메뉴 건너뛰기




Volumn 35, Issue 13, 2007, Pages 4464-4473

Processing of Bacillus subtilis small cytoplasmic RNA: Evidence for an additional endonuclease cleavage site

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; BACTERIAL RNA; ENDONUCLEASE; EXORIBONUCLEASE; RIBONUCLEASE; RIBONUCLEASE III; RIBONUCLEASE J1; RIBONUCLEASE PH; SMALL CYTOPLASMIC RNA; UNCLASSIFIED DRUG; RNA PRECURSOR;

EID: 34547842522     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm460     Document Type: Article
Times cited : (38)

References (29)
  • 1
    • 32644435694 scopus 로고    scopus 로고
    • Degradation of RNA in bacteria: Comparison of mRNA and stable RNA
    • Deutscher,M.P. (2006) Degradation of RNA in bacteria: Comparison of mRNA and stable RNA. Nucleic Acids Res., 34, 659-666.
    • (2006) Nucleic Acids Res , vol.34 , pp. 659-666
    • Deutscher, M.P.1
  • 2
    • 0016249196 scopus 로고
    • In vitro maturation of precursors of 5S ribosomal RNA from Bacillus subtilis
    • Sogin,M.L. and Pace,N.R. (1974) In vitro maturation of precursors of 5S ribosomal RNA from Bacillus subtilis. Nature, 252, 598-600.
    • (1974) Nature , vol.252 , pp. 598-600
    • Sogin, M.L.1    Pace, N.R.2
  • 3
    • 0019128225 scopus 로고
    • RNase P of Bacillus subtilis has a RNA component
    • Gardiner,K. and Pace,N.R. (1980) RNase P of Bacillus subtilis has a RNA component. J. Biol. Chem., 255, 7507-7509.
    • (1980) J. Biol. Chem , vol.255 , pp. 7507-7509
    • Gardiner, K.1    Pace, N.R.2
  • 4
    • 0034533785 scopus 로고    scopus 로고
    • Endoribonuclease RNase III is essential in Bacillus subtilis
    • Herskovitz,M.A. and Bechhofer,D.H. (2000) Endoribonuclease RNase III is essential in Bacillus subtilis. Mol. Microbiol., 38, 1027-1033.
    • (2000) Mol. Microbiol , vol.38 , pp. 1027-1033
    • Herskovitz, M.A.1    Bechhofer, D.H.2
  • 5
    • 0043239333 scopus 로고    scopus 로고
    • Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis
    • Pellegrini,O., Nezzar,J., Marchfelder,A., Putzer,H. and Condon,C. (2003) Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis. EMBO J., 22, 4534-4543.
    • (2003) EMBO J , vol.22 , pp. 4534-4543
    • Pellegrini, O.1    Nezzar, J.2    Marchfelder, A.3    Putzer, H.4    Condon, C.5
  • 7
    • 0030576503 scopus 로고    scopus 로고
    • Maturation pathways for E. coli tRNA precursors: A random multienzyme process in vivo
    • Li,Z. and Deutscher,M.P. (1996) Maturation pathways for E. coli tRNA precursors: A random multienzyme process in vivo. Cell, 86 503-512.
    • (1996) Cell , vol.86 , pp. 503-512
    • Li, Z.1    Deutscher, M.P.2
  • 8
    • 16844379766 scopus 로고    scopus 로고
    • Participation of 3′-to-5′ exoribonucleases in the turnover of Bacillus subtilis mRNA
    • Oussenko,I.A., Abe,T., Ujiie,H., Muto,A. and Bechhofer,D.H. (2005) Participation of 3′-to-5′ exoribonucleases in the turnover of Bacillus subtilis mRNA. J. Bacteriol., 187, 2758-2767.
    • (2005) J. Bacteriol , vol.187 , pp. 2758-2767
    • Oussenko, I.A.1    Abe, T.2    Ujiie, H.3    Muto, A.4    Bechhofer, D.H.5
  • 9
    • 21244498581 scopus 로고    scopus 로고
    • Ribonuclease PH plays a major role in the exonucleolytic maturation of CCA-containing tRNA precursors in Bacillus subtilis
    • Wen,T., Oussenko,I.A., Pellegrini,O., Bechhofer,D.H. and Condon,C. (2005) Ribonuclease PH plays a major role in the exonucleolytic maturation of CCA-containing tRNA precursors in Bacillus subtilis. Nucleic Acids Res., 33, 3636-3643.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3636-3643
    • Wen, T.1    Oussenko, I.A.2    Pellegrini, O.3    Bechhofer, D.H.4    Condon, C.5
  • 10
    • 85041115207 scopus 로고    scopus 로고
    • New prospects in studying the bacterial signal recognition particle pathway
    • Herskovits,A.A., Bochkareva,E.S. and Bibi,E. (2000) New prospects in studying the bacterial signal recognition particle pathway. Mol. Microbiol., 38, 927-939.
    • (2000) Mol. Microbiol , vol.38 , pp. 927-939
    • Herskovits, A.A.1    Bochkareva, E.S.2    Bibi, E.3
  • 11
    • 0017090899 scopus 로고
    • Nucleotide sequence and in vitro processing of a precursor molecule to Escherichia coli 4.5S RNA
    • Bothwell,A.L.M., Garber,R.L. and Altman,S. (1976) Nucleotide sequence and in vitro processing of a precursor molecule to Escherichia coli 4.5S RNA. J. Biol. Chem., 251, 7709-7716.
    • (1976) J. Biol. Chem , vol.251 , pp. 7709-7716
    • Bothwell, A.L.M.1    Garber, R.L.2    Altman, S.3
  • 12
    • 0032539857 scopus 로고    scopus 로고
    • 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
    • Li,Z., Pandit,S. and Deutscher,M.P. (1998) 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc. Natl Acad. Sci. USA, 95, 2856-2861.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 2856-2861
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 13
    • 0024619222 scopus 로고
    • Transcription and processing of Bacillus subtilis small cytoplasmic RNA
    • Struck,J.C.R., Hartmann,R.K., Toschka,H.Y. and Erdmann,V.A. (1989) Transcription and processing of Bacillus subtilis small cytoplasmic RNA. Mol. Gen. Genet., 215, 478-482.
    • (1989) Mol. Gen. Genet , vol.215 , pp. 478-482
    • Struck, J.C.R.1    Hartmann, R.K.2    Toschka, H.Y.3    Erdmann, V.A.4
  • 14
    • 0032584720 scopus 로고    scopus 로고
    • Bacillus subtilis RNase III cleaves both 5′- and 3′ sites of the small cytoplasmic RNA precursor
    • Oguro,A., Kakeshita,H., Nakamura,K., Yamane,K., Wang,W. and Bechhofer,D.H. (1998) Bacillus subtilis RNase III cleaves both 5′- and 3′ sites of the small cytoplasmic RNA precursor. J. Biol. Chem., 273, 19542-19547.
    • (1998) J. Biol. Chem , vol.273 , pp. 19542-19547
    • Oguro, A.1    Kakeshita, H.2    Nakamura, K.3    Yamane, K.4    Wang, W.5    Bechhofer, D.H.6
  • 15
    • 1542297771 scopus 로고    scopus 로고
    • Recycling of a regulatory protein by degradation of the RNA to which it binds
    • Deikus,G., Babitzke,P. and Bechhofer,D.H. (2004) Recycling of a regulatory protein by degradation of the RNA to which it binds. Proc. Natl Acad. Sci. USA, 101, 2747-2751.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2747-2751
    • Deikus, G.1    Babitzke, P.2    Bechhofer, D.H.3
  • 16
    • 0032741876 scopus 로고    scopus 로고
    • Protection against 3′-to-5′ RNA decay in Bacillus subtilis
    • Farr,G.A., Oussenko,I.A. and Bechhofer,D.H. (1999) Protection against 3′-to-5′ RNA decay in Bacillus subtilis. J. Bacteriol., 181 7323-7330.
    • (1999) J. Bacteriol , vol.181 , pp. 7323-7330
    • Farr, G.A.1    Oussenko, I.A.2    Bechhofer, D.H.3
  • 17
    • 0042337276 scopus 로고    scopus 로고
    • Effect of translational signals on mRNA decay in Bacillus subtilis
    • Sharp,J.S. and Bechhofer,D.H. (2003) Effect of translational signals on mRNA decay in Bacillus subtilis. J. Bacteriol., 185, 5372-5379.
    • (2003) J. Bacteriol , vol.185 , pp. 5372-5379
    • Sharp, J.S.1    Bechhofer, D.H.2
  • 18
    • 22144484167 scopus 로고    scopus 로고
    • Effect of 5′-proximal elements on decay of a model mRNA in Bacillus subtilis
    • Sharp,J.S. and Bechhofer,D.H. (2005) Effect of 5′-proximal elements on decay of a model mRNA in Bacillus subtilis. Mol. Microbiol., 57 484-495.
    • (2005) Mol. Microbiol , vol.57 , pp. 484-495
    • Sharp, J.S.1    Bechhofer, D.H.2
  • 19
    • 0030047027 scopus 로고    scopus 로고
    • Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis
    • Luttinger,A., Hahn,J. and Dubnau,D. (1996) Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis. Mol. Microbiol., 19, 343-356.
    • (1996) Mol. Microbiol , vol.19 , pp. 343-356
    • Luttinger, A.1    Hahn, J.2    Dubnau, D.3
  • 20
    • 17844361922 scopus 로고    scopus 로고
    • Ribonucleases J1 and J2: Two novel endoribonucleases in B. subtilis with functional homology to RNase E
    • Even,S., Pellegrini,O., Zig,L., Labas,V., Vinh,J., Bréchemmier-Baey,D. and Putzer,H. (2005) Ribonucleases J1 and J2: Two novel endoribonucleases in B. subtilis with functional homology to RNase E. Nucleic Acids Res., 33, 2141-2152.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2141-2152
    • Even, S.1    Pellegrini, O.2    Zig, L.3    Labas, V.4    Vinh, J.5    Bréchemmier-Baey, D.6    Putzer, H.7
  • 21
    • 0035257090 scopus 로고    scopus 로고
    • Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: Mature 5S rRNA is dispensable for ribosome function
    • Condon,C., Brechemier-Baey,D, Beltchev,B., Grunberg-Manago,M. and Putzer,H. (2001) Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: Mature 5S rRNA is dispensable for ribosome function. RNA, 7, 242-253.
    • (2001) RNA , vol.7 , pp. 242-253
    • Condon, C.1    Brechemier-Baey, D.2    Beltchev, B.3    Grunberg-Manago, M.4    Putzer, H.5
  • 22
    • 33645512683 scopus 로고    scopus 로고
    • Wegscheid,B., Condon,C. and Hartmann,R.K. (2006) Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences. EMBO Rep., 7, 411-417.
    • Wegscheid,B., Condon,C. and Hartmann,R.K. (2006) Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences. EMBO Rep., 7, 411-417.
  • 23
    • 0031854048 scopus 로고    scopus 로고
    • PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication
    • Petit,M.-A., Dervyn,E., Rose,M., Entian,K.-D., McGovern,S., Dusko Ehrlich,S. and Bruand,C. (1998) PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication. Mol. Microbiol., 29, 261-273.
    • (1998) Mol. Microbiol , vol.29 , pp. 261-273
    • Petit, M.-A.1    Dervyn, E.2    Rose, M.3    Entian, K.-D.4    McGovern, S.5    Dusko Ehrlich, S.6    Bruand, C.7
  • 24
    • 0020464846 scopus 로고
    • Escherichia coli ribonuclease III cleavage sites
    • Robertson,H.D. (1982) Escherichia coli ribonuclease III cleavage sites. Cell, 30, 669-672.
    • (1982) Cell , vol.30 , pp. 669-672
    • Robertson, H.D.1
  • 25
    • 0037995439 scopus 로고    scopus 로고
    • Mutational analysis of an RNA internal loop as a reactivity epitope for Escherichia coli ribonuclease III substrates
    • Calin-Jagerman,I. and Nicholson,A.W. (2003) Mutational analysis of an RNA internal loop as a reactivity epitope for Escherichia coli ribonuclease III substrates. Biochemistry, 42, 5025-5034.
    • (2003) Biochemistry , vol.42 , pp. 5025-5034
    • Calin-Jagerman, I.1    Nicholson, A.W.2
  • 26
    • 0027960972 scopus 로고
    • Substrate specificity of an RNase III-like activity from Bacillus subtilis
    • Mitra,S. and Bechhofer,D.H. (1994) Substrate specificity of an RNase III-like activity from Bacillus subtilis. J. Biol. Chem., 269 31450-31456.
    • (1994) J. Biol. Chem , vol.269 , pp. 31450-31456
    • Mitra, S.1    Bechhofer, D.H.2
  • 27
    • 0028235826 scopus 로고
    • Roles of RNase E, RNase II and PNPase in the degradation of rpsO transcripts of Escherichia coli: Stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant
    • Hajnsdorf,E., Steier,O., Coscoy,L., Teysset,L. and Régnier,P. (1994) Roles of RNase E, RNase II and PNPase in the degradation of rpsO transcripts of Escherichia coli: Stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant. EMBO J., 13, 3368-3377.
    • (1994) EMBO J , vol.13 , pp. 3368-3377
    • Hajnsdorf, E.1    Steier, O.2    Coscoy, L.3    Teysset, L.4    Régnier, P.5
  • 28
    • 0028076787 scopus 로고
    • Decay of the IS10 antisense RNA by 3′ exoribonucleases: Evidence that RNase II stabilizes RNA-OUT against PNPase attack
    • Pepe,C.M., Maslesa-Galic,S. and Simons,R.W. (1994) Decay of the IS10 antisense RNA by 3′ exoribonucleases: Evidence that RNase II stabilizes RNA-OUT against PNPase attack. Mol. Microbiol., 13 1133-1142.
    • (1994) Mol. Microbiol , vol.13 , pp. 1133-1142
    • Pepe, C.M.1    Maslesa-Galic, S.2    Simons, R.W.3
  • 29
    • 0142030030 scopus 로고    scopus 로고
    • Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay
    • Mohanty,B.K. and Kushner,S.R. (2003) Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol. Microbiol., 50 645-658.
    • (2003) Mol. Microbiol , vol.50 , pp. 645-658
    • Mohanty, B.K.1    Kushner, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.