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Volumn 41, Issue 1, 2013, Pages 288-301

A minimal bacterial RNase J-based degradosome is associated with translating ribosomes

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; DEAD BOX PROTEIN; DOUBLE STRANDED RNA; RHPA HELICASE; RIBONUCLEASE; RIBONUCLEASE J; UNCLASSIFIED DRUG;

EID: 84871762875     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks945     Document Type: Article
Times cited : (42)

References (57)
  • 2
    • 79954583353 scopus 로고    scopus 로고
    • Regulated RNA stability in the Gram positives
    • Condon, C. and Bechhofer, D.H. (2011) Regulated RNA stability in the Gram positives. Curr. Opin. Microbiol., 14, 148-154.
    • (2011) Curr. Opin. Microbiol. , vol.14 , pp. 148-154
    • Condon, C.1    Bechhofer, D.H.2
  • 3
    • 17844361922 scopus 로고    scopus 로고
    • Ribonucleases J1 and J2: Two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase e
    • Even, S., Pellegrini, O., Zig, L., Labas, V., Vinh, J., Brechemmier-Baey, D. and Putzer, H. (2005) Ribonucleases J1 and J2: two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase E. Nucleic Acids Res., 33, 2141-2152.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2141-2152
    • Even, S.1    Pellegrini, O.2    Zig, L.3    Labas, V.4    Vinh, J.5    Brechemmier-Baey, D.6    Putzer, H.7
  • 4
    • 70450222923 scopus 로고    scopus 로고
    • RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
    • Shahbabian, K., Jamalli, A., Zig, L. and Putzer, H. (2009) RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J., 28, 3523-3533.
    • (2009) EMBO J. , vol.28 , pp. 3523-3533
    • Shahbabian, K.1    Jamalli, A.2    Zig, L.3    Putzer, H.4
  • 5
    • 34249101864 scopus 로고    scopus 로고
    • 5′-to-3′ exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′ stability of mRNA
    • Mathy, N., Benard, L., Pellegrini, O., Daou, R., Wen, T. and Condon, C. (2007) 5′-to-3′ exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5′ stability of mRNA. Cell, 129, 681-692.
    • (2007) Cell , vol.129 , pp. 681-692
    • Mathy, N.1    Benard, L.2    Pellegrini, O.3    Daou, R.4    Wen, T.5    Condon, C.6
  • 6
    • 80052465746 scopus 로고    scopus 로고
    • Molecular basis for the recognition and cleavage of RNA by the bifunctional 5′-3′ exo/endoribonuclease RNase J
    • Dorleans, A., Li de la Sierra-Gallay, I., Piton, J., Zig, L., Gilet, L., Putzer, H. and Condon, C. (2011) Molecular basis for the recognition and cleavage of RNA by the bifunctional 5′-3′ exo/endoribonuclease RNase J. Structure, 19, 1252-1261.
    • (2011) Structure , vol.19 , pp. 1252-1261
    • Dorleans, A.1    Li De La Sierra-Gallay, I.2    Piton, J.3    Zig, L.4    Gilet, L.5    Putzer, H.6    Condon, C.7
  • 7
    • 80052458661 scopus 로고    scopus 로고
    • Unusual, dual endo-and exonuclease activity in the degradosome explained by crystal structure analysis of RNase J1
    • Newman, J.A., Hewitt, L., Rodrigues, C., Solovyova, A., Harwood, C.R. and Lewis, R.J. (2011) Unusual, dual endo-and exonuclease activity in the degradosome explained by crystal structure analysis of RNase J1. Structure, 19, 1241-1251.
    • (2011) Structure , vol.19 , pp. 1241-1251
    • Newman, J.A.1    Hewitt, L.2    Rodrigues, C.3    Solovyova, A.4    Harwood, C.R.5    Lewis, R.J.6
  • 8
    • 35548995356 scopus 로고    scopus 로고
    • The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase e
    • Carpousis, A.J. (2007) The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E. Annu. Rev. Microbiol., 61, 71-87.
    • (2007) Annu. Rev. Microbiol. , vol.61 , pp. 71-87
    • Carpousis, A.J.1
  • 9
    • 64049090242 scopus 로고    scopus 로고
    • Killer and protective ribosomes
    • Dreyfus, M. (2009) Killer and protective ribosomes. Prog. Mol. Biol. Transl. Sci., 85, 423-466.
    • (2009) Prog. Mol. Biol. Transl. Sci. , vol.85 , pp. 423-466
    • Dreyfus, M.1
  • 10
    • 54249138245 scopus 로고    scopus 로고
    • The RNase e of Escherichia coli is a membrane-binding protein
    • Khemici, V., Poljak, L., Luisi, B.F. and Carpousis, A.J. (2008) The RNase E of Escherichia coli is a membrane-binding protein. Mol. Microbiol., 70, 799-813.
    • (2008) Mol. Microbiol. , vol.70 , pp. 799-813
    • Khemici, V.1    Poljak, L.2    Luisi, B.F.3    Carpousis, A.J.4
  • 11
    • 77955351104 scopus 로고    scopus 로고
    • The RNA degradosome in Bacillus subtilis: Identification of CshA as the major RNA helicase in the multiprotein complex
    • Lehnik-Habrink, M., Pfortner, H., Rempeters, L., Pietack, N., Herzberg, C. and Stulke, J. (2010) The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complex. Mol. Microbiol., 77, 958-971.
    • (2010) Mol. Microbiol. , vol.77 , pp. 958-971
    • Lehnik-Habrink, M.1    Pfortner, H.2    Rempeters, L.3    Pietack, N.4    Herzberg, C.5    Stulke, J.6
  • 13
    • 80053608322 scopus 로고    scopus 로고
    • Characterization of components of the Staphylococcus aureus mRNA degradosome holoenzyme-like complex
    • Roux, C.M., DeMuth, J.P. and Dunman, P.M. (2011) Characterization of components of the Staphylococcus aureus mRNA degradosome holoenzyme-like complex. J. Bacteriol., 193, 5520-5526.
    • (2011) J. Bacteriol. , vol.193 , pp. 5520-5526
    • Roux, C.M.1    Demuth, J.P.2    Dunman, P.M.3
  • 15
    • 33749645818 scopus 로고    scopus 로고
    • Functional analysis of 11 putative essential genes in Bacillus subtilis
    • Hunt, A., Rawlins, J.P., Thomaides, H.B. and Errington, J. (2006) Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology, 152, 2895-2907.
    • (2006) Microbiology , vol.152 , pp. 2895-2907
    • Hunt, A.1    Rawlins, J.P.2    Thomaides, H.B.3    Errington, J.4
  • 16
    • 33645740999 scopus 로고    scopus 로고
    • The pathogenesis of Helicobacter pylori-induced gastro-duodenal diseases
    • Atherton, J.C. (2006) The pathogenesis of Helicobacter pylori-induced gastro-duodenal diseases. Annu. Rev. Pathol., 1, 63-96.
    • (2006) Annu. Rev. Pathol. , vol.1 , pp. 63-96
    • Atherton, J.C.1
  • 18
    • 0025823864 scopus 로고
    • Essential role of urease in pathogenesis of gastritis induced by Helicobacter pylori in gnotobiotic piglets
    • Eaton, K.A., Brooks, C.L., Morgan, D.R. and Krakowka, S. (1991) Essential role of urease in pathogenesis of gastritis induced by Helicobacter pylori in gnotobiotic piglets. Infect. Immun., 59, 2470-2475.
    • (1991) Infect. Immun. , vol.59 , pp. 2470-2475
    • Eaton, K.A.1    Brooks, C.L.2    Morgan, D.R.3    Krakowka, S.4
  • 19
    • 0034039960 scopus 로고    scopus 로고
    • Bacterial ureases in infectious diseases
    • Burne, R.A. and Chen, Y.Y. (2000) Bacterial ureases in infectious diseases. Microbes Infect., 2, 533-542.
    • (2000) Microbes Infect. , vol.2 , pp. 533-542
    • Burne, R.A.1    Chen, Y.Y.2
  • 21
    • 0038781648 scopus 로고    scopus 로고
    • PH-regulated gene expression of the gastric pathogen Helicobacter pylori
    • Merrell, D.S., Goodrich, M.L., Otto, G., Tompkins, L.S. and Falkow, S. (2003) pH-regulated gene expression of the gastric pathogen Helicobacter pylori. Infect. Immun., 71, 3529-3539.
    • (2003) Infect. Immun. , vol.71 , pp. 3529-3539
    • Merrell, D.S.1    Goodrich, M.L.2    Otto, G.3    Tompkins, L.S.4    Falkow, S.5
  • 22
    • 3242881125 scopus 로고    scopus 로고
    • Responsiveness to acidity via metal ion regulators mediates virulence in the gastric pathogen Helicobacter pylori
    • Bury-Mone, S., Thiberge, J.M., Contreras, M., Maitournam, A., Labigne, A. and De Reuse, H. (2004) Responsiveness to acidity via metal ion regulators mediates virulence in the gastric pathogen Helicobacter pylori. Mol. Microbiol., 53, 623-638.
    • (2004) Mol. Microbiol. , vol.53 , pp. 623-638
    • Bury-Mone, S.1    Thiberge, J.M.2    Contreras, M.3    Maitournam, A.4    Labigne, A.5    De Reuse, H.6
  • 24
    • 0034076830 scopus 로고    scopus 로고
    • Identification of the urease operon in Helicobacter pylori and its control by mRNA decay in response to pH
    • Akada, J.K., Shirai, M., Takeuchi, H., Tsuda, M. and Nakazawa, T. (2000) Identification of the urease operon in Helicobacter pylori and its control by mRNA decay in response to pH. Mol. Microbiol., 36, 1071-1084.
    • (2000) Mol. Microbiol. , vol.36 , pp. 1071-1084
    • Akada, J.K.1    Shirai, M.2    Takeuchi, H.3    Tsuda, M.4    Nakazawa, T.5
  • 26
    • 59449109546 scopus 로고    scopus 로고
    • Genome sequence analysis of Helicobacter pylori strains associated with gastric ulceration and gastric cancer
    • McClain, M.S., Shaffer, C.L., Israel, D.A., Peek, R.M. Jr and Cover, T.L. (2009) Genome sequence analysis of Helicobacter pylori strains associated with gastric ulceration and gastric cancer. BMC Genomics, 10, 3.
    • (2009) BMC Genomics , vol.10 , pp. 3
    • McClain, M.S.1    Shaffer, C.L.2    Israel, D.A.3    Peek, Jr.R.M.4    Cover, T.L.5
  • 28
    • 27744496985 scopus 로고    scopus 로고
    • Conjugative plasmid DNA transfer in Helicobacter pylori mediated by chromosomally encoded relaxase and TraG-like proteins
    • Backert, S., Kwok, T. and Konig, W. (2005) Conjugative plasmid DNA transfer in Helicobacter pylori mediated by chromosomally encoded relaxase and TraG-like proteins. Microbiology, 151, 3493-3503.
    • (2005) Microbiology , vol.151 , pp. 3493-3503
    • Backert, S.1    Kwok, T.2    Konig, W.3
  • 29
    • 77951915330 scopus 로고    scopus 로고
    • Study of the functionality of the Helicobacter pylori transtranslation components SmpB and SsrA in an heterologous system
    • Thibonnier, M., Aubert, S., Ecobichon, C. and De Reuse, H. (2010) Study of the functionality of the Helicobacter pylori transtranslation components SmpB and SsrA in an heterologous system. BMC Microbiol., 10, 91.
    • (2010) BMC Microbiol. , vol.10 , pp. 91
    • Thibonnier, M.1    Aubert, S.2    Ecobichon, C.3    De Reuse, H.4
  • 31
    • 60649120832 scopus 로고    scopus 로고
    • Ribosomal protein L3 bound to 23S precursor rRNA stimulates its maturation by Mini-III ribonuclease
    • Redko, Y. and Condon, C. (2009) Ribosomal protein L3 bound to 23S precursor rRNA stimulates its maturation by Mini-III ribonuclease. Mol. Microbiol., 71, 1145-1154.
    • (2009) Mol. Microbiol. , vol.71 , pp. 1145-1154
    • Redko, Y.1    Condon, C.2
  • 32
    • 0033580840 scopus 로고    scopus 로고
    • Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase
    • Iost, I., Dreyfus, M. and Linder, P. (1999) Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase. J. Biol. Chem., 274, 17677-17683.
    • (1999) J. Biol. Chem. , vol.274 , pp. 17677-17683
    • Iost, I.1    Dreyfus, M.2    Linder, P.3
  • 34
    • 0034695684 scopus 로고    scopus 로고
    • A H+-gated urea channel: The link between Helicobacter pylori urease and gastric colonization
    • Weeks, D.L., Eskandari, S., Scott, D.R. and Sachs, G. (2000) A H+-gated urea channel: the link between Helicobacter pylori urease and gastric colonization. Science, 287, 482-485.
    • (2000) Science , vol.287 , pp. 482-485
    • Weeks, D.L.1    Eskandari, S.2    Scott, D.R.3    Sachs, G.4
  • 35
    • 0031661885 scopus 로고    scopus 로고
    • The Helicobacter pylori UreI protein is not involved in urease activity but is essential for bacterial survival in vivo
    • Skouloubris, S., Thiberge, J.M., Labigne, A. and De Reuse, H. (1998) The Helicobacter pylori UreI protein is not involved in urease activity but is essential for bacterial survival in vivo. Infect. Immun., 66, 4517-4521.
    • (1998) Infect. Immun. , vol.66 , pp. 4517-4521
    • Skouloubris, S.1    Thiberge, J.M.2    Labigne, A.3    De Reuse, H.4
  • 37
    • 67650147953 scopus 로고    scopus 로고
    • RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti
    • Madhugiri, R. and Evguenieva-Hackenberg, E. (2009) RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti. FEBS Lett., 583, 2339-2342.
    • (2009) FEBS Lett. , vol.583 , pp. 2339-2342
    • Madhugiri, R.1    Evguenieva-Hackenberg, E.2
  • 38
    • 82155166270 scopus 로고    scopus 로고
    • Mycobacterium smegmatis RNase J is a 5′-3′ exo-/endoribonuclease and both RNase J and RNase e are involved in ribosomal RNA maturation
    • Taverniti, V., Forti, F., Ghisotti, D. and Putzer, H. (2011) Mycobacterium smegmatis RNase J is a 5′-3′ exo-/endoribonuclease and both RNase J and RNase E are involved in ribosomal RNA maturation. Mol. Microbiol., 82, 1260-1276.
    • (2011) Mol. Microbiol. , vol.82 , pp. 1260-1276
    • Taverniti, V.1    Forti, F.2    Ghisotti, D.3    Putzer, H.4
  • 39
    • 34547211817 scopus 로고    scopus 로고
    • The long unwinding road of RNA helicases
    • Bleichert, F. and Baserga, S.J. (2007) The long unwinding road of RNA helicases. Mol. Cell, 27, 339-352.
    • (2007) Mol. Cell , vol.27 , pp. 339-352
    • Bleichert, F.1    Baserga, S.J.2
  • 40
    • 0018401697 scopus 로고
    • Fractionation of ribosomal particles from Bacillus subtilis
    • Sharrock, W.J. and Rabinowitz, J.C. (1979) Fractionation of ribosomal particles from Bacillus subtilis. Methods Enzymol., 59, 371-382.
    • (1979) Methods Enzymol. , vol.59 , pp. 371-382
    • Sharrock, W.J.1    Rabinowitz, J.C.2
  • 41
    • 0027945686 scopus 로고
    • A protein complex mediating mRNA degradation in Escherichia coli
    • Py, B., Causton, H., Mudd, E.A. and Higgins, C.F. (1994) A protein complex mediating mRNA degradation in Escherichia coli. Mol. Microbiol., 14, 717-729.
    • (1994) Mol. Microbiol. , vol.14 , pp. 717-729
    • Py, B.1    Causton, H.2    Mudd, E.A.3    Higgins, C.F.4
  • 42
    • 0028269435 scopus 로고
    • Copurification of E. coli RNAase e and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis, A.J., Van Houwe, G., Ehretsmann, C. and Krisch, H.M. (1994) Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell, 76, 889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 44
    • 17644380001 scopus 로고    scopus 로고
    • Exoribonuclease R interacts with endoribonuclease e and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W
    • Purusharth, R.I., Klein, F., Sulthana, S., Jager, S., Jagannadham, M.V., Evguenieva-Hackenberg, E., Ray, M.K. and Klug, G. (2005) Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W. J. Biol. Chem., 280, 14572-14578.
    • (2005) J. Biol. Chem. , vol.280 , pp. 14572-14578
    • Purusharth, R.I.1    Klein, F.2    Sulthana, S.3    Jager, S.4    Jagannadham, M.V.5    Evguenieva-Hackenberg, E.6    Ray, M.K.7    Klug, G.8
  • 46
    • 77957833370 scopus 로고    scopus 로고
    • Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB interaction in the gammaproteobacteria
    • Ait-Bara, S. and Carpousis, A.J. (2010) Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: conservation of the RNase E-RhlB interaction in the gammaproteobacteria. J. Bacteriol., 192, 5413-5423.
    • (2010) J. Bacteriol. , vol.192 , pp. 5413-5423
    • Ait-Bara, S.1    Carpousis, A.J.2
  • 48
    • 0032578486 scopus 로고    scopus 로고
    • The endoribonucleolytic N-terminal half of Escherichia coli RNase e is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half which is sufficient for degradosome assembly
    • Kaberdin, V.R., Miczak, A., Jakobsen, J.S., Lin-Chao, S., McDowall, K.J. and von Gabain, A. (1998) The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly. Proc. Natl Acad. Sci. USA, 95, 11637-11642.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 11637-11642
    • Kaberdin, V.R.1    Miczak, A.2    Jakobsen, J.S.3    Lin-Chao, S.4    McDowall, K.J.5    Von Gabain, A.6
  • 49
    • 0033048415 scopus 로고    scopus 로고
    • The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
    • Lopez, P.J., Marchand, I., Joyce, S.A. and Dreyfus, M. (1999) The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol. Microbiol., 33, 188-199.
    • (1999) Mol. Microbiol. , vol.33 , pp. 188-199
    • Lopez, P.J.1    Marchand, I.2    Joyce, S.A.3    Dreyfus, M.4
  • 50
    • 70249141564 scopus 로고    scopus 로고
    • Co-translational mRNA decay in Saccharomyces cerevisiae
    • Hu, W., Sweet, T.J., Chamnongpol, S., Baker, K.E. and Coller, J. (2009) Co-translational mRNA decay in Saccharomyces cerevisiae. Nature, 461, 225-229.
    • (2009) Nature , vol.461 , pp. 225-229
    • Hu, W.1    Sweet, T.J.2    Chamnongpol, S.3    Baker, K.E.4    Coller, J.5
  • 51
    • 0030614360 scopus 로고    scopus 로고
    • Requirement of the DEAD-Box protein ded1p for messenger RNA translation
    • Chuang, R.Y., Weaver, P.L., Liu, Z. and Chang, T.H. (1997) Requirement of the DEAD-Box protein ded1p for messenger RNA translation. Science, 275, 1468-1471.
    • (1997) Science , vol.275 , pp. 1468-1471
    • Chuang, R.Y.1    Weaver, P.L.2    Liu, Z.3    Chang, T.H.4
  • 53
    • 51649091711 scopus 로고    scopus 로고
    • MRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale
    • Mader, U., Zig, L., Kretschmer, J., Homuth, G. and Putzer, H. (2008) mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol. Microbiol., 70, 183-196.
    • (2008) Mol. Microbiol. , vol.70 , pp. 183-196
    • Mader, U.1    Zig, L.2    Kretschmer, J.3    Homuth, G.4    Putzer, H.5
  • 54
    • 84859229689 scopus 로고    scopus 로고
    • Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs
    • Durand, S., Gilet, L., Bessieres, P., Nicolas, P. and Condon, C. (2012) Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet., 8, e1002520.
    • (2012) PLoS Genet. , vol.8
    • Durand, S.1    Gilet, L.2    Bessieres, P.3    Nicolas, P.4    Condon, C.5
  • 55
    • 64049109526 scopus 로고    scopus 로고
    • Messenger RNA decay and maturation in Bacillus subtilis
    • Bechhofer, D.H. (2009) Messenger RNA decay and maturation in Bacillus subtilis. Prog. Mol. Biol. Transl. Sci., 85, 231-273.
    • (2009) Prog. Mol. Biol. Transl. Sci. , vol.85 , pp. 231-273
    • Bechhofer, D.H.1
  • 56
    • 62449224615 scopus 로고    scopus 로고
    • Ribosomes initiating translation of the hbs mRNA protect it from 5′-to-3′ exoribonucleolytic degradation by RNase J1
    • Daou-Chabo, R., Mathy, N., Benard, L. and Condon, C. (2009) Ribosomes initiating translation of the hbs mRNA protect it from 5′-to-3′ exoribonucleolytic degradation by RNase J1. Mol. Microbiol., 71, 1538-1550.
    • (2009) Mol. Microbiol. , vol.71 , pp. 1538-1550
    • Daou-Chabo, R.1    Mathy, N.2    Benard, L.3    Condon, C.4


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