenes mRNA processing and degradation. J Bacteriol 195:2585-2594
-
(2013)
J Bacteriol
, vol.195
, pp. 2585-2594
-
-
Chen, Z.1
Itzek, A.2
Malke, H.3
Ferretti, J.J.4
Kreth, J.5
-
21
-
-
27744606973
-
Role of mRNA stability during genome-wide adaptation of Lactococcus lactis to carbon starvation
-
16131490
-
Redon E, Loubiere P, Cocaign-Bousquet M (2005) Role of mRNA stability during genome-wide adaptation of Lactococcus lactis to carbon starvation. J Biol Chem 280:36380-36385
-
(2005)
J Biol Chem
, vol.280
, pp. 36380-36385
-
-
Redon, E.1
Loubiere, P.2
Cocaign-Bousquet, M.3
-
22
-
-
84871731081
-
Global analysis of mRNA stability in Mycobacterium tuberculosis
-
23125364
-
Rustad TR, Minch KJ, Brabant W, Winkler JK, Reiss DJ, Baliga NS, Sherman DR (2013) Global analysis of mRNA stability in Mycobacterium tuberculosis. Nucleic Acids Res 41:509-517
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 509-517
-
-
Rustad, T.R.1
Minch, K.J.2
Brabant, W.3
Winkler, J.K.4
Reiss, D.J.5
Baliga, N.S.6
Sherman, D.R.7
-
23
-
-
77952311196
-
Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus
-
20482874
-
Steglich C, Lindell D, Futschik M, Rector T, Steen R, Chisholm SW (2010) Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus. Genome Biol 11:R54
-
(2010)
Genome Biol
, vol.11
, pp. 54
-
-
Steglich, C.1
Lindell, D.2
Futschik, M.3
Rector, T.4
Steen, R.5
Chisholm, S.W.6
-
24
-
-
80052722697
-
MRNA degradation and maturation in prokaryotes: The global players
-
Laalami S, Putzer H (2011) mRNA degradation and maturation in prokaryotes: the global players. Biomol Concepts 2:491-506
-
(2011)
Biomol Concepts
, vol.2
, pp. 491-506
-
-
Laalami, S.1
Putzer, H.2
-
25
-
-
0017887243
-
A conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA
-
342528
-
Apirion D, Lassar AB (1978) A conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA. J Biol Chem 253:1738-1742
-
(1978)
J Biol Chem
, vol.253
, pp. 1738-1742
-
-
Apirion, D.1
Lassar, A.B.2
-
26
-
-
0025906534
-
Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same
-
1713283
-
Melefors O, von Gabain A (1991) Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same. Mol Microbiol 5:857-864
-
(1991)
Mol Microbiol
, vol.5
, pp. 857-864
-
-
Melefors, O.1
Von Gabain, A.2
-
27
-
-
0025688893
-
RNase E, an endoribonuclease, has a general role in the chemical decay of Escherichia coli mRNA: Evidence that rne and ams are the same genetic locus
-
1708438
-
Mudd EA, Krisch HM, Higgins CF (1990) RNase E, an endoribonuclease, has a general role in the chemical decay of Escherichia coli mRNA: evidence that rne and ams are the same genetic locus. Mol Microbiol 4:2127-2135
-
(1990)
Mol Microbiol
, vol.4
, pp. 2127-2135
-
-
Mudd, E.A.1
Krisch, H.M.2
Higgins, C.F.3
-
28
-
-
0018791193
-
A conditional lethal mutation in an E coli strain with a longer chemical lifetime of messenger RNA
-
110942
-
Ono M, Kuwano M (1979) A conditional lethal mutation in an E. coli strain with a longer chemical lifetime of messenger RNA. J Mol Biol 129:343-357
-
(1979)
J Mol Biol
, vol.129
, pp. 343-357
-
-
Ono, M.1
Kuwano, M.2
-
29
-
-
0025881986
-
The gene specifying RNase e (rne) and a gene affecting mRNA stability (ams) are the same gene
-
1713282
-
Taraseviciene L, Miczak A, Apirion D (1991) The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene. Mol Microbiol 5:851-855
-
(1991)
Mol Microbiol
, vol.5
, pp. 851-855
-
-
Taraseviciene, L.1
Miczak, A.2
Apirion, D.3
-
30
-
-
35548995356
-
The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase e
-
17447862
-
Carpousis AJ (2007) The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E. Annu Rev Microbiol 61:71-87
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 71-87
-
-
Carpousis, A.J.1
-
31
-
-
0026559344
-
Specificity of Escherichia coli endoribonuclease RNAse E: In vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site
-
1730408
-
Ehretsmann C, Carpousis AJ, Krisch HM (1992) Specificity of Escherichia coli endoribonuclease RNAse E: in vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site. Genes Dev 6:149-159
-
(1992)
Genes Dev
, vol.6
, pp. 149-159
-
-
Ehretsmann, C.1
Carpousis, A.J.2
Krisch, H.M.3
-
32
-
-
0242395917
-
Probing the substrate specificity of Escherichia coli RNase e using a novel oligonucleotide-based assay
-
12907711
-
Kaberdin VR (2003) Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay. Nucleic Acids Res 31:4710-4716
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4710-4716
-
-
Kaberdin, V.R.1
-
33
-
-
0028276973
-
Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA i encoded by the pBR322 plasmid
-
7511607
-
Lin-Chao S, Wong TT, McDowall KJ, Cohen SN (1994) Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid. J Biol Chem 269:10797-10803
-
(1994)
J Biol Chem
, vol.269
, pp. 10797-10803
-
-
Lin-Chao, S.1
Wong, T.T.2
McDowall, K.J.3
Cohen, S.N.4
-
34
-
-
0028341449
-
A + U content rather than a particular nucleotide order determines the specificity of RNase e cleavage
-
7511606
-
McDowall KJ, Lin-Chao S, Cohen SN (1994) A + U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. J Biol Chem 269:10790-10796
-
(1994)
J Biol Chem
, vol.269
, pp. 10790-10796
-
-
McDowall, K.J.1
Lin-Chao, S.2
Cohen, S.N.3
-
35
-
-
0242666860
-
Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease e and the identification of critical functional groups in RNA substrates
-
12947103
-
Redko Y, Tock MR, Adams CJ, Kaberdin VR, Grasby JA, McDowall KJ (2003) Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates. J Biol Chem 278:44001-44008
-
(2003)
J Biol Chem
, vol.278
, pp. 44001-44008
-
-
Redko, Y.1
Tock, M.R.2
Adams, C.J.3
Kaberdin, V.R.4
Grasby, J.A.5
McDowall, K.J.6
-
36
-
-
0042497078
-
RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli
-
12450135
-
Kaga N, Umitsuki G, Nagai K, Wachi M (2002) RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli. Biosci Biotechnol Biochem 66:2216-2220
-
(2002)
Biosci Biotechnol Biochem
, vol.66
, pp. 2216-2220
-
-
Kaga, N.1
Umitsuki, G.2
Nagai, K.3
Wachi, M.4
-
37
-
-
0035018365
-
Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli
-
11380618
-
Umitsuki G, Wachi M, Takada A, Hikichi T, Nagai K (2001) Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli. Genes Cells 6:403-410
-
(2001)
Genes Cells
, vol.6
, pp. 403-410
-
-
Umitsuki, G.1
Wachi, M.2
Takada, A.3
Hikichi, T.4
Nagai, K.5
-
38
-
-
0024426789
-
Autoregulation of RNase III operon by mRNA processing
-
2583104
-
Bardwell JC, Regnier P, Chen SM, Nakamura Y, Grunberg-Manago M, Court DL (1989) Autoregulation of RNase III operon by mRNA processing. EMBO J 8:3401-3407
-
(1989)
EMBO J
, vol.8
, pp. 3401-3407
-
-
Bardwell, J.C.1
Regnier, P.2
Chen, S.M.3
Nakamura, Y.4
Grunberg-Manago, M.5
Court, D.L.6
-
39
-
-
0023370347
-
The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5?end
-
3308454
-
Portier C, Dondon L, Grunberg-Manago M, Regnier P (1987) The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5?end. EMBO J 6:2165-2170
-
(1987)
EMBO J
, vol.6
, pp. 2165-2170
-
-
Portier, C.1
Dondon, L.2
Grunberg-Manago, M.3
Regnier, P.4
-
40
-
-
0024851443
-
Cleavage by RNase III in the transcripts of the met Y-nus-A-infB operon of Escherichia coli releases the tRNA and initiates the decay of the downstream mRNA
-
2481042
-
Regnier P, Grunberg-Manago M (1989) Cleavage by RNase III in the transcripts of the met Y-nus-A-infB operon of Escherichia coli releases the tRNA and initiates the decay of the downstream mRNA. J Mol Biol 210:293-302
-
(1989)
J Mol Biol
, vol.210
, pp. 293-302
-
-
Regnier, P.1
Grunberg-Manago, M.2
-
41
-
-
0021612444
-
Removal of a terminator structure by RNA processing regulates int gene expression
-
6234400
-
Schmeissner U, McKenney K, Rosenberg M, Court D (1984) Removal of a terminator structure by RNA processing regulates int gene expression. J Mol Biol 176:39-53
-
(1984)
J Mol Biol
, vol.176
, pp. 39-53
-
-
Schmeissner, U.1
McKenney, K.2
Rosenberg, M.3
Court, D.4
-
42
-
-
0028568179
-
Ribonuclease e provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA
-
8001821
-
Alifano P, Rivellini F, Piscitelli C, Arraiano CM, Bruni CB, Carlomagno MS (1994) Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA. Genes Dev 8:3021-3031
-
(1994)
Genes Dev
, vol.8
, pp. 3021-3031
-
-
Alifano, P.1
Rivellini, F.2
Piscitelli, C.3
Arraiano, C.M.4
Bruni, C.B.5
Carlomagno, M.S.6
-
43
-
-
0345255620
-
A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs
-
14585931
-
Li Y, Altman S (2003) A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs. Proc Natl Acad Sci USA 100:13213-13218
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 13213-13218
-
-
Li, Y.1
Altman, S.2
-
44
-
-
56749105872
-
Post-transcriptional control of Crp-cAMP by RNase LS in Escherichia coli
-
19019153
-
Iwamoto A, Lemire S, Yonesaki T (2008) Post-transcriptional control of Crp-cAMP by RNase LS in Escherichia coli. Mol Microbiol 70:1570-1578
-
(2008)
Mol Microbiol
, vol.70
, pp. 1570-1578
-
-
Iwamoto, A.1
Lemire, S.2
Yonesaki, T.3
-
45
-
-
33645826534
-
RNase Z in Escherichia coli plays a significant role in mRNA decay
-
16629673
-
Perwez T, Kushner SR (2006) RNase Z in Escherichia coli plays a significant role in mRNA decay. Mol Microbiol 60:723-737
-
(2006)
Mol Microbiol
, vol.60
, pp. 723-737
-
-
Perwez, T.1
Kushner, S.R.2
-
46
-
-
3142763812
-
Characterization of an Escherichia coli elaC deletion mutant
-
15303284
-
Schilling O, Ruggeberg S, Vogel A, Rittner N, Weichert S, Schmidt S, Doig S, Franz T, Benes V, Andrews SC, Baum M, Meyer-Klaucke W (2004) Characterization of an Escherichia coli elaC deletion mutant. Biochem Biophys Res Commun 320:1365-1373
-
(2004)
Biochem Biophys Res Commun
, vol.320
, pp. 1365-1373
-
-
Schilling, O.1
Ruggeberg, S.2
Vogel, A.3
Rittner, N.4
Weichert, S.5
Schmidt, S.6
Doig, S.7
Franz, T.8
Benes, V.9
Andrews, S.C.10
Baum, M.11
Meyer-Klaucke, W.12
-
47
-
-
83355169557
-
Two pathways for RNase e action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination
-
22026368
-
Anupama K, Leela JK, Gowrishankar J (2011) Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination. Mol Microbiol 82:1330-1348
-
(2011)
Mol Microbiol
, vol.82
, pp. 1330-1348
-
-
Anupama, K.1
Leela, J.K.2
Gowrishankar, J.3
-
48
-
-
0034533785
-
Endoribonuclease RNase III is essential in Bacillus subtilis
-
Herskowitz MA, Bechhofer DH (2000) Endoribonuclease RNase III is essential in Bacillus subtilis. Mol Microbiol 38:1027-1033
-
(2000)
Mol Microbiol
, vol.38
, pp. 1027-1033
-
-
Herskowitz, M.A.1
Bechhofer, D.H.2
-
49
-
-
84872010039
-
The essential function of B subtilis RNase III is to silence foreign toxin genes
-
23300471
-
Durand S, Gilet L, Condon C (2012) The essential function of B. subtilis RNase III is to silence foreign toxin genes. PLoS Genet 8:e1003181
-
(2012)
PLoS Genet
, vol.8
, pp. 1003181
-
-
Durand, S.1
Gilet, L.2
Condon, C.3
-
50
-
-
84859229689
-
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs
-
22412379
-
Durand S, Gilet L, Bessieres P, Nicolas P, Condon C (2012) Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet 8:e1002520
-
(2012)
PLoS Genet
, vol.8
, pp. 1002520
-
-
Durand, S.1
Gilet, L.2
Bessieres, P.3
Nicolas, P.4
Condon, C.5
-
51
-
-
84055200530
-
Genome-wide antisense transcription drives mRNA processing in bacteria
-
22123973
-
Lasa I, Toledo-Arana A, Dobin A, Villanueva M, de los Mozos IR, Vergara-Irigaray M, Segura V, Fagegaltier D, Penades JR, Valle J, Solano C, Gingeras TR (2011) Genome-wide antisense transcription drives mRNA processing in bacteria. Proc Natl Acad Sci USA 108:20172-20177
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 20172-20177
-
-
Lasa, I.1
Toledo-Arana, A.2
Dobin, A.3
Villanueva, M.4
De Los Mozos, I.R.5
Vergara-Irigaray, M.6
Segura, V.7
Fagegaltier, D.8
Penades, J.R.9
Valle, J.10
Solano, C.11
Gingeras, T.R.12
-
52
-
-
84864052473
-
Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression
-
22761586
-
Lioliou E, Sharma CM, Caldelari I, Helfer AC, Fechter P, Vandenesch F, Vogel J, Romby P (2012) Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression. PLoS Genet 8:e1002782
-
(2012)
PLoS Genet
, vol.8
, pp. 1002782
-
-
Lioliou, E.1
Sharma, C.M.2
Caldelari, I.3
Helfer, A.C.4
Fechter, P.5
Vandenesch, F.6
Vogel, J.7
Romby, P.8
-
53
-
-
0037115876
-
The phylogenetic distribution of bacterial ribonucleases
-
12490701
-
Condon C, Putzer H (2002) The phylogenetic distribution of bacterial ribonucleases. Nucleic Acids Res 30:5339-5346
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5339-5346
-
-
Condon, C.1
Putzer, H.2
-
54
-
-
10644230266
-
A genomic timescale of prokaryote evolution: Insights into the origin of methanogenesis, phototrophy, and the colonization of land
-
15535883
-
Battistuzzi FU, Feijao A, Hedges SB (2004) A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol Biol 4:44
-
(2004)
BMC Evol Biol
, vol.4
, pp. 44
-
-
Battistuzzi, F.U.1
Feijao, A.2
Hedges, S.B.3
-
55
-
-
64049109526
-
Messenger RNA decay and maturation in Bacillus subtilis
-
19215774
-
Bechhofer DH (2009) Messenger RNA decay and maturation in Bacillus subtilis. Prog Mol Biol Transl Sci 85:231-273
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 231-273
-
-
Bechhofer, D.H.1
-
56
-
-
0031547969
-
Processing of the Bacillus subtilis thrS leader mRNA is RNase E-dependent in Escherichia coli
-
9159466
-
Condon C, Putzer H, Luo D, Grunberg-Manago M (1997) Processing of the Bacillus subtilis thrS leader mRNA is RNase E-dependent in Escherichia coli. J Mol Biol 268:235-242
-
(1997)
J Mol Biol
, vol.268
, pp. 235-242
-
-
Condon, C.1
Putzer, H.2
Luo, D.3
Grunberg-Manago, M.4
-
57
-
-
34249101864
-
5?-to-3?exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5?stability of mRNA
-
17512403
-
Mathy N, Benard L, Pellegrini O, Daou R, Wen T, Condon C (2007) 5?-to-3?exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5?stability of mRNA. Cell 129:681-692
-
(2007)
Cell
, vol.129
, pp. 681-692
-
-
Mathy, N.1
Benard, L.2
Pellegrini, O.3
Daou, R.4
Wen, T.5
Condon, C.6
-
59
-
-
70450222923
-
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
-
19779461
-
Shahbabian K, Jamalli A, Zig L, Putzer H (2009) RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J 28:3523-3533
-
(2009)
EMBO J
, vol.28
, pp. 3523-3533
-
-
Shahbabian, K.1
Jamalli, A.2
Zig, L.3
Putzer, H.4
-
60
-
-
0037221712
-
Ectopic RNase e sites promote bypass of 5?-end-dependent mRNA decay in Escherichia coli
-
12492855
-
Baker KE, Mackie GA (2003) Ectopic RNase E sites promote bypass of 5?-end-dependent mRNA decay in Escherichia coli. Mol Microbiol 47:75-88
-
(2003)
Mol Microbiol
, vol.47
, pp. 75-88
-
-
Baker, K.E.1
Mackie, G.A.2
-
61
-
-
34250323480
-
Role of RNA structure and susceptibility to RNase e in regulation of a cold shock mRNA, cspA mRNA
-
17416651
-
Hankins JS, Zappavigna C, Prud'homme-Genereux A, Mackie GA (2007) Role of RNA structure and susceptibility to RNase E in regulation of a cold shock mRNA, cspA mRNA. J Bacteriol 189:4353-4358
-
(2007)
J Bacteriol
, vol.189
, pp. 4353-4358
-
-
Hankins, J.S.1
Zappavigna, C.2
Prud'Homme-Genereux, A.3
Mackie, G.A.4
-
62
-
-
67650514021
-
Novel activities of glycolytic enzymes in Bacillus subtilis: Interactions with essential proteins involved in mRNA processing
-
19193632
-
Commichau FM, Rothe FM, Herzberg C, Wagner E, Hellwig D, Lehnik-Habrink M, Hammer E, Völker U, Stülke J (2009) Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing. Mol Cell Proteomics 8:1350-1360
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1350-1360
-
-
Commichau, F.M.1
Rothe, F.M.2
Herzberg, C.3
Wagner, E.4
Hellwig, D.5
Lehnik-Habrink, M.6
Hammer, E.7
Völker, U.8
Stülke, J.9
-
63
-
-
27144495430
-
Structure of Escherichia coli RNase e catalytic domain and implications for RNA turnover
-
16237448
-
Callaghan AJ, Marcaida MJ, Stead JA, McDowall KJ, Scott WG, Luisi BF (2005) Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature 437:1187-1191
-
(2005)
Nature
, vol.437
, pp. 1187-1191
-
-
Callaghan, A.J.1
Marcaida, M.J.2
Stead, J.A.3
McDowall, K.J.4
Scott, W.G.5
Luisi, B.F.6
-
64
-
-
0037102538
-
Metallo-beta-lactamase fold within nucleic acids processing enzymes: The beta-CASP family
-
12177301
-
Callebaut I, Moshous D, Mornon JP, de Villartay JP (2002) Metallo-beta-lactamase fold within nucleic acids processing enzymes: the beta-CASP family. Nucleic Acids Res 30:3592-3601
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3592-3601
-
-
Callebaut, I.1
Moshous, D.2
Mornon, J.P.3
De Villartay, J.P.4
-
65
-
-
0032408864
-
The HD domain defines a new superfamily of metal-dependent phosphohydrolases
-
9868367
-
Aravind L, Koonin EV (1998) The HD domain defines a new superfamily of metal-dependent phosphohydrolases. Trends Biochem Sci 23:469-472
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 469-472
-
-
Aravind, L.1
Koonin, E.V.2
-
66
-
-
84859713761
-
When ribonucleases come into play in pathogens: A survey of Gram-positive bacteria
-
Jester BC, Romby P, Lioliou E (2012) When ribonucleases come into play in pathogens: a survey of Gram-positive bacteria. Int J Microbiol 2012:592196
-
(2012)
J Microbiol
, vol.2012
, pp. 592196
-
-
Jester, B.C.1
Romby, P.2
Lioliou, E.3
-
67
-
-
0019476056
-
Inactivation of the ribonucleic acid-processing enzyme ribonuclease e blocks cell division
-
6163761
-
Goldblum K, Apririon D (1981) Inactivation of the ribonucleic acid-processing enzyme ribonuclease E blocks cell division. J Bacteriol 146:128-132
-
(1981)
J Bacteriol
, vol.146
, pp. 128-132
-
-
Goldblum, K.1
Apririon, D.2
-
68
-
-
1442325396
-
The function of RNase G in Escherichia coli is constrained by its amino and carboxyl termini
-
14763991
-
Deana A, Belasco JG (2004) The function of RNase G in Escherichia coli is constrained by its amino and carboxyl termini. Mol Microbiol 51:1205-1217
-
(2004)
Mol Microbiol
, vol.51
, pp. 1205-1217
-
-
Deana, A.1
Belasco, J.G.2
-
69
-
-
0036274640
-
RNase G complementation of rne null mutation identifies functional interrelationships with RNase e in Escherichia coli
-
11952897
-
Lee K, Bernstein JA, Cohen SN (2002) RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol Microbiol 43:1445-1456
-
(2002)
Mol Microbiol
, vol.43
, pp. 1445-1456
-
-
Lee, K.1
Bernstein, J.A.2
Cohen, S.N.3
-
70
-
-
0036571060
-
Initiation of tRNA maturation by RNase e is essential for cell viability in E coli
-
12000793
-
Ow MC, Kushner SR (2002) Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes Dev 16:1102-1115
-
(2002)
Genes Dev
, vol.16
, pp. 1102-1115
-
-
Ow, M.C.1
Kushner, S.R.2
-
71
-
-
84864016302
-
Second-site suppression of RNase e essentiality by mutation of the deaD RNA helicase in Escherichia coli
-
22328678
-
Tamura M, Kers JA, Cohen SN (2012) Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli. J Bacteriol 194:1919-1926
-
(2012)
J Bacteriol
, vol.194
, pp. 1919-1926
-
-
Tamura, M.1
Kers, J.A.2
Cohen, S.N.3
-
72
-
-
33745885282
-
RNase e maintenance of proper FtsZ/FtsA ratio required for nonfilamentous growth of Escherichia coli cells but not for colony-forming ability
-
16816186
-
Tamura M, Lee K, Miller CA, Moore CJ, Shirako Y, Kobayashi M, Cohen SN (2006) RNase E maintenance of proper FtsZ/FtsA ratio required for nonfilamentous growth of Escherichia coli cells but not for colony-forming ability. J Bacteriol 188:5145-5152
-
(2006)
J Bacteriol
, vol.188
, pp. 5145-5152
-
-
Tamura, M.1
Lee, K.2
Miller, C.A.3
Moore, C.J.4
Shirako, Y.5
Kobayashi, M.6
Cohen, S.N.7
-
73
-
-
82155166270
-
Mycobacterium smegmatis RNase J is a 5?-3?exo-/endoribonuclease and both RNase J and RNase e are involved in ribosomal RNA maturation
-
22014150
-
Taverniti V, Forti F, Ghisotti D, Putzer H (2011) Mycobacterium smegmatis RNase J is a 5?-3?exo-/endoribonuclease and both RNase J and RNase E are involved in ribosomal RNA maturation. Mol Microbiol 82:1260-1276
-
(2011)
Mol Microbiol
, vol.82
, pp. 1260-1276
-
-
Taverniti, V.1
Forti, F.2
Ghisotti, D.3
Putzer, H.4
-
74
-
-
84864109921
-
New range of vectors with a stringent 5-fluoroorotic acid-based counterselection system for generating mutants by allelic replacement in Staphylococcus aureus
-
22447609
-
Redder P, Linder P (2012) New range of vectors with a stringent 5-fluoroorotic acid-based counterselection system for generating mutants by allelic replacement in Staphylococcus aureus. Appl Environ Microbiol 78:3846-3854
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 3846-3854
-
-
Redder, P.1
Linder, P.2
-
75
-
-
84877989998
-
Knockouts of the genes encoding ribonucleases RNase y and J1 are viable in B subtilis, with major defects in cell morphology, sporulation and competence
-
23504012
-
Figaro S, Durand S, Gilet L, Cayet N, Sachse M, Condon C (2013) Knockouts of the genes encoding ribonucleases RNase Y and J1 are viable in B. subtilis, with major defects in cell morphology, sporulation and competence. J Bacteriol 195:2340-2348
-
(2013)
J Bacteriol
, vol.195
, pp. 2340-2348
-
-
Figaro, S.1
Durand, S.2
Gilet, L.3
Cayet, N.4
Sachse, M.5
Condon, C.6
-
76
-
-
0345668475
-
Essential Bacillus subtilis genes
-
12682299
-
Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P, Boland F, Brignell SC, Bron S, Bunai K, Chapuis J, Christiansen LC, Danchin A, Debarbouille M, Dervyn E, Deuerling E, Devine K, Devine SK, Dreesen O, Errington J, Fillinger S, Foster SJ, Fujita Y, Galizzi A, Gardan R, Eschevins C, Fukushima T, Haga K, Harwood CR, Hecker M, Hosoya D, Hullo MF, Kakeshita H, Karamata D, Kasahara Y, Kawamura F, Koga K, Koski P, Kuwana R, Imamura D, Ishimaru M, Ishikawa S, Ishio I, Le Coq D, Masson A, Mauel C, Meima R, Mellado RP, Moir A, Moriya S, Nagakawa E, Nanamiya H, Nakai S, Nygaard P, Ogura M, Ohanan T, O'Reilly M, O'Rourke M, Pragai Z, Pooley HM, Rapoport G, Rawlins JP, Rivas LA, Rivolta C, Sadaie A, Sadaie Y, Sarvas M, Sato T, Saxild HH, Scanlan E, Schumann W, Seegers JF, Sekiguchi J, Sekowska A, Seror SJ, Simon M, Stragier P, Studer R, Takamatsu H, Tanaka T, Takeuchi M, Thomaides HB, Vagner V, van Dijl JM, Watabe K, Wipat A, Yamamoto H, Yamamoto M, Yamamoto Y, Yamane K, Yata K, Yoshida K, Yoshikawa H, Zuber U, Ogasawara N (2003) Essential Bacillus subtilis genes. Proc Natl Acad Sci USA 100:4678-4683
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 4678-4683
-
-
Kobayashi, K.1
Ehrlich, S.D.2
Albertini, A.3
Amati, G.4
Andersen, K.K.5
Arnaud, M.6
Asai, K.7
Ashikaga, S.8
Aymerich, S.9
Bessieres, P.10
Boland, F.11
Brignell, S.C.12
Bron, S.13
Bunai, K.14
Chapuis, J.15
Christiansen, L.C.16
Danchin, A.17
Debarbouille, M.18
Dervyn, E.19
Deuerling, E.20
Devine, K.21
Devine, S.K.22
Dreesen, O.23
Errington, J.24
Fillinger, S.25
Foster, S.J.26
Fujita, Y.27
Galizzi, A.28
Gardan, R.29
Eschevins, C.30
Fukushima, T.31
Haga, K.32
Harwood, C.R.33
Hecker, M.34
Hosoya, D.35
Hullo, M.F.36
Kakeshita, H.37
Karamata, D.38
Kasahara, Y.39
Kawamura, F.40
Koga, K.41
Koski, P.42
Kuwana, R.43
Imamura, D.44
Ishimaru, M.45
Ishikawa, S.46
Ishio, I.47
Le Coq, D.48
Masson, A.49
Mauel, C.50
Meima, R.51
Mellado, R.P.52
Moir, A.53
Moriya, S.54
Nagakawa, E.55
Nanamiya, H.56
Nakai, S.57
Nygaard, P.58
Ogura, M.59
Ohanan, T.60
O'Reilly, M.61
O'Rourke, M.62
Pragai, Z.63
Pooley, H.M.64
Rapoport, G.65
Rawlins, J.P.66
Rivas, L.A.67
Rivolta, C.68
Sadaie, A.69
Sadaie, Y.70
Sarvas, M.71
Sato, T.72
Saxild, H.H.73
Scanlan, E.74
Schumann, W.75
Seegers, J.F.76
Sekiguchi, J.77
Sekowska, A.78
Seror, S.J.79
Simon, M.80
Stragier, P.81
Studer, R.82
Takamatsu, H.83
Tanaka, T.84
Takeuchi, M.85
Thomaides, H.B.86
Vagner, V.87
Van Dijl, J.M.88
Watabe, K.89
Wipat, A.90
Yamamoto, H.91
Yamamoto, M.92
Yamamoto, Y.93
Yamane, K.94
Yata, K.95
Yoshida, K.96
Yoshikawa, H.97
Zuber, U.98
Ogasawara, N.99
more..
-
77
-
-
75149117735
-
The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes
-
20025665
-
Bugrysheva JV, Scott JR (2010) The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes. Mol Microbiol 75:731-743
-
(2010)
Mol Microbiol
, vol.75
, pp. 731-743
-
-
Bugrysheva, J.V.1
Scott, J.R.2
-
78
-
-
77952721475
-
Virulence gene regulation by CvfA, a putative RNase: The CvfA-enolase complex in Streptococcus pyogenes links nutritional stress, growth-phase control, and virulence gene expression
-
20385762
-
Kang SO, Caparon MG, Cho KH (2010) Virulence gene regulation by CvfA, a putative RNase: the CvfA-enolase complex in Streptococcus pyogenes links nutritional stress, growth-phase control, and virulence gene expression. Infect Immun 78:2754-2767
-
(2010)
Infect Immun
, vol.78
, pp. 2754-2767
-
-
Kang, S.O.1
Caparon, M.G.2
Cho, K.H.3
-
79
-
-
0032531768
-
Ribonuclease e is a 5?-end-dependent endonuclease
-
9790196
-
Mackie GA (1998) Ribonuclease E is a 5?-end-dependent endonuclease. Nature 395:720-723
-
(1998)
Nature
, vol.395
, pp. 720-723
-
-
Mackie, G.A.1
-
80
-
-
48349130534
-
The crystal structure of the Escherichia coli RNase e apoprotein and a mechanism for RNA degradation
-
18682225
-
Koslover DJ, Callaghan AJ, Marcaida MJ, Garman EF, Martick M, Scott WG, Luisi BF (2008) The crystal structure of the Escherichia coli RNase E apoprotein and a mechanism for RNA degradation. Structure 16:1238-1244
-
(2008)
Structure
, vol.16
, pp. 1238-1244
-
-
Koslover, D.J.1
Callaghan, A.J.2
Marcaida, M.J.3
Garman, E.F.4
Martick, M.5
Scott, W.G.6
Luisi, B.F.7
-
81
-
-
70450230359
-
Substrate binding and active site residues in RNases e and G: Role of the 5?-sensor
-
19778900
-
Garrey SM, Blech M, Riffell JL, Hankins JS, Stickney LM, Diver M, Hsu YH, Kunanithy V, Mackie GA (2009) Substrate binding and active site residues in RNases E and G: role of the 5?-sensor. J Biol Chem 284:31843-31850
-
(2009)
J Biol Chem
, vol.284
, pp. 31843-31850
-
-
Garrey, S.M.1
Blech, M.2
Riffell, J.L.3
Hankins, J.S.4
Stickney, L.M.5
Diver, M.6
Hsu, Y.H.7
Kunanithy, V.8
Mackie, G.A.9
-
82
-
-
3042645502
-
Catalytic activation of multimeric RNase e and RNase G by 5?-monophosphorylated RNA
-
15197283
-
Jiang X, Belasco JG (2004) Catalytic activation of multimeric RNase E and RNase G by 5?-monophosphorylated RNA. Proc Natl Acad Sci USA 101:9211-9216
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9211-9216
-
-
Jiang, X.1
Belasco, J.G.2
-
83
-
-
36849032886
-
Sensing of 5?monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo
-
18078441
-
Jourdan SS, McDowall KJ (2008) Sensing of 5?monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo. Mol Microbiol 67:102-115
-
(2008)
Mol Microbiol
, vol.67
, pp. 102-115
-
-
Jourdan, S.S.1
McDowall, K.J.2
-
84
-
-
44149118200
-
The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E coli enzyme
-
18441049
-
Schein A, Sheffy-Levin S, Glaser F, Schuster G (2008) The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme. RNA 14:1057-1068
-
(2008)
RNA
, vol.14
, pp. 1057-1068
-
-
Schein, A.1
Sheffy-Levin, S.2
Glaser, F.3
Schuster, G.4
-
85
-
-
34147145981
-
Quaternary structure and biochemical properties of mycobacterial RNase E/G
-
17201693
-
Zeller ME, Csanadi A, Miczak A, Rose T, Bizebard T, Kaberdin VR (2007) Quaternary structure and biochemical properties of mycobacterial RNase E/G. Biochem J 403:207-215
-
(2007)
Biochem J
, vol.403
, pp. 207-215
-
-
Zeller, M.E.1
Csanadi, A.2
Miczak, A.3
Rose, T.4
Bizebard, T.5
Kaberdin, V.R.6
-
86
-
-
20144381893
-
"zn-link": A metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase e
-
15779893
-
Callaghan AJ, Redko Y, Murphy LM, Grossmann JG, Yates D, Garman E, Ilag LL, Robinson CV, Symmons MF, McDowall KJ, Luisi BF (2005) "Zn-link": a metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E. Biochemistry 44:4667-4675
-
(2005)
Biochemistry
, vol.44
, pp. 4667-4675
-
-
Callaghan, A.J.1
Redko, Y.2
Murphy, L.M.3
Grossmann, J.G.4
Yates, D.5
Garman, E.6
Ilag, L.L.7
Robinson, C.V.8
Symmons, M.F.9
McDowall, K.J.10
Luisi, B.F.11
-
88
-
-
84860723984
-
From conformational chaos to robust regulation: The structure and function of the multi-enzyme RNA degradosome
-
22169164
-
Gorna MW, Carpousis AJ, Luisi BF (2012) From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome. Q Rev Biophys 45:105-145
-
(2012)
Q Rev Biophys
, vol.45
, pp. 105-145
-
-
Gorna, M.W.1
Carpousis, A.J.2
Luisi, B.F.3
-
89
-
-
34250875706
-
Initiation of RNA decay in Escherichia coli by 5?pyrophosphate removal
-
17612492
-
Celesnik H, Deana A, Belasco JG (2007) Initiation of RNA decay in Escherichia coli by 5?pyrophosphate removal. Mol Cell 27:79-90
-
(2007)
Mol Cell
, vol.27
, pp. 79-90
-
-
Celesnik, H.1
Deana, A.2
Belasco, J.G.3
-
90
-
-
38349117689
-
The bacterial enzyme RppH triggers messenger RNA degradation by 5?pyrophosphate removal
-
18202662
-
Deana A, Celesnik H, Belasco JG (2008) The bacterial enzyme RppH triggers messenger RNA degradation by 5?pyrophosphate removal. Nature 451:355-358
-
(2008)
Nature
, vol.451
, pp. 355-358
-
-
Deana, A.1
Celesnik, H.2
Belasco, J.G.3
-
91
-
-
0033214061
-
The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
-
10508173
-
Dunckley T, Parker R (1999) The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif. EMBO J 18:5411-5422
-
(1999)
EMBO J
, vol.18
, pp. 5411-5422
-
-
Dunckley, T.1
Parker, R.2
-
92
-
-
0031951386
-
MRNA stabilization by the ompA 5?untranslated region: Two protective elements hinder distinct pathways for mRNA degradation
-
9510333
-
Arnold TE, Yu J, Belasco JG (1998) mRNA stabilization by the ompA 5?untranslated region: two protective elements hinder distinct pathways for mRNA degradation. RNA 4:319-330
-
(1998)
RNA
, vol.4
, pp. 319-330
-
-
Arnold, T.E.1
Yu, J.2
Belasco, J.G.3
-
93
-
-
0026492668
-
Control of RNase E-mediated RNA degradation by 5?-terminal base pairing in E coli
-
1280335
-
Bouvet P, Belasco JG (1992) Control of RNase E-mediated RNA degradation by 5?-terminal base pairing in E. coli. Nature 360:488-491
-
(1992)
Nature
, vol.360
, pp. 488-491
-
-
Bouvet, P.1
Belasco, J.G.2
-
94
-
-
0033038518
-
Importance of a 5?stem-loop for longevity of papA mRNA in Escherichia coli
-
10348874
-
Bricker AL, Belasco JG (1999) Importance of a 5?stem-loop for longevity of papA mRNA in Escherichia coli. J Bacteriol 181:3587-3590
-
(1999)
J Bacteriol
, vol.181
, pp. 3587-3590
-
-
Bricker, A.L.1
Belasco, J.G.2
-
95
-
-
0026602761
-
A 5?-terminal stem-loop structure can stabilize mRNA in Escherichia coli
-
1370426
-
Emory SA, Bouvet P, Belasco JG (1992) A 5?-terminal stem-loop structure can stabilize mRNA in Escherichia coli. Genes Dev 6:135-148
-
(1992)
Genes Dev
, vol.6
, pp. 135-148
-
-
Emory, S.A.1
Bouvet, P.2
Belasco, J.G.3
-
96
-
-
79958839563
-
Roles of the 5?-phosphate sensor domain in RNase e
-
21518390
-
Garrey SM, Mackie GA (2011) Roles of the 5?-phosphate sensor domain in RNase E. Mol Microbiol 80:1613-1624
-
(2011)
Mol Microbiol
, vol.80
, pp. 1613-1624
-
-
Garrey, S.M.1
Mackie, G.A.2
-
97
-
-
84870255362
-
Influence of translation on RppH-dependent mRNA degradation in Escherichia coli
-
22989003
-
Richards J, Luciano DJ, Belasco JG (2012) Influence of translation on RppH-dependent mRNA degradation in Escherichia coli. Mol Microbiol 86:1063-1072
-
(2012)
Mol Microbiol
, vol.86
, pp. 1063-1072
-
-
Richards, J.1
Luciano, D.J.2
Belasco, J.G.3
-
98
-
-
84870247169
-
The ribosome binding site of a mini-ORF protects a T3SS mRNA from degradation by RNase e
-
23043360
-
Lodato PB, Hsieh PK, Belasco JG, Kaper JB (2012) The ribosome binding site of a mini-ORF protects a T3SS mRNA from degradation by RNase E. Mol Microbiol 86:1167-1182
-
(2012)
Mol Microbiol
, vol.86
, pp. 1167-1182
-
-
Lodato, P.B.1
Hsieh, P.K.2
Belasco, J.G.3
Kaper, J.B.4
-
99
-
-
84873165273
-
Post-transcriptional regulation on a global scale: Form and function of Csr/Rsm systems
-
22672726
-
Romeo T, Vakulskas CA, Babitzke P (2013) Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems. Environ Microbiol 15:313-324
-
(2013)
Environ Microbiol
, vol.15
, pp. 313-324
-
-
Romeo, T.1
Vakulskas, C.A.2
Babitzke, P.3
-
100
-
-
84873442308
-
CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage
-
23305111
-
Yakhnin AV, Baker CS, Vakulskas CA, Yakhnin H, Berezin I, Romeo T, Babitzke P (2013) CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage. Mol Microbiol 87:851-866
-
(2013)
Mol Microbiol
, vol.87
, pp. 851-866
-
-
Yakhnin, A.V.1
Baker, C.S.2
Vakulskas, C.A.3
Yakhnin, H.4
Berezin, I.5
Romeo, T.6
Babitzke, P.7
-
101
-
-
0345107914
-
Induced mRNA stability in Bacillus subtilis
-
3099297
-
Bechhofer DH, Dubnau D (1987) Induced mRNA stability in Bacillus subtilis. Proc Natl Acad Sci USA 84:498-502
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 498-502
-
-
Bechhofer, D.H.1
Dubnau, D.2
-
102
-
-
0024418050
-
Mechanism of erythromycin-induced ermC mRNA stability in Bacillus subtilis
-
2478520
-
Bechhofer DH, Zen KH (1989) Mechanism of erythromycin-induced ermC mRNA stability in Bacillus subtilis. J Bacteriol 171:5803-5811
-
(1989)
J Bacteriol
, vol.171
, pp. 5803-5811
-
-
Bechhofer, D.H.1
Zen, K.H.2
-
103
-
-
0025116242
-
The importance of the 5?-region in regulating the stability of sdh mRNA in Bacillus subtilis
-
1707123
-
Melin L, Friden H, Dehlin E, Rutberg L, von Gabain A (1990) The importance of the 5?-region in regulating the stability of sdh mRNA in Bacillus subtilis. Mol Microbiol 4:1881-1889
-
(1990)
Mol Microbiol
, vol.4
, pp. 1881-1889
-
-
Melin, L.1
Friden, H.2
Dehlin, E.3
Rutberg, L.4
Von Gabain, A.5
-
104
-
-
0023775297
-
Erythromycin-induced stabilization of ermA messenger RNA in Staphylococcus aureus and Bacillus subtilis
-
2463370
-
Sandler P, Weisblum B (1988) Erythromycin-induced stabilization of ermA messenger RNA in Staphylococcus aureus and Bacillus subtilis. J Mol Biol 203:905-915
-
(1988)
J Mol Biol
, vol.203
, pp. 905-915
-
-
Sandler, P.1
Weisblum, B.2
-
105
-
-
0024404852
-
Erythromycin-induced ribosome stall in the ermA leader: A barricade to 5?-to-3?nucleolytic cleavage of the ermA transcript
-
2592348
-
Sandler P, Weisblum B (1989) Erythromycin-induced ribosome stall in the ermA leader: a barricade to 5?-to-3?nucleolytic cleavage of the ermA transcript. J Bacteriol 171:6680-6688
-
(1989)
J Bacteriol
, vol.171
, pp. 6680-6688
-
-
Sandler, P.1
Weisblum, B.2
-
106
-
-
0029947261
-
STAB-SD: A Shine-Dalgarno sequence in the 5?untranslated region is a determinant of mRNA stability
-
8736542
-
Agaisse H, Lereclus D (1996) STAB-SD: a Shine-Dalgarno sequence in the 5?untranslated region is a determinant of mRNA stability. Mol Microbiol 20:633-643
-
(1996)
Mol Microbiol
, vol.20
, pp. 633-643
-
-
Agaisse, H.1
Lereclus, D.2
-
107
-
-
0030070778
-
A dual role for the Bacillus subtilis leader and the GlpP protein in the regulated expression of glpD: Antitermination and control of mRNA stability
-
8825777
-
Glatz E, Nilsson R-P, Rutberg L, Rutberg B (1996) A dual role for the Bacillus subtilis leader and the GlpP protein in the regulated expression of glpD: antitermination and control of mRNA stability. Mol Microbiol 19:319-328
-
(1996)
Mol Microbiol
, vol.19
, pp. 319-328
-
-
Glatz, E.1
Nilsson, R.-P.2
Rutberg, L.3
Rutberg, B.4
-
108
-
-
0031886850
-
Antiterminator protein GlpP of Bacillus subtilis binds to glpD leader mRNA
-
9493382
-
Glatz E, Persson M, Rutberg B (1998) Antiterminator protein GlpP of Bacillus subtilis binds to glpD leader mRNA. Microbiology 144:449-456
-
(1998)
Microbiology
, vol.144
, pp. 449-456
-
-
Glatz, E.1
Persson, M.2
Rutberg, B.3
-
109
-
-
0035986640
-
A 5?stem-loop and ribosome binding but not translation are important for the stability of Bacillus subtilis aprE leader mRNA
-
12055299
-
Hambraeus G, Karhumaa K, Rutberg B (2002) A 5?stem-loop and ribosome binding but not translation are important for the stability of Bacillus subtilis aprE leader mRNA. Microbiology 148:1795-1803
-
(2002)
Microbiology
, vol.148
, pp. 1795-1803
-
-
Hambraeus, G.1
Karhumaa, K.2
Rutberg, B.3
-
110
-
-
0042337276
-
Effect of translational signals on mRNA decay in Bacillus subtilis
-
12949089
-
Sharp JS, Bechhofer DH (2003) Effect of translational signals on mRNA decay in Bacillus subtilis. J Bacteriol 185:5372-5379
-
(2003)
J Bacteriol
, vol.185
, pp. 5372-5379
-
-
Sharp, J.S.1
Bechhofer, D.H.2
-
111
-
-
50049132624
-
Erythromycin-induced ribosome stalling and RNase J1-mediated mRNA processing in Bacillus subtilis
-
18647167
-
Yao S, Blaustein JB, Bechhofer DH (2008) Erythromycin-induced ribosome stalling and RNase J1-mediated mRNA processing in Bacillus subtilis. Mol Microbiol 69:1439-1449
-
(2008)
Mol Microbiol
, vol.69
, pp. 1439-1449
-
-
Yao, S.1
Blaustein, J.B.2
Bechhofer, D.H.3
-
112
-
-
80052988291
-
An RNA pyrophosphohydrolase triggers 5?-exonucleolytic degradation of mRNA in Bacillus subtilis
-
21925382
-
Richards J, Liu Q, Pellegrini O, Celesnik H, Yao S, Bechhofer DH, Condon C, Belasco JG (2011) An RNA pyrophosphohydrolase triggers 5?-exonucleolytic degradation of mRNA in Bacillus subtilis. Mol Cell 43:940-949
-
(2011)
Mol Cell
, vol.43
, pp. 940-949
-
-
Richards, J.1
Liu, Q.2
Pellegrini, O.3
Celesnik, H.4
Yao, S.5
Bechhofer, D.H.6
Condon, C.7
Belasco, J.G.8
-
113
-
-
10044266564
-
Gene ytkD of Bacillus subtilis encodes an atypical nucleoside triphosphatase member of the Nudix hydrolase superfamily
-
15576788
-
Xu W, Jones CR, Dunn CA, Bessman MJ (2004) Gene ytkD of Bacillus subtilis encodes an atypical nucleoside triphosphatase member of the Nudix hydrolase superfamily. J Bacteriol 186:8380-8384
-
(2004)
J Bacteriol
, vol.186
, pp. 8380-8384
-
-
Xu, W.1
Jones, C.R.2
Dunn, C.A.3
Bessman, M.J.4
-
114
-
-
84878457429
-
Specificity of RppH-dependent RNA degradation in Bacillus subtilis
-
23610425
-
Hsieh PK, Richards J, Liu Q, Belasco JG (2013) Specificity of RppH-dependent RNA degradation in Bacillus subtilis. Proc Natl Acad Sci USA 110:8864-8869
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 8864-8869
-
-
Hsieh, P.K.1
Richards, J.2
Liu, Q.3
Belasco, J.G.4
-
115
-
-
84878434262
-
Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates
-
23610407
-
Piton J, Larue V, Thillier Y, Dorleans A, Pellegrini O, Li de la Sierra-Gallay I, Vasseur JJ, Debart F, Tisne C, Condon C (2013) Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates. Proc Natl Acad Sci USA 110:8858-8863
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 8858-8863
-
-
Piton, J.1
Larue, V.2
Thillier, Y.3
Dorleans, A.4
Pellegrini, O.5
Li De La Sierra-Gallay, I.6
Vasseur, J.J.7
Debart, F.8
Tisne, C.9
Condon, C.10
-
117
-
-
37249040135
-
Mechanism of mRNA destabilization by the glmS ribozyme
-
18079181
-
Collins JA, Irnov I, Baker S, Winkler WC (2007) Mechanism of mRNA destabilization by the glmS ribozyme. Genes Dev 21:3356-3368
-
(2007)
Genes Dev
, vol.21
, pp. 3356-3368
-
-
Collins, J.A.1
Irnov, I.2
Baker, S.3
Winkler, W.C.4
-
118
-
-
80052465746
-
Molecular basis for the recognition and cleavage of RNA by the bifunctional 5?-3?exo/endoribonuclease RNase J
-
21893286
-
Dorleans A, Li de la Sierra-Gallay I, Piton J, Zig L, Gilet L, Putzer H, Condon C (2011) Molecular basis for the recognition and cleavage of RNA by the bifunctional 5?-3?exo/endoribonuclease RNase J. Structure 19:1252-1261
-
(2011)
Structure
, vol.19
, pp. 1252-1261
-
-
Dorleans, A.1
Li De La Sierra-Gallay, I.2
Piton, J.3
Zig, L.4
Gilet, L.5
Putzer, H.6
Condon, C.7
-
119
-
-
80052458661
-
Unusual, dual endo- and exo-nuclease activity in the degradosome explained by crystal structure analysis of RNase J1
-
21893285
-
Newman JA, Hewitt L, Rodrigues C, Solovyova A, Harwood CR, Lewis RJ (2011) Unusual, dual endo- and exo-nuclease activity in the degradosome explained by crystal structure analysis of RNase J1. Structure 19:1241-1251
-
(2011)
Structure
, vol.19
, pp. 1241-1251
-
-
Newman, J.A.1
Hewitt, L.2
Rodrigues, C.3
Solovyova, A.4
Harwood, C.R.5
Lewis, R.J.6
-
121
-
-
64049113602
-
Poly(A)-assisted RNA decay and modulators of RNA stability
-
19215772
-
Regnier P, Hajnsdorf E (2009) Poly(A)-assisted RNA decay and modulators of RNA stability. Prog Mol Biol Transl Sci 85:137-185
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 137-185
-
-
Regnier, P.1
Hajnsdorf, E.2
-
122
-
-
34250330356
-
Polyadenylation of a functional mRNA controls gene expression in Escherichia coli
-
17395638
-
Joanny G, Le Derout J, Brechemier-Baey D, Labas V, Vinh J, Regnier P, Hajnsdorf E (2007) Polyadenylation of a functional mRNA controls gene expression in Escherichia coli. Nucleic Acids Res 35:2494-2502
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2494-2502
-
-
Joanny, G.1
Le Derout, J.2
Brechemier-Baey, D.3
Labas, V.4
Vinh, J.5
Regnier, P.6
Hajnsdorf, E.7
-
123
-
-
0034612295
-
Unpaired terminal nucleotides and 5?monophosphorylation govern 3?polyadenylation by Escherichia coli poly(A) polymerase i
-
10823925
-
Feng Y, Cohen SN (2000) Unpaired terminal nucleotides and 5?monophosphorylation govern 3?polyadenylation by Escherichia coli poly(A) polymerase I. Proc Natl Acad Sci USA 97:6415-6420
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6415-6420
-
-
Feng, Y.1
Cohen, S.N.2
-
125
-
-
33750984542
-
The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells
-
17040898
-
Mohanty BK, Kushner SR (2006) The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nucleic Acids Res 34:5695-5704
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5695-5704
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
126
-
-
7044285063
-
The Sm-like protein Hfq regulates polyadenylation-dependent mRNA decay in Escherichia coli
-
15522076
-
Mohanty BK, Maples VF, Kushner SR (2004) The Sm-like protein Hfq regulates polyadenylation-dependent mRNA decay in Escherichia coli. Mol Microbiol 54:905-920
-
(2004)
Mol Microbiol
, vol.54
, pp. 905-920
-
-
Mohanty, B.K.1
Maples, V.F.2
Kushner, S.R.3
-
127
-
-
0026725854
-
Poly(A) RNA in Escherichia coli: Nucleotide sequence at the junction of the lpp transcript and the polyadenylate moiety
-
1380161
-
Cao GJ, Sarkar N (1992) Poly(A) RNA in Escherichia coli: nucleotide sequence at the junction of the lpp transcript and the polyadenylate moiety. Proc Natl Acad Sci USA 89:7546-7550
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 7546-7550
-
-
Cao, G.J.1
Sarkar, N.2
-
128
-
-
24744467122
-
Fate of mRNA extremities generated by intrinsic termination: Detailed analysis of reactions catalyzed by ribonuclease II and poly(A) polymerase
-
15885870
-
Folichon M, Marujo PE, Arluison V, Le Derout J, Pellegrini O, Hajnsdorf E, Regnier P (2005) Fate of mRNA extremities generated by intrinsic termination: detailed analysis of reactions catalyzed by ribonuclease II and poly(A) polymerase. Biochimie 87:819-826
-
(2005)
Biochimie
, vol.87
, pp. 819-826
-
-
Folichon, M.1
Marujo, P.E.2
Arluison, V.3
Le Derout, J.4
Pellegrini, O.5
Hajnsdorf, E.6
Regnier, P.7
-
129
-
-
84861560266
-
Polyadenylation helps regulate functional tRNA levels in Escherichia coli
-
22287637
-
Mohanty BK, Maples VF, Kushner SR (2012) Polyadenylation helps regulate functional tRNA levels in Escherichia coli. Nucleic Acids Res 40:4589-4603
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4589-4603
-
-
Mohanty, B.K.1
Maples, V.F.2
Kushner, S.R.3
-
130
-
-
0026475908
-
Identification of the gene for an Escherichia coli poly(A) polymerase
-
1438224
-
Cao GJ, Sarkar N (1992) Identification of the gene for an Escherichia coli poly(A) polymerase. Proc Natl Acad Sci USA 89:10380-10384
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10380-10384
-
-
Cao, G.J.1
Sarkar, N.2
-
131
-
-
0033457296
-
Analysis of the function of Escherichia coli poly(A) polymerase i in RNA metabolism
-
10594833
-
Mohanty BK, Kushner SR (1999) Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism. Mol Microbiol 34:1094-1108
-
(1999)
Mol Microbiol
, vol.34
, pp. 1094-1108
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
132
-
-
84873685962
-
Deregulation of poly(A) polymerase i in Escherichia coli inhibits protein synthesis and leads to cell death
-
23241393
-
Mohanty BK, Kushner SR (2013) Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death. Nucleic Acids Res 41:1757-1766
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 1757-1766
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
133
-
-
0028986829
-
Polyadenylylation helps regulate mRNA decay in Escherichia coli
-
7534403
-
O'Hara EB, Chekanova JA, Ingle CA, Kushner ZR, Peters E, Kushner SR (1995) Polyadenylylation helps regulate mRNA decay in Escherichia coli. Proc Natl Acad Sci USA 92:1807-1811
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 1807-1811
-
-
O'Hara, E.B.1
Chekanova, J.A.2
Ingle, C.A.3
Kushner, Z.R.4
Peters, E.5
Kushner, S.R.6
-
135
-
-
0017648969
-
Purification and characterization of polynucleotide phosphorylase from Escherichia coli. Probe for the analysis of 3?sequences of RNA
-
330538
-
Soreq H, Littauer UZ (1977) Purification and characterization of polynucleotide phosphorylase from Escherichia coli. Probe for the analysis of 3?sequences of RNA. J Biol Chem 252:6885-6888
-
(1977)
J Biol Chem
, vol.252
, pp. 6885-6888
-
-
Soreq, H.1
Littauer, U.Z.2
-
136
-
-
0018332381
-
Cellular applications of 31P and 13C nuclear magnetic resonance
-
36664
-
Shulman RG, Brown TR, Ugurbil K, Ogawa S, Cohen SM, den Hollander JA (1979) Cellular applications of 31P and 13C nuclear magnetic resonance. Science 205:160-166
-
(1979)
Science
, vol.205
, pp. 160-166
-
-
Shulman, R.G.1
Brown, T.R.2
Ugurbil, K.3
Ogawa, S.4
Cohen, S.M.5
Den Hollander, J.A.6
-
137
-
-
0034710943
-
Polynucleotide phosphorylase functions both as a 3?right-arrow 5?exonuclease and a poly(A) polymerase in Escherichia coli
-
11035800
-
Mohanty BK, Kushner SR (2000) Polynucleotide phosphorylase functions both as a 3?right-arrow 5?exonuclease and a poly(A) polymerase in Escherichia coli. Proc Natl Acad Sci USA 97:11966-11971
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11966-11971
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
138
-
-
21844443073
-
Addition of poly(A) and heteropolymeric 3?ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains
-
15995184
-
Campos-Guillen J, Bralley P, Jones GH, Bechhofer DH, Olmedo-Alvarez G (2005) Addition of poly(A) and heteropolymeric 3?ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains. J Bacteriol 187:4698-4706
-
(2005)
J Bacteriol
, vol.187
, pp. 4698-4706
-
-
Campos-Guillen, J.1
Bralley, P.2
Jones, G.H.3
Bechhofer, D.H.4
Olmedo-Alvarez, G.5
-
139
-
-
0036267108
-
CDNA cloning confirms the polyadenylation of RNA decay intermediates in Streptomyces coelicolor
-
11988516
-
Bralley P, Jones GH (2002) cDNA cloning confirms the polyadenylation of RNA decay intermediates in Streptomyces coelicolor. Microbiology 148:1421-1425
-
(2002)
Microbiology
, vol.148
, pp. 1421-1425
-
-
Bralley, P.1
Jones, G.H.2
-
140
-
-
0038182527
-
RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli
-
12601000
-
Rott R, Zipor G, Portnoy V, Liveanu V, Schuster G (2003) RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli. J Biol Chem 278:15771-15777
-
(2003)
J Biol Chem
, vol.278
, pp. 15771-15777
-
-
Rott, R.1
Zipor, G.2
Portnoy, V.3
Liveanu, V.4
Schuster, G.5
-
141
-
-
42649140571
-
Mycoplasma gallisepticum as the first analyzed bacterium in which RNA is not polyadenylated
-
18399989
-
Portnoy V, Schuster G (2008) Mycoplasma gallisepticum as the first analyzed bacterium in which RNA is not polyadenylated. FEMS Microbiol Lett 283:97-103
-
(2008)
FEMS Microbiol Lett
, vol.283
, pp. 97-103
-
-
Portnoy, V.1
Schuster, G.2
-
142
-
-
33645106095
-
RNA 3?-tail synthesis in Streptomyces: In vitro and in vivo activities of RNase PH, the SCO3896 gene product and polynucleotide phosphorylase
-
16514143
-
Bralley P, Gust B, Chang S, Chater KF, Jones GH (2006) RNA 3?-tail synthesis in Streptomyces: in vitro and in vivo activities of RNase PH, the SCO3896 gene product and polynucleotide phosphorylase. Microbiology 152:627-636
-
(2006)
Microbiology
, vol.152
, pp. 627-636
-
-
Bralley, P.1
Gust, B.2
Chang, S.3
Chater, K.F.4
Jones, G.H.5
-
143
-
-
77954358026
-
Initiation of decay of Bacillus subtilis rpsO mRNA by endoribonuclease RNase y
-
20418391
-
Yao S, Bechhofer DH (2010) Initiation of decay of Bacillus subtilis rpsO mRNA by endoribonuclease RNase Y. J Bacteriol 192:3279-3286
-
(2010)
J Bacteriol
, vol.192
, pp. 3279-3286
-
-
Yao, S.1
Bechhofer, D.H.2
-
144
-
-
0033548140
-
Polyadenylation promotes degradation of 3?-structured RNA by the Escherichia coli mRNA degradosome in vitro
-
9933592
-
Blum E, Carpousis AJ, Higgins CF (1999) Polyadenylation promotes degradation of 3?-structured RNA by the Escherichia coli mRNA degradosome in vitro. J Biol Chem 274:4009-4016
-
(1999)
J Biol Chem
, vol.274
, pp. 4009-4016
-
-
Blum, E.1
Carpousis, A.J.2
Higgins, C.F.3
-
145
-
-
0032617132
-
Degradation of mRNA in Escherichia coli: An old problem with some new twists
-
9932452
-
Coburn GA, Mackie GA (1999) Degradation of mRNA in Escherichia coli: an old problem with some new twists. Prog Nucleic Acid Res Mol Biol 62:55-108
-
(1999)
Prog Nucleic Acid Res Mol Biol
, vol.62
, pp. 55-108
-
-
Coburn, G.A.1
Mackie, G.A.2
-
146
-
-
0032544304
-
In the absence of translation, RNase e can bypass 5?mRNA stabilizers in Escherichia coli
-
9735284
-
Joyce SA, Dreyfus M (1998) In the absence of translation, RNase E can bypass 5?mRNA stabilizers in Escherichia coli. J Mol Biol 282:241-254
-
(1998)
J Mol Biol
, vol.282
, pp. 241-254
-
-
Joyce, S.A.1
Dreyfus, M.2
-
147
-
-
0033636189
-
Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
-
11115119
-
Ow MC, Liu Q, Kushner SR (2000) Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Mol Microbiol 38:854-866
-
(2000)
Mol Microbiol
, vol.38
, pp. 854-866
-
-
Ow, M.C.1
Liu, Q.2
Kushner, S.R.3
-
148
-
-
0036047092
-
Function in Escherichia coli of the non-catalytic part of RNase E: Role in the degradation of ribosome-free mRNA
-
12207692
-
Leroy A, Vanzo NF, Sousa S, Dreyfus M, Carpousis AJ (2002) Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. Mol Microbiol 45:1231-1243
-
(2002)
Mol Microbiol
, vol.45
, pp. 1231-1243
-
-
Leroy, A.1
Vanzo, N.F.2
Sousa, S.3
Dreyfus, M.4
Carpousis, A.J.5
-
149
-
-
0034005317
-
Regions of RNase e important for 5?-end-dependent RNA cleavage and autoregulated synthesis
-
10762247
-
Jiang X, Diwa A, Belasco JG (2000) Regions of RNase E important for 5?-end-dependent RNA cleavage and autoregulated synthesis. J Bacteriol 182:2468-2475
-
(2000)
J Bacteriol
, vol.182
, pp. 2468-2475
-
-
Jiang, X.1
Diwa, A.2
Belasco, J.G.3
-
150
-
-
24944507588
-
RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
-
16166379
-
Morita T, Maki K, Aiba H (2005) RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev 19:2176-2186
-
(2005)
Genes Dev
, vol.19
, pp. 2176-2186
-
-
Morita, T.1
Maki, K.2
Aiba, H.3
-
151
-
-
33645508496
-
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction
-
16549791
-
Morita T, Mochizuki Y, Aiba H (2006) Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction. Proc Natl Acad Sci USA 103:4858-4863
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4858-4863
-
-
Morita, T.1
Mochizuki, Y.2
Aiba, H.3
-
152
-
-
77951539769
-
Rapid cleavage of RNA by RNase e in the absence of 5?monophosphate stimulation
-
19889093
-
Kime L, Jourdan SS, Stead JA, Hidalgo-Sastre A, McDowall KJ (2010) Rapid cleavage of RNA by RNase E in the absence of 5?monophosphate stimulation. Mol Microbiol 76:590-604
-
(2010)
Mol Microbiol
, vol.76
, pp. 590-604
-
-
Kime, L.1
Jourdan, S.S.2
Stead, J.A.3
Hidalgo-Sastre, A.4
McDowall, K.J.5
-
153
-
-
64149115902
-
RNase e autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5?untranslated region
-
19320830
-
Schuck A, Diwa A, Belasco JG (2009) RNase E autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5?untranslated region. Mol Microbiol 72:470-478
-
(2009)
Mol Microbiol
, vol.72
, pp. 470-478
-
-
Schuck, A.1
Diwa, A.2
Belasco, J.G.3
-
154
-
-
84872244472
-
Bacillus subtilis RNase y activity in vivo analysed by tiling microarrays
-
23326572
-
Laalami S, Bessieres P, Rocca A, Zig L, Nicolas P, Putzer H (2013) Bacillus subtilis RNase Y activity in vivo analysed by tiling microarrays. PLoS One 8:e54062
-
(2013)
PLoS One
, vol.8
, pp. 54062
-
-
Laalami, S.1
Bessieres, P.2
Rocca, A.3
Zig, L.4
Nicolas, P.5
Putzer, H.6
-
155
-
-
80052698341
-
RNA processing in Bacillus subtilis: Identification of targets of the essential RNase y
-
21815947
-
Lehnik-Habrink M, Schaffer M, Mader U, Diethmaier C, Herzberg C, Stulke J (2011) RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. Mol Microbiol 81:1459-1473
-
(2011)
Mol Microbiol
, vol.81
, pp. 1459-1473
-
-
Lehnik-Habrink, M.1
Schaffer, M.2
Mader, U.3
Diethmaier, C.4
Herzberg, C.5
Stulke, J.6
-
156
-
-
80052721283
-
RNase y is responsible for uncoupling the expression of translation factor IF3 from that of the ribosomal proteins L35 and L20 in Bacillus subtilis
-
21843271
-
Bruscella P, Shahbabian K, Laalami S, Putzer H (2011) RNase Y is responsible for uncoupling the expression of translation factor IF3 from that of the ribosomal proteins L35 and L20 in Bacillus subtilis. Mol Microbiol 81:1526-1541
-
(2011)
Mol Microbiol
, vol.81
, pp. 1526-1541
-
-
Bruscella, P.1
Shahbabian, K.2
Laalami, S.3
Putzer, H.4
-
157
-
-
84856043718
-
BsrG/SR4 from Bacillus subtilis - The first temperature-dependent type i toxin-antitoxin system
-
22229825
-
Jahn N, Preis H, Wiedemann C, Brantl S (2012) BsrG/SR4 from Bacillus subtilis - the first temperature-dependent type I toxin-antitoxin system. Mol Microbiol 83:579-598
-
(2012)
Mol Microbiol
, vol.83
, pp. 579-598
-
-
Jahn, N.1
Preis, H.2
Wiedemann, C.3
Brantl, S.4
-
158
-
-
80655143410
-
Decay of a model mRNA in Bacillus subtilis by a combination of RNase J1 5?exonuclease and RNase y endonuclease activities
-
21908660
-
Yao S, Richards J, Belasco JG, Bechhofer DH (2011) Decay of a model mRNA in Bacillus subtilis by a combination of RNase J1 5?exonuclease and RNase Y endonuclease activities. J Bacteriol 193:6384-6386
-
(2011)
J Bacteriol
, vol.193
, pp. 6384-6386
-
-
Yao, S.1
Richards, J.2
Belasco, J.G.3
Bechhofer, D.H.4
-
159
-
-
38349167848
-
Phosphodiesterase activity of CvfA is required for virulence in Staphylococcus aureus
-
17951247
-
Nagata M, Kaito C, Sekimizu K (2008) Phosphodiesterase activity of CvfA is required for virulence in Staphylococcus aureus. J Biol Chem 283:2176-2184
-
(2008)
J Biol Chem
, vol.283
, pp. 2176-2184
-
-
Nagata, M.1
Kaito, C.2
Sekimizu, K.3
-
160
-
-
74349083666
-
Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour
-
20025672
-
Mathy N, Hebert A, Mervelet P, Benard L, Dorleans A, Li de la Sierra-Gallay I, Noirot P, Putzer H, Condon C (2010) Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour. Mol Microbiol 75:489-498
-
(2010)
Mol Microbiol
, vol.75
, pp. 489-498
-
-
Mathy, N.1
Hebert, A.2
Mervelet, P.3
Benard, L.4
Dorleans, A.5
Li De La Sierra-Gallay, I.6
Noirot, P.7
Putzer, H.8
Condon, C.9
-
161
-
-
0030015489
-
Processing of the leader mRNA plays a major role in the induction of thrS expression following threonine starvation in Bacillus subtilis
-
8692931
-
Condon C, Putzer H, Grunberg-Manago M (1996) Processing of the leader mRNA plays a major role in the induction of thrS expression following threonine starvation in Bacillus subtilis. Proc Natl Acad Sci USA 93:6992-6997
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 6992-6997
-
-
Condon, C.1
Putzer, H.2
Grunberg-Manago, M.3
-
162
-
-
34547842522
-
Processing of Bacillus subtilis small cytoplasmic RNA: Evidence for an additional endonuclease cleavage site
-
17576666
-
Yao S, Blaustein JB, Bechhofer DH (2007) Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site. Nucleic Acids Res 35:4464-4473
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4464-4473
-
-
Yao, S.1
Blaustein, J.B.2
Bechhofer, D.H.3
-
163
-
-
51649091711
-
MRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale
-
18713320
-
Mäder U, Zig L, Kretschmer J, Homuth G, Putzer H (2008) mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol Microbiol 70:183-196
-
(2008)
Mol Microbiol
, vol.70
, pp. 183-196
-
-
Mäder, U.1
Zig, L.2
Kretschmer, J.3
Homuth, G.4
Putzer, H.5
-
164
-
-
70350374351
-
Bacillus subtilis trp Leader RNA: RNase J1 endonuclease cleavage specificity and PNPase processing
-
19638340
-
Deikus G, Bechhofer DH (2009) Bacillus subtilis trp Leader RNA: RNase J1 endonuclease cleavage specificity and PNPase processing. J Biol Chem 284:26394-26401
-
(2009)
J Biol Chem
, vol.284
, pp. 26394-26401
-
-
Deikus, G.1
Bechhofer, D.H.2
-
165
-
-
78649389160
-
Regulation of virulence gene expression in Streptococcus pyogenes: Determinants of differential mRNA decay
-
Bugrysheva JV, Scott JR (2010) Regulation of virulence gene expression in Streptococcus pyogenes: determinants of differential mRNA decay. RNA Biol 7:64-67
-
(2010)
RNA Biol
, vol.7
, pp. 64-67
-
-
Bugrysheva, J.V.1
Scott, J.R.2
-
166
-
-
33749645818
-
Functional analysis of 11 putative essential genes in Bacillus subtilis
-
17005971
-
Hunt A, Rawlins JP, Thomaides HB, Errington J (2006) Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology 152:2895-2907
-
(2006)
Microbiology
, vol.152
, pp. 2895-2907
-
-
Hunt, A.1
Rawlins, J.P.2
Thomaides, H.B.3
Errington, J.4
-
167
-
-
27644482393
-
Lost in translation: The influence of ribosomes on bacterial mRNA decay
-
16264189
-
Deana A, Belasco JG (2005) Lost in translation: the influence of ribosomes on bacterial mRNA decay. Genes Dev 19:2526-2533
-
(2005)
Genes Dev
, vol.19
, pp. 2526-2533
-
-
Deana, A.1
Belasco, J.G.2
-
168
-
-
0032541436
-
Ribosomes inhibit an RNase e cleavage which induces the decay of the rpsO mRNA of Escherichia coli
-
9707438
-
Braun F, Le Derout J, Regnier P (1998) Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli. EMBO J 17:4790-4797
-
(1998)
EMBO J
, vol.17
, pp. 4790-4797
-
-
Braun, F.1
Le Derout, J.2
Regnier, P.3
-
170
-
-
56649103929
-
Translation affects YoeB and MazF messenger RNA interferase activities by different mechanisms
-
18854355
-
Christensen-Dalsgaard M, Gerdes K (2008) Translation affects YoeB and MazF messenger RNA interferase activities by different mechanisms. Nucleic Acids Res 36:6472-6481
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6472-6481
-
-
Christensen-Dalsgaard, M.1
Gerdes, K.2
-
171
-
-
0026061856
-
Effects of translation on degradation of mRNA segments transcribed from the polycistronic puf operon of Rhodobacter capsulatus
-
1995592
-
Klug G, Cohen SN (1991) Effects of translation on degradation of mRNA segments transcribed from the polycistronic puf operon of Rhodobacter capsulatus. J Bacteriol 173:1478-1484
-
(1991)
J Bacteriol
, vol.173
, pp. 1478-1484
-
-
Klug, G.1
Cohen, S.N.2
-
172
-
-
0023378033
-
Effect of premature termination of translation on mRNA stability depends on the site of ribosome release
-
2440033
-
Nilsson G, Belasco JG, Cohen SN, von Gabain A (1987) Effect of premature termination of translation on mRNA stability depends on the site of ribosome release. Proc Natl Acad Sci USA 84:4890-4894
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 4890-4894
-
-
Nilsson, G.1
Belasco, J.G.2
Cohen, S.N.3
Von Gabain, A.4
-
173
-
-
0028905847
-
Identification of an mRNA element promoting rate-limiting cleavage of the polycistronic puf mRNA in Rhodobacter capsulatus by an enzyme similar to RNase e
-
7542724
-
Fritsch J, Rothfuchs R, Rauhut R, Klug G (1995) Identification of an mRNA element promoting rate-limiting cleavage of the polycistronic puf mRNA in Rhodobacter capsulatus by an enzyme similar to RNase E. Mol Microbiol 15:1017-1029
-
(1995)
Mol Microbiol
, vol.15
, pp. 1017-1029
-
-
Fritsch, J.1
Rothfuchs, R.2
Rauhut, R.3
Klug, G.4
-
174
-
-
0344394998
-
Inactivation of the decay pathway initiated at an internal site by RNase e promotes poly(A)-dependent degradation of the rpsO mRNA in Escherichia coli
-
14622415
-
Marujo PE, Braun F, Haugel-Nielsen J, Le Derout J, Arraiano CM, Regnier P (2003) Inactivation of the decay pathway initiated at an internal site by RNase E promotes poly(A)-dependent degradation of the rpsO mRNA in Escherichia coli. Mol Microbiol 50:1283-1294
-
(2003)
Mol Microbiol
, vol.50
, pp. 1283-1294
-
-
Marujo, P.E.1
Braun, F.2
Haugel-Nielsen, J.3
Le Derout, J.4
Arraiano, C.M.5
Regnier, P.6
-
176
-
-
0001586074
-
The instability of messenger RNA in bacteria
-
W. Reznikoff L. Gold (eds) Butterworth Boston
-
Kennell D (1986) The instability of messenger RNA in bacteria. In: Reznikoff W, Gold L (eds) Maximizing gene expression. Butterworth, Boston, pp 101-142
-
(1986)
Maximizing Gene Expression
, pp. 101-142
-
-
Kennell, D.1
-
177
-
-
0031824037
-
The stability of mRNA from the gsiB gene of Bacillus subtilis is dependent on the presence of a strong ribosome binding site
-
9669336
-
Jurgen B, Schweder T, Hecker M (1998) The stability of mRNA from the gsiB gene of Bacillus subtilis is dependent on the presence of a strong ribosome binding site. Mol Gen Genet: MGG 258:538-545
-
(1998)
Mol Gen Genet: MGG
, vol.258
, pp. 538-545
-
-
Jurgen, B.1
Schweder, T.2
Hecker, M.3
-
178
-
-
0027480916
-
Initiation of mRNA decay in Bacillus subtilis
-
7682278
-
DiMari JF, Bechhofer DH (1993) Initiation of mRNA decay in Bacillus subtilis. Mol Microbiol 7:705-717
-
(1993)
Mol Microbiol
, vol.7
, pp. 705-717
-
-
Dimari, J.F.1
Bechhofer, D.H.2
-
179
-
-
0029041956
-
A polypurine sequence that acts as a 5?mRNA stabilizer in Bacillus subtilis
-
7539420
-
Hue KK, Cohen SD, Bechhofer DH (1995) A polypurine sequence that acts as a 5?mRNA stabilizer in Bacillus subtilis. J Bacteriol 177:3465-3471
-
(1995)
J Bacteriol
, vol.177
, pp. 3465-3471
-
-
Hue, K.K.1
Cohen, S.D.2
Bechhofer, D.H.3
-
180
-
-
62449224615
-
Ribosomes initiating translation of the hbs mRNA protect it from 5?-to-3?exoribonucleolytic degradation by RNase J1
-
19210617
-
Daou-Chabo R, Mathy N, Benard L, Condon C (2009) Ribosomes initiating translation of the hbs mRNA protect it from 5?-to-3?exoribonucleolytic degradation by RNase J1. Mol Microbiol 71:1538-1550
-
(2009)
Mol Microbiol
, vol.71
, pp. 1538-1550
-
-
Daou-Chabo, R.1
Mathy, N.2
Benard, L.3
Condon, C.4
-
181
-
-
84866623270
-
An effort to make sense of antisense transcription in bacteria
-
22858676
-
Lasa I, Toledo-Arana A, Gingeras TR (2012) An effort to make sense of antisense transcription in bacteria. RNA Biol 9:1039-1044
-
(2012)
RNA Biol
, vol.9
, pp. 1039-1044
-
-
Lasa, I.1
Toledo-Arana, A.2
Gingeras, T.R.3
-
182
-
-
84857683425
-
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
-
22383849
-
Nicolas P, Mader U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Hartig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rugheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stulke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Volker U, Bessieres P, Noirot P (2012) Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science 335:1103-1106
-
(2012)
Science
, vol.335
, pp. 1103-1106
-
-
Nicolas, P.1
Mader, U.2
Dervyn, E.3
Rochat, T.4
Leduc, A.5
Pigeonneau, N.6
Bidnenko, E.7
Marchadier, E.8
Hoebeke, M.9
Aymerich, S.10
Becher, D.11
Bisicchia, P.12
Botella, E.13
Delumeau, O.14
Doherty, G.15
Denham, E.L.16
Fogg, M.J.17
Fromion, V.18
Goelzer, A.19
Hansen, A.20
Hartig, E.21
Harwood, C.R.22
Homuth, G.23
Jarmer, H.24
Jules, M.25
Klipp, E.26
Le Chat, L.27
Lecointe, F.28
Lewis, P.29
Liebermeister, W.30
March, A.31
Mars, R.A.32
Nannapaneni, P.33
Noone, D.34
Pohl, S.35
Rinn, B.36
Rugheimer, F.37
Sappa, P.K.38
Samson, F.39
Schaffer, M.40
Schwikowski, B.41
Steil, L.42
Stulke, J.43
Wiegert, T.44
Devine, K.M.45
Wilkinson, A.J.46
Van Dijl, J.M.47
Hecker, M.48
Volker, U.49
Bessieres, P.50
Noirot, P.51
more..
-
183
-
-
41049097536
-
Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli
-
18284591
-
Li X, Yagi M, Morita T, Aiba H (2008) Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli. Mol Microbiol 68:462-473
-
(2008)
Mol Microbiol
, vol.68
, pp. 462-473
-
-
Li, X.1
Yagi, M.2
Morita, T.3
Aiba, H.4
-
185
-
-
3042691769
-
HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli
-
15186427
-
Koo JT, Choe J, Moseley SL (2004) HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli. Mol Microbiol 52:1813-1826
-
(2004)
Mol Microbiol
, vol.52
, pp. 1813-1826
-
-
Koo, J.T.1
Choe, J.2
Moseley, S.L.3
-
186
-
-
0028269435
-
Copurification of E coli RNAse e and PNPase: Evidence for a specific association between two enzymes important in mRNA processing and degradation
-
7510217
-
Carpousis AJ, Van Houwe G, Ehretsmann C, Krisch HM (1994) Copurification of E. coli RNAse E and PNPase: evidence for a specific association between two enzymes important in mRNA processing and degradation. Cell 76:889-900
-
(1994)
Cell
, vol.76
, pp. 889-900
-
-
Carpousis, A.J.1
Van Houwe, G.2
Ehretsmann, C.3
Krisch, H.M.4
-
187
-
-
0027945686
-
A protein complex mediating mRNA degradation in Escherichia coli
-
7891559
-
Py B, Causton H, Mudd EA, Higgins CF (1994) A protein complex mediating mRNA degradation in Escherichia coli. Mol Microbiol 14:717-729
-
(1994)
Mol Microbiol
, vol.14
, pp. 717-729
-
-
Py, B.1
Causton, H.2
Mudd, E.A.3
Higgins, C.F.4
-
188
-
-
33645097025
-
Recognition of enolase in the Escherichia coli RNA degradosome
-
16516921
-
Chandran V, Luisi BF (2006) Recognition of enolase in the Escherichia coli RNA degradosome. J Mol Biol 358:8-15
-
(2006)
J Mol Biol
, vol.358
, pp. 8-15
-
-
Chandran, V.1
Luisi, B.F.2
-
189
-
-
0035793043
-
RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease e
-
11134527
-
Liou GG, Jane WN, Cohen SN, Lin NS, Lin-Chao S (2001) RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E. Proc Natl Acad Sci USA 98:63-68
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 63-68
-
-
Liou, G.G.1
Jane, W.N.2
Cohen, S.N.3
Lin, N.S.4
Lin-Chao, S.5
-
190
-
-
77954388432
-
The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phase
-
20472786
-
Carabetta VJ, Silhavy TJ, Cristea IM (2010) The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phase. J Bacteriol 192:3713-3721
-
(2010)
J Bacteriol
, vol.192
, pp. 3713-3721
-
-
Carabetta, V.J.1
Silhavy, T.J.2
Cristea, I.M.3
-
191
-
-
84877923285
-
Functions of DEAD-box proteins in bacteria: Current knowledge and pending questions
-
23415794
-
Iost I, Bizebard T, Dreyfus M (2013) Functions of DEAD-box proteins in bacteria: current knowledge and pending questions. Biochim Biophys Acta 1829:866-877
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 866-877
-
-
Iost, I.1
Bizebard, T.2
Dreyfus, M.3
-
192
-
-
9644277144
-
The RNase e of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: Functional replacement of RhlB by RhlE
-
15554979
-
Khemici V, Toesca I, Poljak L, Vanzo NF, Carpousis AJ (2004) The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: functional replacement of RhlB by RhlE. Mol Microbiol 54:1422-1430
-
(2004)
Mol Microbiol
, vol.54
, pp. 1422-1430
-
-
Khemici, V.1
Toesca, I.2
Poljak, L.3
Vanzo, N.F.4
Carpousis, A.J.5
-
193
-
-
9644284618
-
Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: Evidence for a 'cold shock degradosome'
-
15554978
-
Prud'homme-Genereux A, Beran RK, Iost I, Ramey CS, Mackie GA, Simons RW (2004) Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'. Mol Microbiol 54:1409-1421
-
(2004)
Mol Microbiol
, vol.54
, pp. 1409-1421
-
-
Prud'Homme-Genereux, A.1
Beran, R.K.2
Iost, I.3
Ramey, C.S.4
Mackie, G.A.5
Simons, R.W.6
-
194
-
-
0029922992
-
A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
-
8610017
-
Py B, Higgins CF, Krisch HM, Carpousis AJ (1996) A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381:169-172
-
(1996)
Nature
, vol.381
, pp. 169-172
-
-
Py, B.1
Higgins, C.F.2
Krisch, H.M.3
Carpousis, A.J.4
-
195
-
-
8544261105
-
Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli
-
15522087
-
Morita T, Kawamoto H, Mizota T, Inada T, Aiba H (2004) Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli. Mol Microbiol 54:1063-1075
-
(2004)
Mol Microbiol
, vol.54
, pp. 1063-1075
-
-
Morita, T.1
Kawamoto, H.2
Mizota, T.3
Inada, T.4
Aiba, H.5
-
196
-
-
78651067735
-
Hfq binding at RhlB-recognition region of RNase e is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
-
21219461
-
Ikeda Y, Yagi M, Morita T, Aiba H (2011) Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli. Mol Microbiol 79:419-432
-
(2011)
Mol Microbiol
, vol.79
, pp. 419-432
-
-
Ikeda, Y.1
Yagi, M.2
Morita, T.3
Aiba, H.4
-
197
-
-
85011939098
-
Unraveling new roles for minor components of the E coli RNA degradosome
-
19667755
-
Kaberdin VR, Lin-Chao S (2009) Unraveling new roles for minor components of the E. coli RNA degradosome. RNA Biol 6:402-405
-
(2009)
RNA Biol
, vol.6
, pp. 402-405
-
-
Kaberdin, V.R.1
Lin-Chao, S.2
-
198
-
-
0029976430
-
Proteins associated with RNAse e in a multicomponent ribonucleolytic complex
-
8632981
-
Miczak A, Kaberdin VR, Wei C-L, Lin-Chao S (1996) Proteins associated with RNAse E in a multicomponent ribonucleolytic complex. Proc Natl Acad Sci USA 93:3865-3869
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 3865-3869
-
-
Miczak, A.1
Kaberdin, V.R.2
Wei, C.-L.3
Lin-Chao, S.4
-
199
-
-
58849112297
-
Regulation of ribonuclease e activity by the L4 ribosomal protein of Escherichia coli
-
19144914
-
Singh D, Chang SJ, Lin PH, Averina OV, Kaberdin VR, Lin-Chao S (2009) Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli. Proc Natl Acad Sci USA 106:864-869
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 864-869
-
-
Singh, D.1
Chang, S.J.2
Lin, P.H.3
Averina, O.V.4
Kaberdin, V.R.5
Lin-Chao, S.6
-
200
-
-
0030779484
-
Polyphosphate kinase is a component of the Escherichia coli RNA degradosome
-
9383162
-
Blum E, Py B, Carpousis AJ, Higgins CF (1997) Polyphosphate kinase is a component of the Escherichia coli RNA degradosome. Mol Microbiol 26:387-398
-
(1997)
Mol Microbiol
, vol.26
, pp. 387-398
-
-
Blum, E.1
Py, B.2
Carpousis, A.J.3
Higgins, C.F.4
-
201
-
-
77957833370
-
Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB interaction in the gammaproteobacteria
-
20729366
-
Ait-Bara S, Carpousis AJ (2010) Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: conservation of the RNase E-RhlB interaction in the gammaproteobacteria. J Bacteriol 192:5413-5423
-
(2010)
J Bacteriol
, vol.192
, pp. 5413-5423
-
-
Ait-Bara, S.1
Carpousis, A.J.2
-
202
-
-
17644380001
-
Exoribonuclease R interacts with endoribonuclease e and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W
-
15705581
-
Purusharth RI, Klein F, Sulthana S, Jager S, Jagannadham MV, Evguenieva-Hackenberg E, Ray MK, Klug G (2005) Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W. J Biol Chem 280:14572-14578
-
(2005)
J Biol Chem
, vol.280
, pp. 14572-14578
-
-
Purusharth, R.I.1
Klein, F.2
Sulthana, S.3
Jager, S.4
Jagannadham, M.V.5
Evguenieva-Hackenberg, E.6
Ray, M.K.7
Klug, G.8
-
203
-
-
12344330602
-
An important role for RNase R in mRNA decay
-
15664199
-
Cheng ZF, Deutscher MP (2005) An important role for RNase R in mRNA decay. Mol Cell 17:313-318
-
(2005)
Mol Cell
, vol.17
, pp. 313-318
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
204
-
-
0035890909
-
An mRNA degrading complex in Rhodobacter capsulatus
-
11713307
-
Jager S, Fuhrmann O, Heck C, Hebermehl M, Schiltz E, Rauhut R, Klug G (2001) An mRNA degrading complex in Rhodobacter capsulatus. Nucleic Acids Res 29:4581-4588
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4581-4588
-
-
Jager, S.1
Fuhrmann, O.2
Heck, C.3
Hebermehl, M.4
Schiltz, E.5
Rauhut, R.6
Klug, G.7
-
206
-
-
34249815828
-
Iron-dependent RNA-binding activity of Mycobacterium tuberculosis aconitase
-
17384188
-
Banerjee S, Nandyala AK, Raviprasad P, Ahmed N, Hasnain SE (2007) Iron-dependent RNA-binding activity of Mycobacterium tuberculosis aconitase. J Bacteriol 189:4046-4052
-
(2007)
J Bacteriol
, vol.189
, pp. 4046-4052
-
-
Banerjee, S.1
Nandyala, A.K.2
Raviprasad, P.3
Ahmed, N.4
Hasnain, S.E.5
-
207
-
-
80053594659
-
RNase y in Bacillus subtilis: A natively disordered protein that is the functional equivalent of RNase e from Escherichia coli
-
21803996
-
Lehnik-Habrink M, Newman J, Rothe FM, Solovyova AS, Rodrigues C, Herzberg C, Commichau FM, Lewis RJ, Stulke J (2011) RNase Y in Bacillus subtilis: a natively disordered protein that is the functional equivalent of RNase E from Escherichia coli. J Bacteriol 193:5431-5441
-
(2011)
J Bacteriol
, vol.193
, pp. 5431-5441
-
-
Lehnik-Habrink, M.1
Newman, J.2
Rothe, F.M.3
Solovyova, A.S.4
Rodrigues, C.5
Herzberg, C.6
Commichau, F.M.7
Lewis, R.J.8
Stulke, J.9
-
208
-
-
77955351104
-
The RNA degradosome in Bacillus subtilis: Identification of CshA as the major RNA helicase in the multiprotein complex
-
Lehnik-Habrink M, Pfortner H, Rempeters L, Pietack N, Herzberg C, Stülke J (2010) The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complex. Mol Microbiol 77:958-971
-
(2010)
Mol Microbiol
, vol.77
, pp. 958-971
-
-
Lehnik-Habrink, M.1
Pfortner, H.2
Rempeters, L.3
Pietack, N.4
Herzberg, C.5
Stülke, J.6
-
209
-
-
84856462779
-
Dissection of the network of interactions that links RNA processing with glycolysis in the Bacillus subtilis degradosome
-
22198292
-
Newman JA, Hewitt L, Rodrigues C, Solovyova AS, Harwood CR, Lewis RJ (2012) Dissection of the network of interactions that links RNA processing with glycolysis in the Bacillus subtilis degradosome. J Mol Biol 416:121-136
-
(2012)
J Mol Biol
, vol.416
, pp. 121-136
-
-
Newman, J.A.1
Hewitt, L.2
Rodrigues, C.3
Solovyova, A.S.4
Harwood, C.R.5
Lewis, R.J.6
-
210
-
-
80053608322
-
Characterization of components of the Staphylococcus aureus mRNA degradosome holoenzyme-like complex
-
21764917
-
Roux CM, DeMuth JP, Dunman PM (2011) Characterization of components of the Staphylococcus aureus mRNA degradosome holoenzyme-like complex. J Bacteriol 193:5520-5526
-
(2011)
J Bacteriol
, vol.193
, pp. 5520-5526
-
-
Roux, C.M.1
Demuth, J.P.2
Dunman, P.M.3
-
211
-
-
84871762875
-
A minimal bacterial RNase J-based degradosome is associated with translating ribosomes
-
23093592
-
Redko Y, Aubert S, Stachowicz A, Lenormand P, Namane A, Darfeuille F, Thibonnier M, De Reuse H (2013) A minimal bacterial RNase J-based degradosome is associated with translating ribosomes. Nucleic Acids Res 41:288-301
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 288-301
-
-
Redko, Y.1
Aubert, S.2
Stachowicz, A.3
Lenormand, P.4
Namane, A.5
Darfeuille, F.6
Thibonnier, M.7
De Reuse, H.8
-
212
-
-
0034650186
-
Conserved features of y RNAs: A comparison of experimentally derived secondary structures
-
10606662
-
Teunissen SW, Kruithof MJ, Farris AD, Harley JB, Venrooij WJ, Pruijn GJ (2000) Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. Nucleic Acids Res 28:610-619
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 610-619
-
-
Teunissen, S.W.1
Kruithof, M.J.2
Farris, A.D.3
Harley, J.B.4
Venrooij, W.J.5
Pruijn, G.J.6
-
213
-
-
84875751957
-
An RNA degradation machine sculpted by ro autoantigen and noncoding RNA
-
23540697
-
Chen X, Taylor DW, Fowler CC, Galan JE, Wang HW, Wolin SL (2013) An RNA degradation machine sculpted by ro autoantigen and noncoding RNA. Cell 153:166-177
-
(2013)
Cell
, vol.153
, pp. 166-177
-
-
Chen, X.1
Taylor, D.W.2
Fowler, C.C.3
Galan, J.E.4
Wang, H.W.5
Wolin, S.L.6
-
214
-
-
0034511875
-
Dynamic localization of bacterial and plasmid chromosomes
-
11092821
-
Hiraga S (2000) Dynamic localization of bacterial and plasmid chromosomes. Annu Rev Genet 34:21-59
-
(2000)
Annu Rev Genet
, vol.34
, pp. 21-59
-
-
Hiraga, S.1
-
215
-
-
79954570710
-
RNA localization in bacteria
-
21354362
-
Keiler KC (2011) RNA localization in bacteria. Curr Opin Microbiol 14:155-159
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 155-159
-
-
Keiler, K.C.1
-
216
-
-
70849086538
-
Why and how bacteria localize proteins
-
19965466
-
Shapiro L, McAdams HH, Losick R (2009) Why and how bacteria localize proteins. Science 326:1225-1228
-
(2009)
Science
, vol.326
, pp. 1225-1228
-
-
Shapiro, L.1
McAdams, H.H.2
Losick, R.3
-
217
-
-
3042548402
-
Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication
-
15178755
-
Viollier PH, Thanbichler M, McGrath PT, West L, Meewan M, McAdams HH, Shapiro L (2004) Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication. Proc Natl Acad Sci USA 101:9257-9262
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9257-9262
-
-
Viollier, P.H.1
Thanbichler, M.2
McGrath, P.T.3
West, L.4
Meewan, M.5
McAdams, H.H.6
Shapiro, L.7
-
218
-
-
54249138245
-
The RNase e of Escherichia coli is a membrane-binding protein
-
18976283
-
Khemici V, Poljak L, Luisi BF, Carpousis AJ (2008) The RNase E of Escherichia coli is a membrane-binding protein. Mol Microbiol 70:799-813
-
(2008)
Mol Microbiol
, vol.70
, pp. 799-813
-
-
Khemici, V.1
Poljak, L.2
Luisi, B.F.3
Carpousis, A.J.4
-
219
-
-
84860808515
-
Membrane binding of Escherichia coli RNase e catalytic domain stabilizes protein structure and increases RNA substrate affinity
-
22509045
-
Murashko ON, Kaberdin VR, Lin-Chao S (2012) Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity. Proc Natl Acad Sci USA 109:7019-7024
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 7019-7024
-
-
Murashko, O.N.1
Kaberdin, V.R.2
Lin-Chao, S.3
-
220
-
-
33846818898
-
RNase e and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton
-
17242352
-
Taghbalout A, Rothfield L (2007) RNase E and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton. Proc Natl Acad Sci USA 104:1667-1672
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1667-1672
-
-
Taghbalout, A.1
Rothfield, L.2
-
221
-
-
46649086171
-
RNase e and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome
-
18337249
-
Taghbalout A, Rothfield L (2008) RNase E and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome. J Biol Chem 283:13850-13855
-
(2008)
J Biol Chem
, vol.283
, pp. 13850-13855
-
-
Taghbalout, A.1
Rothfield, L.2
-
222
-
-
79960083390
-
Processive movement of MreB-associated cell wall biosynthetic complexes in bacteria
-
21636744
-
Dominguez-Escobar J, Chastanet A, Crevenna AH, Fromion V, Wedlich-Soldner R, Carballido-Lopez R (2011) Processive movement of MreB-associated cell wall biosynthetic complexes in bacteria. Science 333:225-228
-
(2011)
Science
, vol.333
, pp. 225-228
-
-
Dominguez-Escobar, J.1
Chastanet, A.2
Crevenna, A.H.3
Fromion, V.4
Wedlich-Soldner, R.5
Carballido-Lopez, R.6
-
223
-
-
84871055385
-
The helical MreB cytoskeleton in Escherichia coli MC1000/pLE7 is an artifact of the N-Terminal yellow fluorescent protein tag
-
22904287
-
Swulius MT, Jensen GJ (2012) The helical MreB cytoskeleton in Escherichia coli MC1000/pLE7 is an artifact of the N-Terminal yellow fluorescent protein tag. J Bacteriol 194:6382-6386
-
(2012)
J Bacteriol
, vol.194
, pp. 6382-6386
-
-
Swulius, M.T.1
Jensen, G.J.2
-
224
-
-
84856653970
-
MreB: Pilot or passenger of cell wall synthesis?
-
22154164
-
White CL, Gober JW (2012) MreB: pilot or passenger of cell wall synthesis? Trends Microbiol 20:74-79
-
(2012)
Trends Microbiol
, vol.20
, pp. 74-79
-
-
White, C.L.1
Gober, J.W.2
-
225
-
-
84869486713
-
Identification of interaction partners of the dynamin-like protein DynA from Bacillus subtilis
-
23060960
-
Burmann F, Sawant P, Bramkamp M (2012) Identification of interaction partners of the dynamin-like protein DynA from Bacillus subtilis. Commun Integr Biol 5:362-369
-
(2012)
Commun Integr Biol
, vol.5
, pp. 362-369
-
-
Burmann, F.1
Sawant, P.2
Bramkamp, M.3
-
226
-
-
0034651795
-
Compartmentalization of transcription and translation in Bacillus subtilis
-
10675340
-
Lewis PJ, Thaker SD, Errington J (2000) Compartmentalization of transcription and translation in Bacillus subtilis. EMBO J 19:710-718
-
(2000)
EMBO J
, vol.19
, pp. 710-718
-
-
Lewis, P.J.1
Thaker, S.D.2
Errington, J.3
-
227
-
-
0034859439
-
Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription
-
11463749
-
Mascarenhas J, Weber MH, Graumann PL (2001) Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription. EMBO Rep 2:685-689
-
(2001)
EMBO Rep
, vol.2
, pp. 685-689
-
-
Mascarenhas, J.1
Weber, M.H.2
Graumann, P.L.3
-
228
-
-
84862765893
-
Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells
-
22624875
-
Bakshi S, Siryaporn A, Goulian M, Weisshaar JC (2012) Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells. Mol Microbiol 85:21-38
-
(2012)
Mol Microbiol
, vol.85
, pp. 21-38
-
-
Bakshi, S.1
Siryaporn, A.2
Goulian, M.3
Weisshaar, J.C.4
-
229
-
-
80052643394
-
Chromosome organization by a nucleoid-associated protein in live bacteria
-
21903814
-
Wang W, Li GW, Chen C, Xie XS, Zhuang X (2011) Chromosome organization by a nucleoid-associated protein in live bacteria. Science 333:1445-1449
-
(2011)
Science
, vol.333
, pp. 1445-1449
-
-
Wang, W.1
Li, G.W.2
Chen, C.3
Xie, X.S.4
Zhuang, X.5
-
231
-
-
77954242830
-
Spatial organization of the flow of genetic information in bacteria
-
20562858
-
Montero Llopis P, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, Emonet T, Jacobs-Wagner C (2010) Spatial organization of the flow of genetic information in bacteria. Nature 466:77-81
-
(2010)
Nature
, vol.466
, pp. 77-81
-
-
Montero Llopis, P.1
Jackson, A.F.2
Sliusarenko, O.3
Surovtsev, I.4
Heinritz, J.5
Emonet, T.6
Jacobs-Wagner, C.7
-
232
-
-
34047263288
-
Cold shock proteins aid coupling of transcription and translation in bacteria
-
17455763
-
El-Sharoud WM, Graumann PL (2007) Cold shock proteins aid coupling of transcription and translation in bacteria. Sci Prog 90:15-27
-
(2007)
Sci Prog
, vol.90
, pp. 15-27
-
-
El-Sharoud, W.M.1
Graumann, P.L.2
-
233
-
-
84874902273
-
Membrane association via an amino-terminal amphipathic helix is required for the cellular organization and function of RNase II
-
23344958
-
Lu F, Taghbalout A (2013) Membrane association via an amino-terminal amphipathic helix is required for the cellular organization and function of RNase II. J Biol Chem 288:7241-7251
-
(2013)
J Biol Chem
, vol.288
, pp. 7241-7251
-
-
Lu, F.1
Taghbalout, A.2
-
234
-
-
70349490822
-
Subcellular localization of a bacterial regulatory RNA
-
19805312
-
Russell JH, Keiler KC (2009) Subcellular localization of a bacterial regulatory RNA. Proc Natl Acad Sci USA 106:16405-16409
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 16405-16409
-
-
Russell, J.H.1
Keiler, K.C.2
-
235
-
-
18244374777
-
Activity of Lac repressor anchored to the Escherichia coli inner membrane
-
15867195
-
Gorke B, Reinhardt J, Rak B (2005) Activity of Lac repressor anchored to the Escherichia coli inner membrane. Nucleic Acids Res 33:2504-2511
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2504-2511
-
-
Gorke, B.1
Reinhardt, J.2
Rak, B.3
-
236
-
-
0035957515
-
Efficient transcriptional antitermination from the Escherichia coli cytoplasmic membrane
-
11327758
-
Gorke B, Rak B (2001) Efficient transcriptional antitermination from the Escherichia coli cytoplasmic membrane. J Mol Biol 308:131-145
-
(2001)
J Mol Biol
, vol.308
, pp. 131-145
-
-
Gorke, B.1
Rak, B.2
-
237
-
-
84877694848
-
Four-dimensional imaging of E coli nucleoid organization and dynamics in living cells
-
23623305
-
Fisher JK, Bourniquel A, Witz G, Weiner B, Prentiss M, Kleckner N (2013) Four-dimensional imaging of E. coli nucleoid organization and dynamics in living cells. Cell 153:882-895
-
(2013)
Cell
, vol.153
, pp. 882-895
-
-
Fisher, J.K.1
Bourniquel, A.2
Witz, G.3
Weiner, B.4
Prentiss, M.5
Kleckner, N.6
-
239
-
-
0026663105
-
Interdependence of translation, transcription and mRNA degradation in the lacZ gene
-
1507217
-
Yarchuk O, Jacques N, Guillerez J, Dreyfus M (1992) Interdependence of translation, transcription and mRNA degradation in the lacZ gene. J Mol Biol 226:581-596
-
(1992)
J Mol Biol
, vol.226
, pp. 581-596
-
-
Yarchuk, O.1
Jacques, N.2
Guillerez, J.3
Dreyfus, M.4
-
240
-
-
0029438136
-
Autoregulation of RNase e synthesis in Escherichia coli
-
8643409
-
Jain C, Belasco JG (1995) Autoregulation of RNase E synthesis in Escherichia coli. Nucleic Acids Symp Ser 33:85-88
-
(1995)
Nucleic Acids Symp ser
, vol.33
, pp. 85-88
-
-
Jain, C.1
Belasco, J.G.2
-
241
-
-
63049138147
-
Autogenous regulation of Escherichia coli polynucleotide phosphorylase expression revisited
-
19136586
-
Carzaniga T, Briani F, Zangrossi S, Merlino G, Marchi P, Deho G (2009) Autogenous regulation of Escherichia coli polynucleotide phosphorylase expression revisited. J Bacteriol 191:1738-1748
-
(2009)
J Bacteriol
, vol.191
, pp. 1738-1748
-
-
Carzaniga, T.1
Briani, F.2
Zangrossi, S.3
Merlino, G.4
Marchi, P.5
Deho, G.6
-
242
-
-
0035803559
-
PNPase autocontrols its expression by degrading a double-stranded structure in the pnp mRNA leader
-
11726520
-
Jarrige AC, Mathy N, Portier C (2001) PNPase autocontrols its expression by degrading a double-stranded structure in the pnp mRNA leader. EMBO J 20:6845-6855
-
(2001)
EMBO J
, vol.20
, pp. 6845-6855
-
-
Jarrige, A.C.1
Mathy, N.2
Portier, C.3
-
243
-
-
0029856238
-
RNase III autoregulation: Structure and function of rncO, the posttranscriptional "operator"
-
8972772
-
Matsunaga J, Simons EL, Simons RW (1996) RNase III autoregulation: structure and function of rncO, the posttranscriptional "operator". RNA 2:1228-1240
-
(1996)
RNA
, vol.2
, pp. 1228-1240
-
-
Matsunaga, J.1
Simons, E.L.2
Simons, R.W.3
-
244
-
-
75149138294
-
Regulation of morphological differentiation in S coelicolor by RNase III (AbsB) cleavage of mRNA encoding the AdpA transcription factor
-
20059679
-
Xu W, Huang J, Lin R, Shi J, Cohen SN (2010) Regulation of morphological differentiation in S. coelicolor by RNase III (AbsB) cleavage of mRNA encoding the AdpA transcription factor. Mol Microbiol 75:781-791
-
(2010)
Mol Microbiol
, vol.75
, pp. 781-791
-
-
Xu, W.1
Huang, J.2
Lin, R.3
Shi, J.4
Cohen, S.N.5
-
245
-
-
0043224223
-
RraA a protein inhibitor of RNase e activity that globally modulates RNA abundance in E coli
-
13678585
-
Lee K, Zhan X, Gao J, Qiu J, Feng Y, Meganathan R, Cohen SN, Georgiou G (2003) RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli. Cell 114:623-634
-
(2003)
Cell
, vol.114
, pp. 623-634
-
-
Lee, K.1
Zhan, X.2
Gao, J.3
Qiu, J.4
Feng, Y.5
Meganathan, R.6
Cohen, S.N.7
Georgiou, G.8
-
246
-
-
77149138644
-
The regulatory protein RraA modulates RNA-binding and helicase activities of the E coli RNA degradosome
-
20106955
-
Gorna MW, Pietras Z, Tsai YC, Callaghan AJ, Hernandez H, Robinson CV, Luisi BF (2010) The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome. RNA 16:553-562
-
(2010)
RNA
, vol.16
, pp. 553-562
-
-
Gorna, M.W.1
Pietras, Z.2
Tsai, Y.C.3
Callaghan, A.J.4
Hernandez, H.5
Robinson, C.V.6
Luisi, B.F.7
-
247
-
-
33646255214
-
Regulation of RraA, a protein inhibitor of RNase E-mediated RNA decay
-
16621818
-
Zhao M, Zhou L, Kawarasaki Y, Georgiou G (2006) Regulation of RraA, a protein inhibitor of RNase E-mediated RNA decay. J Bacteriol 188:3257-3263
-
(2006)
J Bacteriol
, vol.188
, pp. 3257-3263
-
-
Zhao, M.1
Zhou, L.2
Kawarasaki, Y.3
Georgiou, G.4
-
248
-
-
84874881006
-
Targeted decay of a regulatory small RNA by an adaptor protein for RNase e and counteraction by an anti-adaptor RNA
-
23475961
-
Gopel Y, Papenfort K, Reichenbach B, Vogel J, Gorke B (2013) Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA. Genes Dev 27:552-564
-
(2013)
Genes Dev
, vol.27
, pp. 552-564
-
-
Gopel, Y.1
Papenfort, K.2
Reichenbach, B.3
Vogel, J.4
Gorke, B.5
-
249
-
-
61749088917
-
Bacterial chromosome-encoded small regulatory RNAs
-
19207102
-
Brantl S (2009) Bacterial chromosome-encoded small regulatory RNAs. Future Microbiol 4:85-103
-
(2009)
Future Microbiol
, vol.4
, pp. 85-103
-
-
Brantl, S.1
-
250
-
-
84863924309
-
Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
-
doi: 10.1101/cshperspect.a003798
-
Gottesman S, Storz G (2011) Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol 3:12. doi: 10.1101/cshperspect.a003798
-
(2011)
Cold Spring Harb Perspect Biol
, vol.3
, Issue.12
-
-
Gottesman, S.1
Storz, G.2
-
251
-
-
77953753696
-
Small RNA-mediated regulation at the level of transcript stability
-
20220305
-
Caron MP, Lafontaine DA, Masse E (2010) Small RNA-mediated regulation at the level of transcript stability. RNA Biol 7:140-144
-
(2010)
RNA Biol
, vol.7
, pp. 140-144
-
-
Caron, M.P.1
Lafontaine, D.A.2
Masse, E.3
-
252
-
-
79960433506
-
Hfq and its constellation of RNA
-
21760622
-
Vogel J, Luisi BF (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9:578-589
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
253
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
12975324
-
Masse E, Escorcia FE, Gottesman S (2003) Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev 17:2374-2383
-
(2003)
Genes Dev
, vol.17
, pp. 2374-2383
-
-
Masse, E.1
Escorcia, F.E.2
Gottesman, S.3
-
254
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
19620966
-
Pfeiffer V, Papenfort K, Lucchini S, Hinton JC, Vogel J (2009) Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol 16:840-846
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.4
Vogel, J.5
-
255
-
-
79951700321
-
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage
-
21289064
-
Prevost K, Desnoyers G, Jacques JF, Lavoie F, Masse E (2011) Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage. Genes Dev 25:385-396
-
(2011)
Genes Dev
, vol.25
, pp. 385-396
-
-
Prevost, K.1
Desnoyers, G.2
Jacques, J.F.3
Lavoie, F.4
Masse, E.5
-
256
-
-
38049028411
-
Characterization of the role of ribonucleases in Salmonella small RNA decay
-
17982174
-
Viegas SC, Pfeiffer V, Sittka A, Silva IJ, Vogel J, Arraiano CM (2007) Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Res 35:7651-7664
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7651-7664
-
-
Viegas, S.C.1
Pfeiffer, V.2
Sittka, A.3
Silva, I.J.4
Vogel, J.5
Arraiano, C.M.6
-
257
-
-
84866788439
-
The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase e
-
22902561
-
Bandyra KJ, Said N, Pfeiffer V, Gorna MW, Vogel J, Luisi BF (2012) The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E. Mol Cell 47:943-953
-
(2012)
Mol Cell
, vol.47
, pp. 943-953
-
-
Bandyra, K.J.1
Said, N.2
Pfeiffer, V.3
Gorna, M.W.4
Vogel, J.5
Luisi, B.F.6
-
258
-
-
79954601376
-
Regulation of the small regulatory RNA MicA by ribonuclease III: A target-dependent pathway
-
21138960
-
Viegas SC, Silva IJ, Saramago M, Domingues S, Arraiano CM (2011) Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway. Nucleic Acids Res 39:2918-2930
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 2918-2930
-
-
Viegas, S.C.1
Silva, I.J.2
Saramago, M.3
Domingues, S.4
Arraiano, C.M.5
-
259
-
-
84858670765
-
The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq
-
22355164
-
Andrade JM, Pobre V, Matos AM, Arraiano CM (2012) The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq. RNA 18:844-855
-
(2012)
RNA
, vol.18
, pp. 844-855
-
-
Andrade, J.M.1
Pobre, V.2
Matos, A.M.3
Arraiano, C.M.4
-
260
-
-
0142030030
-
Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay
-
14617186
-
Mohanty BK, Kushner SR (2003) Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol Microbiol 50:645-658
-
(2003)
Mol Microbiol
, vol.50
, pp. 645-658
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
261
-
-
79956225645
-
Role of polynucleotide phosphorylase in sRNA function in Escherichia coli
-
21527671
-
De Lay N, Gottesman S (2011) Role of polynucleotide phosphorylase in sRNA function in Escherichia coli. RNA 17:1172-1189
-
(2011)
RNA
, vol.17
, pp. 1172-1189
-
-
De Lay, N.1
Gottesman, S.2
-
262
-
-
51249099359
-
Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome
-
18691600
-
Worrall JA, Gorna M, Crump NT, Phillips LG, Tuck AC, Price AJ, Bavro VN, Luisi BF (2008) Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome. J Mol Biol 382:870-883
-
(2008)
J Mol Biol
, vol.382
, pp. 870-883
-
-
Worrall, J.A.1
Gorna, M.2
Crump, N.T.3
Phillips, L.G.4
Tuck, A.C.5
Price, A.J.6
Bavro, V.N.7
Luisi, B.F.8
-
263
-
-
84871321022
-
RNase E: At the interface of bacterial RNA processing and decay
-
23241849
-
Mackie GA (2013) RNase E: at the interface of bacterial RNA processing and decay. Nat Rev Microbiol 11:45-57
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 45-57
-
-
Mackie, G.A.1
-
264
-
-
84869021523
-
Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli
-
22923520
-
Tsai YC, Du D, Dominguez-Malfavon L, Dimastrogiovanni D, Cross J, Callaghan AJ, Garcia-Mena J, Luisi BF (2012) Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli. Nucleic Acids Res 40:10417-10431
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 10417-10431
-
-
Tsai, Y.C.1
Du, D.2
Dominguez-Malfavon, L.3
Dimastrogiovanni, D.4
Cross, J.5
Callaghan, A.J.6
Garcia-Mena, J.7
Luisi, B.F.8
-
266
-
-
73849103559
-
An overview of RNAs with regulatory functions in Gram-positive bacteria
-
19859665
-
Romby P, Charpentier E (2010) An overview of RNAs with regulatory functions in Gram-positive bacteria. Cell Mol Life Sci: CMLS 67:217-237
-
(2010)
Cell Mol Life Sci: CMLS
, vol.67
, pp. 217-237
-
-
Romby, P.1
Charpentier, E.2
-
267
-
-
58549096736
-
Quorum sensing in staphylococci
-
18713030
-
Novick RP, Geisinger E (2008) Quorum sensing in staphylococci. Annu Rev Genet 42:541-564
-
(2008)
Annu Rev Genet
, vol.42
, pp. 541-564
-
-
Novick, R.P.1
Geisinger, E.2
-
268
-
-
34249881878
-
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism
-
17545468
-
Boisset S, Geissmann T, Huntzinger E, Fechter P, Bendridi N, Possedko M, Chevalier C, Helfer AC, Benito Y, Jacquier A, Gaspin C, Vandenesch F, Romby P (2007) Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev 21:1353-1366
-
(2007)
Genes Dev
, vol.21
, pp. 1353-1366
-
-
Boisset, S.1
Geissmann, T.2
Huntzinger, E.3
Fechter, P.4
Bendridi, N.5
Possedko, M.6
Chevalier, C.7
Helfer, A.C.8
Benito, Y.9
Jacquier, A.10
Gaspin, C.11
Vandenesch, F.12
Romby, P.13
-
269
-
-
20144380295
-
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression
-
15678100
-
Huntzinger E, Boisset S, Saveanu C, Benito Y, Geissmann T, Namane A, Lina G, Etienne J, Ehresmann B, Ehresmann C, Jacquier A, Vandenesch F, Romby P (2005) Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression. EMBO J 24:824-835
-
(2005)
EMBO J
, vol.24
, pp. 824-835
-
-
Huntzinger, E.1
Boisset, S.2
Saveanu, C.3
Benito, Y.4
Geissmann, T.5
Namane, A.6
Lina, G.7
Etienne, J.8
Ehresmann, B.9
Ehresmann, C.10
Jacquier, A.11
Vandenesch, F.12
Romby, P.13
-
271
-
-
79955156794
-
A small RNA controls expression of the chitinase ChiA in Listeria monocytogenes
-
21533114
-
Nielsen JS, Larsen MH, Lillebaek EM, Bergholz TM, Christiansen MH, Boor KJ, Wiedmann M, Kallipolitis BH (2011) A small RNA controls expression of the chitinase ChiA in Listeria monocytogenes. PLoS One 6:e19019
-
(2011)
PLoS One
, vol.6
, pp. 19019
-
-
Nielsen, J.S.1
Larsen, M.H.2
Lillebaek, E.M.3
Bergholz, T.M.4
Christiansen, M.H.5
Boor, K.J.6
Wiedmann, M.7
Kallipolitis, B.H.8
-
272
-
-
77950356238
-
Defining a role for Hfq in Gram-positive bacteria: Evidence for Hfq-dependent antisense regulation in Listeria monocytogenes
-
19942685
-
Nielsen JS, Lei LK, Ebersbach T, Olsen AS, Klitgaard JK, Valentin-Hansen P, Kallipolitis BH (2010) Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes. Nucleic Acids Res 38:907-919
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 907-919
-
-
Nielsen, J.S.1
Lei, L.K.2
Ebersbach, T.3
Olsen, A.S.4
Klitgaard, J.K.5
Valentin-Hansen, P.6
Kallipolitis, B.H.7
-
273
-
-
33749165741
-
The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism
-
17020585
-
Heidrich N, Chinali A, Gerth U, Brantl S (2006) The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism. Mol Microbiol 62:520-536
-
(2006)
Mol Microbiol
, vol.62
, pp. 520-536
-
-
Heidrich, N.1
Chinali, A.2
Gerth, U.3
Brantl, S.4
-
274
-
-
77952157242
-
A dual-function sRNA from B subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon
-
20444087
-
Gimpel M, Heidrich N, Mader U, Krugel H, Brantl S (2010) A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon. Mol Microbiol 76:990-1009
-
(2010)
Mol Microbiol
, vol.76
, pp. 990-1009
-
-
Gimpel, M.1
Heidrich, N.2
Mader, U.3
Krugel, H.4
Brantl, S.5
-
275
-
-
2242454128
-
Dehydrogenases from all three domains of life cleave RNA
-
12359717
-
Evguenieva-Hackenberg E, Schiltz E, Klug G (2002) Dehydrogenases from all three domains of life cleave RNA. J Biol Chem 277:46145-46150
-
(2002)
J Biol Chem
, vol.277
, pp. 46145-46150
-
-
Evguenieva-Hackenberg, E.1
Schiltz, E.2
Klug, G.3
-
276
-
-
84871240106
-
SR1-a small RNA with two remarkably conserved functions
-
23034808
-
Gimpel M, Preis H, Barth E, Gramzow L, Brantl S (2012) SR1-a small RNA with two remarkably conserved functions. Nucleic Acids Res 40:11659-11672
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11659-11672
-
-
Gimpel, M.1
Preis, H.2
Barth, E.3
Gramzow, L.4
Brantl, S.5
-
277
-
-
80052973462
-
Prospects for riboswitch discovery and analysis
-
21925376
-
Breaker RR (2011) Prospects for riboswitch discovery and analysis. Mol Cell 43:867-879
-
(2011)
Mol Cell
, vol.43
, pp. 867-879
-
-
Breaker, R.R.1
-
278
-
-
84872543206
-
A decade of riboswitches
-
23332744
-
Serganov A, Nudler E (2013) A decade of riboswitches. Cell 152:17-24
-
(2013)
Cell
, vol.152
, pp. 17-24
-
-
Serganov, A.1
Nudler, E.2
-
279
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
15029187
-
Winkler WC, Nahvi A, Roth A, Collins JA, Breaker RR (2004) Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428:281-286
-
(2004)
Nature
, vol.428
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
280
-
-
79952362042
-
The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo
-
21317896
-
Watson PY, Fedor MJ (2011) The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo. Nat Struct Mol Biol 18:359-363
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 359-363
-
-
Watson, P.Y.1
Fedor, M.J.2
-
281
-
-
84870954236
-
Dual-acting riboswitch control of translation initiation and mRNA decay
-
23169642
-
Caron MP, Bastet L, Lussier A, Simoneau-Roy M, Masse E, Lafontaine DA (2012) Dual-acting riboswitch control of translation initiation and mRNA decay. Proc Natl Acad Sci USA 109:E3444-E3453
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Caron, M.P.1
Bastet, L.2
Lussier, A.3
Simoneau-Roy, M.4
Masse, E.5
Lafontaine, D.A.6
-
282
-
-
80755144025
-
Toxin-antitoxin systems in bacteria and archaea
-
22060041
-
Yamaguchi Y, Park JH, Inouye M (2011) Toxin-antitoxin systems in bacteria and archaea. Annu Rev Genet 45:61-79
-
(2011)
Annu Rev Genet
, vol.45
, pp. 61-79
-
-
Yamaguchi, Y.1
Park, J.H.2
Inouye, M.3
-
284
-
-
64049098151
-
MRNA interferases, sequence-specific endoribonucleases from the toxin-antitoxin systems
-
19215780
-
Yamaguchi Y, Inouye M (2009) mRNA interferases, sequence-specific endoribonucleases from the toxin-antitoxin systems. Prog Mol Biol Transl Sci 85:467-500
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 467-500
-
-
Yamaguchi, Y.1
Inouye, M.2
-
285
-
-
84877836829
-
Ribonucleases in bacterial toxin-antitoxin systems
-
23454553
-
Cook GM, Robson JR, Frampton RA, McKenzie J, Przybilski R, Fineran PC, Arcus VL (2013) Ribonucleases in bacterial toxin-antitoxin systems. Biochim Biophys Acta 1829:523-531
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 523-531
-
-
Cook, G.M.1
Robson, J.R.2
Frampton, R.A.3
McKenzie, J.4
Przybilski, R.5
Fineran, P.C.6
Arcus, V.L.7
-
286
-
-
57349189421
-
Small toxic proteins and the antisense RNAs that repress them
-
19052321
-
Fozo EM, Hemm MR, Storz G (2008) Small toxic proteins and the antisense RNAs that repress them. Microbiol Mol Biol Rev: MMBR 72:579-589
-
(2008)
Microbiol Mol Biol Rev: MMBR
, vol.72
, pp. 579-589
-
-
Fozo, E.M.1
Hemm, M.R.2
Storz, G.3
-
287
-
-
84875147355
-
Bacterial type i toxin-antitoxin systems
-
23324552
-
Brantl S (2012) Bacterial type I toxin-antitoxin systems. RNA Biol 9:1488-1490
-
(2012)
RNA Biol
, vol.9
, pp. 1488-1490
-
-
Brantl, S.1
-
289
-
-
0035807805
-
RelE, a global inhibitor of translation, is activated during nutritional stress
-
11717402
-
Christensen SK, Mikkelsen M, Pedersen K, Gerdes K (2001) RelE, a global inhibitor of translation, is activated during nutritional stress. Proc Natl Acad Sci USA 98:14328-14333
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 14328-14333
-
-
Christensen, S.K.1
Mikkelsen, M.2
Pedersen, K.3
Gerdes, K.4
-
290
-
-
0242361562
-
Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control
-
14580341
-
Hayes CS, Sauer RT (2003) Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control. Mol Cell 12:903-911
-
(2003)
Mol Cell
, vol.12
, pp. 903-911
-
-
Hayes, C.S.1
Sauer, R.T.2
-
291
-
-
0037428226
-
The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
-
12526800
-
Pedersen K, Zavialov AV, Pavlov MY, Elf J, Gerdes K, Ehrenberg M (2003) The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 112:131-140
-
(2003)
Cell
, vol.112
, pp. 131-140
-
-
Pedersen, K.1
Zavialov, A.V.2
Pavlov, M.Y.3
Elf, J.4
Gerdes, K.5
Ehrenberg, M.6
-
292
-
-
71149087505
-
The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE
-
20005802
-
Neubauer C, Gao YG, Andersen KR, Dunham CM, Kelley AC, Hentschel J, Gerdes K, Ramakrishnan V, Brodersen DE (2009) The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell 139:1084-1095
-
(2009)
Cell
, vol.139
, pp. 1084-1095
-
-
Neubauer, C.1
Gao, Y.G.2
Andersen, K.R.3
Dunham, C.M.4
Kelley, A.C.5
Hentschel, J.6
Gerdes, K.7
Ramakrishnan, V.8
Brodersen, D.E.9
-
293
-
-
84877988932
-
Relaxed cleavage specificity within the RelE toxin family
-
23543711
-
Goeders N, Dreze PL, Van Melderen L (2013) Relaxed cleavage specificity within the RelE toxin family. J Bacteriol 195:2541-2549
-
(2013)
J Bacteriol
, vol.195
, pp. 2541-2549
-
-
Goeders, N.1
Dreze, P.L.2
Van Melderen, L.3
-
294
-
-
42549122192
-
The extracellular death factor: Physiological and genetic factors influencing its production and response in Escherichia coli
-
18310334
-
Kolodkin-Gal I, Engelberg-Kulka H (2008) The extracellular death factor: physiological and genetic factors influencing its production and response in Escherichia coli. J Bacteriol 190:3169-3175
-
(2008)
J Bacteriol
, vol.190
, pp. 3169-3175
-
-
Kolodkin-Gal, I.1
Engelberg-Kulka, H.2
-
295
-
-
35548944074
-
A linear pentapeptide is a quorum-sensing factor required for mazEF-mediated cell death in Escherichia coli
-
17962566
-
Kolodkin-Gal I, Hazan R, Gaathon A, Carmeli S, Engelberg-Kulka H (2007) A linear pentapeptide is a quorum-sensing factor required for mazEF-mediated cell death in Escherichia coli. Science 318:652-655
-
(2007)
Science
, vol.318
, pp. 652-655
-
-
Kolodkin-Gal, I.1
Hazan, R.2
Gaathon, A.3
Carmeli, S.4
Engelberg-Kulka, H.5
-
296
-
-
13544254264
-
Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase
-
15537630
-
Zhang Y, Zhang J, Hara H, Kato I, Inouye M (2005) Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase. J Biol Chem 280:3143-3150
-
(2005)
J Biol Chem
, vol.280
, pp. 3143-3150
-
-
Zhang, Y.1
Zhang, J.2
Hara, H.3
Kato, I.4
Inouye, M.5
-
297
-
-
0242361323
-
MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli
-
14580342
-
Zhang Y, Zhang J, Hoeflich KP, Ikura M, Qing G, Inouye M (2003) MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli. Mol Cell 12:913-923
-
(2003)
Mol Cell
, vol.12
, pp. 913-923
-
-
Zhang, Y.1
Zhang, J.2
Hoeflich, K.P.3
Ikura, M.4
Qing, G.5
Inouye, M.6
-
298
-
-
84864152690
-
Use of E coli for the production of a single protein
-
22735953
-
Mao L, Inouye M (2012) Use of E. coli for the production of a single protein. Methods Mol Biol 899:177-185
-
(2012)
Methods Mol Biol
, vol.899
, pp. 177-185
-
-
Mao, L.1
Inouye, M.2
-
299
-
-
84863064573
-
Inhibition of specific gene expressions by protein-mediated mRNA interference
-
22215082
-
Yamaguchi Y, Nariya H, Park JH, Inouye M (2012) Inhibition of specific gene expressions by protein-mediated mRNA interference. Nat Commun 3:607
-
(2012)
Nat Commun
, vol.3
, pp. 607
-
-
Yamaguchi, Y.1
Nariya, H.2
Park, J.H.3
Inouye, M.4
-
300
-
-
79960918235
-
Bacillus subtilis MazF-bs (EndoA) is a UACAU-specific mRNA interferase
-
21763692
-
Park JH, Yamaguchi Y, Inouye M (2011) Bacillus subtilis MazF-bs (EndoA) is a UACAU-specific mRNA interferase. FEBS Lett 585:2526-2532
-
(2011)
FEBS Lett
, vol.585
, pp. 2526-2532
-
-
Park, J.H.1
Yamaguchi, Y.2
Inouye, M.3
-
301
-
-
80053563668
-
Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli
-
21944167
-
Vesper O, Amitai S, Belitsky M, Byrgazov K, Kaberdina AC, Engelberg-Kulka H, Moll I (2011) Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli. Cell 147:147-157
-
(2011)
Cell
, vol.147
, pp. 147-157
-
-
Vesper, O.1
Amitai, S.2
Belitsky, M.3
Byrgazov, K.4
Kaberdina, A.C.5
Engelberg-Kulka, H.6
Moll, I.7
-
303
-
-
0034649546
-
PIN domains in nonsense-mediated mRNA decay and RNAi
-
11137022
-
Clissold PM, Ponting CP (2000) PIN domains in nonsense-mediated mRNA decay and RNAi. Curr Biol 10:R888-R890
-
(2000)
Curr Biol
, vol.10
-
-
Clissold, P.M.1
Ponting, C.P.2
-
304
-
-
79956328889
-
Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA
-
21502523
-
Winther KS, Gerdes K (2011) Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA. Proc Natl Acad Sci USA 108:7403-7407
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7403-7407
-
-
Winther, K.S.1
Gerdes, K.2
-
305
-
-
84861397933
-
Determination of ribonuclease sequence-specificity using Pentaprobes and mass spectrometry
-
22539524
-
McKenzie JL, Duyvestyn JM, Smith T, Bendak K, Mackay J, Cursons R, Cook GM, Arcus VL (2012) Determination of ribonuclease sequence-specificity using Pentaprobes and mass spectrometry. RNA 18:1267-1278
-
(2012)
RNA
, vol.18
, pp. 1267-1278
-
-
McKenzie, J.L.1
Duyvestyn, J.M.2
Smith, T.3
Bendak, K.4
Mackay, J.5
Cursons, R.6
Cook, G.M.7
Arcus, V.L.8
-
306
-
-
84861210848
-
A VapBC toxin-antitoxin module is a posttranscriptional regulator of metabolic flux in mycobacteria
-
22366418
-
McKenzie JL, Robson J, Berney M, Smith TC, Ruthe A, Gardner PP, Arcus VL, Cook GM (2012) A VapBC toxin-antitoxin module is a posttranscriptional regulator of metabolic flux in mycobacteria. J Bacteriol 194:2189-2204
-
(2012)
J Bacteriol
, vol.194
, pp. 2189-2204
-
-
McKenzie, J.L.1
Robson, J.2
Berney, M.3
Smith, T.C.4
Ruthe, A.5
Gardner, P.P.6
Arcus, V.L.7
Cook, G.M.8
-
307
-
-
58849150431
-
The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair
-
19124776
-
Fineran PC, Blower TR, Foulds IJ, Humphreys DP, Lilley KS, Salmond GP (2009) The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair. Proc Natl Acad Sci USA 106:894-899
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 894-899
-
-
Fineran, P.C.1
Blower, T.R.2
Foulds, I.J.3
Humphreys, D.P.4
Lilley, K.S.5
Salmond, G.P.6
-
308
-
-
79551624663
-
A processed noncoding RNA regulates an altruistic bacterial antiviral system
-
21240270
-
Blower TR, Pei XY, Short FL, Fineran PC, Humphreys DP, Luisi BF, Salmond GP (2011) A processed noncoding RNA regulates an altruistic bacterial antiviral system. Nat Struct Mol Biol 18:185-190
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 185-190
-
-
Blower, T.R.1
Pei, X.Y.2
Short, F.L.3
Fineran, P.C.4
Humphreys, D.P.5
Luisi, B.F.6
Salmond, G.P.7
-
309
-
-
84872541994
-
Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot
-
23267117
-
Short FL, Pei XY, Blower TR, Ong SL, Fineran PC, Luisi BF, Salmond GP (2013) Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot. Proc Natl Acad Sci USA 110:E241-E249
-
(2013)
Proc Natl Acad Sci USA
, vol.110
-
-
Short, F.L.1
Pei, X.Y.2
Blower, T.R.3
Ong, S.L.4
Fineran, P.C.5
Luisi, B.F.6
Salmond, G.P.7
-
310
-
-
84878936806
-
CRISPR-mediated adaptive immune systems in bacteria and archaea
-
23495939
-
Sorek R, Lawrence CM, Wiedenheft B (2013) CRISPR-mediated adaptive immune systems in bacteria and archaea. Annu Rev Biochem 82:237-266
-
(2013)
Annu Rev Biochem
, vol.82
, pp. 237-266
-
-
Sorek, R.1
Lawrence, C.M.2
Wiedenheft, B.3
-
311
-
-
84870279994
-
A new type v toxin-antitoxin system where mRNA for toxin GhoT is cleaved by antitoxin GhoS
-
22941047
-
Wang X, Lord DM, Cheng HY, Osbourne DO, Hong SH, Sanchez-Torres V, Quiroga C, Zheng K, Herrmann T, Peti W, Benedik MJ, Page R, Wood TK (2012) A new type V toxin-antitoxin system where mRNA for toxin GhoT is cleaved by antitoxin GhoS. Nat Chem Biol 8:855-861
-
(2012)
Nat Chem Biol
, vol.8
, pp. 855-861
-
-
Wang, X.1
Lord, D.M.2
Cheng, H.Y.3
Osbourne, D.O.4
Hong, S.H.5
Sanchez-Torres, V.6
Quiroga, C.7
Zheng, K.8
Herrmann, T.9
Peti, W.10
Benedik, M.J.11
Page, R.12
Wood, T.K.13
-
312
-
-
84878629593
-
Type II toxin/antitoxin MqsR/MqsA controls type v toxin/antitoxin GhoT/GhoS
-
23289863
-
Wang X, Lord DM, Hong SH, Peti W, Benedik MJ, Page R, Wood TK (2013) Type II toxin/antitoxin MqsR/MqsA controls type V toxin/antitoxin GhoT/GhoS. Environ Microbiol 15:1734-1744
-
(2013)
Environ Microbiol
, vol.15
, pp. 1734-1744
-
-
Wang, X.1
Lord, D.M.2
Hong, S.H.3
Peti, W.4
Benedik, M.J.5
Page, R.6
Wood, T.K.7
-
313
-
-
0026334860
-
Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis
-
1707536
-
Deutscher MP, Reuven NB (1991) Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 88:3277-3280
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 3277-3280
-
-
Deutscher, M.P.1
Reuven, N.B.2
-
314
-
-
0015505464
-
Incorporation of water oxygens into intracellular nucleotides and RNA. I. Predominantly non-hydrolytic RNA turnover in Bacillus subtilis
-
4336697
-
Duffy JJ, Chaney SG, Boyer PD (1972) Incorporation of water oxygens into intracellular nucleotides and RNA. I. Predominantly non-hydrolytic RNA turnover in Bacillus subtilis. J Mol Biol 64:565-579
-
(1972)
J Mol Biol
, vol.64
, pp. 565-579
-
-
Duffy, J.J.1
Chaney, S.G.2
Boyer, P.D.3
-
315
-
-
16844379766
-
Participation of 3?-to-5?exoribonucleases in the turnover of Bacillus subtilis mRNA
-
15805522
-
Oussenko IA, Abe T, Ujiie H, Muto A, Bechhofer DH (2005) Participation of 3?-to-5?exoribonucleases in the turnover of Bacillus subtilis mRNA. J Bacteriol 187:2758-2767
-
(2005)
J Bacteriol
, vol.187
, pp. 2758-2767
-
-
Oussenko, I.A.1
Abe, T.2
Ujiie, H.3
Muto, A.4
Bechhofer, D.H.5
-
316
-
-
84877826524
-
Emergence of the beta-CASP ribonucleases: Highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation
-
23403287
-
Dominski Z, Carpousis AJ, Clouet-d'Orval B (2013) Emergence of the beta-CASP ribonucleases: highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation. Biochim Biophys Acta 1829:532-551
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 532-551
-
-
Dominski, Z.1
Carpousis, A.J.2
Clouet-D'Orval, B.3
-
317
-
-
34247165419
-
Ribosomal protein L20 controls expression of the Bacillus subtilis infC operon via a transcription attenuation mechanism
-
17289755
-
Choonee N, Even S, Zig L, Putzer H (2007) Ribosomal protein L20 controls expression of the Bacillus subtilis infC operon via a transcription attenuation mechanism. Nucleic Acids Res 35:1578-1588
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1578-1588
-
-
Choonee, N.1
Even, S.2
Zig, L.3
Putzer, H.4
-
318
-
-
80053416799
-
5?end-independent RNase J1 endonuclease cleavage of Bacillus subtilis model RNA
-
21862575
-
Deikus G, Bechhofer DH (2011) 5?end-independent RNase J1 endonuclease cleavage of Bacillus subtilis model RNA. J Biol Chem 286:34932-34940
-
(2011)
J Biol Chem
, vol.286
, pp. 34932-34940
-
-
Deikus, G.1
Bechhofer, D.H.2
|