Bacillus subtilis trp leader RNA. Rnase J1 endonuclease cleavage specificity and PNPase processing

Journal of Biological Chemistry

Volumn 284, Issue 39, 2009, Pages 26394-26401

  Deikus, Gintaras ^a   Bechhofer, David H ^a,b  

^a MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^b NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLUS SUBTILIS; CLEAVAGE SITES; CLEAVAGE SPECIFICITY; ENDONUCLEASES; EXONUCLEASE; POLYNUCLEOTIDE PHOSPHORYLASE; PROCESSIVITY; RNA DECAY; SMALL SIZE; STEM-LOOP STRUCTURES; TARGET SITES; WILD TYPES;

AMINO ACIDS; BACTERIOLOGY; NUCLEIC ACIDS; NUCLEOTIDES; RNA; TARGETS; TRANSCRIPTION;

ENZYMES;

NUCLEOTIDE; PHOSPHODIESTERASE I; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RIBONUCLEASE; RIBONUCLEASE J1; RNA; SPLEEN EXONUCLEASE; TRP LEADER RNA; TRYPTOPHAN; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; CONTROLLED STUDY; ENZYME MODIFICATION; ENZYME SPECIFICITY; GENETIC TRANSCRIPTION; HALF LIFE TIME; MOLECULAR RECOGNITION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; PROMOTER REGION; RNA METABOLISM; RNA SEQUENCE; RNA STABILITY; RNA STRUCTURE;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; BASE SEQUENCE; BINDING SITES; BLOTTING, NORTHERN; ENDORIBONUCLEASES; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEIC ACID CONFORMATION; OPERON; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RNA STABILITY; RNA, BACTERIAL; RNA-BINDING PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID; SUBSTRATE SPECIFICITY; TRANSCRIPTION FACTORS; TRYPTOPHAN;

BACILLUS SUBTILIS;

EID: 70350374351     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.015875     Document Type: Article

References (35)

1. Deikus, G., Condon, C., and Bechhofer, D. H. (2008) J. Biol. Chem. 283, 17158-17167
2. Li de la Sierra-Gallay, I., Zig, L., Jamalli, A., and Putzer, H. (2008) Nat. Struct. Mol. Biol. 15, 206-212
3. Mathy, N., Bénard, L., Pellegrini, O., Daou, R., Wen, T., and Condon, C. (2007) Cell 129, 681-692
4. Jiang, X., and Belasco, J. G. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 9211-9216
5. Mackie, G. A. (1998) Nature 395, 720-723
6. Tock, M. R., Walsh, A. P., Carroll, G., and McDowall, K. J. (2000) J. Biol. Chem. 275, 8726-8732
7. McLaren, R. S., Newbury, S. F., Dance, G. S., Causton, H. C., and Higgins, C. F. (1991) J. Mol. Biol. 221, 81-95
8. Spickler, C., and Mackie, G. A. (2000) J. Bacteriol. 182, 2422-2427
9. Carpousis, A. J. (2007) Annu Rev. Microbiol. 61, 71-87
10. Coburn, G. A., and Mackie, G. A. (1999) Prog Nucleic Acid Res. Mol. Biol. 62, 55-108
11. Kushner, S. R. (2002) J. Bacteriol. 184, 4658-4665; discussion 4657
12. Mackie, G. A. (2000) J. Biol. Chem. 275, 25069-25072
13. Jiang, X., Diwa, A., and Belasco, J. G. (2000) J. Bacteriol. 182, 2468-2475
14. Celesnik, H., Deana, A., and Belasco, J. G. (2007) Mol. Cell 27, 79-90
15. Deana, A., Celesnik, H., and Belasco, J. G. (2008) Nature 451, 355-358
16. Even, S., Pellegrini, O., Zig, L., Labas, V., Vinh, J., Bréchemmier-Baey, D., and Putzer, H. (2005) Nucleic Acids Res. 33, 2141-2152
17. Choonee, N., Even, S., Zig, L., and Putzer, H. (2007) Nucleic Acids Res. 35, 1578-1588
18. Yao, S., Blaustein, J. B., and Bechhofer, D. H. (2007) Nucleic Acids Res. 35, 4464-4473
19. Mäder, U., Zig, L., Kretschmer, J., Homuth, G., and Putzer, H. (2008) Mol. Microbiol. 70, 183-196
20. Bechhofer, D. H. (2009) Prog. Mol. Biol. Transl. Sci. 85, 231-273
21. Babitzke, P., and Gollnick, P. (2001) J. Bacteriol. 183, 5795-5802
22. Henkin, T. M., and Yanofsky, C. (2002) Bioessays. 24, 700-707
23. Deikus, G., and Bechhofer, D. H. (2007) J. Biol. Chem. 282, 20238-20244
24. Deikus, G., Babitzke, P., and Bechhofer, D. H. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 2747-2751
25. Britton, R. A., Wen, T., Schaefer, L., Pellegrini, O., Uicker, W. C., Mathy, N., Tobin, C., Daou, R., Szyk, J., and Condon, C. (2007) Mol. Microbiol. 63, 127-138
26. Petit, M. A., Dervyn, E., Rose, M., Entian, K. D., McGovern, S., Ehrlich, S. D., and Bruand, C. (1998) Mol. Microbiol. 29, 261-273
27. Grant, S. G., Jessee, J., Bloom, F. R., and Hanahan, D. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 4645-4649
28. Daou-Chabo, R., Mathy, N., Benard, L., and Condon, C. (2009) Mol. Microbiol. 71, 1538-1550
29. Zuker, M. (2003) Nucleic Acids Res. 31, 3406-3415
30. Hambraeus, G., von Wachenfeldt, C., and Hederstedt, L. (2003) Mol. Genet. Genomics 269, 706-714
31. Sharp, J. S., and Bechhofer, D. H. (2005) Mol. Microbiol. 57, 484-495
32. Hambraeus, G., Karhumaa, K., and Rutberg, B. (2002) Microbiology 148, 1795-1803
33. Ohki, R., and Tateno, K. (2004) J. Bacteriol. 186, 7450-7455
34. McGraw, A. P., Bevilacqua, P. C., and Babitzke, P. (2007) RNA 13, 2020-2033
35. Brosius, J. (1992) Methods Enzymol. 216, 469-483