메뉴 건너뛰기




Volumn 40, Issue 22, 2012, Pages 11659-11672

SR1-a small RNA with two remarkably conserved functions

Author keywords

[No Author keywords available]

Indexed keywords

SR1; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 84871240106     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks895     Document Type: Article
Times cited : (38)

References (38)
  • 1
    • 84863924309 scopus 로고    scopus 로고
    • Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
    • pii a003798
    • Gottesman, S. and Storz, G. (2011) Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb. Perspect. Biol., 3, pii: a003798.
    • (2011) Cold Spring Harb. Perspect. Biol , vol.3
    • Gottesman, S.1    Storz, G.2
  • 2
    • 61749088917 scopus 로고    scopus 로고
    • Bacterial chromosome-encoded small regulatory RNAs
    • Brantl, S. (2009) Bacterial chromosome-encoded small regulatory RNAs. Future Microbiol., 4, 85-103.
    • (2009) Future Microbiol , vol.4 , pp. 85-103
    • Brantl, S.1
  • 3
    • 78049392640 scopus 로고    scopus 로고
    • Identification of regulatory RNAs in Bacillus subtilis
    • Irnov, K., Sharma, C. M., Vogel, J. and Winkler, W. C. (2010) Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res., 38, 6637-6651.
    • (2010) Nucleic Acids Res , vol.38 , pp. 6637-6651
    • Irnov, K.1    Sharma, C.M.2    Vogel, J.3    Winkler, W.C.4
  • 4
    • 70350159135 scopus 로고    scopus 로고
    • Transcriptionally active regions in the genome of Bacillus subtilis
    • Rasmussen, S., Nielsen, H. B. and Jarmer, H. (2009) Transcriptionally active regions in the genome of Bacillus subtilis. Mol. Microbiol., 73, 1043-1057.
    • (2009) Mol. Microbiol , vol.73 , pp. 1043-1057
    • Rasmussen, S.1    Nielsen, H.B.2    Jarmer, H.3
  • 8
    • 34247099372 scopus 로고    scopus 로고
    • Regulatory mechanisms employed by cis-encoded antisense RNAs
    • Brantl, S. (2007) Regulatory mechanisms employed by cis-encoded antisense RNAs. Curr. Op. Microbiol., 10, 102-109.
    • (2007) Curr. Op. Microbiol , vol.10 , pp. 102-109
    • Brantl, S.1
  • 9
    • 0029113833 scopus 로고
    • Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII
    • Morfeldt, E., Taylor, D., von Gabain, A. and Arvidson, S. (1995) Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII. EMBO J., 14, 4569-4577.
    • (1995) EMBO J , vol.14 , pp. 4569-4577
    • Morfeldt, E.1    Taylor, D.2    Von Gabain, A.3    Arvidson, S.4
  • 10
    • 34249881878 scopus 로고    scopus 로고
    • Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism
    • Boisset, S., Geissmann, T., Huntzinger, E., Fechter, P., Bendridi, N., Possedko, M., Chevalier, C., Helfer, A. C., Benito, Y., Jacquier, A. et al. (2007) Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev., 21, 1353-1366.
    • (2007) Genes Dev , vol.21 , pp. 1353-1366
    • Boisset, S.1    Geissmann, T.2    Huntzinger, E.3    Fechter, P.4    Bendridi, N.5    Possedko, M.6    Chevalier, C.7    Helfer, A.C.8    Benito, Y.9    Jacquier, A.10
  • 12
    • 38049115217 scopus 로고    scopus 로고
    • A dual function for a bacterial small RNA: SgrS performs base-pairing dependent regulation and encodes a functional polypeptide
    • Wadler, C. S. and Vanderpool, C. K. (2007) A dual function for a bacterial small RNA: SgrS performs base-pairing dependent regulation and encodes a functional polypeptide. Proc. Natl Acad. Sci. USA, 104, 20454-20459.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 20454-20459
    • Wadler, C.S.1    Vanderpool, C.K.2
  • 13
    • 0036194029 scopus 로고    scopus 로고
    • Clostridial VirR/VirS regulon involves a regulatory RNA molecule for expression of toxins
    • Shimizu, T., Yaguchi, H., Ohtani, K., Banu, S. and Hayasi, H. (2002) Clostridial VirR/VirS regulon involves a regulatory RNA molecule for expression of toxins. Mol. Microbiol., 43, 257-265.
    • (2002) Mol. Microbiol , vol.43 , pp. 257-265
    • Shimizu, T.1    Yaguchi, H.2    Ohtani, K.3    Banu, S.4    Hayasi, H.5
  • 15
    • 36549029160 scopus 로고    scopus 로고
    • RivR and the small RNA RivX: The missing links between the CovR regulatory cascade and the Mga regulon
    • Roberts, S. A. and Scott, J. R. (2007) RivR and the small RNA RivX: the missing links between the CovR regulatory cascade and the Mga regulon. Mol. Microbiol., 66, 1506-1522.
    • (2007) Mol. Microbiol , vol.66 , pp. 1506-1522
    • Roberts, S.A.1    Scott, J.R.2
  • 16
    • 72049118448 scopus 로고    scopus 로고
    • Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides
    • Berghoff, B., Glaeser, J., Sharma, C. M., Vogel, J. and Klug, G. (2009) Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides. Mol. Microbiol., 74, 1497-1512.
    • (2009) Mol. Microbiol , vol.74 , pp. 1497-1512
    • Berghoff, B.1    Glaeser, J.2    Sharma, C.M.3    Vogel, J.4    Klug, G.5
  • 17
    • 26244461596 scopus 로고    scopus 로고
    • Implication of CcpN in the regulation of a novel untranslated RNA (SR1) in B. subtilis
    • Licht, A., Preis, S. and Brantl, S. (2005) Implication of CcpN in the regulation of a novel untranslated RNA (SR1) in B. subtilis. Mol. Microbiol., 58, 189-206.
    • (2005) Mol. Microbiol , vol.58 , pp. 189-206
    • Licht, A.1    Preis, S.2    Brantl, S.3
  • 18
    • 33749165741 scopus 로고    scopus 로고
    • The small untranslated RNA SR1 from the B. subtilis genome is involved in the regulation of arginine catabolism
    • Heidrich, N., Chinali, A., Gerth, U. and Brantl, S. (2006) The small untranslated RNA SR1 from the B. subtilis genome is involved in the regulation of arginine catabolism. Mol. Microbiol., 62, 520-536.
    • (2006) Mol. Microbiol , vol.62 , pp. 520-536
    • Heidrich, N.1    Chinali, A.2    Gerth, U.3    Brantl, S.4
  • 19
    • 34547829267 scopus 로고    scopus 로고
    • In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA
    • Heidrich, N., Moll, I. and Brantl, S. (2007) In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA. Nucleic Acids Res., 35, 4331-4346.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4331-4346
    • Heidrich, N.1    Moll, I.2    Brantl, S.3
  • 20
    • 44649111763 scopus 로고    scopus 로고
    • Identification of ligands affecting the activity of the transcriptional repressor CcpN from Bacillus subtilis
    • Licht, A., Golbik, R. and Brantl, S. (2008) Identification of ligands affecting the activity of the transcriptional repressor CcpN from Bacillus subtilis. J. Mol. Biol., 380, 17-30.
    • (2008) J. Mol. Biol , vol.380 , pp. 17-30
    • Licht, A.1    Golbik, R.2    Brantl, S.3
  • 21
    • 71049188000 scopus 로고    scopus 로고
    • The transcriptional repressor CcpN from Bacillus subtilis uses different repression mechanism at different promoters
    • Licht, A. and Brantl, S. (2009) The transcriptional repressor CcpN from Bacillus subtilis uses different repression mechanism at different promoters. J. Biol. Chem., 284, 30032-30038.
    • (2009) J. Biol. Chem , vol.284 , pp. 30032-30038
    • Licht, A.1    Brantl, S.2
  • 22
    • 77952157242 scopus 로고    scopus 로고
    • A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon
    • Gimpel, M., Heidrich, N., Mä der, U., Krü gel, H. and Brantl, S. (2010) A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon. Mol. Microbiol., 76, 990-1009.
    • (2010) Mol. Microbiol , vol.76 , pp. 990-1009
    • Gimpel, M.1    Heidrich, N.2    Mäder, U.3    Krügel, H.4    Brantl, S.5
  • 24
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh, K., Misawa, K., Kuma, K. and Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res., 30, 3059-3066.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 25
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. and Crandall, K. A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 26
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F. and Huelsenbeck, J. P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 27
    • 70349251718 scopus 로고    scopus 로고
    • Search for additional targets of the transcriptional regulator CcpN from Bacillus subtilis
    • Eckart, R. A., Brantl, S. and Licht, A. (2009) Search for additional targets of the transcriptional regulator CcpN from Bacillus subtilis. FEMS Microbiol. Lett., 299, 223-231.
    • (2009) FEMS Microbiol. Lett , vol.299 , pp. 223-231
    • Eckart, R.A.1    Brantl, S.2    Licht, A.3
  • 28
    • 0021193861 scopus 로고
    • Construction of a Bacillus subtilis double mutant deficient in extracellular alkaline and neutral proteases
    • Kawamura, F. and Doi, R. H. (1984) Construction of a Bacillus subtilis double mutant deficient in extracellular alkaline and neutral proteases. J. Bacteriol., 160, 442-444.
    • (1984) J. Bacteriol , vol.160 , pp. 442-444
    • Kawamura, F.1    Doi, R.H.2
  • 29
    • 0027945225 scopus 로고
    • The copR gene product of plasmid pIP501 acts as a transcriptional repressor at the essential repR promoter
    • Brantl, S. (1994) The copR gene product of plasmid pIP501 acts as a transcriptional repressor at the essential repR promoter. Mol. Microbiol., 14, 473-483.
    • (1994) Mol. Microbiol , vol.14 , pp. 473-483
    • Brantl, S.1
  • 30
    • 70449700233 scopus 로고    scopus 로고
    • Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence
    • Horler, R. S. P. and Vanderpool, C. K. (2009) Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Res., 37, 5465-5476.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5465-5476
    • Horler, R.S.P.1    Vanderpool, C.K.2
  • 31
    • 0033759266 scopus 로고    scopus 로고
    • Regulation of carbon catabolism in Bacillus species
    • Stü lke, J. and Hillen, W. (2000) Regulation of carbon catabolism in Bacillus species. Annu. Rev. Microbiol., 54, 849-880.
    • (2000) Annu. Rev. Microbiol , vol.54 , pp. 849-880
    • Stülke, J.1    Hillen, W.2
  • 32
    • 14844295003 scopus 로고    scopus 로고
    • CcpN (YqzB a novel regulator for CcpA-independent catabolite repression of Bacillus subtilis gluconeogenic genes
    • Servant, P., Le Coq, D. and Aymerich, S. (2005) CcpN (YqzB), a novel regulator for CcpA-independent catabolite repression of Bacillus subtilis gluconeogenic genes. Mol. Microbiol., 55, 1435-1451.
    • (2005) Mol. Microbiol , vol.55 , pp. 1435-1451
    • Servant, P.1    Le Coq, D.2    Aymerich, S.3
  • 33
    • 70449725229 scopus 로고    scopus 로고
    • Characterization of homologs of the small RNA SgrS reveals diversity in function
    • Wadler, C. S. and Vanderpool, C. K. (2009) Characterization of homologs of the small RNA SgrS reveals diversity in function. Nucleic Acids Res., 37, 5477-5485.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5477-5485
    • Wadler, C.S.1    Vanderpool, C.K.2
  • 34
    • 79952327376 scopus 로고    scopus 로고
    • Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae
    • Gö pel, Y., Lü ttmann, D., Heroven, A. K., Reichenbach, G., Dersch, P. and Gö rke, B. (2011) Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae. Nucleic Acids Res., 39, 1294-1309.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1294-1309
    • Göpel, Y.1    Lüttmann, D.2    Heroven, A.K.3    Reichenbach, G.4    Dersch, P.5    Görke, B.6
  • 35
    • 35948970194 scopus 로고    scopus 로고
    • A small RNA regulates multiple ABC transporter mRNAs by targeting C/A rich elements inside and upstream of ribosome-binding sites
    • Sharma, C., Darfeuille, F., Plantinga, T. and Vogel, J. (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A rich elements inside and upstream of ribosome-binding sites. Genes Dev., 21, 2804-2817.
    • (2007) Genes Dev , vol.21 , pp. 2804-2817
    • Sharma, C.1    Darfeuille, F.2    Plantinga, T.3    Vogel, J.4
  • 36
    • 10644230266 scopus 로고    scopus 로고
    • A genomic timescale of prokaryote evolution: Insight into the origin of methanogenesis phototrophy, and the colonization of land
    • Battistuzzi, F. U., Feijao, A. and Hedges, S. B. (2004) A genomic timescale of prokaryote evolution: insight into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol. Biol., 4, 44.
    • (2004) BMC Evol. Biol , vol.4 , pp. 44
    • Battistuzzi, F.U.1    Feijao, A.2    Hedges, S.B.3
  • 37
    • 78649586895 scopus 로고    scopus 로고
    • The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA
    • Richard, A. L., Withey, J. H., Beyhan, S., Yildiz, F. and DiRita, V. J. (2010) The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA. Mol. Microbiol., 78, 1171-1181.
    • (2010) Mol. Microbiol , vol.78 , pp. 1171-1181
    • Richard, A.L.1    Withey, J.H.2    Beyhan, S.3    Yildiz, F.4    Dirita, V.J.5
  • 38
    • 84859451156 scopus 로고    scopus 로고
    • The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair
    • Papenfort, K., Podkaminski, D., Hinton, J. C. and Vogel, J. (2012) The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proc. Natl Acad. Sci. USA, 109, E757-E764.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109
    • Papenfort, K.1    Podkaminski, D.2    Hinton, J.C.3    Vogel, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.