-
1
-
-
77955149193
-
The critical role of RNA processing and degradation in the control of gene expression
-
Arraiano CM, Andrade JM, Domingues S, Guinote IB, Malecki M, Matos RG, Moreira RN, Pobre V, Reis FP, Saramago M, Silva IJ, Viegas SC. 2010. The critical role of RNA processing and degradation in the control of gene expression. FEMS Microbiol. Rev. 34(5):883-923.
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, Issue.5
, pp. 883-923
-
-
Arraiano, C.M.1
Andrade, J.M.2
Domingues, S.3
Guinote, I.B.4
Malecki, M.5
Matos, R.G.6
Moreira, R.N.7
Pobre, V.8
Reis, F.P.9
Saramago, M.10
Silva, I.J.11
Viegas, S.C.12
-
2
-
-
33947368999
-
Colicin biology
-
Cascales E, Buchanan SK, Duche D, Kleanthous C, Lloubes R, Postle K, Riley M, Slatin S, Cavard D. 2007. Colicin biology. Microbiol. Mol. Biol. Rev. 71(1):158-229.
-
(2007)
Microbiol. Mol. Biol. Rev.
, vol.71
, Issue.1
, pp. 158-229
-
-
Cascales, E.1
Buchanan, S.K.2
Duche, D.3
Kleanthous, C.4
Lloubes, R.5
Postle, K.6
Riley, M.7
Slatin, S.8
Cavard, D.9
-
3
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
Horvath P, Barrangou R. 2010. CRISPR/Cas, the immune system of bacteria and archaea. Science 327(5962):167-170.
-
(2010)
Science
, vol.327
, Issue.5962
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
4
-
-
80053474881
-
Toxins-antitoxins: diversity, evolution and function
-
Hayes F, Van Melderen L. 2011. Toxins-antitoxins: diversity, evolution and function. Crit. Rev. Biochem. Mol. Biol. 46(5):386-408.
-
(2011)
Crit. Rev. Biochem. Mol. Biol.
, vol.46
, Issue.5
, pp. 386-408
-
-
Hayes, F.1
Van Melderen, L.2
-
5
-
-
80052196405
-
Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families
-
Leplae R, Geeraerts D, Hallez R, Guglielmini J, Dreze P, Van Melderen L. 2011. Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families. Nucleic Acids Res. 39(13):5513-5525.
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.13
, pp. 5513-5525
-
-
Leplae, R.1
Geeraerts, D.2
Hallez, R.3
Guglielmini, J.4
Dreze, P.5
Van Melderen, L.6
-
6
-
-
77951555583
-
New toxins homologous to ParE belonging to three-component toxin-antitoxin systems in Escherichia coli O157:H7
-
Hallez R, Geeraerts D, Sterckx Y, Mine N, Loris R, Van Melderen L. 2010. New toxins homologous to ParE belonging to three-component toxin-antitoxin systems in Escherichia coli O157:H7. Mol. Microbiol. 76(3):719-732.
-
(2010)
Mol. Microbiol.
, vol.76
, Issue.3
, pp. 719-732
-
-
Hallez, R.1
Geeraerts, D.2
Sterckx, Y.3
Mine, N.4
Loris, R.5
Van Melderen, L.6
-
7
-
-
0035807805
-
RelE, a global inhibitor of translation, is activated during nutritional stress
-
Christensen SK, Mikkelsen M, Pedersen K, Gerdes K. 2001. RelE, a global inhibitor of translation, is activated during nutritional stress. Proc. Natl. Acad. Sci. U. S. A. 98(25):14328-14333.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, Issue.25
, pp. 14328-14333
-
-
Christensen, S.K.1
Mikkelsen, M.2
Pedersen, K.3
Gerdes, K.4
-
8
-
-
60849121408
-
HicA of Escherichia coli defines a novel family of translation-independent mRNA interferases in bacteria and archaea
-
Jorgensen MG, Pandey DP, Jaskolska M, Gerdes K. 2009. HicA of Escherichia coli defines a novel family of translation-independent mRNA interferases in bacteria and archaea. J. Bacteriol. 191(4):1191-1199.
-
(2009)
J. Bacteriol.
, vol.191
, Issue.4
, pp. 1191-1199
-
-
Jorgensen, M.G.1
Pandey, D.P.2
Jaskolska, M.3
Gerdes, K.4
-
9
-
-
33749178742
-
Two higBA loci in the Vibrio cholerae superintegron encode mRNA cleaving enzymes and can stabilize plasmids
-
Christensen-Dalsgaard M, Gerdes K. 2006. Two higBA loci in the Vibrio cholerae superintegron encode mRNA cleaving enzymes and can stabilize plasmids. Mol. Microbiol. 62(2):397-411.
-
(2006)
Mol. Microbiol.
, vol.62
, Issue.2
, pp. 397-411
-
-
Christensen-Dalsgaard, M.1
Gerdes, K.2
-
10
-
-
74349123303
-
Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses
-
Christensen-Dalsgaard M, Jorgensen MG, Gerdes K. 2010. Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses. Mol. Microbiol. 75(2):333-348.
-
(2010)
Mol. Microbiol.
, vol.75
, Issue.2
, pp. 333-348
-
-
Christensen-Dalsgaard, M.1
Jorgensen, M.G.2
Gerdes, K.3
-
11
-
-
70350029580
-
Characterization of YafO, an Escherichia coli toxin
-
Zhang Y, Yamaguchi Y, Inouye M. 2009. Characterization of YafO, an Escherichia coli toxin. J. Biol. Chem. 284(38):25522-25531.
-
(2009)
J. Biol. Chem.
, vol.284
, Issue.38
, pp. 25522-25531
-
-
Zhang, Y.1
Yamaguchi, Y.2
Inouye, M.3
-
12
-
-
13544254264
-
Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase
-
Zhang Y, Zhang J, Hara H, Kato I, Inouye M. 2005. Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase. J. Biol. Chem. 280(5):3143-3150.
-
(2005)
J. Biol. Chem.
, vol.280
, Issue.5
, pp. 3143-3150
-
-
Zhang, Y.1
Zhang, J.2
Hara, H.3
Kato, I.4
Inouye, M.5
-
13
-
-
0242361323
-
MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli
-
Zhang Y, Zhang J, Hoeflich KP, Ikura M, Qing G, Inouye M. 2003. MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli. Mol. Cell 12(4):913-923.
-
(2003)
Mol. Cell
, vol.12
, Issue.4
, pp. 913-923
-
-
Zhang, Y.1
Zhang, J.2
Hoeflich, K.P.3
Ikura, M.4
Qing, G.5
Inouye, M.6
-
14
-
-
0037338682
-
Axe-Txe, a broad-spectrum proteic toxinantitoxin system specified by a multidrug-resistant, clinical isolate of Enterococcus faecium
-
Grady R, Hayes F. 2003. Axe-Txe, a broad-spectrum proteic toxinantitoxin system specified by a multidrug-resistant, clinical isolate of Enterococcus faecium. Mol. Microbiol. 47(5):1419-1432.
-
(2003)
Mol. Microbiol.
, vol.47
, Issue.5
, pp. 1419-1432
-
-
Grady, R.1
Hayes, F.2
-
15
-
-
0037428226
-
The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
-
Pedersen K, Zavialov AV, Pavlov MY, Elf J, Gerdes K, Ehrenberg M. 2003. The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 112(1):131-140.
-
(2003)
Cell
, vol.112
, Issue.1
, pp. 131-140
-
-
Pedersen, K.1
Zavialov, A.V.2
Pavlov, M.Y.3
Elf, J.4
Gerdes, K.5
Ehrenberg, M.6
-
16
-
-
71149087505
-
The structural basis for mRNA recognition and cleavage by the ribosomedependent endonuclease RelE
-
Neubauer C, Gao YG, Andersen KR, Dunham CM, Kelley AC, Hentschel J, Gerdes K, Ramakrishnan V, Brodersen DE. 2009. The structural basis for mRNA recognition and cleavage by the ribosomedependent endonuclease RelE. Cell 139(6):1084-1095.
-
(2009)
Cell
, vol.139
, Issue.6
, pp. 1084-1095
-
-
Neubauer, C.1
Gao, Y.G.2
Andersen, K.R.3
Dunham, C.M.4
Kelley, A.C.5
Hentschel, J.6
Gerdes, K.7
Ramakrishnan, V.8
Brodersen, D.E.9
-
17
-
-
79955394875
-
Bacterial toxin RelE mediates frequent codon-independent mRNA cleavage from the 5' end of coding regions in vivo
-
Hurley JM, Cruz JW, Ouyang M, Woychik NA. 2011. Bacterial toxin RelE mediates frequent codon-independent mRNA cleavage from the 5' end of coding regions in vivo. J. Biol. Chem. 286(17):14770-14778.
-
(2011)
J. Biol. Chem.
, vol.286
, Issue.17
, pp. 14770-14778
-
-
Hurley, J.M.1
Cruz, J.W.2
Ouyang, M.3
Woychik, N.A.4
-
18
-
-
67649794729
-
Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site
-
Li GY, Zhang Y, Inouye M, Ikura M. 2009. Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site. J. Biol. Chem. 284(21): 14628-14636.
-
(2009)
J. Biol. Chem.
, vol.284
, Issue.21
, pp. 14628-14636
-
-
Li, G.Y.1
Zhang, Y.2
Inouye, M.3
Ikura, M.4
-
19
-
-
84867404222
-
The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity
-
Boggild A, Sofos N, Andersen KR, Feddersen A, Easter AD, Passmore LA, Brodersen DE. 2012. The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity. Structure 20(10):1641-1648.
-
(2012)
Structure
, vol.20
, Issue.10
, pp. 1641-1648
-
-
Boggild, A.1
Sofos, N.2
Andersen, K.R.3
Feddersen, A.4
Easter, A.D.5
Passmore, L.A.6
Brodersen, D.E.7
-
20
-
-
1542472730
-
New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsensemediated RNA decay system
-
Anantharaman V, Aravind L. 2003. New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsensemediated RNA decay system. Genome Biol. 4(12):R81.
-
(2003)
Genome Biol.
, vol.4
, Issue.12
-
-
Anantharaman, V.1
Aravind, L.2
-
21
-
-
84869498037
-
Bacterial toxin-antitoxin systems: translation inhibitors everywhere
-
Guglielmini J, Van Melderen L. 2011. Bacterial toxin-antitoxin systems: translation inhibitors everywhere. Mob. Genet. Elements 1(4):283-290.
-
(2011)
Mob. Genet. Elements
, vol.1
, Issue.4
, pp. 283-290
-
-
Guglielmini, J.1
Van Melderen, L.2
-
22
-
-
0036098378
-
ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase
-
Jiang Y, Pogliano J, Helinski DR, Konieczny I. 2002. ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase. Mol. Microbiol. 44(4):971-979.
-
(2002)
Mol. Microbiol.
, vol.44
, Issue.4
, pp. 971-979
-
-
Jiang, Y.1
Pogliano, J.2
Helinski, D.R.3
Konieczny, I.4
-
23
-
-
65449116514
-
The inhibitory mechanism of protein synthesis by YoeB, an Escherichia coli toxin
-
Zhang Y, Inouye M. 2009. The inhibitory mechanism of protein synthesis by YoeB, an Escherichia coli toxin. J. Biol. Chem. 284(11):6627-6638.
-
(2009)
J. Biol. Chem.
, vol.284
, Issue.11
, pp. 6627-6638
-
-
Zhang, Y.1
Inouye, M.2
-
24
-
-
70350399514
-
MqsR, a crucial regulator for quorum sensing and biofilm formation, is a GCU-specific mRNA interferase in Escherichia coli
-
Yamaguchi Y, Park JH, Inouye M. 2009. MqsR, a crucial regulator for quorum sensing and biofilm formation, is a GCU-specific mRNA interferase in Escherichia coli. J. Biol. Chem. 284(42):28746-28753.
-
(2009)
J. Biol. Chem.
, vol.284
, Issue.42
, pp. 28746-28753
-
-
Yamaguchi, Y.1
Park, J.H.2
Inouye, M.3
-
25
-
-
60649093164
-
Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage
-
Prysak MH, Mozdzierz CJ, Cook AM, Zhu L, Zhang Y, Inouye M, Woychik NA. 2009. Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage. Mol. Microbiol. 71(5):1071-1087.
-
(2009)
Mol. Microbiol.
, vol.71
, Issue.5
, pp. 1071-1087
-
-
Prysak, M.H.1
Mozdzierz, C.J.2
Cook, A.M.3
Zhu, L.4
Zhang, Y.5
Inouye, M.6
Woychik, N.A.7
-
26
-
-
23744463273
-
Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin
-
Kamada K, Hanaoka F. 2005. Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin. Mol. Cell 19(4):497-509.
-
(2005)
Mol. Cell
, vol.19
, Issue.4
, pp. 497-509
-
-
Kamada, K.1
Hanaoka, F.2
-
27
-
-
84859487051
-
Molecular structure and function of the novel BrnT/BrnA toxin-antitoxin system of Brucella abortus
-
Heaton BE, Herrou J, Blackwell AE, Wysocki VH, Crosson S. 2012. Molecular structure and function of the novel BrnT/BrnA toxin-antitoxin system of Brucella abortus. J. Biol. Chem. 287(15):12098-12110.
-
(2012)
J. Biol. Chem.
, vol.287
, Issue.15
, pp. 12098-12110
-
-
Heaton, B.E.1
Herrou, J.2
Blackwell, A.E.3
Wysocki, V.H.4
Crosson, S.5
-
28
-
-
79953006377
-
Functional identification of toxinantitoxin molecules from Helicobacter pylori 26695 and structural elucidation of the molecular interactions
-
Han KD, Matsuura A, Ahn HC, Kwon AR, Min YH, Park HJ, Won HS, Park SJ, Kim DY, Lee BJ. 2011. Functional identification of toxinantitoxin molecules from Helicobacter pylori 26695 and structural elucidation of the molecular interactions. J. Biol. Chem. 286(6):4842-4853.
-
(2011)
J. Biol. Chem.
, vol.286
, Issue.6
, pp. 4842-4853
-
-
Han, K.D.1
Matsuura, A.2
Ahn, H.C.3
Kwon, A.R.4
Min, Y.H.5
Park, H.J.6
Won, H.S.7
Park, S.J.8
Kim, D.Y.9
Lee, B.J.10
-
29
-
-
67650517830
-
Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites
-
Hurley JM, Woychik NA. 2009. Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites. J. Biol. Chem. 284(28):18605-18613.
-
(2009)
J. Biol. Chem.
, vol.284
, Issue.28
, pp. 18605-18613
-
-
Hurley, J.M.1
Woychik, N.A.2
-
30
-
-
57649155916
-
Doc of prophage P1 is inhibited by its antitoxin partner Phd through fold complementation
-
Garcia-Pino A, Christensen-Dalsgaard M, Wyns L, Yarmolinsky M, Magnuson RD, Gerdes K, Loris R. 2008. Doc of prophage P1 is inhibited by its antitoxin partner Phd through fold complementation. J. Biol. Chem. 283(45):30821-30827.
-
(2008)
J. Biol. Chem.
, vol.283
, Issue.45
, pp. 30821-30827
-
-
Garcia-Pino, A.1
Christensen-Dalsgaard, M.2
Wyns, L.3
Yarmolinsky, M.4
Magnuson, R.D.5
Gerdes, K.6
Loris, R.7
-
31
-
-
65549122072
-
Ectopic production of VapCs from Enterobacteria inhibits translation and trans-activates YoeB mRNA interferase
-
Winther KS, Gerdes K. 2009. Ectopic production of VapCs from Enterobacteria inhibits translation and trans-activates YoeB mRNA interferase. Mol. Microbiol. 72(4):918-930.
-
(2009)
Mol. Microbiol.
, vol.72
, Issue.4
, pp. 918-930
-
-
Winther, K.S.1
Gerdes, K.2
-
32
-
-
34548496904
-
What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome
-
Tsilibaris V, Maenhaut-Michel G, Mine N, Van Melderen L. 2007. What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome. J. Bacteriol. 189(17):6101-6108.
-
(2007)
J. Bacteriol.
, vol.189
, Issue.17
, pp. 6101-6108
-
-
Tsilibaris, V.1
Maenhaut-Michel, G.2
Mine, N.3
Van Melderen, L.4
-
33
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A. 97(12):6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, Issue.12
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
34
-
-
0029065955
-
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
-
Cherepanov PP, Wackernagel W. 1995. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158(1):9-14.
-
(1995)
Gene
, vol.158
, Issue.1
, pp. 9-14
-
-
Cherepanov, P.P.1
Wackernagel, W.2
-
35
-
-
0038797797
-
RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA
-
Christensen SK, Gerdes K. 2003. RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA. Mol. Microbiol. 48(5):1389-1400.
-
(2003)
Mol. Microbiol.
, vol.48
, Issue.5
, pp. 1389-1400
-
-
Christensen, S.K.1
Gerdes, K.2
-
36
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
Masse E, Escorcia FE, Gottesman S. 2003. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev. 17(19):2374-2383.
-
(2003)
Genes Dev.
, vol.17
, Issue.19
, pp. 2374-2383
-
-
Masse, E.1
Escorcia, F.E.2
Gottesman, S.3
-
37
-
-
84857963742
-
Characterization of Escherichia coli dinJ-yafQ toxin-antitoxin system using insights from mutagenesis data
-
Armalyte J, Jurenaite M, Beinoraviciute G, Teiserskas J, Suziedeliene E. 2012. Characterization of Escherichia coli dinJ-yafQ toxin-antitoxin system using insights from mutagenesis data. J. Bacteriol. 194(6): 1523-1532.
-
(2012)
J. Bacteriol.
, vol.194
, Issue.6
, pp. 1523-1532
-
-
Armalyte, J.1
Jurenaite, M.2
Beinoraviciute, G.3
Teiserskas, J.4
Suziedeliene, E.5
-
38
-
-
1642483754
-
Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: involvement of the yefMyoeB toxin-antitoxin system
-
Christensen SK, Maenhaut-Michel G, Mine N, Gottesman S, Gerdes K, Van Melderen L. 2004. Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: involvement of the yefMyoeB toxin-antitoxin system. Mol. Microbiol. 51(6):1705-1717.
-
(2004)
Mol. Microbiol.
, vol.51
, Issue.6
, pp. 1705-1717
-
-
Christensen, S.K.1
Maenhaut-Michel, G.2
Mine, N.3
Gottesman, S.4
Gerdes, K.5
Van Melderen, L.6
-
39
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, Noller HF, Bustamante C, Tinoco I. 2008. Following translation by single ribosomes one codon at a time. Nature 452(7187):598-603.
-
(2008)
Nature
, vol.452
, Issue.7187
, pp. 598-603
-
-
Wen, J.D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.C.4
Yoshimura, S.H.5
Noller, H.F.6
Bustamante, C.7
Tinoco, I.8
-
40
-
-
33846235054
-
Naturally occurring adenines within mRNA coding sequences affect ribosome binding and expression in Escherichia coli
-
Brock JE, Paz RL, Cottle P, Janssen GR. 2007. Naturally occurring adenines within mRNA coding sequences affect ribosome binding and expression in Escherichia coli. J. Bacteriol. 189(2):501-510.
-
(2007)
J. Bacteriol.
, vol.189
, Issue.2
, pp. 501-510
-
-
Brock, J.E.1
Paz, R.L.2
Cottle, P.3
Janssen, G.R.4
-
41
-
-
79955047348
-
Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA
-
Lemke JJ, Sanchez-Vazquez P, Burgos HL, Hedberg G, Ross W, Gourse RL. 2011. Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA. Proc. Natl. Acad. Sci. U. S. A. 108(14):5712-5717.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, Issue.14
, pp. 5712-5717
-
-
Lemke, J.J.1
Sanchez-Vazquez, P.2
Burgos, H.L.3
Hedberg, G.4
Ross, W.5
Gourse, R.L.6
|