5′ End-independent RNase J1 endonuclease cleavage of Bacillus subtilis model RNA

Journal of Biological Chemistry

Volumn 286, Issue 40, 2011, Pages 34932-34940

  Deikus, Gintaras ^a   Bechhofer, David H ^a  

^a MOUNT SINAI SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLUS SUBTILIS; ENDONUCLEASES; HALF LIVES; IN-VITRO; IN-VIVO; INTERNAL TARGETS; RNA DECAY; SINGLE-STRANDED REGION;

BACILLI; BACTERIOLOGY; DECAY (ORGANIC); RADIOACTIVITY;

RNA;

5' END INDEPENDENT RIBONUCLEASE J1; ENDONUCLEASE; MESSENGER RNA; RIBONUCLEASE; RIBONUCLEASE Y; UNCLASSIFIED DRUG; RNA; RNASE J, THERMUS THERMOPHILUS;

ARTICLE; BACILLUS SUBTILIS; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME METABOLISM; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN TARGETING; RNA CLEAVAGE; RNA STABILITY; BIOLOGICAL MODEL; CONFORMATION; GENE DELETION; GENETICS; KINETICS; METABOLISM; MOLECULAR GENETICS; MUTATION; PLASMID; TIME;

BACILLUS SUBTILIS;

BACILLUS SUBTILIS; BASE SEQUENCE; GENE DELETION; KINETICS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEIC ACID CONFORMATION; PLASMIDS; RIBONUCLEASES; RNA; TIME FACTORS;

EID: 80053416799     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.287409     Document Type: Article

References (35)

1. Bechhofer, D. H. (2009) Prog. Nucleic Acids Res. Mol. Biol. 85, 231-273
2. Babitzke, P. (1997) Mol. Microbiol. 26, 1-9
3. Henkin, T. M., and Yanofsky, C. (2002) Bioessays 24, 700-707
4. Du, H., Yakhnin, A. V., Dharmaraj, S., and Babitzke, P. (2000) J. Bacteriol. 182, 1819-1827
5. Deikus, G., Babitzke, P., and Bechhofer, D. H. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 2747-2751
6. Deikus, G., and Bechhofer, D. H. (2007) J. Biol. Chem. 282, 20238-20244
7. Deikus, G., Condon, C., and Bechhofer, D. H. (2008) J. Biol. Chem. 283, 17158-17167
8. Deikus, G., and Bechhofer, D. H. (2009) J. Biol. Chem. 284, 26394-26401
9. Even, S., Pellegrini, O., Zig, L., Labas, V., Vinh, J., Bréchemmier-Baey, D., and Putzer, H. (2005) Nucleic Acids Res. 33, 2141-2152
10. Li de la Sierra-Gallay, I., Zig, L., Jamalli, A., and Putzer, H. (2008) Nat. Struct. Mol. Biol. 15, 206-212
11. Condon, C. (2010) RNA Biol. 7, 316-321
12. Mathy, N., Bénard, L., Pellegrini, O., Daou, R., Wen, T., and Condon, C. (2007) Cell 129, 681-692
13. Mathy, N., Hébert, A., Mervelet, P., Bénard, L., Dorléans, A., Li de la Sierra-Gallay, I., Noirot, P., Putzer, H., and Condon, C. (2010) Mol. Microbiol. 75, 489-498
14. Mäder, U., Zig, L., Kretschmer, J., Homuth, G., and Putzer, H. (2008) Mol. Microbiol 70, 183-196
15. Oussenko, I. A., Abe, T., Ujiie, H., Muto, A., and Bechhofer, D. H. (2005) J. Bacteriol 187, 2758-2767
16. Celesnik, H., Deana, A., and Belasco, J. G. (2007) Mol. Cell 27, 79-90
17. Deana, A., Celesnik, H., and Belasco, J. G. (2008) Nature 451, 355-358
18. Commichau, F. M., Rothe, F. M., Herzberg, C., Wagner, E., Hellwig, D., Lehnik-Habrink, M., Hammer, E., Völker, U., and Stülke, J. (2009) Mol. Cell Proteomics 8, 1350-1360
19. Shahbabian, K., Jamalli, A., Zig, L., and Putzer, H. (2009) EMBO J. 28, 3523-3533
20. Britton, R. A., Wen, T., Schaefer, L., Pellegrini, O., Uicker, W. C., Mathy, N., Tobin, C., Daou, R., Szyk, J., and Condon, C. (2007) Mol. Microbiol. 63, 127-138
21. Petit, M. A., Dervyn, E., Rose, M., Entian, K. D., McGovern, S., Ehrlich, S. D., and Bruand, C. (1998) Mol. Microbiol. 29, 261-273
22. Grant, S. G., Jessee, J., Bloom, F. R., and Hanahan, D. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 4645-4649
23. Bechhofer, D. H., and Stasinopoulos, S. J. (1998) J. Bacteriol. 180, 3470-3473
24. Condon, C., Pellegrini, O., Mathy, N., Bénard, L., Redko, Y., Oussenko, I. A., Deikus, G., and Bechhofer, D. H. (2008) Methods Enzymol. 447, 277-308
25. Yakhnin, A. V., Trimble, J. J., Chiaro, C. R., and Babitzke, P. (2000) J. Biol. Chem. 275, 4519-4524
26. Sharp, J. S., and Bechhofer, D. H. (2003) J. Bacteriol 185, 5372-5379
27. Daou-Chabo, R., Mathy, N., Bénard, L., and Condon, C. (2009) Mol. Microbiol. 71, 1538-1550
28. Garrey, S. M., and Mackie, G. A. (2011) Mol. Microbiol. 80, 1613-1624
29. Garrey, S. M., Blech, M., Riffell, J. L., Hankins, J. S., Stickney, L. M., Diver, M., Hsu, Y. H., Kunanithy, V., and Mackie, G. A. (2009) J. Biol. Chem. 284, 31843-31850
30. Baker, K. E., and Mackie, G. A. (2003) Mol. Microbiol. 47, 75-88
31. Kime, L., Jourdan, S. S., Stead, J. A., Hidalgo-Sastre, A., and McDowall, K. J. (2010) Mol. Microbiol. 76, 590-604
32. Lehnik-Habrink, M., Pfortner, H., Rempeters, L., Pietack, N., Herzberg, C., and Stulke, J. (2010) Mol. Microbiol. 77, 958-971
33. Wang, W., and Bechhofer, D. H. (1996) J. Bacteriol. 178, 2375-2382
34. Brosius, J. (1992) Methods Enzymol. 216, 469-483
35. Richards, J., Liu, Q., Pellegrini, O., Celesnik, H., Yao, S., Bechhofer, D. H., Condon C., and Belasco, J. G. (2011) Mol. Cell, in press