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Volumn 76, Issue 3, 2010, Pages 590-604

Rapid cleavage of RNA by RNase e in the absence of 5′ monophosphate stimulation

Author keywords

[No Author keywords available]

Indexed keywords

5' MONOPHOSPHATE; MESSENGER RNA; OLIGONUCLEOTIDE; PHOSPHATE; RIBONUCLEASE E; UNCLASSIFIED DRUG; UNTRANSLATED RNA; BACTERIAL RNA; DINUCLEOSIDE PHOSPHATE; ESCHERICHIA COLI PROTEIN; PROTEIN BINDING; RIBONUCLEASE;

EID: 77951539769     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2009.06935.x     Document Type: Article
Times cited : (65)

References (86)
  • 2
    • 58249102413 scopus 로고    scopus 로고
    • The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R
    • Andrade, J.M., Hajnsdorf, E., Regnier, P. Arraiano, C.M. (2009b) The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R. RNA 15 : 316 326.
    • (2009) RNA , vol.15 , pp. 316-326
    • Andrade, J.M.1    Hajnsdorf, E.2    Regnier, P.3    Arraiano, C.M.4
  • 3
    • 11844254846 scopus 로고    scopus 로고
    • Secondary structure prediction of interacting RNA molecules
    • DOI 10.1016/j.jmb.2004.10.082, PII S0022283604014032
    • Andronescu, M., Zhang, Z.C. Condon, A. (2005) Secondary structure prediction of interacting RNA molecules. J Mol Biol 345 : 987 1001. (Pubitemid 40092219)
    • (2005) Journal of Molecular Biology , vol.345 , Issue.5 , pp. 987-1001
    • Andronescu, M.1    Zhang, Z.C.2    Condon, A.3
  • 4
    • 0017887243 scopus 로고
    • A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA
    • Apirion, D. Lassar, A.B. (1978) Conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA. J Biol Chem 253 : 1738 1742. (Pubitemid 8312357)
    • (1978) Journal of Biological Chemistry , vol.253 , Issue.5 , pp. 1738-1742
    • Apirion, D.1    Lassar, A.B.2
  • 5
    • 0037221712 scopus 로고    scopus 로고
    • Ectopic RNase e sites promote bypass of 5′-end-dependent mRNA decay in Escherichia coli
    • Baker, K.E. Mackie, G.A. (2003) Ectopic RNase E sites promote bypass of 5′-end-dependent mRNA decay in Escherichia coli. Mol Microbiol 47 : 75 88.
    • (2003) Mol Microbiol , vol.47 , pp. 75-88
    • Baker, K.E.1    MacKie, G.A.2
  • 8
    • 23844461149 scopus 로고    scopus 로고
    • Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1,6-bisphosphate aldolase in Escherichia coli
    • DOI 10.1111/j.1365-2958.2005.04762.x
    • Bardey, V., Vallet, C., Robas, N., Charpentier, B., Thouvenot, B., Mougin, A., et al. (2005) Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1,6-bisphosphate aldolase in Escherichia coli. Mol Microbiol 57 : 1265 1287. (Pubitemid 41176523)
    • (2005) Molecular Microbiology , vol.57 , Issue.5 , pp. 1265-1287
    • Bardey, V.1    Vallet, C.2    Robas, N.3    Charpentier, B.4    Thouvenot, B.5    Mougin, A.6    Hajnsdorf, E.7    Regnier, P.8    Springer, M.9    Branlant, C.10
  • 9
    • 0024244201 scopus 로고
    • Mechanisms of messenger RNA decay in bacteria: A perspective
    • Belasco, J.G. Higgins, C.F. (1988) Mechanisms of messenger RNA decay in bacteria: a perspective. Gene 72 : 15 23.
    • (1988) Gene , vol.72 , pp. 15-23
    • Belasco, J.G.1    Higgins, C.F.2
  • 10
    • 0026492668 scopus 로고
    • Control of RNase E-mediated RNA degradation by 5′-terminal base-pairing in Escherichia coli
    • Bouvet, P. Belasco, J.G. (1992) Control of RNase E-mediated RNA degradation by 5′-terminal base-pairing in Escherichia coli. Nature 360 : 488 491.
    • (1992) Nature , vol.360 , pp. 488-491
    • Bouvet, P.1    Belasco, J.G.2
  • 11
    • 0032541436 scopus 로고    scopus 로고
    • Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli
    • DOI 10.1093/emboj/17.16.4790
    • Braun, F., Le Derout, J. Regnier, P. (1998) Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli. EMBO J 17 : 4790 4797. (Pubitemid 28377179)
    • (1998) EMBO Journal , vol.17 , Issue.16 , pp. 4790-4797
    • Braun, F.1    Le Derout, J.2    Regnier, P.3
  • 12
    • 0344394979 scopus 로고    scopus 로고
    • The quaternary structure of RNase G from Escherichia coli
    • DOI 10.1046/j.1365-2958.2003.03775.x
    • Briant, D.J., Hankins, J.S., Cook, M.A. Mackie, G.A. (2003) The quaternary structure of RNase G from Escherichia coli. Mol Microbiol 50 : 1381 1390. (Pubitemid 37475867)
    • (2003) Molecular Microbiology , vol.50 , Issue.4 , pp. 1381-1390
    • Briant, D.J.1    Hankins, J.S.2    Cook, M.A.3    Mackie, G.A.4
  • 13
    • 33751020853 scopus 로고    scopus 로고
    • Quadruplex DNA: Sequence, topology and structure
    • DOI 10.1093/nar/gkl655
    • Burge, S., Parkinson, G.N., Hazel, P., Todd, A.K. Neidle, S. (2006) Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res 34 : 5402 5415. (Pubitemid 44742430)
    • (2006) Nucleic Acids Research , vol.34 , Issue.19 , pp. 5402-5415
    • Burge, S.1    Parkinson, G.N.2    Hazel, P.3    Todd, A.K.4    Neidle, S.5
  • 14
    • 0344412947 scopus 로고    scopus 로고
    • Quaternary structure and catalytic activity of the Escherichia coli ribonuclease e amino-terminal catalytic domain
    • Callaghan, A.J., Grossmann, J.G., Redko, Y.U., Ilag, L.L., Moncrieffe, M.C., Symmons, M.F., et al. (2003) Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain. Biochemistry 42 : 13848 13855.
    • (2003) Biochemistry , vol.42 , pp. 13848-13855
    • Callaghan, A.J.1    Grossmann, J.G.2    Redko, Y.U.3    Ilag, L.L.4    Moncrieffe, M.C.5    Symmons, M.F.6
  • 15
    • 27144495430 scopus 로고    scopus 로고
    • Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover
    • DOI 10.1038/nature04084, PII N04084
    • Callaghan, A.J., Marcaida, M.J., Stead, J.A., McDowall, K.J., Scott, W.G. Luisi, B.F. (2005a) Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature 437 : 1187 1191. (Pubitemid 41509359)
    • (2005) Nature , vol.437 , Issue.7062 , pp. 1187-1191
    • Callaghan, A.J.1    Marcaida, M.J.2    Stead, J.A.3    McDowall, K.J.4    Scott, W.G.5    Luisi, B.F.6
  • 17
    • 0036549769 scopus 로고    scopus 로고
    • The Escherichia coli RNA degradosome: Structure, function and relationship to other ribonucleolytic multienyzme complexes
    • Carpousis, A.J. (2002) The Escherichia coli RNA degradosome: structure, function and relationship to other ribonucleolytic multienyzme complexes. Biochem Soc Trans 30 : 150 155.
    • (2002) Biochem Soc Trans , vol.30 , pp. 150-155
    • Carpousis, A.J.1
  • 18
    • 35548995356 scopus 로고    scopus 로고
    • The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase e
    • Carpousis, A.J. (2007) The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E. Annu Rev Microbiol 61 : 71 87.
    • (2007) Annu Rev Microbiol , vol.61 , pp. 71-87
    • Carpousis, A.J.1
  • 19
    • 0034809663 scopus 로고    scopus 로고
    • Escherichia coli RNA degradosome
    • DOI 10.1016/S0076-6879(01)42556-0
    • Carpousis, A.J., Leroy, A., Vanzo, N. Khemici, V. (2001) Escherichia coli RNA degradosome. In Ribonucleases, Part B. Nicholson, A. (ed). (Pubitemid 32911954)
    • (2001) Methods in Enzymology , vol.342 , pp. 333-345
    • Carpousis, A.J.1    Leroy, A.2    Vanzo, N.3    Khemici, V.4
  • 21
    • 33748742341 scopus 로고    scopus 로고
    • Retention of core catalytic functions by a conserved minimal ribonuclease e peptide that lacks the domain required for tetramer formation
    • Caruthers, J.M., Feng, Y.N., McKay, D.B. Cohen, S.N. (2006) Retention of core catalytic functions by a conserved minimal ribonuclease E peptide that lacks the domain required for tetramer formation. J Biol Chem 281 : 27046 27051.
    • (2006) J Biol Chem , vol.281 , pp. 27046-27051
    • Caruthers, J.M.1    Feng, Y.N.2    McKay, D.B.3    Cohen, S.N.4
  • 22
    • 34250875706 scopus 로고    scopus 로고
    • Initiation of RNA Decay in Escherichia coli by 5′ Pyrophosphate Removal
    • DOI 10.1016/j.molcel.2007.05.038, PII S1097276507003644
    • Celesnik, H., Deana, A. Belasco, J.G. (2007) Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal. Mol Cell 27 : 79 90. (Pubitemid 46991386)
    • (2007) Molecular Cell , vol.27 , Issue.1 , pp. 79-90
    • Celesnik, H.1    Deana, A.2    Belasco, J.G.3
  • 23
    • 0242617623 scopus 로고
    • Properties of streptavidin biotin-binding protein produced by streptomycetes
    • Chaiet, L. Wolf, F.J. (1964) Properties of streptavidin biotin-binding protein produced by streptomycetes. Arch Biochem Biophys 106 : 1 5.
    • (1964) Arch Biochem Biophys , vol.106 , pp. 1-5
    • Chaiet, L.1    Wolf, F.J.2
  • 24
    • 0032617132 scopus 로고    scopus 로고
    • Degradation of mRNA in Escherichia coli: An old problem with some new twists
    • Coburn, G.A. Mackie, G.A. (1999) Degradation of mRNA in Escherichia coli: an old problem with some new twists. Prog Nucleic Acid Res Mol Biol 62 : 55 108.
    • (1999) Prog Nucleic Acid Res Mol Biol , vol.62 , pp. 55-108
    • Coburn, G.A.1    MacKie, G.A.2
  • 25
    • 13944278373 scopus 로고    scopus 로고
    • SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments
    • DOI 10.1261/rna.7214405
    • Das, R., Laederach, A., Pearlman, S.M., Herschlag, D. Altman, R.B. (2005) SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments. RNA 11 : 344 354. (Pubitemid 40270826)
    • (2005) RNA , vol.11 , Issue.3 , pp. 344-354
    • Das, R.1    Laederach, A.2    Pearlman, S.M.3    Herschlag, D.4    Altman, R.B.5
  • 26
    • 38349117689 scopus 로고    scopus 로고
    • The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal
    • Deana, A., Celesnik, H. Belasco, J.G. (2008) The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal. Nature 451 : 355 358.
    • (2008) Nature , vol.451 , pp. 355-358
    • Deana, A.1    Celesnik, H.2    Belasco, J.G.3
  • 27
    • 32644435694 scopus 로고    scopus 로고
    • Degradation of RNA in bacteria: Comparison of mRNA and stable RNA
    • Deutscher, M.P. (2006) Degradation of RNA in bacteria: comparison of mRNA and stable RNA. Nucleic Acids Res 34 : 659 666.
    • (2006) Nucleic Acids Res , vol.34 , pp. 659-666
    • Deutscher, M.P.1
  • 29
    • 0026602761 scopus 로고
    • A 5′-terminal stem-loop structure can stabilize messenger RNA in Escherichia coli
    • Emory, S.A., Bouvet, P. Belasco, J.G. (1992) A 5′-terminal stem-loop structure can stabilize messenger RNA in Escherichia coli. Genes Dev 6 : 135 148.
    • (1992) Genes Dev , vol.6 , pp. 135-148
    • Emory, S.A.1    Bouvet, P.2    Belasco, J.G.3
  • 30
    • 0031023549 scopus 로고    scopus 로고
    • Promoter-independent cold-shock induction of cspA and its derepression at 37°C by mRNA stabilization
    • oC by mRNA stabilization. Mol Microbiol 23 : 355 364. (Pubitemid 27049188)
    • (1997) Molecular Microbiology , vol.23 , Issue.2 , pp. 355-364
    • Fang, L.1    Jiang, W.2    Bae, W.3    Inouye, M.4
  • 33
    • 0018034154 scopus 로고
    • Structural analysis and in vitro processing to p5 ribosomal RNA of a 9S RNA molecule isolated from an rne mutant of Escherichia coli
    • Ghora, B.K. Apirion, D. (1978) Structural analysis and in vitro processing to p5 ribosomal RNA of a 9S RNA molecule isolated from an rne mutant of Escherichia coli. Cell 15 : 1055 1066.
    • (1978) Cell , vol.15 , pp. 1055-1066
    • Ghora, B.K.1    Apirion, D.2
  • 34
    • 20644462362 scopus 로고    scopus 로고
    • Micros for microbes: Non-coding regulatory RNAs in bacteria
    • DOI 10.1016/j.tig.2005.05.008, PII S0168952505001381
    • Gottesman, S. (2005) Micros for microbes: Non-coding regulatory RNAs in bacteria. Trends Genet 21 : 399 404. (Pubitemid 40835726)
    • (2005) Trends in Genetics , vol.21 , Issue.7 , pp. 399-404
    • Gottesman, S.1
  • 35
    • 34250323480 scopus 로고    scopus 로고
    • Role of RNA structure and susceptibility to RNase E in regulation of a cold shock mRNA, cspA mRNA
    • DOI 10.1128/JB.00193-07
    • Hankins, J.S., Zappavigna, C., Prud'homme-Genereux, A. Mackie, G.A. (2007) Role of RNA structure and susceptibility to RNase E in regulation of a cold shock mRNA, cspA mRNA. J Bacteriol 189 : 4353 4358. (Pubitemid 46919620)
    • (2007) Journal of Bacteriology , vol.189 , Issue.12 , pp. 4353-4358
    • Hankins, J.S.1    Zappavigna, C.2    Prud'homme-Genereux, A.3    Mackie, G.A.4
  • 36
    • 0028282567 scopus 로고
    • The ompA 5' untranslated region impedes a major pathway for mRNA degradation in Escherichia coli
    • DOI 10.1111/j.1365-2958.1994.tb01058.x
    • Hansen, M.J., Chen, L.H., Fejzo, M.L.S. Belasco, J.G. (1994) The ompA 5′ untranslated region impedes a major pathway for messenger RNA degradation in Escherichia coli. Mol Microbiol 12 : 707 716. (Pubitemid 24214465)
    • (1994) Molecular Microbiology , vol.12 , Issue.5 , pp. 707-716
    • Hansen, M.J.1    Chen, L.-H.2    Fejzo, M.L.S.3    Belasco, J.G.4
  • 38
    • 0034005317 scopus 로고    scopus 로고
    • Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis
    • DOI 10.1128/JB.182.9.2468-2475.2000
    • Jiang, X.Q., Diwa, A. Belasco, J.G. (2000) Regions of RNase E important for 5′-end-dependent RNA cleavage and autoregulated synthesis. J Bacteriol 182 : 2468 2475. (Pubitemid 30212904)
    • (2000) Journal of Bacteriology , vol.182 , Issue.9 , pp. 2468-2475
    • Jiang, X.1    Diwa, A.2    Belasco, J.G.3
  • 39
    • 36849032886 scopus 로고    scopus 로고
    • Sensing of 5′ monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo
    • Jourdan, S.S. McDowall, K.J. (2008) Sensing of 5′ monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo. Mol Microbiol 67 : 102 115.
    • (2008) Mol Microbiol , vol.67 , pp. 102-115
    • Jourdan, S.S.1    McDowall, K.J.2
  • 40
    • 0034636985 scopus 로고    scopus 로고
    • Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease e
    • Kaberdin, V.R., Walsh, A.P., Jakobsen, T., McDowall, K.J. von Gabain, A. (2000) Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E. J Mol Biol 301 : 257 264.
    • (2000) J Mol Biol , vol.301 , pp. 257-264
    • Kaberdin, V.R.1    Walsh, A.P.2    Jakobsen, T.3    McDowall, K.J.4    Von Gabain, A.5
  • 41
    • 0042497078 scopus 로고    scopus 로고
    • RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli
    • Kaga, N., Umitsuki, G., Nagai, K. Wachi, M. (2002) RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli. Biosci Biotechn Bioch 66 : 2216 2220. (Pubitemid 39251226)
    • (2002) Bioscience, Biotechnology and Biochemistry , vol.66 , Issue.10 , pp. 2216-2220
    • Kaga, N.1    Umitsuki, G.2    Nagai, K.3    Wachi, M.4
  • 42
    • 54249138245 scopus 로고    scopus 로고
    • The RNase e of Escherichia coli is a membrane-binding protein
    • Khemici, V., Poljak, L., Luisi, B.F. Carpousis, A.J. (2008) The RNase E of Escherichia coli is a membrane-binding protein. Mol Microbiol 70 : 799 813.
    • (2008) Mol Microbiol , vol.70 , pp. 799-813
    • Khemici, V.1    Poljak, L.2    Luisi, B.F.3    Carpousis, A.J.4
  • 43
    • 0029889965 scopus 로고    scopus 로고
    • RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli
    • Kido, M., Yamanaka, K., Mitani, T., Niki, H., Ogura, T. Hiraga, S. (1996) RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli. J Bacteriol 178 : 3917 3925. (Pubitemid 26227210)
    • (1996) Journal of Bacteriology , vol.178 , Issue.13 , pp. 3917-3925
    • Kido, M.1    Yamanaka, K.2    Mitani, T.3    Niki, H.4    Ogura, T.5    Hiraga, S.6
  • 45
    • 51649119387 scopus 로고    scopus 로고
    • Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments
    • Laederach, A., Das, R., Vicens, Q., Pearlman, S.M., Brenowitz, M., Herschlag, D. Altman, R.B. (2008) Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments. Nat Protocols 3 : 1395 1401.
    • (2008) Nat Protocols , vol.3 , pp. 1395-1401
    • Laederach, A.1    Das, R.2    Vicens, Q.3    Pearlman, S.M.4    Brenowitz, M.5    Herschlag, D.6    Altman, R.B.7
  • 46
    • 0036274640 scopus 로고    scopus 로고
    • RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli
    • DOI 10.1046/j.1365-2958.2002.02848.x
    • Lee, K., Bernstein, J.A. Cohen, S.N. (2002) RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol Microbiol 43 : 1445 1456. (Pubitemid 34595537)
    • (2002) Molecular Microbiology , vol.43 , Issue.6 , pp. 1445-1456
    • Lee, K.1    Bernstein, J.A.2    Cohen, S.N.3
  • 47
    • 0036210631 scopus 로고    scopus 로고
    • RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors
    • DOI 10.1017/S1355838202014929
    • Li, Z.W. Deutscher, M.P. (2002) RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors. RNA 8 : 97 109. (Pubitemid 34260169)
    • (2002) RNA , vol.8 , Issue.1 , pp. 97-109
    • Li, Z.1    Deutscher, M.P.2
  • 48
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA
    • DOI 10.1093/emboj/18.10.2878
    • Li, Z.W., Pandit, S. Deutscher, M.P. (1999) RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA. EMBO J 18 : 2878 2885. (Pubitemid 29233959)
    • (1999) EMBO Journal , vol.18 , Issue.10 , pp. 2878-2885
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 49
    • 0025814610 scopus 로고
    • The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo
    • Lin-Chao, S. Cohen, S.N. (1991) The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo. Cell 65 : 1233 1242. (Pubitemid 121001336)
    • (1991) Cell , vol.65 , Issue.7 , pp. 1233-1242
    • Lin-Chao, S.1    Cohen, S.N.2
  • 50
    • 0028276973 scopus 로고
    • Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid
    • Lin-Chao, S., Wong, T.T., McDowall, K.J. Cohen, S.N. (1994) Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNAI encoded by the pBR322 plasmid. J Biol Chem 269 : 10797 10803. (Pubitemid 24198291)
    • (1994) Journal of Biological Chemistry , vol.269 , Issue.14 , pp. 10797-10803
    • Lin-Chao, S.1    Wong, T.-T.2    McDowall, K.J.3    Cohen, S.N.4
  • 54
    • 0027523698 scopus 로고
    • Thermodynamics of G-tetraplex formation by telomeric DNAs
    • DOI 10.1021/bi00053a027
    • Lu, M., Guo, Q. Kallenbach, N.R. (1993) Thermodynamics of G-tetraplex formation by telomeric DNAs. Biochemistry 32 : 598 601. (Pubitemid 23034899)
    • (1993) Biochemistry , vol.32 , Issue.2 , pp. 598-601
    • Lu, M.1    Guo, Q.2    Kallenbach, N.R.3
  • 55
    • 0001191811 scopus 로고    scopus 로고
    • Multiple binding modes of substrate to the catalytic RNA subunit of RNase P from Escherichia coli
    • DOI 10.1017/S1355838299990416
    • Lundberg, U. Altman, S. (1995) Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. RNA 1 : 327 334. (Pubitemid 29365332)
    • (1999) RNA , vol.5 , Issue.8 , pp. 1021-1033
    • Lundberg, U.1    Altman, S.2
  • 56
    • 0029962989 scopus 로고    scopus 로고
    • The N-terminal domain of the rne gene product has RNase e activity and is non-overlapping with the arginine-rich RNA-binding site
    • McDowall, K.J. Cohen, S.N. (1996) The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site. J Mol Biol 255 : 349 355.
    • (1996) J Mol Biol , vol.255 , pp. 349-355
    • McDowall, K.J.1    Cohen, S.N.2
  • 57
    • 0027273009 scopus 로고
    • The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus
    • McDowall, K.J., Hernandez, R.G., Lin-Chao, S. Cohen, S.N. (1993) The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus. J Bacteriol 175 : 4245 4249. (Pubitemid 23206921)
    • (1993) Journal of Bacteriology , vol.175 , Issue.13 , pp. 4245-4249
    • McDowall, K.J.1    Hernandez, R.G.2    Lin-Chao, S.3    Cohen, S.N.4
  • 58
    • 0028341449 scopus 로고
    • A+U content rather than a particular nucleotide order determines the specificity of RNase e cleavage
    • McDowall, K.J., Lin Chao, S. Cohen, S.N. (1994) A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. J Biol Chem 269 : 10790 10796.
    • (1994) J Biol Chem , vol.269 , pp. 10790-10796
    • McDowall, K.J.1    Lin Chao, S.2    Cohen, S.N.3
  • 59
    • 0028987956 scopus 로고
    • Site-specific RNase e cleavage of oligonucleotides and inhibition by stem-loops
    • McDowall, K.J., Kaberdin, V.R., Wu, S.W., Cohen, S.N. Lin-Chao, S. (1995) Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops. Nature 374 : 287 290.
    • (1995) Nature , vol.374 , pp. 287-290
    • McDowall, K.J.1    Kaberdin, V.R.2    Wu, S.W.3    Cohen, S.N.4    Lin-Chao, S.5
  • 60
    • 0032531768 scopus 로고    scopus 로고
    • Ribonuclease e is a 5′-end-dependent endonuclease
    • Mackie, G.A. (1998) Ribonuclease E is a 5′-end-dependent endonuclease. Nature 395 : 720 723.
    • (1998) Nature , vol.395 , pp. 720-723
    • MacKie, G.A.1
  • 61
    • 0034682733 scopus 로고    scopus 로고
    • Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase e action in vivo
    • Mackie, G.A. (2000) Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo. J Biol Chem 275 : 25069 25072.
    • (2000) J Biol Chem , vol.275 , pp. 25069-25072
    • MacKie, G.A.1
  • 62
    • 33745838984 scopus 로고    scopus 로고
    • The RNA degradosome: Life in the fast lane of adaptive molecular evolution
    • DOI 10.1016/j.tibs.2006.05.005, PII S0968000406001393
    • Marcaida, M.J., DePristo, M.A., Chandran, V., Carpousis, A.J. Luisi, B.F. (2006) The RNA degradosome: life in the fast lane of adaptive molecular evolution. Trends Biochem Sci 31 : 359 365. (Pubitemid 44038917)
    • (2006) Trends in Biochemical Sciences , vol.31 , Issue.7 , pp. 359-365
    • Marcaida, M.J.1    DePristo, M.A.2    Chandran, V.3    Carpousis, A.J.4    Luisi, B.F.5
  • 64
    • 16244412610 scopus 로고    scopus 로고
    • RNA structure analysis at single nucleotide resolution by Selective 2′-Hydroxyl Acylation and Primer Extension (SHAPE)
    • DOI 10.1021/ja043822v
    • Merino, E.J., Wilkinson, K.A., Coughlan, J.L. Weeks, K.M. (2005) RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc 127 : 4223 4231. (Pubitemid 40463047)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.12 , pp. 4223-4231
    • Merino, E.J.1    Wilkinson, K.A.2    Coughlan, J.L.3    Weeks, K.M.4
  • 65
    • 0025826583 scopus 로고
    • Location of the RNA-processing enzymes RNase III, RNase e and RNase P in the Escherichia coli cell
    • Miczak, A., Srivastava, R.A.K. Apirion, D. (1991) Location of the RNA processing enzymes RNase III, RNase E and RNase P in the Escherichia coli cell. Mol Microbiol 5 : 1801 1810. (Pubitemid 21896211)
    • (1991) Molecular Microbiology , vol.5 , Issue.7 , pp. 1801-1810
    • Miczak, A.1    Srivastava, R.A.K.2    Apirion, D.3
  • 66
    • 0018582283 scopus 로고
    • RNase E, an RNA processing enzyme from Escherichia coli
    • Misra, T.K. Apirion, D. (1979) RNase E, an RNA processing enzyme from Escherichia coli. J Biol Chem 254 : 1154 1159. (Pubitemid 10163296)
    • (1979) Journal of Biological Chemistry , vol.254 , Issue.21 , pp. 11154-11159
    • Misra, T.K.1    Apirion, D.2
  • 67
    • 24944507588 scopus 로고    scopus 로고
    • RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
    • DOI 10.1101/gad.1330405
    • Morita, T., Maki, K. Aiba, H. (2005) RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev 19 : 2176 2186. (Pubitemid 41330319)
    • (2005) Genes and Development , vol.19 , Issue.18 , pp. 2176-2186
    • Morita, T.1    Maki, K.2    Aiba, H.3
  • 69
    • 0018791193 scopus 로고
    • Conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA
    • Ono, M. Kuwano, M. (1979) Conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA. J Mol Biol 129 : 343 357.
    • (1979) J Mol Biol , vol.129 , pp. 343-357
    • Ono, M.1    Kuwano, M.2
  • 70
    • 0036571060 scopus 로고    scopus 로고
    • Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli
    • DOI 10.1101/gad.983502
    • Ow, M.C. Kushner, S.R. (2002) Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes Dev 16 : 1102 1115. (Pubitemid 34507199)
    • (2002) Genes and Development , vol.16 , Issue.9 , pp. 1102-1115
    • Ow, M.C.1    Kushner, S.R.2
  • 71
    • 37549027538 scopus 로고    scopus 로고
    • Fundamentals of quadruplex structures
    • Neidle, S. Balasubramanian, S. (eds)
    • Parkinson, G.N. (2006) Fundamentals of quadruplex structures. In Quadruplex Nucleic Acids. Neidle, S. Balasubramanian, S. (eds).
    • (2006) Quadruplex Nucleic Acids.
    • Parkinson, G.N.1
  • 72
    • 0242666860 scopus 로고    scopus 로고
    • Determination of the Catalytic Parameters of the N-terminal Half of Escherichia coli Ribonuclease E and the Identification of Critical Functional Groups in RNA Substrates
    • DOI 10.1074/jbc.M306760200
    • Redko, Y., Tock, M.R., Adams, C.J., Kaberdin, V.R., Grasby, J.A. McDowall, K.J. (2003) Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates. J Biol Chem 278 : 44001 44008. (Pubitemid 37377139)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.45 , pp. 44001-44008
    • Redko, Y.1    Tock, M.R.2    Adams, C.J.3    Kaberdin, V.R.4    Grasby, J.A.5    McDowall, K.J.6
  • 73
    • 0242400018 scopus 로고    scopus 로고
    • Degradation of mRNA in bacteria: Emergence of ubiquitous features
    • DOI 10.1002/(SICI)1521-1878(200003)22:3<235::AID-BIES5>3.0.CO;2-2
    • Regnier, P. Arraiano, C.M. (2000) Degradation of mRNA in bacteria: emergence of ubiquitous features. Bioessays 22 : 235 244. (Pubitemid 30144416)
    • (2000) BioEssays , vol.22 , Issue.3 , pp. 235-244
    • Regnier, P.1    Arraiano, C.M.2
  • 74
    • 0025973574 scopus 로고
    • Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure
    • Regnier, P. Hajnsdorf, E. (1991) Decay of messenger RNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure. J Mol Biol 217 : 283 292. (Pubitemid 121003940)
    • (1991) Journal of Molecular Biology , vol.217 , Issue.2 , pp. 283-292
    • Regnier, P.1    Hajnsdorf, E.2
  • 75
    • 58149375464 scopus 로고    scopus 로고
    • Small regulatory non-coding RNAs in bacteria: Physiology and mechanistic aspects
    • Repoila, F. Darfeuille, F. (2009) Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects. Biol Cell 101 : 117 131.
    • (2009) Biol Cell , vol.101 , pp. 117-131
    • Repoila, F.1    Darfeuille, F.2
  • 76
    • 34548098683 scopus 로고    scopus 로고
    • The end defines the means in bacterial mRNA decay
    • Schoenberg, D.R. (2007) The end defines the means in bacterial mRNA decay. Nat Chem Biol 3 : 535 536.
    • (2007) Nat Chem Biol , vol.3 , pp. 535-536
    • Schoenberg, D.R.1
  • 77
    • 64149115902 scopus 로고    scopus 로고
    • RNase e autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5′ untranslated region
    • Schuck, A., Diwa, A. Belasco, J.G. (2009) RNase E autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5′ untranslated region. Mol Microbiol 72 : 470 478.
    • (2009) Mol Microbiol , vol.72 , pp. 470-478
    • Schuck, A.1    Diwa, A.2    Belasco, J.G.3
  • 78
    • 0028840292 scopus 로고
    • Evidence for an RNA binding region in the Escherichia coli processing endoribonuclease RNase e
    • Taraseviciene, L., Bjork, G.R. Uhlin, B.E. (1995) Evidence for an RNA binding region in the Escherichia coli processing endoribonuclease RNase E. J Biol Chem 270 : 26391 26398.
    • (1995) J Biol Chem , vol.270 , pp. 26391-26398
    • Taraseviciene, L.1    Bjork, G.R.2    Uhlin, B.E.3
  • 79
    • 0034708447 scopus 로고    scopus 로고
    • The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'- end-dependent ribonuclease that has context-dependent broad sequence specificity
    • DOI 10.1074/jbc.275.12.8726
    • Tock, M.R., Walsh, A.P., Carroll, G. McDowall, K.J. (2000) The CafA protein required for the 5′-maturation of 16S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity. J Biol Chem 275 : 8726 8732. (Pubitemid 30180225)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.12 , pp. 8726-8732
    • Tock, M.R.1    Walsh, A.P.2    Carroll, G.3    McDowall, K.J.4
  • 80
    • 0022336784 scopus 로고
    • Processing enzyme ribonuclease E specifically cleaves RNA I. An inhibitor of primer formation in plasmid DNA synthesis
    • DOI 10.1016/0022-2836(85)90056-7
    • Tomcsanyi, T. Apirion, D. (1985) Processing enzyme ribonuclease E specifically cleaves RNAI: an inhibitor of primer formation in plasmid DNA synthesis. J Mol Biol 185 : 713 720. (Pubitemid 16154331)
    • (1985) Journal of Molecular Biology , vol.185 , Issue.4 , pp. 713-720
    • Tomcsanyi, T.1    Apirion, D.2
  • 81
    • 0033532514 scopus 로고    scopus 로고
    • Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA
    • DOI 10.1006/bbrc.1999.0806
    • Wachi, M., Umitsuki, G., Shimizu, M., Takada, A. Nagai, K. (1999) Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5′ end of 16S rRNA. Biochem Biophys Res Commun 259 : 483 488. (Pubitemid 29281257)
    • (1999) Biochemical and Biophysical Research Communications , vol.259 , Issue.2 , pp. 483-488
    • Wachi, M.1    Umitsuki, G.2    Shimizu, M.3    Takada, A.4    Nagai, K.5
  • 82
    • 0035931008 scopus 로고    scopus 로고
    • A novel RNase G mutant that is defective in degradation of adhE mRNA but proficient in the processing of 16S rRNA precursor
    • DOI 10.1006/bbrc.2001.6115
    • Wachi, M., Kaga, N., Umitsuki, G., Clark, D.P. Nagai, K. (2001) A novel RNase G mutant that is defective in degradation of adhE mRNA but proficient in the processing of 16S rRNA precursor. Biochem Biophys Res Commun 289 : 1301 1306. (Pubitemid 34076334)
    • (2001) Biochemical and Biophysical Research Communications , vol.289 , Issue.5 , pp. 1301-1306
    • Wachi, M.1    Kaga, N.2    Umitsuki, G.3    Clark, D.P.4    Nagai, K.5
  • 84
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters, L. S. Storz, G. (2009) Regulatory RNAs in bacteria. Cell 136 : 615 628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 85
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • Wilkinson, K.A., Merino, E.J. Weeks, K.M. (2006) Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1 : 1610 1616.
    • (2006) Nat Protoc , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 86
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31 : 3406 3415. (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


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