메뉴 건너뛰기




Volumn 451, Issue 7176, 2008, Pages 355-358

The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; MESSENGER RNA; RPPH ENZYME; UNCLASSIFIED DRUG;

EID: 38349117689     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature06475     Document Type: Article
Times cited : (346)

References (31)
  • 1
    • 34250875706 scopus 로고    scopus 로고
    • Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal
    • Celesnik, H., Deana, A. & Belasco, J. G. Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal. Mol. Cell 27, 79-90 (2007).
    • (2007) Mol. Cell , vol.27 , pp. 79-90
    • Celesnik, H.1    Deana, A.2    Belasco, J.G.3
  • 2
    • 0032531768 scopus 로고    scopus 로고
    • E is a 5′-end-dependent endonuclease
    • Mackie, G. A. Ribonuclease E is a 5′-end-dependent endonuclease. Nature 395, 720-723 (1998).
    • (1998) Nature , vol.395 , pp. 720-723
    • Mackie, G.1    Ribonuclease, A.2
  • 3
    • 3042645502 scopus 로고    scopus 로고
    • Catalytic activation of multimeric RNase E and RNase G by 5′-monophosphorylated RNA
    • Jiang, X. & Belasco, J. G. Catalytic activation of multimeric RNase E and RNase G by 5′-monophosphorylated RNA. Proc. Natl Acad. Sci. USA 101, 9211-9216 (2004).
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 9211-9216
    • Jiang, X.1    Belasco, J.G.2
  • 4
    • 0026602761 scopus 로고    scopus 로고
    • Emory, S. A., Bouvet, P. & Belasco, J. G. A 5′-terminal stem-loop structure can stabilize mRNA in Escherichia coli. Genes Dev. 6, 135-148 (1992).
    • Emory, S. A., Bouvet, P. & Belasco, J. G. A 5′-terminal stem-loop structure can stabilize mRNA in Escherichia coli. Genes Dev. 6, 135-148 (1992).
  • 5
    • 0026492668 scopus 로고
    • Control of RNase E-mediated RNA degradation by 5′-terminal base pairing in E. coli
    • Bouvet, P. & Belasco, J. G. Control of RNase E-mediated RNA degradation by 5′-terminal base pairing in E. coli. Nature 360, 488-491 (1992).
    • (1992) Nature , vol.360 , pp. 488-491
    • Bouvet, P.1    Belasco, J.G.2
  • 6
    • 0033038518 scopus 로고    scopus 로고
    • Importance of a 5′ stem-loop for longevity of papA mRNA in Escherichia coli
    • Bricker, A. L. & Belasco, J. G. Importance of a 5′ stem-loop for longevity of papA mRNA in Escherichia coli. J. Bacteriol. 181, 3587-3590 (1999).
    • (1999) J. Bacteriol , vol.181 , pp. 3587-3590
    • Bricker, A.L.1    Belasco, J.G.2
  • 7
    • 0034682733 scopus 로고    scopus 로고
    • Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo
    • Mackie, G. A. Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo. J. Biol. Chem. 275, 25069-25072 (2000).
    • (2000) J. Biol. Chem , vol.275 , pp. 25069-25072
    • Mackie, G.A.1
  • 8
    • 0037221712 scopus 로고    scopus 로고
    • Ectopic RNase E sites promote bypass of 5′-end-dependent mRNA decay in Escherichia coli
    • Baker, K. E. & Mackie, G. A. Ectopic RNase E sites promote bypass of 5′-end-dependent mRNA decay in Escherichia coli. Mol. Microbiol. 47, 75-88 (2003).
    • (2003) Mol. Microbiol , vol.47 , pp. 75-88
    • Baker, K.E.1    Mackie, G.A.2
  • 9
    • 30744470374 scopus 로고    scopus 로고
    • The Nudix hydrolase superfamily
    • McLennan, A. G. The Nudix hydrolase superfamily. Cell. Mol. Life Sci. 63, 123-143 (2006).
    • (2006) Cell. Mol. Life Sci , vol.63 , pp. 123-143
    • McLennan, A.G.1
  • 10
    • 9744224380 scopus 로고    scopus 로고
    • Structures and mechanisms of Nudix hydrolases
    • Mildvan, A. S. et al. Structures and mechanisms of Nudix hydrolases. Arch. Biochem. Biophys. 433, 129-143 (2005).
    • (2005) Arch. Biochem. Biophys , vol.433 , pp. 129-143
    • Mildvan, A.S.1
  • 11
    • 0021112147 scopus 로고
    • Tandem promoters in the gene for ribosomal protein S20
    • Mackie, G. A. & Parsons, G. D. Tandem promoters in the gene for ribosomal protein S20. J. Biol. Chem. 258, 7840-7846 (1983).
    • (1983) J. Biol. Chem , vol.258 , pp. 7840-7846
    • Mackie, G.A.1    Parsons, G.D.2
  • 12
    • 0025796969 scopus 로고
    • Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro
    • Mackie, G. Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro. J. Bacteriol. 173, 2488-2497 (1991).
    • (1991) J. Bacteriol , vol.173 , pp. 2488-2497
    • Mackie, G.1
  • 13
    • 0026557264 scopus 로고
    • Secondary structure of the mRNA for ribosomal protein S20. Implications for cleavage by ribonuclease E
    • Mackie, G. A. Secondary structure of the mRNA for ribosomal protein S20. Implications for cleavage by ribonuclease E. J. Biol. Chem. 267, 1054-1061 (1992).
    • (1992) J. Biol. Chem , vol.267 , pp. 1054-1061
    • Mackie, G.A.1
  • 14
    • 0042665928 scopus 로고    scopus 로고
    • RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E
    • Ow, M. C., Perwez, T. & Kushner, S. R. RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E. Mol. Microbiol. 49, 607-622 (2003).
    • (2003) Mol. Microbiol , vol.49 , pp. 607-622
    • Ow, M.C.1    Perwez, T.2    Kushner, S.R.3
  • 15
    • 0034708447 scopus 로고    scopus 로고
    • The CafA protein required for the 5′-maturation of 16 S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity
    • Tock, M. R., Walsh, A. P., Carroll, G. & McDowall, K. J. The CafA protein required for the 5′-maturation of 16 S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity. J. Biol. Chem. 275, 8726-8732 (2000).
    • (2000) J. Biol. Chem , vol.275 , pp. 8726-8732
    • Tock, M.R.1    Walsh, A.P.2    Carroll, G.3    McDowall, K.J.4
  • 16
    • 0034005317 scopus 로고    scopus 로고
    • Regions of RNase E important for 5′-end-dependent RNA cleavage and autoregulated synthesis
    • Jiang, X., Diwa, A. & Belasco, J. G. Regions of RNase E important for 5′-end-dependent RNA cleavage and autoregulated synthesis. J. Bacteriol. 182, 2468-2475 (2000).
    • (2000) J. Bacteriol , vol.182 , pp. 2468-2475
    • Jiang, X.1    Diwa, A.2    Belasco, J.G.3
  • 17
    • 0036274640 scopus 로고    scopus 로고
    • RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli
    • Lee, K., Bernstein, J. A. & Cohen, S. N. RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol. Microbiol. 43, 1445-1456 (2002).
    • (2002) Mol. Microbiol , vol.43 , pp. 1445-1456
    • Lee, K.1    Bernstein, J.A.2    Cohen, S.N.3
  • 18
    • 0034612295 scopus 로고    scopus 로고
    • Unpaired terminal nucleotides and 5′ monophosphorylation govern 3′ polyadenylation by Escherichia coli poly(A) polymerase I
    • Feng, Y. & Cohen, S. N. Unpaired terminal nucleotides and 5′ monophosphorylation govern 3′ polyadenylation by Escherichia coli poly(A) polymerase I. Proc. Natl Acad. Sci. USA 97, 6415-6420 (2000).
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 6415-6420
    • Feng, Y.1    Cohen, S.N.2
  • 19
    • 0028953917 scopus 로고
    • Characterization of a two-gene locus from Bartonella bacilliformis associated with the ability to invade human erythrocytes
    • Mitchell, S. J. & Minnick, M. F. Characterization of a two-gene locus from Bartonella bacilliformis associated with the ability to invade human erythrocytes. Infect. Immun. 63, 1552-1562 (1995).
    • (1995) Infect. Immun , vol.63 , pp. 1552-1562
    • Mitchell, S.J.1    Minnick, M.F.2
  • 20
    • 0001383232 scopus 로고    scopus 로고
    • Identification of Escherichia coli K1 genes contributing to human brain microvascular endothelial cell invasion by differential fluorescence induction
    • Badger, J. L., Wass, C. A. & Kim, K. S. Identification of Escherichia coli K1 genes contributing to human brain microvascular endothelial cell invasion by differential fluorescence induction. Mol. Microbiol. 36, 174-182 (2000).
    • (2000) Mol. Microbiol , vol.36 , pp. 174-182
    • Badger, J.L.1    Wass, C.A.2    Kim, K.S.3
  • 21
    • 0042357538 scopus 로고    scopus 로고
    • Regulation of dinucleoside polyphosphate pools by the YgdP and ApaH hydrolases is essential for the ability of Salmonella enterica serovar typhimurium to invade cultured mammalian cells
    • Ismail, T. M., Hart, C. A. & McLennan, A. G. Regulation of dinucleoside polyphosphate pools by the YgdP and ApaH hydrolases is essential for the ability of Salmonella enterica serovar typhimurium to invade cultured mammalian cells. J. Biol. Chem. 278, 32602-32607 (2003).
    • (2003) J. Biol. Chem , vol.278 , pp. 32602-32607
    • Ismail, T.M.1    Hart, C.A.2    McLennan, A.G.3
  • 22
    • 25444477515 scopus 로고    scopus 로고
    • Legionella pneumophila NudA Is a Nudix hydrolase and virulence factor
    • Edelstein, P. H. et al. Legionella pneumophila NudA Is a Nudix hydrolase and virulence factor. Infect. Immun. 73, 6567-6576 (2005).
    • (2005) Infect. Immun , vol.73 , pp. 6567-6576
    • Edelstein, P.H.1
  • 23
    • 0035851109 scopus 로고    scopus 로고
    • The gene ygdP, associatedwith the invasiveness of Escherichia coli K1, designates a Nudix hydrolase, Orf176, active on adenosine (5′)-pentaphospho-(5′)-adenosine (Ap5A)
    • Bessman, M. J. et al. The gene ygdP, associatedwith the invasiveness of Escherichia coli K1, designates a Nudix hydrolase, Orf176, active on adenosine (5′)-pentaphospho-(5′)-adenosine (Ap5A). J. Biol. Chem. 276, 37834-37838 (2001).
    • (2001) J. Biol. Chem , vol.276 , pp. 37834-37838
    • Bessman, M.J.1
  • 24
    • 0028202495 scopus 로고
    • Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript
    • Muhlrad, D., Decker, C. J. & Parker, R. Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript. Genes Dev. 8, 855-866 (1994).
    • (1994) Genes Dev , vol.8 , pp. 855-866
    • Muhlrad, D.1    Decker, C.J.2    Parker, R.3
  • 25
    • 0033214061 scopus 로고    scopus 로고
    • The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
    • Dunckley, T. & Parker, R. The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif. EMBO J. 18, 5411-5422 (1999).
    • (1999) EMBO J , vol.18 , pp. 5411-5422
    • Dunckley, T.1    Parker, R.2
  • 27
    • 1342269713 scopus 로고    scopus 로고
    • Superior 5′ homogeneity of RNA from ATP-initiated transcription under the T7 φ2.5 promoter
    • Coleman, T. M., Wang, G. & Huang, F. Superior 5′ homogeneity of RNA from ATP-initiated transcription under the T7 φ2.5 promoter. Nucleic Acids Res. 32, e14 (2004).
    • (2004) Nucleic Acids Res , vol.32
    • Coleman, T.M.1    Wang, G.2    Huang, F.3
  • 28
    • 31544450286 scopus 로고    scopus 로고
    • Baba, T. et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008 (2006).
    • Baba, T. et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008 (2006).
  • 29
    • 0031951386 scopus 로고    scopus 로고
    • mRNA stabilization by the ompA 5′ untranslated region: Two protective elements hinder distinct pathways for mRNA degradation
    • Arnold, T. E., Yu, J. & Belasco, J. G. mRNA stabilization by the ompA 5′ untranslated region: two protective elements hinder distinct pathways for mRNA degradation. RNA 4, 319-330 (1998).
    • (1998) RNA , vol.4 , pp. 319-330
    • Arnold, T.E.1    Yu, J.2    Belasco, J.G.3
  • 30
    • 0025312772 scopus 로고
    • The ompA 5′ untranslated RNA segment functions in Escherichia coli as a growth-rate-regulated mRNA stabilizer whose activity is unrelated to translational efficiency
    • Emory, S. A. & Belasco, J. G. The ompA 5′ untranslated RNA segment functions in Escherichia coli as a growth-rate-regulated mRNA stabilizer whose activity is unrelated to translational efficiency. J. Bacteriol. 172, 4472-4481 (1990).
    • (1990) J. Bacteriol , vol.172 , pp. 4472-4481
    • Emory, S.A.1    Belasco, J.G.2
  • 31
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A. & Wanner, B. L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. USA 97, 6640-6645 (2000).
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.