-
1
-
-
0014323418
-
Translation of the tryptophan messenger RNA of Escherichia coli
-
Morse DE, Baker RF, Yanofsky C (1968) Translation of the tryptophan messenger RNA of Escherichia coli. Proc Natl Acad Sci USA 60(4):1428-1435.
-
(1968)
Proc Natl Acad Sci USA
, vol.60
, Issue.4
, pp. 1428-1435
-
-
Morse, D.E.1
Baker, R.F.2
Yanofsky, C.3
-
2
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters LS, Storz G (2009) Regulatory RNAs in bacteria. Cell 136(4):615-628.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
4
-
-
34547873145
-
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
-
DOI 10.1093/nar/gkm487
-
Weinberg Z, et al. (2007) Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Res 35(14):4809-4819. (Pubitemid 47250352)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.14
, pp. 4809-4819
-
-
Weinberg, Z.1
Barrick, J.E.2
Yao, Z.3
Roth, A.4
Kim, J.N.5
Gore, J.6
Wang, J.X.7
Lee, E.R.8
Block, K.F.9
Sudarsan, N.10
Neph, S.11
Tompa, M.12
Ruzzo, W.L.13
Breaker, R.R.14
-
5
-
-
78049392640
-
Identification of regulatory RNAs in Bacillus subtilis
-
Irnov I, Sharma CM, Vogel J, Winkler WC (2010) Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res 38(19):6637-6651.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.19
, pp. 6637-6651
-
-
Irnov, I.1
Sharma, C.M.2
Vogel, J.3
Winkler, W.C.4
-
6
-
-
79957458586
-
New insights into riboswitch regulation mechanisms
-
Bastet L, Dubé A, Massé E, Lafontaine DA (2011) New insights into riboswitch regulation mechanisms. Mol Microbiol 80(5):1148-1154.
-
(2011)
Mol Microbiol
, vol.80
, Issue.5
, pp. 1148-1154
-
-
Bastet, L.1
Dubé, A.2
Massé, E.3
Lafontaine, D.A.4
-
8
-
-
0345531094
-
Regulation of lysine biosynthesis and transport genes in bacteria: Yet another RNA riboswitch?
-
DOI 10.1093/nar/gkg900
-
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS (2003) Regulation of lysine biosynthesis and transport genes in bacteria: Yet another RNA riboswitch? Nucleic Acids Res 31(23):6748-6757. (Pubitemid 37508782)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.23
, pp. 6748-6757
-
-
Rodionov, D.A.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
9
-
-
0242298623
-
An mRNA structure in bacteria that controls gene expression by binding lysine
-
DOI 10.1101/gad.1140003
-
Sudarsan N, Wickiser JK, Nakamura S, Ebert MS, Breaker RR (2003) An mRNA structure in bacteria that controls gene expression by binding lysine. Genes Dev 17(21):2688-2697. (Pubitemid 37363073)
-
(2003)
Genes and Development
, vol.17
, Issue.21
, pp. 2688-2697
-
-
Sudarsan, N.1
Wickiser, J.K.2
Nakamura, S.3
Ebert, M.S.4
Breaker, R.R.5
-
10
-
-
34447528960
-
A loop-loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control
-
DOI 10.1261/rna.560307
-
Blouin S, Lafontaine DA (2007) A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control. RNA 13(8):1256-1267. (Pubitemid 47080471)
-
(2007)
RNA
, vol.13
, Issue.8
, pp. 1256-1267
-
-
Blouin, S.1
Lafontaine, D.A.2
-
11
-
-
53049094260
-
Crystal structure of the lysine riboswitch regulatory mRNA element
-
Garst AD, Héroux A, Rambo RP, Batey RT (2008) Crystal structure of the lysine riboswitch regulatory mRNA element. J Biol Chem 283(33):22347-22351.
-
(2008)
J Biol Chem
, vol.283
, Issue.33
, pp. 22347-22351
-
-
Garst, A.D.1
Héroux, A.2
Rambo, R.P.3
Batey, R.T.4
-
12
-
-
55249114833
-
Structural insights into amino acid binding and gene control by a lysine riboswitch
-
Serganov A, Huang L, Patel DJ (2008) Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature 455(7217):1263-1267.
-
(2008)
Nature
, vol.455
, Issue.7217
, pp. 1263-1267
-
-
Serganov, A.1
Huang, L.2
Patel, D.J.3
-
13
-
-
0032213061
-
Analysis of the regulatory region of the lysC gene of Escherichia coli
-
Liao HH, Hseu TH (1998) Analysis of the regulatory region of the lysC gene of Escherichia coli. FEMS Microbiol Lett 168(1):31-36.
-
(1998)
FEMS Microbiol Lett
, vol.168
, Issue.1
, pp. 31-36
-
-
Liao, H.H.1
Hseu, T.H.2
-
15
-
-
64049090242
-
Killer and protective ribosomes
-
Dreyfus M (2009) Killer and protective ribosomes. Prog Mol Biol Transl Sci 85:423-466.
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 423-466
-
-
Dreyfus, M.1
-
16
-
-
38449096224
-
Molecular basis of gene regulation by the THI-box riboswitch
-
DOI 10.1111/j.1365-2958.2007.06088.x
-
Ontiveros-Palacios N, et al. (2008) Molecular basis of gene regulation by the THI-box riboswitch. Mol Microbiol 67(4):793-803. (Pubitemid 351143686)
-
(2008)
Molecular Microbiology
, vol.67
, Issue.4
, pp. 793-803
-
-
Ontiveros-Palacios, N.1
Smith, A.M.2
Grundy, F.J.3
Soberon, M.4
Henkin, T.M.5
Miranda-Rios, J.6
-
17
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
DOI 10.1038/nature01145
-
Winkler W, Nahvi A, Breaker RR (2002) Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419(6910):952-956. (Pubitemid 35339632)
-
(2002)
Nature
, vol.419
, Issue.6910
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
18
-
-
84859475820
-
Riboswitch control of Rho-dependent transcription termination
-
Hollands K, et al. (2012) Riboswitch control of Rho-dependent transcription termination. Proc Natl Acad Sci USA 109(14):5376-5381.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.14
, pp. 5376-5381
-
-
Hollands, K.1
-
19
-
-
26844545025
-
The molecular basis for the mode of action of bicyclomycin
-
DOI 10.2174/1568005054880136
-
Kohn H, WidgerW(2005) The molecular basis for the mode of action of bicyclomycin. Curr Drug Targets Infect Disord 5(3):273-295. (Pubitemid 41460270)
-
(2005)
Current Drug Targets - Infectious Disorders
, vol.5
, Issue.3
, pp. 273-295
-
-
Kohn, H.1
Widger, W.2
-
20
-
-
0022637897
-
Autogenous regulation of the gene for transcription termination factor rho in Escherichia coli: Localization and function of its attenuators
-
Matsumoto Y, Shigesada K, Hirano M, Imai M (1986) Autogenous regulation of the gene for transcription termination factor rho in Escherichia coli: Localization and function of its attenuators. J Bacteriol 166(3):945-958. (Pubitemid 16098179)
-
(1986)
Journal of Bacteriology
, vol.166
, Issue.3
, pp. 945-958
-
-
Matsumoto, Y.1
Shigesada, K.2
Hirano, M.3
Imai, M.4
-
21
-
-
0014185013
-
The specific inhibition of the DNAdirected RNA synthesis by rifamycin
-
Hartmann G, Honikel KO, Knüsel F, Nüesch J (1967) The specific inhibition of the DNAdirected RNA synthesis by rifamycin. Biochim Biophys Acta 145(3):843-844.
-
(1967)
Biochim Biophys Acta
, vol.145
, Issue.3
, pp. 843-844
-
-
Hartmann, G.1
Honikel, K.O.2
Knüsel, F.3
Nüesch, J.4
-
22
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
DOI 10.1073/pnas.112318199
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using twocolor fl uorescent DNA microarrays. Proc Natl Acad Sci USA 99(15):9697-9702. (Pubitemid 34831110)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.15
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.-H.3
Lin-Chao, S.4
Cohen, S.N.5
-
23
-
-
0036719292
-
MRNA decay in Escherichia coli comes of age
-
discussion 4657
-
Kushner SR (2002) mRNA decay in Escherichia coli comes of age. J Bacteriol 184(17): 4658-4665, discussion 4657.
-
(2002)
J Bacteriol
, vol.184
, Issue.17
, pp. 4658-4665
-
-
Kushner, S.R.1
-
24
-
-
35548995356
-
The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E
-
Carpousis AJ (2007) The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E. Annu Rev Microbiol 61:71-87.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 71-87
-
-
Carpousis, A.J.1
-
25
-
-
0029889965
-
RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli
-
Kido M, et al. (1996) RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli. J Bacteriol 178(13):3917-3925. (Pubitemid 26227210)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.13
, pp. 3917-3925
-
-
Kido, M.1
Yamanaka, K.2
Mitani, T.3
Niki, H.4
Ogura, T.5
Hiraga, S.6
-
26
-
-
0017887243
-
A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA
-
Apirion D, Lassar AB (1978) A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA. J Biol Chem 253(5):1738-1742. (Pubitemid 8312357)
-
(1978)
Journal of Biological Chemistry
, vol.253
, Issue.5
, pp. 1738-1742
-
-
Apirion, D.1
Lassar, A.B.2
-
27
-
-
79951700321
-
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage
-
Prévost K, Desnoyers G, Jacques JF, Lavoie F, Massé E (2011) Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage. Genes Dev 25(4):385-396.
-
(2011)
Genes Dev
, vol.25
, Issue.4
, pp. 385-396
-
-
Prévost, K.1
Desnoyers, G.2
Jacques, J.F.3
Lavoie, F.4
Massé, E.5
-
29
-
-
33644792751
-
MK box is a new SAM-binding RNA for translational regulation of SAM synthetase
-
DOI 10.1038/nsmb1059, PII N1059
-
Fuchs RT, Grundy FJ, Henkin TM (2006) The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase. Nat Struct Mol Biol 13(3):226-233. (Pubitemid 43348508)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.3
, pp. 226-233
-
-
Fuchs, R.T.1
Grundy, F.J.2
Henkin, T.M.3
-
32
-
-
27644482393
-
Lost in translation: The influence of ribosomes on bacterial mRNA decay
-
DOI 10.1101/gad.1348805
-
Deana A, Belasco JG (2005) Lost in translation: The influence of ribosomes on bacterial mRNA decay. Genes Dev 19(21):2526-2533. (Pubitemid 41565972)
-
(2005)
Genes and Development
, vol.19
, Issue.21
, pp. 2526-2533
-
-
Deana, A.1
Belasco, J.G.2
-
33
-
-
0030958772
-
Multiple transcribed elements control expression of the Escherichia coli btuB gene
-
Franklund CV, Kadner RJ (1997) Multiple transcribed elements control expression of the Escherichia coli btuB gene. J Bacteriol 179(12):4039-4042. (Pubitemid 27259925)
-
(1997)
Journal of Bacteriology
, vol.179
, Issue.12
, pp. 4039-4042
-
-
Franklund, C.V.1
Kadner, R.J.2
-
34
-
-
0032431907
-
Coupled changes in translation and transcription during cobalamin-dependent regulation of btuB expression in Escherichia coli
-
Nou X, Kadner RJ (1998) Coupled changes in translation and transcription during cobalamin-dependent regulation of btuB expression in Escherichia coli. J Bacteriol 180(24):6719-6728.
-
(1998)
J Bacteriol
, vol.180
, Issue.24
, pp. 6719-6728
-
-
Nou, X.1
Kadner, R.J.2
-
35
-
-
33749527393
-
Structural analysis of kasugamycin inhibition of translation
-
DOI 10.1038/nsmb1150, PII NSMB1150
-
Schuwirth BS, et al. (2006) Structural analysis of kasugamycin inhibition of translation. Nat Struct Mol Biol 13(10):879-886. (Pubitemid 44527369)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.10
, pp. 879-886
-
-
Schuwirth, B.S.1
Day, J.M.2
Hau, C.W.3
Janssen, G.R.4
Dahlberg, A.E.5
Cate, J.H.D.6
Vila-Sanjurjo, A.7
-
36
-
-
79851499341
-
Comparative study between transcriptionally- And translationallyacting adenine riboswitches reveals key differences in riboswitch regulatorymechanisms
-
Lemay JF, et al. (2011) Comparative study between transcriptionally- and translationallyacting adenine riboswitches reveals key differences in riboswitch regulatorymechanisms. PLoS Genet 7(1):e1001278.
-
(2011)
PLoS Genet
, vol.7
, Issue.1
-
-
Lemay, J.F.1
-
37
-
-
34447548824
-
Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control
-
DOI 10.1002/cbic.200700057
-
Rieder R, Lang K, Graber D, Micura R (2007) Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control. ChemBioChem 8(8):896-902. (Pubitemid 47194838)
-
(2007)
ChemBioChem
, vol.8
, Issue.8
, pp. 896-902
-
-
Rieder, R.1
Lang, K.2
Graber, D.3
Micura, R.4
-
38
-
-
0032531768
-
Ribonuclease E is a 5? -end-dependent endonuclease
-
Mackie GA (1998) Ribonuclease E is a 5? -end-dependent endonuclease. Nature 395(6703):720-723.
-
(1998)
Nature
, vol.395
, Issue.6703
, pp. 720-723
-
-
Mackie, G.A.1
-
39
-
-
0037221712
-
Ectopic RNase E sites promote bypass of 5′-end-dependent mRNA decay in Escherichia coli
-
DOI 10.1046/j.1365-2958.2003.03292.x
-
Baker KE, Mackie GA (2003) Ectopic RNase E sites promote bypass of 5′-enddependent mRNA decay in Escherichia coli. Mol Microbiol 47(1):75-88. (Pubitemid 36051325)
-
(2003)
Molecular Microbiology
, vol.47
, Issue.1
, pp. 75-88
-
-
Baker, K.E.1
Mackie, G.A.2
-
40
-
-
0027234192
-
tRNA as a positive regulator of transcription antitermination in B. subtilis
-
Grundy FJ, Henkin TM (1993) tRNA as a positive regulator of transcription antitermination in B. subtilis. Cell 74(3):475-482. (Pubitemid 23244613)
-
(1993)
Cell
, vol.74
, Issue.3
, pp. 475-482
-
-
Grundy, F.J.1
Henkin, T.M.2
-
42
-
-
70450222923
-
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
-
Shahbabian K, Jamalli A, Zig L, Putzer H (2009) RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J 28(22):3523-3533.
-
(2009)
EMBO J
, vol.28
, Issue.22
, pp. 3523-3533
-
-
Shahbabian, K.1
Jamalli, A.2
Zig, L.3
Putzer, H.4
-
43
-
-
39649112587
-
2+ targets the mgtA transcript for degradation by RNase E
-
DOI 10.1111/j.1574-6968.2008.01065.x
-
Spinelli SV, Pontel LB, García Véscovi E, Soncini FC (2008) Regulation of magnesium homeostasis in Salmonella: Mg(2+) targets the mgtA transcript for degradation by RNase E. FEMS Microbiol Lett 280(2):226-234. (Pubitemid 351287520)
-
(2008)
FEMS Microbiology Letters
, vol.280
, Issue.2
, pp. 226-234
-
-
Spinelli, S.V.1
Pontel, L.B.2
Garcia, V.E.3
Soncini, F.C.4
-
44
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
DOI 10.1038/nature02362
-
Winkler WC, Nahvi A, Roth A, Collins JA, Breaker RR (2004) Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428(6980):281-286. (Pubitemid 38418792)
-
(2004)
Nature
, vol.428
, Issue.6980
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
45
-
-
37249040135
-
Mechanism of mRNA destabilization by the glmS ribozyme
-
DOI 10.1101/gad.1605307
-
Collins JA, Irnov I, Baker S, Winkler WC (2007) Mechanism of mRNA destabilization by the glmS ribozyme. Genes Dev 21(24):3356-3368. (Pubitemid 350277761)
-
(2007)
Genes and Development
, vol.21
, Issue.24
, pp. 3356-3368
-
-
Collins, J.A.1
Irnov, I.2
Baker, S.3
Winkler, W.C.4
-
46
-
-
0034705144
-
An efficient recombination system for chromosome engineering in Escherichia coli
-
DOI 10.1073/pnas.100127597
-
Yu D, et al. (2000) An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci USA 97(11):5978-5983. (Pubitemid 30367509)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.11
, pp. 5978-5983
-
-
Yu, D.1
Ellis, H.M.2
Lee, E.-C.3
Jenkins, N.A.4
Copeland, N.G.5
Court, D.L.6
-
47
-
-
65349177758
-
A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system
-
Mandin P, Gottesman S (2009) A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system. Mol Microbiol 72(3):551-565.
-
(2009)
Mol Microbiol
, vol.72
, Issue.3
, pp. 551-565
-
-
Mandin, P.1
Gottesman, S.2
-
49
-
-
34249777280
-
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
-
DOI 10.1111/j.1365-2958.2007.05733.x
-
Prévost K, et al. (2007) The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. Mol Microbiol 64(5):1260-1273. (Pubitemid 46849016)
-
(2007)
Molecular Microbiology
, vol.64
, Issue.5
, pp. 1260-1273
-
-
Prevost, K.1
Salvail, H.2
Desnoyers, G.3
Jacques, J.-F.4
Phaneuf, E.5
Masse, E.6
-
50
-
-
0019888537
-
Evidence for two functional gal promoters in intact Escherichia coli cells
-
Aiba H, Adhya S, de Crombrugghe B (1981) Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem 256(22):11905-11910.
-
(1981)
J Biol Chem
, vol.256
, Issue.22
, pp. 11905-11910
-
-
Aiba, H.1
Adhya, S.2
De Crombrugghe, B.3
|