-
1
-
-
15044340366
-
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB
-
DOI 10.1093/nar/gki313
-
AFONYUSHKIN, T., VECEREK, B., MOLL, I., BLÄSI, U. & KABERDIN, V. R. (2005). Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. Nucleic Acids Research 33, 1678-1689. (Pubitemid 41418396)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.5
, pp. 1678-1689
-
-
Afonyushkin, T.1
Vecerek, B.2
Moll, I.3
Blasi, U.4
Kaberdin, V.R.5
-
2
-
-
77957833370
-
Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: cconservation of the RNase E-RhlB interaction in the gammaproteobacteria
-
AIT-BARA, S. & CARPOUSIS, A. J. (2010). Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: conservation of the RNase E-RhlB interaction in the gammaproteobacteria. Journal of Bacteriology 192, 5413-5423.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 5413-5423
-
-
Ait-Bara, S.1
Carpousis, A.J.2
-
3
-
-
0036529621
-
Comparative genomics and evolution of proteins involved in RNA metabolism
-
ANANTHARAMAN, V., KOONIN, E. V. & ARAVIND, L. (2002). Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Research 30, 1427-1464. (Pubitemid 34679722)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.7
, pp. 1427-1464
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
4
-
-
40449098228
-
PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins
-
DOI 10.1261/rna.683308
-
ANDRADE, J.M. & ARRAIANO, C. M. (2008). PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins. RNA 14, 543-551. (Pubitemid 351397819)
-
(2008)
RNA
, vol.14
, Issue.3
, pp. 543-551
-
-
Andrade, J.M.1
Arraiano, C.M.2
-
5
-
-
64049114548
-
The role of 3k-5k exoribonucleases in RNA degradation
-
ANDRADE, J. M., POBRE, V., SILVA, I. J., DOMINGUES, S. & ARRAIANO, C. M. (2009). The role of 3k-5k exoribonucleases in RNA degradation. Progress in Molecular Biology and Translational Science 85, 187-229.
-
(2009)
Progress in Molecular Biology and Translational Science
, vol.85
, pp. 187-229
-
-
Andrade, J.M.1
Pobre, V.2
Silva, I.J.3
Domingues, S.4
Arraiano, C.M.5
-
6
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
DOI 10.1016/S0960-9822(01)00270-6
-
ARGAMAN, L., HERSHBERG, R., VOGEL, J., BEJERANO, G., WAGNER, E. G., MARGALIT, H. & ALTUVIA, S. (2001). Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Current Biology 11, 941-950. (Pubitemid 32589185)
-
(2001)
Current Biology
, vol.11
, Issue.12
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.H.5
Margalit, H.6
Altuvia, S.7
-
7
-
-
0031951386
-
MRNA stabilization by the ompA 5k untranslated region: Two protective elements hinder distinct pathways for mRNA degradation
-
ARNOLD, T. E., YU, J. & BELASCO, J. G. (1998). mRNA stabilization by the ompA 5k untranslated region: two protective elements hinder distinct pathways for mRNA degradation. RNA 4, 319-330.
-
(1998)
RNA
, vol.4
, pp. 319-330
-
-
Arnold, T.E.1
Yu, J.2
Belasco, J.G.3
-
8
-
-
34247169597
-
CsrB sRNA family: sequestration of RNA-binding regulatory proteins
-
DOI 10.1016/j.mib.2007.03.007, PII S1369527407000240, Cell Regulation (RNA Special Issue)
-
BABITZKE, P. & ROMEO, T. (2007). CsrB sRNA family: sequestration of RNA-binding regulatory proteins. Current Opinion in Microbiology 10, 156-163. (Pubitemid 46590047)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 156-163
-
-
Babitzke, P.1
Romeo, T.2
-
9
-
-
43449093719
-
Lipid spirals in Bacillus subtilis and their role in cell division
-
DOI 10.1111/j.1365-2958.2008.06236.x
-
BARAK, I., MUCHOVA, K., WILKINSON, A. J., O'TOOLE, P. J. & PAVLENDOVA, N. (2008). Lipid spirals in Bacillus subtilis and their role in cell division. Molecular Microbiology 68, 1315-1327. (Pubitemid 351670204)
-
(2008)
Molecular Microbiology
, vol.68
, Issue.5
, pp. 1315-1327
-
-
Barak, I.1
Muchova, K.2
Wilkinson, A.J.3
O'Toole, P.J.4
Pavlendova, N.5
-
10
-
-
78751468963
-
Degradation of ribosomal RNA during starvation: Comparison to quality control during steadystate growth and a role for RNase PH
-
BASTUREA, G. N., ZUNDEL, M.A. & DEUTSCHER, M.P. (2011). Degradation of ribosomal RNA during starvation: comparison to quality control during steadystate growth and a role for RNase PH. RNA 17, 338-345.
-
(2011)
RNA
, vol.17
, pp. 338-345
-
-
Basturea, G.N.1
Zundel, M.A.2
Deutscher, M.P.3
-
11
-
-
79959469361
-
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq
-
BEICH-FRANDSEN, M., VECEREK, B., KONAREV, P. V., SJOBLOM, B., KLOIBER, K., HAMMERLE, H., RAJKOWITSCH, L., MILES, A. J., KONTAXIS, G., WALLACE, B. A., SVERGUN, D. I., KONRAT, R., BLASI, U. & DJINOVICCARUGO, K. (2011). Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Nucleic Acids Research 39, 4900-4915.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. 4900-4915
-
-
Beich-Frandsen, M.1
Vecerek, B.2
Konarev, P.V.3
Sjoblom, B.4
Kloiber, K.5
Hammerle, H.6
Rajkowitsch, L.7
Miles, A.J.8
Kontaxis, G.9
Wallace, B.A.10
Svergun, D.I.11
Konrat, R.12
Blasi, U.13
Djinoviccarugo, K.14
-
12
-
-
79251559383
-
The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli
-
BEISEL, C. L. & STORZ, G. (2011). The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli. Molecular Cell 41, 286-297.
-
(2011)
Molecular Cell
, vol.41
, pp. 286-297
-
-
Beisel, C.L.1
Storz, G.2
-
13
-
-
1542267833
-
Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
-
DOI 10.1073/pnas.0308747101
-
BERNSTEIN, J. A., LIN, P. H., COHEN, S.N. & LIN-CHAO, S. (2004). Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America 101, 2758-2763. (Pubitemid 38327684)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.9
, pp. 2758-2763
-
-
Bernstein, J.A.1
Lin, P.-H.2
Cohen, S.N.3
Lin-Chao, S.4
-
14
-
-
0030779484
-
Polyphosphate kinase is a component of the Escherichia coli RNA degradosome
-
BLUM, E., PY, B., CARPOUSIS, A. J. & HIGGINS, C. F. (1997). Polyphosphate kinase is a component of the Escherichia coli RNA degradosome. Molecular Microbiology 26, 387-398. (Pubitemid 27483686)
-
(1997)
Molecular Microbiology
, vol.26
, Issue.2
, pp. 387-398
-
-
Blum, E.1
Py, B.2
Carpousis, A.J.3
Higgins, C.F.4
-
15
-
-
78049393967
-
Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
-
BOHN, C., RIGOULAY, C., CHABELSKAYA, S., SHARMA, C. M., MARCHAIS, A., SKORSKI, P., BOREZEE-DURANT, E., BARBET, R., JACQUET, E., JACQ, A., GAUTHERET, D., FELDEN, B., VOGEL, J. & BOULOC, P. (2010). Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Research 38, 6620-6636.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 6620-6636
-
-
Bohn, C.1
Rigoulay, C.2
Chabelskaya, S.3
Sharma, C.M.4
Marchais, A.5
Skorski, P.6
Borezee-Durant, E.7
Barbet, R.8
Jacquet, E.9
Jacq, A.10
Gautheret, D.11
Felden, B.12
Vogel, J.13
Bouloc, P.14
-
16
-
-
70350336247
-
The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation
-
BONNEAU, F., BASQUIN, J., EBERT, J., LORENTZEN, E. & CONTI, E. (2009). The yeast exosome functions as a macromolecular cage to channel RNA substrates for degradation. Cell 139, 547-559.
-
(2009)
Cell
, vol.139
, pp. 547-559
-
-
Bonneau, F.1
Basquin, J.2
Ebert, J.3
Lorentzen, E.4
Conti, E.5
-
17
-
-
83355166284
-
A tale of two mRNA degradation pathways mediated by RNase e
-
doi:10.1111/j.1365-2958.2011. 07894.x
-
BOUVIER, M. & CARPOUSIS, A. J. (2011). A tale of two mRNA degradation pathways mediated by RNase E. Molecular Microbiology. doi:10.1111/j.1365-2958. 2011. 07894.x.
-
(2011)
Molecular Microbiology
-
-
Bouvier, M.1
Carpousis, A.J.2
-
18
-
-
57149111586
-
Small RNA binding to 5k mRNA coding region inhibits translational initiation
-
BOUVIER, M., SHARMA, C. M., MIKA, F., NIERHAUS, K.H. & VOGEL, J. (2008). Small RNA binding to 5k mRNA coding region inhibits translational initiation. Molecular Cell 32, 827-837.
-
(2008)
Molecular Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
19
-
-
58249090246
-
The native 3D organization of bacterial polysomes
-
BRANDT, F., ETCHELLS, S. A., ORTIZ, J. O., ELCOCK, A. H., HARTL, F.U. & BAUMEISTER, W. (2009). The native 3D organization of bacterial polysomes. Cell 136, 261-271.
-
(2009)
Cell
, vol.136
, pp. 261-271
-
-
Brandt, F.1
Etchells, S.A.2
Ortiz, J.O.3
Elcock, A.H.4
Hartl, F.U.5
Baumeister, W.6
-
20
-
-
34247109118
-
Hfq structure, function and ligand binding
-
DOI 10.1016/j.mib.2007.03.015, PII S1369527407000331, Cell Regulation (RNA Special Issue)
-
BRENNAN, R.G. & LINK, T. M. (2007). Hfq structure, function and ligand binding. Current Opinion in Microbiology 10, 125-133. (Pubitemid 46590055)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
21
-
-
0344394979
-
The quaternary structure of RNase G from Escherichia coli
-
DOI 10.1046/j.1365-2958.2003.03775.x
-
BRIANT, D. J., HANKINS, J. S., COOK, M.A. & MACKIE, G. A. (2003). The quaternary structure of RNase G from Escherichia coli. Molecular Microbiology 50, 1381-1390. (Pubitemid 37475867)
-
(2003)
Molecular Microbiology
, vol.50
, Issue.4
, pp. 1381-1390
-
-
Briant, D.J.1
Hankins, J.S.2
Cook, M.A.3
Mackie, G.A.4
-
22
-
-
33845719997
-
Maturation of the 5′ end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1
-
DOI 10.1111/j.1365-2958.2006.05499.x
-
BRITTON, R. A., WEN, T., SCHAEFER, L., PELLEGRINI, O., UICKER, W. C., MATHY, N., TOBIN, C., DAOU, R., SZYK, J. & CONDON, C. (2007). Maturation of the 5k end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1. Molecular Microbiology 63, 127-138. (Pubitemid 44968114)
-
(2007)
Molecular Microbiology
, vol.63
, Issue.1
, pp. 127-138
-
-
Britton, R.A.1
Wen, T.2
Schaefer, L.3
Pellegrini, O.4
Uicker, W.C.5
Mathy, N.6
Tobin, C.7
Daou, R.8
Szyk, J.9
Condon, C.10
-
23
-
-
0021802254
-
Polyadenylated, noncapped RNA from the archaebacterium Methanococcus vannielii
-
BROWN, J.W. & REEVE, J. N. (1985). Polyadenylated, noncapped RNA from the archaebacterium Methanococcus vannielii. Journal of Bacteriology 162, 909-917. (Pubitemid 15008132)
-
(1985)
Journal of Bacteriology
, vol.162
, Issue.3
, pp. 909-917
-
-
Brown, J.W.1
Reeve, J.N.2
-
24
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
DOI 10.1038/nature03239
-
BUTLAND, G., PEREGRIN-ALVAREZ, J. M., LI, J., YANG, W., YANG, X., CANADIEN, V., STAROSTINE, A., RICHARDS, D., BEATTIE, B., KROGAN, N., DAVEY, M., PARKINSON, J., GREENBLATT, J. & EMILI, A. (2005). Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433, 531-537. (Pubitemid 40204311)
-
(2005)
Nature
, vol.433
, Issue.7025
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
Canadien, V.6
Starostine, A.7
Richards, D.8
Beattie, B.9
Krogan, N.10
Davey, M.11
Parkinson, J.12
Greenblatt, J.13
Emili, A.14
-
25
-
-
3242802943
-
Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E
-
DOI 10.1016/j.jmb.2004.05.046, PII S0022283604006163
-
CALLAGHAN, A. J., AURIKKO, J. P., ILAG, L. L., GROSSMANN, J. G., CHANDRAN, V., KÜ HNEL, K., POLJAK, L., CARPOUSIS, A. J., ROBINSON, C. V., SYMMONS, M.F. & LUISI, B. F. (2004). Studies of the RNA degradosomeorganizing domain of the Escherichia coli ribonuclease RNase E. Journal of Molecular Biology 340, 965-979. (Pubitemid 38968695)
-
(2004)
Journal of Molecular Biology
, vol.340
, Issue.5
, pp. 965-979
-
-
Callaghan, A.J.1
Aurikko, J.P.2
Ilag, L.L.3
Gunter Grossmann, J.4
Chandran, V.5
Kuhnel, K.6
Poljak, L.7
Carpousis, A.J.8
Robinson, C.V.9
Symmons, M.F.10
Luisi, B.F.11
-
26
-
-
0344412947
-
Quaternary Structure and Catalytic Activity of the Escherichia coli Ribonuclease E Amino-Terminal Catalytic Domain
-
DOI 10.1021/bi0351099
-
CALLAGHAN, A. J., GROSSMANN, J. G., REDKO, Y. U., ILAG, L. L., MONCRIEFFE, M. C., SYMMONS, M. F., ROBINSON, C. V., MCDOWALL, K.J. & LUISI, B. F. (2003). Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain. Biochemistry 42, 13848-13855. (Pubitemid 37466610)
-
(2003)
Biochemistry
, vol.42
, Issue.47
, pp. 13848-13855
-
-
Callaghan, A.J.1
Grossmann, J.G.2
Redko, Y.U.3
Ilag, L.L.4
Moncrieffe, M.C.5
Symmons, M.F.6
Robinson, C.V.7
McDowall, K.J.8
Luisi, B.F.9
-
27
-
-
27144495430
-
Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover
-
DOI 10.1038/nature04084, PII N04084
-
CALLAGHAN, A. J., MARCAIDA, M. J., STEAD, J. A., MCDOWALL, K. J., SCOTT, W.G. & LUISI, B. F. (2005a). Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature 437, 1187-1191. (Pubitemid 41509359)
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1187-1191
-
-
Callaghan, A.J.1
Marcaida, M.J.2
Stead, J.A.3
McDowall, K.J.4
Scott, W.G.5
Luisi, B.F.6
-
28
-
-
20144381893
-
'Zn-Link': A metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E
-
DOI 10.1021/bi0478244
-
CALLAGHAN, A. J., REDKO, Y., MURPHY, L. M., GROSSMANN, J. G., YATES, D., GARMAN, E., ILAG, L. L., ROBINSON, C. V., SYMMONS, M. F., MCDOWALL, K. J. & LUISI, B. F. (2005b). "Zn-link": a metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E. Biochemistry 4667-4675. (Pubitemid 40396745)
-
(2005)
Biochemistry
, vol.44
, Issue.12
, pp. 4667-4675
-
-
Callaghan, A.J.1
Redko, Y.2
Murphy, L.M.3
Grossmann, J.G.4
Yates, D.5
Garman, E.6
Ilag, L.L.7
Robinson, C.V.8
Symmons, M.F.9
McDowall, K.J.10
Luisi, B.F.11
-
29
-
-
0037102538
-
Metallo-β-lactamase fold within nucleic acids processing enzymes: The β-CASP family
-
CALLEBAUT, I., MOSHOUS, D., MORNON, J.P. & DE VILLARTAY, J. P. (2002). Metallo-beta-lactamase fold within nucleic acids processing enzymes: the beta-CASP family. Nucleic Acids Research 30, 3592-3601. (Pubitemid 34919215)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.16
, pp. 3592-3601
-
-
Callebaut, I.1
Moshous, D.2
Mornon, J.-P.3
De Villartay, J.-P.4
-
30
-
-
77954388432
-
The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phase
-
CARABETTA, V. J., SILHAVY, T. J. & CRISTEA, I. M. (2010). The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phase. Journal of Bacteriology 192, 3713-3721.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 3713-3721
-
-
Carabetta, V.J.1
Silhavy, T.J.2
Cristea, I.M.3
-
31
-
-
35548995356
-
The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E
-
DOI 10.1146/annurev.micro.61.080706.093440
-
CARPOUSIS, A. J. (2007). The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E. Annual Review of Microbiology 61, 71-87. (Pubitemid 350058200)
-
(2007)
Annual Review of Microbiology
, vol.61
, pp. 71-87
-
-
Carpousis, A.J.1
-
32
-
-
64049118181
-
Endonucleolytic initiation of mRNA decay in Escherichia coli
-
CARPOUSIS, A. J., LUISI, B. F. & MCDOWALL, K. J. (2009). Endonucleolytic initiation of mRNA decay in Escherichia coli. Progress in Molecular Biology and Translational Science 85, 91-135.
-
(2009)
Progress in Molecular Biology and Translational Science
, vol.85
, pp. 91-135
-
-
Carpousis, A.J.1
Luisi, B.F.2
McDowall, K.J.3
-
33
-
-
0028269435
-
Copurification of E. coli RNAase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
-
DOI 10.1016/0092-8674(94)90363-8
-
CARPOUSIS, A. J., VAN HOUWE, G., EHRETSMANN, C. & KRISCH, H. M. (1994). Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell 76, 889-900. (Pubitemid 24085326)
-
(1994)
Cell
, vol.76
, Issue.5
, pp. 889-900
-
-
Carpousis, A.J.1
Van Houwe, G.2
Ehretsmann, C.3
Krisch, H.M.4
-
34
-
-
33748742341
-
Retention of core catalytic functions by a conserved minimal ribonuclease E peptide that lacks the domain required for tetramer formation
-
DOI 10.1074/jbc.M602467200
-
CARUTHERS, J. M., FENG, Y. N., MCKAY, D. B. & COHEN, S. N. (2006). Retention of core catalytic functions by a conserved minimal ribonuclease E peptide that lacks the domain required for tetramer formation. Journal of Biological Chemistry 281, 27046-27051. (Pubitemid 44401733)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.37
, pp. 27046-27051
-
-
Caruthers, J.M.1
Feng, Y.2
McKay, D.B.3
Cohen, S.N.4
-
35
-
-
34250875706
-
Initiation of RNA Decay in Escherichia coli by 5′ Pyrophosphate Removal
-
DOI 10.1016/j.molcel.2007.05.038, PII S1097276507003644
-
CELESNIK, H., DEANA, A. & BELASCO, J. G. (2007). Initiation of RNA decay in Escherichia coli by 5k pyrophosphate removal. Molecular Cell 27, 79-90. (Pubitemid 46991386)
-
(2007)
Molecular Cell
, vol.27
, Issue.1
, pp. 79-90
-
-
Celesnik, H.1
Deana, A.2
Belasco, J.G.3
-
36
-
-
33645097025
-
Recognition of enolase in the Escherichia coli RNA degradosome
-
CHANDRAN, V. & LUISI, B. F. (2006). Recognition of enolase in the Escherichia coli RNA degradosome. Journal of Molecular Biology 358, 8-15.
-
(2006)
Journal of Molecular Biology
, vol.358
, pp. 8-15
-
-
Chandran, V.1
Luisi, B.F.2
-
37
-
-
33847117737
-
Recognition and Cooperation Between the ATP-dependent RNA Helicase RhlB and Ribonuclease RNase E
-
DOI 10.1016/j.jmb.2006.12.014, PII S0022283606016731
-
CHANDRAN, V., POLJAK, L., VANZO, N. F., LEROY, A., MIGUEL, R. N., FERNANDEZ-RECIO, J., PARKINSON, J., BURNS, C., CARPOUSIS, A.J. & LUISI, B.F. (2007). Recognition and cooperation between the ATPdependent RNA helicase RhlB and ribonuclease RNase E. Journal of Molecular Biology 367, 113-132. (Pubitemid 46290654)
-
(2007)
Journal of Molecular Biology
, vol.367
, Issue.1
, pp. 113-132
-
-
Chandran, V.1
Poljak, L.2
Vanzo, N.F.3
Leroy, A.4
Miguel, R.N.5
Fernandez-Recio, J.6
Parkinson, J.7
Burns, C.8
Carpousis, A.J.9
Luisi, B.F.10
-
39
-
-
2542557396
-
CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit
-
DOI 10.1093/nar/gkh603
-
CHAROLLAIS, J., DREYFUS, M. & IOST, I. (2004). CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Research 32, 2751-2759. (Pubitemid 38885946)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.9
, pp. 2751-2759
-
-
Charollais, J.1
Dreyfus, M.2
Iost, I.3
-
41
-
-
77952922398
-
Euryarchaeal b-CASP Proteins with homology to bacterial RNase J have 5k to 3k exoribonuclease activity
-
CLOUET-D'ORVAL, B., RINALDI, D., QUENTIN, Y. & CARPOUSIS, A. J. (2010). Euryarchaeal b-CASP Proteins with homology to bacterial RNase J have 5k to 3k exoribonuclease activity. Journal of Biological Chemistry 285, 17574-17583.
-
(2010)
Journal of Biological Chemistry
, vol.285
, pp. 17574-17583
-
-
Clouet-D'Orval, B.1
Rinaldi, D.2
Quentin, Y.3
Carpousis, A.J.4
-
42
-
-
0033214259
-
Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3 exonuclease and a DEAD-box RNA helicase
-
DOI 10.1101/gad.13.19.2594
-
COBURN, G. A., MIAO, X., BRIANT, D. J. & MACKIE, G.A. (1999). Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3k exonuclease and a DEAD-box RNA helicase. Genes and Development 13, 2594-2603. (Pubitemid 29489650)
-
(1999)
Genes and Development
, vol.13
, Issue.19
, pp. 2594-2603
-
-
Coburn, G.A.1
Miao, X.2
Briant, D.J.3
Mackie, G.A.4
-
43
-
-
65649104440
-
A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay
-
COLE, S. E., LARIVIERE, F. J., MERRIKH, C.N. & MOORE, M. J. (2009). A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay. Molecular Cell 34, 440-450.
-
(2009)
Molecular Cell
, vol.34
, pp. 440-450
-
-
Cole, S.E.1
Lariviere, F.J.2
Merrikh, C.N.3
Moore, M.J.4
-
44
-
-
37249040135
-
Mechanism of mRNA destabilization by the glmS ribozyme
-
DOI 10.1101/gad.1605307
-
COLLINS, J. A., IRNOV, I., BAKER, S. & WINKLER, W.C. (2007). Mechanism of mRNA destabilization by the glmS ribozyme. Genes and Development 21, 3356-3368. (Pubitemid 350277761)
-
(2007)
Genes and Development
, vol.21
, Issue.24
, pp. 3356-3368
-
-
Collins, J.A.1
Irnov, I.2
Baker, S.3
Winkler, W.C.4
-
45
-
-
67650514021
-
Novel activities of glycolytic enzymes in Bacillus subtilis: iinteractions with essential proteins involved in mRNA processing
-
COMMICHAU, F. M., ROTHE, F. M., HERZBERG, C., WAGNER, E., HELLWIG, D., LEHNIK-HABRINK, M., HAMMER, E., VÖLKER, U. & STÜLKE, J. (2009). Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing. Molecular and Cellular Proteomics 8, 1350-1360.
-
(2009)
Molecular and Cellular Proteomics
, vol.8
, pp. 1350-1360
-
-
Commichau, F.M.1
Rothe, F.M.2
Herzberg, C.3
Wagner, E.4
Hellwig, D.5
Lehnik-Habrink, M.6
Hammer, E.7
Völker, U.8
Stülke, J.9
-
46
-
-
0037977118
-
RNA processing and degradation in Bacillus subtilis
-
DOI 10.1128/MMBR.67.2.157-174.2003
-
CONDON, C. (2003). RNA processing and degradation in Bacillus subtilis. Microbiology and Molecular Biology Reviews 67, 157-174. (Pubitemid 36693470)
-
(2003)
Microbiology and Molecular Biology Reviews
, vol.67
, Issue.2
, pp. 157-174
-
-
Condon, C.1
-
47
-
-
0031547969
-
Processing of the Bacillus subtilis thrS leader mRNA is RNase E-dependent in Escherichia coli
-
DOI 10.1006/jmbi.1997.0971
-
CONDON, C., PUTZER, H., LUO, D. & GRUNBERG-MANAGO, M. (1997). Processing of the Bacillus subtilis thrS leader mRNA is RNase E-dependent in Escherichia coli. Journal of Molecular Biology 268, 235-242. (Pubitemid 27208050)
-
(1997)
Journal of Molecular Biology
, vol.268
, Issue.2
, pp. 235-242
-
-
Condon, C.1
Putzer, H.2
Luo, D.3
Grunberg-Manago, M.4
-
48
-
-
33344473656
-
The DEAD-box protein family of RNA helicases
-
DOI 10.1016/j.gene.2005.10.019, PII S0378111905006359
-
CORDIN, O., BANROQUES, J., TANNER, N.K. & LINDER, P. (2006). The DEAD-box protein family of RNA helicases. Gene 367, 17-37. (Pubitemid 43286737)
-
(2006)
Gene
, vol.367
, Issue.1-2
, pp. 17-37
-
-
Cordin, O.1
Banroques, J.2
Tanner, N.K.3
Linder, P.4
-
49
-
-
0031588599
-
Comparison between the Escherichia coli and Bacillus subtilis genomes suggests that a major function of polynucleotide phosphorylase is to synthesize CDP
-
DANCHIN, A. (1997). Comparison between the Escherichia coli and Bacillus subtilis genomes suggests that a major function of polynucleotide phosphorylase is to synthesize CDP. DNA Research 4, 9-18. (Pubitemid 127699020)
-
(1997)
DNA Research
, vol.4
, Issue.1
, pp. 9-18
-
-
Danchin, A.1
-
50
-
-
62449224615
-
Ribosomes initiating translation of the hbs mRNA protect it from 5k-to-3k exoribonucleolytic degradation by RNase J1
-
DAOU-CHABO, R., MATHY, N., BENARD, L. & CONDON, C. (2009). Ribosomes initiating translation of the hbs mRNA protect it from 5k-to-3k exoribonucleolytic degradation by RNase J1. Molecular Microbiology 71, 1538-1550.
-
(2009)
Molecular Microbiology
, vol.71
, pp. 1538-1550
-
-
Daou-Chabo, R.1
Mathy, N.2
Benard, L.3
Condon, C.4
-
51
-
-
35648972123
-
The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels
-
DOI 10.1073/pnas.0707476104
-
DARAN-LAPUJADE, P., ROSSELL, S., VAN GULIK, W. M., LUTTIK, M. A., DE GROOT, M. J., SLIJPER, M., HECK, A. J., DARAN, J. M., DE WINDE, J. H., WESTERHOFF, H. V., PRONK, J. T. & BAKKER, B. M. (2007). The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels. Proceedings of the National Academy of Sciences of the United States of America 104, 15753-15758. (Pubitemid 350035372)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.40
, pp. 15753-15758
-
-
Daran-Lapujade, P.1
Rossell, S.2
Van Gulik, W.M.3
Luttik, M.A.H.4
De Groot, M.J.L.5
Slijper, M.6
Heck, A.J.R.7
Daran, J.-M.8
De Winde, J.H.9
Westerhoff, H.V.10
Pronk, J.T.11
Bakker, B.M.12
-
52
-
-
38849144533
-
Structural insights into the dual activity of RNase J
-
DOI 10.1038/nsmb.1376, PII NSMB1376
-
DE LA SIERRA-GALLAY, I. L., ZIG, L., JAMALLI, A. & PUTZER, H. (2008). Structural insights into the dual activity of RNase J. Nature Structural & Molecular Biology 15, 206-212. (Pubitemid 351207513)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.2
, pp. 206-212
-
-
De La Sierra-Gallay, I.L.1
Zig, L.2
Jamalli, A.3
Putzer, H.4
-
53
-
-
38349117689
-
The bacterial enzyme RppH triggers messenger RNA degradation by 5k pyrophosphate removal
-
DEANA, A., CELESNIK, H. & BELASCO, J. G. (2008). The bacterial enzyme RppH triggers messenger RNA degradation by 5k pyrophosphate removal. Nature 451, 355-358.
-
(2008)
Nature
, vol.451
, pp. 355-358
-
-
Deana, A.1
Celesnik, H.2
Belasco, J.G.3
-
54
-
-
55549083174
-
Regulation of Escherichia coli polynucleotide phosphorylase by ATP
-
DEL FAVERO, M., MAZZANTINI, E., BRIANI, F., ZANGROSSI, S., TORTORA, P. & DEHO, G. (2008). Regulation of Escherichia coli polynucleotide phosphorylase by ATP. Journal of Biological Chemistry 283, 27355-27359.
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 27355-27359
-
-
Del Favero, M.1
Mazzantini, E.2
Briani, F.3
Zangrossi, S.4
Tortora, P.5
Deho, G.6
-
55
-
-
23944490117
-
Missense meanderings in sequence space: A biophysical view of protein evolution
-
DOI 10.1038/nrg1672
-
DEPRISTO, M. A., WEINREICH, D.M. & HARTL, D.L. (2005). Missense meanderings in sequence space: a biophysical view of protein evolution. Nature Reviews Genetics 6, 678-687. (Pubitemid 41192319)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.9
, pp. 678-687
-
-
DePristo, M.A.1
Weinreich, D.M.2
Hartl, D.L.3
-
56
-
-
48249102000
-
Phylogeny.fr: rrobust phylogenetic analysis for the non-specialist
-
DEREEPER, A., GUIGNON, V., BLANC, G., AUDIC, S., BUFFET, S., CHEVENET, F., DUFAYARD, J. F., GUINDON, S., LEFORT, V., LESCOT, M., CLAVERIE, J.M. & GASCUEL, O. (2008). Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research 36, W465-W469.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
Chevenet, F.6
Dufayard, J.F.7
Guindon, S.8
Lefort, V.9
Lescot, M.10
Claverie, J.M.11
Gascuel, O.12
-
57
-
-
32644435694
-
Degradation of RNA in bacteria: Comparison of mRNA and stable RNA
-
DOI 10.1093/nar/gkj472
-
DEUTSCHER, M. P. (2006). Degradation of RNA in bacteria: comparison of mRNA and stable RNA. Nucleic Acids Research 34, 659-666. (Pubitemid 43240252)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.2
, pp. 659-666
-
-
Deutscher, M.P.1
-
59
-
-
49549122501
-
Understanding eukaryotic linear motifs and their role in cell signaling and regulation
-
DIELLA, F., HASLAM, N., CHICA, C., BUDD, A., MICHAEL, S., BROWN, N. P., TRAVE, G. & GIBSON, T. J. (2008). Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Frontiers in Bioscience 13, 6580-6603.
-
(2008)
Frontiers in Bioscience
, vol.13
, pp. 6580-6603
-
-
Diella, F.1
Haslam, N.2
Chica, C.3
Budd, A.4
Michael, S.5
Brown, N.P.6
Trave, G.7
Gibson, T.J.8
-
60
-
-
79960083390
-
Processive movement of MreBassociated cell wall biosynthetic complexes in bacteria
-
DOMINGUEZ-ESCOBAR, J., CHASTANET, A., CREVENNA, A. H., FROMION, V., WEDLICH-SOLDNER, R. & CARBALLIDOLOPEZ, R. (2011). Processive movement of MreBassociated cell wall biosynthetic complexes in bacteria. Science 333, 225-228.
-
(2011)
Science
, vol.333
, pp. 225-228
-
-
Dominguez-Escobar, J.1
Chastanet, A.2
Crevenna, A.H.3
Fromion, V.4
Wedlich-Soldner, R.5
Carballidolopez, R.6
-
61
-
-
57049095821
-
Function and structure of inherently disordered proteins
-
DUNKER, A. K., SILMAN, I., UVERSKY, V.N. & SUSSMAN, J. L. (2008). Function and structure of inherently disordered proteins. Current Opinion in Structural Biology 18, 756-764.
-
(2008)
Current Opinion in Structural Biology
, vol.18
, pp. 756-764
-
-
Dunker, A.K.1
Silman, I.2
Uversky, V.N.3
Sussman, J.L.4
-
62
-
-
0037449772
-
The yeast mitochondrial degradosome: Its composition, interplay between RNA helicase and RNase activities and the role in mitochondrial RNA metabolism
-
DOI 10.1074/jbc.M208287200
-
DZIEMBOWSKI, A., PIWOWARSKI, J., HOSER, R., MINCZUK, M., DMOCHOWSKA, A., SIEP, M., VAN DER SPEK, H., GRIVELL, L. & STEPIEN, P. P. (2003). The yeast mitochondrial degradosome. Its composition, interplay between RNA helicase and RNase activities and the role in mitochondrial RNA metabolism. Journal of Biological Chemistry 278, 1603-1611. (Pubitemid 36801390)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.3
, pp. 1603-1611
-
-
Dziembowski, A.1
Piwowarski, J.2
Hoser, R.3
Minczuk, M.4
Dmochowska, A.5
Siep, M.6
Van Der Spek, H.7
Grivell, L.8
Stepien, P.P.9
-
63
-
-
0026559344
-
Specificity of Escherichia coli endoribonuclease Rnase-E-in vivo and in vitro analysis of mutants in a bacteriophage-T4 messenger-RNA processing site
-
EHRETSMANN, C. P., CARPOUSIS, A. J. & KRISCH, H.M. (1992). Specificity of Escherichia coli endoribonuclease Rnase-E-in vivo and in vitro analysis of mutants in a bacteriophage-T4 messenger-RNA processing site. Genes and Development 6, 149-159.
-
(1992)
Genes and Development
, vol.6
, pp. 149-159
-
-
Ehretsmann, C.P.1
Carpousis, A.J.2
Krisch, H.M.3
-
64
-
-
67349116514
-
Identification and functional analysis of RNase e of Vibrio angustum S14 and two-hybrid analysis of its interaction partners
-
ERCE, M. A., LOW, J. K. K., MARCH, P. E., WILKINS, M. R. & TAKAYAMA, K. M. (2009). Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms 1794, 1107-1114.
-
(2009)
Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
, vol.1794
, pp. 1107-1114
-
-
Erce, M.A.1
Low, J.K.K.2
March, P.E.3
Wilkins, M.R.4
Takayama, K.M.5
-
65
-
-
78650023635
-
Analysis of the RNA degradosome complex in Vibrio angustum S14
-
ERCE, M. A., LOW, J.K.K. & WILKINS, M. R. (2010). Analysis of the RNA degradosome complex in Vibrio angustum S14. FEBS Journal 277, 5161-5173.
-
(2010)
FEBS Journal
, vol.277
, pp. 5161-5173
-
-
Erce, M.A.1
Low, J.K.K.2
Wilkins, M.R.3
-
66
-
-
17844361922
-
Ribonucleases J1 and J2: Two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E
-
DOI 10.1093/nar/gki505
-
EVEN, S., PELLEGRINI, O., ZIG, L., LABAS, V., VINH, J., BRECHEMMIER-BAEY, D. & PUTZER, H. (2005). Ribonucleases J1 and J2: two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase E. Nucleic Acids Research 33, 2141-2152. (Pubitemid 41439882)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.7
, pp. 2141-2152
-
-
Even, S.1
Pellegrini, O.2
Zig, L.3
Labas, V.4
Vinh, J.5
Brechemmier-Baey, D.6
Putzer, H.7
-
68
-
-
57349189421
-
Small toxic proteins and the antisense RNAs that repress them
-
FOZO, E. M., HEMM, M. R.&STORZ, G. (2008). Small toxic proteins and the antisense RNAs that repress them. Microbiology and Molecular Biology Review 72, 579-589.
-
(2008)
Microbiology and Molecular Biology Review
, vol.72
, pp. 579-589
-
-
Fozo, E.M.1
Hemm, M.R.2
Storz, G.3
-
69
-
-
0031711821
-
Ribonuclease P: Unity and diversity in a tRNA processing ribozyme
-
DOI 10.1146/annurev.biochem.67.1.153
-
FRANK, D.N. & PACE, N. R. (1998). Ribonuclease P: unity and diversity in a tRNA processing ribozyme. Annual Review of Biochemistry 67, 153-180. (Pubitemid 28411127)
-
(1998)
Annual Review of Biochemistry
, vol.67
, pp. 153-180
-
-
Frank, D.N.1
Pace, N.R.2
-
70
-
-
34047240365
-
Transcription and translation are coupled in Archaea
-
DOI 10.1093/molbev/msm007
-
FRENCH, S. L., SANTANGELO, T. J., BEYER, A. L. & REEVE, J. N. (2007). Transcription and translation are coupled in Archaea. Molecular Biology and Evolution 24, 893-895. (Pubitemid 46536700)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.4
, pp. 893-895
-
-
French, S.L.1
Santangelo, T.J.2
Beyer, A.L.3
Reeve, J.N.4
-
71
-
-
33748506522
-
Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome
-
DOI 10.1111/j.1365-2958.2006.05246.x
-
GAO, J., LEE, K., ZHAO, M., QIU, J., ZHAN, X., SAXENA, A., MOORE, C. J., COHEN, S.N. & GEORGIOU, G. (2006). Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome. Molecular Microbiology 61, 394-406. (Pubitemid 44356571)
-
(2006)
Molecular Microbiology
, vol.61
, Issue.2
, pp. 394-406
-
-
Gao, J.1
Lee, K.2
Zhao, M.3
Qiu, J.4
Zhan, X.5
Saxena, A.6
Moore, C.J.7
Cohen, S.N.8
Georgiou, G.9
-
72
-
-
33847771442
-
The highways and byways of mRNA decay
-
DOI 10.1038/nrm2104, PII NRM2104
-
GARNEAU, N. L., WILUSZ, J. & WILUSZ, C. J. (2007). The highways and byways of mRNA decay. Nature Reviews Molecular and Cell Biology 8, 113-126. (Pubitemid 46432531)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.2
, pp. 113-126
-
-
Garneau, N.L.1
Wilusz, J.2
Wilusz, C.J.3
-
73
-
-
70450230359
-
Substrate binding and active site residues in RNases e and G: Role of the 5k-sensor
-
GARREY, S. M., BLECH, M., RIFFELL, J. L., HANKINS, J. S., STICKNEY, L. M., DIVER, M., HSU, Y. H. R., KUNANITHY, V. & MACKIE, G. A. (2009). Substrate binding and active site residues in RNases E and G: role of the 5k-sensor. Journal of Biological Chemistry 284, 31843-31850.
-
(2009)
Journal of Biological Chemistry
, vol.284
, pp. 31843-31850
-
-
Garrey, S.M.1
Blech, M.2
Riffell, J.L.3
Hankins, J.S.4
Stickney, L.M.5
Diver, M.6
Hsu, Y.H.R.7
Kunanithy, V.8
MacKie, G.A.9
-
74
-
-
79958839563
-
Roles of the 5kphosphate sensor domain in RNase e
-
GARREY, S.M. & MACKIE, G. A. (2011). Roles of the 5kphosphate sensor domain in RNase E. Molecular Microbiology 80, 1613-1624.
-
(2011)
Molecular Microbiology
, vol.80
, pp. 1613-1624
-
-
Garrey, S.M.1
MacKie, G.A.2
-
75
-
-
77956533718
-
(P)ppGpp inhibits polynucleotide phosphorylase from Streptomyces but not from Escherichia coli and increases the stability of bulk mRNA in Streptomyces coelicolor
-
GATEWOOD, M. L. & JONES, G. H. (2010). (p)ppGpp inhibits polynucleotide phosphorylase from Streptomyces but not from Escherichia coli and increases the stability of bulk mRNA in Streptomyces coelicolor. Journal of Bacteriology 192, 4275-4280.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 4275-4280
-
-
Gatewood, M.L.1
Jones, G.H.2
-
76
-
-
70349308508
-
Cell regulation: Determined to signal discrete cooperation
-
GIBSON, T. J. (2009). Cell regulation: determined to signal discrete cooperation. Trends in Biochemical Sciences 34, 471-482.
-
(2009)
Trends in Biochemical Sciences
, vol.34
, pp. 471-482
-
-
Gibson, T.J.1
-
77
-
-
34447092677
-
The EJC Factor eIF4AIII Modulates Synaptic Strength and Neuronal Protein Expression
-
DOI 10.1016/j.cell.2007.05.028, PII S0092867407006678
-
GIORGI, C., YEO, G. W., STONE, M. E., KATZ, D. B., BURGE, C., TURRIGIANO, G. &MOORE, M. J. (2007). The EJC factor eIF4AIII modulates synaptic strength and neuronal protein expression. Cell 130, 179-191. (Pubitemid 47031322)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 179-191
-
-
Giorgi, C.1
Yeo, G.W.2
Stone, M.E.3
Katz, D.B.4
Burge, C.5
Turrigiano, G.6
Moore, M.J.7
-
78
-
-
55749104092
-
Noncoding RNA control of the making and breaking of sugars
-
GÖRKE, B. & VOGEL, J. (2008). Noncoding RNA control of the making and breaking of sugars. Genes and Development 22, 2914-2925.
-
(2008)
Genes and Development
, vol.22
, pp. 2914-2925
-
-
Görke, B.1
Vogel, J.2
-
80
-
-
77149138644
-
The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome
-
GÓRNA, M. W., PIETRAS, Z., TSAI, Y. C., CALLAGHAN, A. J., HERNANDEZ, H., ROBINSON, C.V. & LUISI, B. F. (2010). The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome. RNA 16, 553-562.
-
(2010)
RNA
, vol.16
, pp. 553-562
-
-
Górna, M.W.1
Pietras, Z.2
Tsai, Y.C.3
Callaghan, A.J.4
Hernandez, H.5
Robinson, C.V.6
Luisi, B.F.7
-
81
-
-
20644462362
-
Micros for microbes: Non-coding regulatory RNAs in bacteria
-
DOI 10.1016/j.tig.2005.05.008, PII S0168952505001381
-
GOTTESMAN, S. (2005). Micros for microbes: non-coding regulatory RNAs in bacteria. Trends Genet 21, 399-404. (Pubitemid 40835726)
-
(2005)
Trends in Genetics
, vol.21
, Issue.7
, pp. 399-404
-
-
Gottesman, S.1
-
82
-
-
84863924309
-
Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
-
doi:10.1101/cshperspect.a003798
-
GOTTESMAN, S. & STORZ, G. (2010). Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harbor Perspectives in Biology doi:10.1101/cshperspect.a003798.
-
(2010)
Cold Spring Harbor Perspectives in Biology
-
-
Gottesman, S.1
Storz, G.2
-
83
-
-
0033368475
-
Messenger RNA stability and its role in control of gene expression in bacteria and phages
-
DOI 10.1146/annurev.genet.33.1.193
-
GRUNBERG-MANAGO, M. (1999). Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annual Review of Genetics 33, 193-227. (Pubitemid 30083123)
-
(1999)
Annual Review of Genetics
, vol.33
, pp. 193-227
-
-
Grunberg-Manago, M.1
-
84
-
-
0043166304
-
Transcriptional and post-transcriptional control of cold-shock genes
-
DOI 10.1016/S0022-2836(03)00732-0
-
GUALERZI, C. O., GIULIODORI, A.M. & PON, C. L. (2003). Transcriptional and post-transcriptional control of coldshock genes. Journal of Molecular Biology 331, 527-539. (Pubitemid 36937143)
-
(2003)
Journal of Molecular Biology
, vol.331
, Issue.3
, pp. 527-539
-
-
Gualerzi, C.O.1
Giuliodori, A.M.2
Pon, C.L.3
-
85
-
-
0037309985
-
Extended disordered proteins: Targeting function with less scaffold
-
DOI 10.1016/S0968-0004(03)00003-3
-
GUNASEKARAN, K., TSAI, C. J., KUMAR, S., ZANUY, D. & NUSSINOV, R. (2003). Extended disordered proteins: targeting function with less scaffold. Trends in Biochemical Sciences 28, 81-85. (Pubitemid 36165136)
-
(2003)
Trends in Biochemical Sciences
, vol.28
, Issue.2
, pp. 81-85
-
-
Gunasekaran, K.1
Tsai, C.-J.2
Kumar, S.3
Zanuy, D.4
Nussinov, R.5
-
86
-
-
35748932045
-
Topology of the global regulatory network of carbon limitation in Escherichia coli
-
DOI 10.1016/j.jbiotec.2007.08.029, PII S0168165607015210
-
HARDIMAN, T., LEMUTH, K., KELLER, M. A., REUSS, M. & SIEMANN-HERZBERG, M. (2007). Topology of the global regulatory network of carbon limitation in Escherichia coli. Journal of Biotechnology 132, 359-374. (Pubitemid 350051078)
-
(2007)
Journal of Biotechnology
, vol.132
, Issue.4
, pp. 359-374
-
-
Hardiman, T.1
Lemuth, K.2
Keller, M.A.3
Reuss, M.4
Siemann-Herzberg, M.5
-
87
-
-
79952321198
-
An RNA degradosome assembly in Caulobacter crescentus
-
HARDWICK, S. W., CHAN, V. S. Y., BROADHURST, R.W. & LUISI, B. F. (2010). An RNA degradosome assembly in Caulobacter crescentus. Nucleic Acids Research 39, 1449-1459.
-
(2010)
Nucleic Acids Research
, vol.39
, pp. 1449-1459
-
-
Hardwick, S.W.1
Chan, V.S.Y.2
Broadhurst, R.W.3
Luisi, B.F.4
-
88
-
-
41149122085
-
Translation initiation factor a/eIF2(-γ) counteracts 5′ to 3′ mRNA decay in the archaeon Sulfolobus solfataricus
-
DOI 10.1073/pnas.0708894105
-
HASENOHRL, D., LOMBO, T., KABERDIN, V., LONDEI, P. & BLASI, U. (2008). Translation initiation factor a/eIF2(-gamma) counteracts 5k to 3k mRNA decay in the archaeon Sulfolobus solfataricus. Proceedings of the National Academy of Sciences of the United States of America 105, 2146-2150. (Pubitemid 351439479)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.6
, pp. 2146-2150
-
-
Hasenohrl, D.1
Lombo, T.2
Kaberdin, V.3
Londei, P.4
Blasi, U.5
-
89
-
-
58049217240
-
Riboswitch RNAs: Using RNA to sense cellular metabolism
-
HENKIN, T. M. (2008). Riboswitch RNAs: using RNA to sense cellular metabolism. Genes and Development 22, 3383-3390.
-
(2008)
Genes and Development
, vol.22
, pp. 3383-3390
-
-
Henkin, T.M.1
-
90
-
-
60149090021
-
The many pathways of RNA degradation
-
HOUSELEY, J.&TOLLERVEY, D. (2009). The many pathways of RNA degradation. Cell 136, 763-776.
-
(2009)
Cell
, vol.136
, pp. 763-776
-
-
Houseley, J.1
Tollervey, D.2
-
91
-
-
70249141564
-
Co-translational mRNA decay in Saccharomyces cerevisiae
-
HU, W., SWEET, T. J., CHAMNONGPOL, S., BAKER, K. E. & COLLER, J. (2009). Co-translational mRNA decay in Saccharomyces cerevisiae. Nature 461, 225-229.
-
(2009)
Nature
, vol.461
, pp. 225-229
-
-
Hu, W.1
Sweet, T.J.2
Chamnongpol, S.3
Baker, K.E.4
Coller, J.5
-
92
-
-
33749645818
-
Functional analysis of 11 putative essential genes in Bacillus subtilis
-
DOI 10.1099/mic.0.29152-0
-
HUNT, A., RAWLINS, J. P., THOMAIDES, H. B. & ERRINGTON, J. (2006). Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology 152, 2895-2907. (Pubitemid 44542371)
-
(2006)
Microbiology
, vol.152
, Issue.10
, pp. 2895-2907
-
-
Hunt, A.1
Rawlins, J.P.2
Thomaides, H.B.3
Errington, J.4
-
94
-
-
78651067735
-
Hfq binding at RhlB-recognition region of RNase e is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
-
IKEDA, Y., YAGI, M., MORITA, T. & AIBA, H. (2011). Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli. Molecular Microbiology 79, 419-432.
-
(2011)
Molecular Microbiology
, vol.79
, pp. 419-432
-
-
Ikeda, Y.1
Yagi, M.2
Morita, T.3
Aiba, H.4
-
95
-
-
33749125440
-
DEAD-box RNA helicases in Escherichia coli
-
DOI 10.1093/nar/gkl500
-
IOST, I. & DREYFUS, M. (2006). DEAD-box RNA helicases in Escherichia coli. Nucleic Acids Research 34, 4189-4197. (Pubitemid 44542198)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.15
, pp. 4189-4197
-
-
Iost, I.1
Dreyfus, M.2
-
96
-
-
0035890909
-
An mRNA degrading complex in Rhodobacter capsulatus
-
JÄGER, S., FUHRMANN, O., HECK, C., HEBERMEHL, M., SCHILTZ, E., RAUHUT, R. & KLUG, G. (2001). An mRNA degrading complex in Rhodobacter capsulatus. Nucleic Acids Research 29, 4581-4588. (Pubitemid 33095018)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.22
, pp. 4581-4588
-
-
Jager, S.1
Fuhrmann, O.2
Heck, C.3
Hebermehl, M.4
Schiltz, E.5
Rauhut, R.6
Klug, G.7
-
97
-
-
38649135052
-
The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly
-
DOI 10.1261/rna.800308
-
JAIN, C. (2008). The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly. RNA 14, 381-389. (Pubitemid 351171597)
-
(2008)
RNA
, vol.14
, Issue.2
, pp. 381-389
-
-
Jain, C.1
-
98
-
-
58549100261
-
Transcript stability in the protein interaction network of Escherichia coli
-
JANGA, S.C. & BABU, M. M. (2009). Transcript stability in the protein interaction network of Escherichia coli. Molecular BioSystems 5, 154-162.
-
(2009)
Molecular BioSystems
, vol.5
, pp. 154-162
-
-
Janga, S.C.1
Babu, M.M.2
-
99
-
-
78650854687
-
RNA helicases at work: Binding and rearranging
-
JANKOWSKY, E. (2011). RNA helicases at work: binding and rearranging. Trends in Biochemical Sciences 36, 19-29.
-
(2011)
Trends in Biochemical Sciences
, vol.36
, pp. 19-29
-
-
Jankowsky, E.1
-
101
-
-
36849032886
-
Sensing of 5′ monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo
-
DOI 10.1111/j.1365-2958.2007.06028.x
-
JOURDAN, S.S. & MCDOWALL, K. J. (2008). Sensing of 5k monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo. Molecular Microbiology 67, 102-115. (Pubitemid 350231139)
-
(2008)
Molecular Microbiology
, vol.67
, Issue.1
, pp. 102-115
-
-
Jourdan, S.S.1
McDowall, K.J.2
-
102
-
-
85011939098
-
Unraveling new roles for minor components of the E. coli RNA degradosome
-
KABERDIN, V. R. & LIN-CHAO, S. (2009). Unraveling new roles for minor components of the E. coli RNA degradosome. RNA Biology 6, 402-405.
-
(2009)
RNA Biology
, vol.6
, pp. 402-405
-
-
Kaberdin, V.R.1
Lin-Chao, S.2
-
103
-
-
0034636985
-
Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease e
-
KABERDIN, V. R., WALSH, A. P., JAKOBSEN, T., MCDOWALL, K. J. & VON GABAIN, A. (2000). Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E. Journal of Molecular Biology 301, 257-264.
-
(2000)
Journal of Molecular Biology
, vol.301
, pp. 257-264
-
-
Kaberdin, V.R.1
Walsh, A.P.2
Jakobsen, T.3
McDowall, K.J.4
Von Gabain, A.5
-
104
-
-
0038630513
-
Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus
-
DOI 10.1042/BJ20021968
-
KANAI, A., OIDA, H., MATSUURA, N. & DOI, H. (2003). Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus. Biochemical Journal 372, 253-261. (Pubitemid 36609629)
-
(2003)
Biochemical Journal
, vol.372
, Issue.1
, pp. 253-261
-
-
Kanai, A.1
Oida, H.2
Matsuura, N.3
Doi, H.4
-
105
-
-
77952721475
-
Virulence gene regulation by CvfA, a putative RNase: The CvfA-enolase complex in Streptococcus pyogenes links nutritional stress, growth-phase control, and virulence gene expression
-
KANG, S. O., CAPARON, M.G. & CHO, K. H. (2010). Virulence gene regulation by CvfA, a putative RNase: the CvfA-enolase complex in Streptococcus pyogenes links nutritional stress, growth-phase control, and virulence gene expression. Infection and Immunity 78, 2754-2767.
-
(2010)
Infection and Immunity
, vol.78
, pp. 2754-2767
-
-
Kang, S.O.1
Caparon, M.G.2
Cho, K.H.3
-
106
-
-
34547913808
-
Construction of consecutive deletions of the Escherichia coli chromosome
-
KATO, J. I. & HASHIMOTO, M. (2007). Construction of consecutive deletions of the Escherichia coli chromosome. Molecular Systems Biology 3, 132.
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 132
-
-
Kato, J.I.1
Hashimoto, M.2
-
107
-
-
1242342956
-
The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers
-
DOI 10.1046/j.1365-2958.2003.03862.x
-
KHEMICI, V. & CARPOUSIS, A. J. (2004). The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Molecular Microbiology 51, 777-790. (Pubitemid 38233943)
-
(2004)
Molecular Microbiology
, vol.51
, Issue.3
, pp. 777-790
-
-
Khemici, V.1
Carpousis, A.J.2
-
108
-
-
54249138245
-
The RNase e of Escherichia coli is a membranebinding protein
-
KHEMICI, V., POLJAK, L., LUISI, B. F. & CARPOUSIS, A. J. (2008). The RNase E of Escherichia coli is a membranebinding protein. Molecular Microbiology 70, 799-813.
-
(2008)
Molecular Microbiology
, vol.70
, pp. 799-813
-
-
Khemici, V.1
Poljak, L.2
Luisi, B.F.3
Carpousis, A.J.4
-
109
-
-
18744410390
-
Evidence in vivo that the DEAD-box RNA helicase RhIB facilitates the degradation of ribosome-free mRNA by RNase E
-
DOI 10.1073/pnas.0501129102
-
KHEMICI, V., POLJAK, L., TOESCA, I. & CARPOUSIS, A. J. (2005). Evidence in vivo that the DEAD-box RNA helicase RhlB facilitates the degradation of ribosome-free mRNA by RNase E. Proceedings of the National Academy of Sciences of the United States of America 102, 6913-6918. (Pubitemid 40675416)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.19
, pp. 6913-6918
-
-
Khemici, V.1
Poljak, L.2
Toesca, I.3
Carpousis, A.J.4
-
110
-
-
9644277144
-
The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: Functional replacement of RhlB by RhlE
-
DOI 10.1111/j.1365-2958.2004.04361.x
-
KHEMICI, V., TOESCA, I., POLJAK, L., VANZO, N.F. & CARPOUSIS, A. J. (2004). The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: functional replacement of RhlB by RhlE. Molecular Microbiology 54, 1422-1430. (Pubitemid 39578282)
-
(2004)
Molecular Microbiology
, vol.54
, Issue.5
, pp. 1422-1430
-
-
Khemici, V.1
Toesca, I.2
Poljak, L.3
Vanzo, N.F.4
Carpousis, A.J.5
-
111
-
-
0029889965
-
RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli
-
KIDO, M., YAMANAKA, K., MITANI, T., NIKI, H., OGURA, T. & HIRAGA, S. (1996). RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli. Journal of Bacteriology 178, 3917-3925. (Pubitemid 26227210)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.13
, pp. 3917-3925
-
-
Kido, M.1
Yamanaka, K.2
Mitani, T.3
Niki, H.4
Ogura, T.5
Hiraga, S.6
-
112
-
-
11344264898
-
Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases
-
DOI 10.1093/nar/gkh939
-
KIM, K. S. & LEE, Y. (2004). Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases. Nucleic Acids Research 32, 6057-6068. (Pubitemid 40074000)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.20
, pp. 6057-6068
-
-
Kim, K.-S.1
Lee, Y.2
-
113
-
-
77951539769
-
Rapid cleavage of RNA by RNase e in the absence of 5k monophosphate stimulation
-
KIME, L., JOURDAN, S. S., STEAD, J. A., HIDALGO-SASTRE, A. & MCDOWALL, K. J. (2010). Rapid cleavage of RNA by RNase E in the absence of 5k monophosphate stimulation. Molecular Microbiology 76, 590-604.
-
(2010)
Molecular Microbiology
, vol.76
, pp. 590-604
-
-
Kime, L.1
Jourdan, S.S.2
Stead, J.A.3
Hidalgo-Sastre, A.4
McDowall, K.J.5
-
114
-
-
0034745504
-
Prediction of the archeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
DOI 10.1101/gr.162001
-
KOONIN, E. V., WOLF, Y.I. & ARAVIND, L. (2001). Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Research 11, 240-252. (Pubitemid 32166533)
-
(2001)
Genome Research
, vol.11
, Issue.2
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
115
-
-
48349130534
-
The crystal structure of the Escherichia coli RNase e apoprotein and a mechanism for RNA degradation
-
KOSLOVER, D. J., CALLAGHAN, A. J., MARCAIDA, M. J., GARMAN, E. F., MARTICK, M., SCOTT, W.G. & LUISI, B. F. (2008). The crystal structure of the Escherichia coli RNase E apoprotein and a mechanism for RNA degradation. Structure 16, 1238-1244.
-
(2008)
Structure
, vol.16
, pp. 1238-1244
-
-
Koslover, D.J.1
Callaghan, A.J.2
Marcaida, M.J.3
Garman, E.F.4
Martick, M.5
Scott, W.G.6
Luisi, B.F.7
-
116
-
-
28044440919
-
Mycobacterial RNase E-associated proteins
-
KOVACS, L., CSANADI, A., MEGYERI, K., KABERDIN, V. R. & MICZAK, A. (2005). Mycobacterial RNase E-associated proteins. Microbiology and Immunology 49, 1003-1007. (Pubitemid 41687175)
-
(2005)
Microbiology and Immunology
, vol.49
, Issue.11
, pp. 1003-1007
-
-
Kovacs, L.1
Csanadi, A.2
Megyeri, K.3
Kaberdin, V.R.4
Miczak, A.5
-
117
-
-
57749189164
-
Endonucleolytic RNA cleavage by a eukaryotic exosome
-
LEBRETON, A., TOMECKI, R., DZIEMBOWSKI, A. & SERAPHIN, B. (2008). Endonucleolytic RNA cleavage by a eukaryotic exosome. Nature 456, 993-996.
-
(2008)
Nature
, vol.456
, pp. 993-996
-
-
Lebreton, A.1
Tomecki, R.2
Dziembowski, A.3
Seraphin, B.4
-
118
-
-
0036274640
-
RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli
-
DOI 10.1046/j.1365-2958.2002.02848.x
-
LEE, K., BERNSTEIN, J. A. & COHEN, S. N. (2002). RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Molecular Microbiology 43, 1445-1456. (Pubitemid 34595537)
-
(2002)
Molecular Microbiology
, vol.43
, Issue.6
, pp. 1445-1456
-
-
Lee, K.1
Bernstein, J.A.2
Cohen, S.N.3
-
119
-
-
0038687705
-
A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains
-
DOI 10.1046/j.1365-2958.2003.03435.x
-
LEE, K. & COHEN, S. N. (2003). A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains. Molecular Microbiology 48, 349-360. (Pubitemid 36819073)
-
(2003)
Molecular Microbiology
, vol.48
, Issue.2
, pp. 349-360
-
-
Lee, K.1
Cohen, S.N.2
-
120
-
-
0043224223
-
RraA: A protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli
-
DOI 10.1016/j.cell.2003.08.003
-
LEE, K., ZHAN, X., GAO, J., QIU, J., FENG, Y., MEGANATHAN, R., COHEN, S.N. & GEORGIOU, G. (2003). RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli. Cell 114, 623-634. (Pubitemid 37159258)
-
(2003)
Cell
, vol.114
, Issue.5
, pp. 623-634
-
-
Lee, K.1
Zhan, X.2
Gao, J.3
Qiu, J.4
Feng, Y.5
Meganathan, R.6
Cohen, S.N.7
Georgiou, G.8
-
121
-
-
77955351104
-
The RNA degradosome in Bacillus subtilis: iidentification of CshA as the major RNA helicase in the multiprotein complex
-
LEHNIK-HABRINK, M., PFORTNER, H., REMPETERS, L., PIETACK, N., HERZBERG, C. & STULKE, J. (2010). The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complex. Molecular Microbiology 77, 958-971.
-
(2010)
Molecular Microbiology
, vol.77
, pp. 958-971
-
-
Lehnik-Habrink, M.1
Pfortner, H.2
Rempeters, L.3
Pietack, N.4
Herzberg, C.5
Stulke, J.6
-
122
-
-
80053594659
-
RNase y in Bacillus subtilis: A natively disordered protein that is the functional equivalent to RNase e from Escherichia coli
-
LEHNIK-HABRINK, M., NEWMAN, J., ROTHE, F. M., SOLOVYOVA, A. S., RODRIGUES, C., HERZBERG, C., COMMICHAU, F. M., LEWIS, R. J. & STULKE, J. (2011). RNase Y in Bacillus subtilis: a natively disordered protein that is the functional equivalent to RNase E from Escherichia coli. Journal of Bacteriology 193, 5431-5441.
-
(2011)
Journal of Bacteriology
, vol.193
, pp. 5431-5441
-
-
Lehnik-Habrink, M.1
Newman, J.2
Rothe, F.M.3
Solovyova, A.S.4
Rodrigues, C.5
Herzberg, C.6
Commichau, F.M.7
Lewis, R.J.8
Stulke, J.9
-
123
-
-
57049083416
-
The multienzyme architecture of eukaryotic fatty acid synthases
-
LEIBUNDGUT, M., MAIER, T., JENNI, S. & BAN, N. (2008). The multienzyme architecture of eukaryotic fatty acid synthases. Current Opinion in Structural Biology 18, 714-725.
-
(2008)
Current Opinion in Structural Biology
, vol.18
, pp. 714-725
-
-
Leibundgut, M.1
Maier, T.2
Jenni, S.3
Ban, N.4
-
124
-
-
0036047092
-
Function in Escherichia coli of the non-catalytic part of RNase E: Role in the degradation of ribosome-free mRNA
-
DOI 10.1046/j.1365-2958.2002.03104.x
-
LEROY, A., VANZO, N. F., SOUSA, S., DREYFUS, M. & CARPOUSIS, A. J. (2002). Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. Molecular Microbiology 45, 1231-1243. (Pubitemid 35015348)
-
(2002)
Molecular Microbiology
, vol.45
, Issue.5
, pp. 1231-1243
-
-
Leroy, A.1
Vanzo, N.F.2
Sousa, S.3
Dreyfus, M.4
Carpousis, A.J.5
-
125
-
-
0036210631
-
RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors
-
DOI 10.1017/S1355838202014929
-
LI, Z. & DEUTSCHER, M. P. (2002). RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors. RNA 8, 97-109. (Pubitemid 34260169)
-
(2002)
RNA
, vol.8
, Issue.1
, pp. 97-109
-
-
Li, Z.1
Deutscher, M.P.2
-
126
-
-
0033607239
-
Rnase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
-
DOI 10.1073/pnas.96.22.12406
-
LIN-CHAO, S., WEI, C. L. & LIN, Y. T. (1999). RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proceedings of the National Academy of Sciences of the United States of America 96, 12406-12411. (Pubitemid 29513515)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.22
, pp. 12406-12411
-
-
Lin-Chao, S.1
Wei, C.-L.2
Lin, Y.-T.3
-
127
-
-
0028276973
-
Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid
-
LIN-CHAO, S., WONG, T. T., MCDOWALL, K. J. & COHEN, S. N. (1994). Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid. Journal of Biological Chemistry 269, 10797-10803. (Pubitemid 24198291)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.14
, pp. 10797-10803
-
-
Lin-Chao, S.1
Wong, T.-T.2
McDowall, K.J.3
Cohen, S.N.4
-
128
-
-
72049095718
-
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
-
LINK, T. M., VALENTIN-HANSEN, P. & BRENNAN, R.G. (2009). Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proceedings of the National Academy of Sciences of the United States of America 106, 19286-19291.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 19286-19291
-
-
Link, T.M.1
Valentin-Hansen, P.2
Brennan, R.G.3
-
129
-
-
0037174922
-
Dead box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double-stranded RNA independent of the degradosome-assembling region of RNase E
-
DOI 10.1074/jbc.M206618200
-
LIOU, G. G., CHANG, H. Y., LIN, C. S. & LIN-CHAO, S. (2002). DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double-stranded RNA independent of the degradosome-assembling region of RNase E. Journal of Biological Chemistry 277, 41157-41162. (Pubitemid 35215707)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.43
, pp. 41157-41162
-
-
Liou, G.-G.1
Chang, H.-Y.2
Lin, C.-S.3
Lin-Chao, S.4
-
130
-
-
0035793043
-
RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E
-
DOI 10.1073/pnas.011535498
-
LIOU, G. G., JANE, W. N., COHEN, S. N., LIN, N. S. & LINCHAO, S. (2001). RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E. Proceedings of the National Academy of Sciences of the United States of America 98, 63-68. (Pubitemid 32095864)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.1
, pp. 63-68
-
-
Liou, G.-G.1
Jane, W.-N.2
Cohen, S.N.3
Lin, N.-S.4
Lin-Chao, S.5
-
131
-
-
34548448958
-
Inferring function using patterns of native disorder in proteins
-
DOI 10.1371/journal.pcbi.0030162
-
LOBLEY, A., SWINDELLS, M. B., ORENGO, C.A. & JONES, D. T. (2007). Inferring function using patterns of native disorder in proteins. PLoS Computational Biology 3, 1567-1579. (Pubitemid 47358064)
-
(2007)
PLoS Computational Biology
, vol.3
, Issue.8
, pp. 1567-1579
-
-
Lobley, A.1
Swindells, M.B.2
Orengo, C.A.3
Jones, D.T.4
-
132
-
-
0033048415
-
The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
-
DOI 10.1046/j.1365-2958.1999.01465.x
-
LOPEZ, P. J., MARCHAND, I., JOYCE, S.A. & DREYFUS, M. (1999). The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Molecular Microbiology 33, 188-199. (Pubitemid 29304199)
-
(1999)
Molecular Microbiology
, vol.33
, Issue.1
, pp. 188-199
-
-
Lopez, P.J.1
Marchand, I.2
Joyce, S.A.3
Dreyfus, M.4
-
133
-
-
22144493835
-
The archaeal exosome core is a hexameric ring structure with three catalytic subunits
-
DOI 10.1038/nsmb952
-
LORENTZEN, E., WALTER, P., FRIBOURG, S., EVGUENIEVAHACKENBERG, E., KLUG, G. & CONTI, E. (2005). The archaeal exosome core is a hexameric ring structure with three catalytic subunits. Nature Structural and Molecular Biology 12, 575-581. (Pubitemid 40980806)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.7
, pp. 575-581
-
-
Lorentzen, E.1
Walter, P.2
Fribourg, S.3
Evguenieva-Hackenberg, E.4
Klug, G.5
Conti, E.6
-
134
-
-
0029295957
-
Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli
-
LUNDBERG, U. & ALTMAN, S. (1995). Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. RNA 1, 327-334.
-
(1995)
RNA
, vol.1
, pp. 327-334
-
-
Lundberg, U.1
Altman, S.2
-
135
-
-
67649910424
-
Origins and activities of the eukaryotic exosome
-
LYKKE-ANDERSEN, S., BRODERSEN, D.E. & JENSEN, T.H. (2009). Origins and activities of the eukaryotic exosome. Journal of Cell Science 122, 1487-1494.
-
(2009)
Journal of Cell Science
, vol.122
, pp. 1487-1494
-
-
Lykke-Andersen, S.1
Brodersen, D.E.2
Jensen, T.H.3
-
136
-
-
0032531768
-
Ribonuclease e is a 5k-enddependent endonuclease
-
MACKIE, G. A. (1998). Ribonuclease E is a 5k-enddependent endonuclease. Nature 395, 720-723.
-
(1998)
Nature
, vol.395
, pp. 720-723
-
-
MacKie, G.A.1
-
137
-
-
0034682733
-
Stabilization of circular rpsT mRNA demonstrates the 5k-end dependence of RNase e action in vivo
-
MACKIE, G. A. (2000). Stabilization of circular rpsT mRNA demonstrates the 5k-end dependence of RNase E action in vivo. Journal of Biological Chemistry 275, 25069-25072.
-
(2000)
Journal of Biological Chemistry
, vol.275
, pp. 25069-25072
-
-
MacKie, G.A.1
-
138
-
-
18044384417
-
Bacterial small RNA regulators
-
DOI 10.1080/10409230590918702
-
MAJDALANI, N., VANDERPOOL, C.K. & GOTTESMAN, S. (2005). Bacterial small RNA regulators. Critical Reviews in Biochemistry and Molecular Biology 40, 93-113. (Pubitemid 40604978)
-
(2005)
Critical Reviews in Biochemistry and Molecular Biology
, vol.40
, Issue.2
, pp. 93-113
-
-
Majdalani, N.1
Vanderpool, C.K.2
Gottesman, S.3
-
139
-
-
34547683820
-
In vitro Reconstitution and Characterization of the Yeast Mitochondrial Degradosome Complex Unravels Tight Functional Interdependence
-
DOI 10.1016/j.jmb.2007.06.074, PII S0022283607008856
-
MALECKI, M., JEDRZEJCZAK, R., STEPIEN, P. P. & GOLIK, P. (2007). In vitro reconstitution and characterization of the yeast mitochondrial degradosome complex unravels tight functional interdependence. Journal of Molecular Biology 372, 23-36. (Pubitemid 47223232)
-
(2007)
Journal of Molecular Biology
, vol.372
, Issue.1
, pp. 23-36
-
-
Malecki, M.1
Jedrzejczak, R.2
Stepien, P.P.3
Golik, P.4
-
140
-
-
33745838984
-
The RNA degradosome: life in the fast lane of adaptive molecular evolution
-
DOI 10.1016/j.tibs.2006.05.005, PII S0968000406001393
-
MARCAIDA, M. J., DEPRISTO, M. A., CHANDRAN, V., CARPOUSIS, A. J. & LUISI, B. F. (2006). The RNA degradosome: life in the fast lane of adaptive molecular evolution. Trends in Biochemical Sciences 31, 359-365. (Pubitemid 44038917)
-
(2006)
Trends in Biochemical Sciences
, vol.31
, Issue.7
, pp. 359-365
-
-
Marcaida, M.J.1
DePristo, M.A.2
Chandran, V.3
Carpousis, A.J.4
Luisi, B.F.5
-
141
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
DOI 10.1101/gad.1127103
-
MASSÉ, E., ESCORCIA, F.E. & GOTTESMAN, S. (2003). Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes and Development 17, 2374-2383. (Pubitemid 37214786)
-
(2003)
Genes and Development
, vol.17
, Issue.19
, pp. 2374-2383
-
-
Masse, E.1
Escorcia, F.E.2
Gottesman, S.3
-
142
-
-
34247092927
-
Small RNAs controlling iron metabolism
-
DOI 10.1016/j.mib.2007.03.013, PII S1369527407000306, Cell Regulation (RNA Special Issue)
-
MASSÉ, E., SALVAIL, H., DESNOYERS, G. & ARGUIN, M. (2007). Small RNAs controlling iron metabolism. Current Opinion in Microbiology 10, 140-145. (Pubitemid 46590053)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 140-145
-
-
Masse, E.1
Salvail, H.2
Desnoyers, G.3
Arguin, M.4
-
143
-
-
34249101864
-
5′-to-3′ Exoribonuclease Activity in Bacteria: Role of RNase J1 in rRNA Maturation and 5′ Stability of mRNA
-
DOI 10.1016/j.cell.2007.02.051, PII S0092867407004503
-
MATHY, N., BENARD, L., PELLEGRINI, O., DAOU, R.,WEN, T. & CONDON, C. (2007). 5k-to-3k exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5k stability of mRNA. Cell 129, 681-692. (Pubitemid 46802375)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 681-692
-
-
Mathy, N.1
Benard, L.2
Pellegrini, O.3
Daou, R.4
Wen, T.5
Condon, C.6
-
144
-
-
0029962989
-
The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site
-
DOI 10.1006/jmbi.1996.0027
-
MCDOWALL, K. J. & COHEN, S. N. (1996). The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNAbinding site. Journal of Molecular Biology 255, 349-355. (Pubitemid 26105558)
-
(1996)
Journal of Molecular Biology
, vol.255
, Issue.3
, pp. 349-355
-
-
McDowall, K.J.1
Cohen, S.N.2
-
145
-
-
0028987956
-
Site-specific RNase e cleavage of oligonucleotides and inhibition by stemloops
-
MCDOWALL, K. J., KABERDIN, V. R., WU, S. W., COHEN, S. N. & LIN-CHAO, S. (1995). Site-specific RNase E cleavage of oligonucleotides and inhibition by stemloops. Nature 374, 287-290.
-
(1995)
Nature
, vol.374
, pp. 287-290
-
-
McDowall, K.J.1
Kaberdin, V.R.2
Wu, S.W.3
Cohen, S.N.4
Lin-Chao, S.5
-
146
-
-
0028341449
-
A + U content rather than a particular nucleotide order determines the specificity of RNase E cleavage
-
MCDOWALL, K. J., LIN-CHAO, S. & COHEN, S. N. (1994). A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. Journal of Biological Chemistry 269, 10790-10796. (Pubitemid 24198290)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.14
, pp. 10790-10796
-
-
McDowall, K.J.1
Lin-Chaol, S.2
Cohen, S.N.3
-
147
-
-
0029976430
-
Proteins associated with RNase E in a multicomponent ribonucleolytic complex
-
DOI 10.1073/pnas.93.9.3865
-
MICZAK, A., KABERDIN, V. R., WEI, C. L. & LIN-CHAO, S. (1996). Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proceedings of the National Academy of Sciences of the United States of America 93, 3865-3869. (Pubitemid 26144213)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.9
, pp. 3865-3869
-
-
Miczak, A.1
Kaberdin, V.R.2
Wei, C.-L.3
Lin-Chao, S.4
-
148
-
-
0025826583
-
Location of the RNA-processing enzymes RNase III, RNase e and RNase P in
-
MICZAK, A., SRIVASTAVA, R.A. & APIRION, D. (1991). Location of the RNA-processing enzymes RNase III, RNase E and RNase P in the Escherichia coli cell. Molecular Microbiology 5, 1801-1810. (Pubitemid 21896211)
-
(1991)
Molecular Microbiology
, vol.5
, Issue.7
, pp. 1801-1810
-
-
Miczak, A.1
Srivastava, R.A.K.2
Apirion, D.3
-
149
-
-
77953521258
-
An ancient anion-binding structural module in RNA and DNA helicases
-
MILNER-WHITE, E. J., PIETRAS, Z. & LUISI, B. F. (2010). An ancient anion-binding structural module in RNA and DNA helicases. Proteins 78, 1900-1908.
-
(2010)
Proteins
, vol.78
, pp. 1900-1908
-
-
Milner-White, E.J.1
Pietras, Z.2
Luisi, B.F.3
-
150
-
-
0034072252
-
Polynucleotide phosphorylase, RNase II ansi RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli
-
DOI 10.1046/j.1365-2958.2000.01921.x
-
MOHANTY, B.K. & KUSHNER, S. R. (2000). Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli. Molecular Microbiology 36, 982-994. (Pubitemid 30326542)
-
(2000)
Molecular Microbiology
, vol.36
, Issue.4
, pp. 982-994
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
151
-
-
77954242830
-
Spatial organization of the flow of genetic information in bacteria
-
MONTERO LLOPIS, P., JACKSON, A. F., SLIUSARENKO, O., SUROVTSEV, I., HEINRITZ, J., EMONET, T. & JACOBSWAGNER, C. (2010). Spatial organization of the flow of genetic information in bacteria. Nature 466, 77-81.
-
(2010)
Nature
, vol.466
, pp. 77-81
-
-
Montero Llopis, P.1
Jackson, A.F.2
Sliusarenko, O.3
Surovtsev, I.4
Heinritz, J.5
Emonet, T.6
Jacobswagner, C.7
-
152
-
-
8544261105
-
Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli
-
DOI 10.1111/j.1365-2958.2004.04329.x
-
MORITA, T., KAWAMOTO, H., MIZOTA, T., INADA, T.&AIBA, H. (2004). Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli. Molecular Microbiology 54, 1063-1075. (Pubitemid 39491038)
-
(2004)
Molecular Microbiology
, vol.54
, Issue.4
, pp. 1063-1075
-
-
Morita, T.1
Kawamoto, H.2
Mizota, T.3
Inada, T.4
Aiba, H.5
-
153
-
-
24944507588
-
RNase E-based ribonucleoprotein complexes: Mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
-
DOI 10.1101/gad.1330405
-
MORITA, T., MAKI, K. & AIBA, H. (2005). RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes and Development 19, 2176-2186. (Pubitemid 41330319)
-
(2005)
Genes and Development
, vol.19
, Issue.18
, pp. 2176-2186
-
-
Morita, T.1
Maki, K.2
Aiba, H.3
-
154
-
-
46849115380
-
A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis
-
DOI 10.1093/jxb/ern126
-
MUDD, E. A., SULLIVAN, S., GISBY, M. F., MIRONOV, A., KWON, C. S., CHUNG, W. I. & DAY, A. (2008). A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis. Journal of Experimental Botany 59, 2597-2610. (Pubitemid 351957487)
-
(2008)
Journal of Experimental Botany
, vol.59
, Issue.10
, pp. 2597-2610
-
-
Mudd, E.A.1
Sullivan, S.2
Gisby, M.F.3
Mironov, A.4
Kwon, C.S.5
Chung, W.-I.6
Day, A.7
-
155
-
-
79952066011
-
Translation-independent localization of mRNA in E. coli
-
NEVO-DINUR, K., NUSSBAUM-SHOCHAT, A., BEN-YEHUDA, S. & AMSTER-CHODER, O. (2011). Translation-independent localization of mRNA in E. coli. Science 331, 1081-1084.
-
(2011)
Science
, vol.331
, pp. 1081-1084
-
-
Nevo-Dinur, K.1
Nussbaum-Shochat, A.2
Ben-Yehuda, S.3
Amster-Choder, O.4
-
156
-
-
0023663908
-
Differential mRNA stability controls relative gene expression within a polycistronic operon
-
NEWBURY, S. F., SMITH, N.H. & HIGGINS, C. F. (1987a). Differential mRNA stability controls relative gene expression within a polycistronic operon. Cell 51, 1131-1143.
-
(1987)
Cell
, vol.51
, pp. 1131-1143
-
-
Newbury, S.F.1
Smith, N.H.2
Higgins, C.F.3
-
157
-
-
0023667782
-
Stabilization of translationally active mRNA by prokaryotic REP sequences
-
NEWBURY, S. F., SMITH, N. H., ROBINSON, E. C., HILES, I. D. & HIGGINS, C. F. (1987b). Stabilization of translationally active mRNA by prokaryotic REP sequences. Cell 48, 297-310.
-
(1987)
Cell
, vol.48
, pp. 297-310
-
-
Newbury, S.F.1
Smith, N.H.2
Robinson, E.C.3
Hiles, I.D.4
Higgins, C.F.5
-
158
-
-
77956506333
-
Molecular recognition between Escherichia coli enolase and ribonuclease e
-
NURMOHAMED, S., MCKAY, A. R., ROBINSON, C. V. & LUISI, B. F. (2010). Molecular recognition between Escherichia coli enolase and ribonuclease E. Acta crystallographica. Section D, Biological Crystallography 66, 1036-1040.
-
(2010)
Acta Crystallographica. Section D, Biological Crystallography
, vol.66
, pp. 1036-1040
-
-
Nurmohamed, S.1
McKay, A.R.2
Robinson, C.V.3
Luisi, B.F.4
-
159
-
-
67349257830
-
Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: Implications for catalytic mechanism and RNA degradosome assembly
-
NURMOHAMED, S., VAIDIALINGAM, B., CALLAGHAN, A. J. & LUISI, B. F. (2009). Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly. Journal of Molecular Biology 389, 17-33.
-
(2009)
Journal of Molecular Biology
, vol.389
, pp. 17-33
-
-
Nurmohamed, S.1
Vaidialingam, B.2
Callaghan, A.J.3
Luisi, B.F.4
-
160
-
-
79954608650
-
Polynucleotide phosphorylase activity may be modulated by metabolites in Escherichia coli
-
NURMOHAMED, S., VINCENT, H. A., TITMAN, C. M., CHANDRAN, V., PEARS, M. R., DU, D., GRIFFIN, J. L., CALLAGHAN, A. J. & LUISI, B. F. (2011). Polynucleotide phosphorylase activity may be modulated by metabolites in Escherichia coli. Journal of Biological Chemistry 286, 14315-14323.
-
(2011)
Journal of Biological Chemistry
, vol.286
, pp. 14315-14323
-
-
Nurmohamed, S.1
Vincent, H.A.2
Titman, C.M.3
Chandran, V.4
Pears, M.R.5
Du, D.6
Griffin, J.L.7
Callaghan, A.J.8
Luisi, B.F.9
-
161
-
-
4944264194
-
GadY, a small-RNA regulator of acid response genes in Escherichia coli
-
DOI 10.1128/JB.186.20.6698-6705.2004
-
OPDYKE, J. A., KANG, J.G. & STORZ, G. (2004). GadY, a small-RNA regulator of acid response genes in Escherichia coli. Journal of Bacteriology 186, 6698-6705. (Pubitemid 39332106)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.20
, pp. 6698-6705
-
-
Opdyke, J.A.1
Kang, J.-G.2
Storz, G.3
-
162
-
-
0036571060
-
Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli
-
DOI 10.1101/gad.983502
-
OW, M.C. & KUSHNER, S. R. (2002). Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes and Development 16, 1102-1115. (Pubitemid 34507199)
-
(2002)
Genes and Development
, vol.16
, Issue.9
, pp. 1102-1115
-
-
Ow, M.C.1
Kushner, S.R.2
-
163
-
-
0033636189
-
Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
-
OW, M. C., LIU, Q. & KUSHNER, S. R. (2000). Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Molecular Microbiology 38, 854-866.
-
(2000)
Molecular Microbiology
, vol.38
, pp. 854-866
-
-
Ow, M.C.1
Liu, Q.2
Kushner, S.R.3
-
164
-
-
70350176597
-
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
-
PAPENFORT, K., SAID, N., WELSINK, T., LUCCHINI, S., HINTON, J. C.D. & VOGEL, J. (2009). Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Molecular Microbiology 74, 139-158.
-
(2009)
Molecular Microbiology
, vol.74
, pp. 139-158
-
-
Papenfort, K.1
Said, N.2
Welsink, T.3
Lucchini, S.4
Hinton C. J, D.5
Vogel, J.6
-
165
-
-
67649852558
-
Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins
-
PECHMANN, S., LEVY, E. D., TARTAGLIA, G.G. & VENDRUSCOLO, M. (2009). Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins. Proceedings of the National Academy of Sciences of the United States of America 106, 10159-10164.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 10159-10164
-
-
Pechmann, S.1
Levy, E.D.2
Tartaglia, G.G.3
Vendruscolo, M.4
-
166
-
-
47249094203
-
Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpA
-
DOI 10.1111/j.1742-4658.2008.06523.x
-
PEIL, L., VIRUMAE, K. & REMME, J. (2008). Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpA. The FEBS Journal 275, 3772-3782. (Pubitemid 351990942)
-
(2008)
FEBS Journal
, vol.275
, Issue.15
, pp. 3772-3782
-
-
Peil, L.1
Virumae, K.2
Remme, J.3
-
167
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
PFEIFFER, V., PAPENFORT, K., LUCCHINI, S., HINTON, J. C. D. & VOGEL, J. (2009). Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nature Structural and Molecular Biology 16, 840-843.
-
(2009)
Nature Structural and Molecular Biology
, vol.16
, pp. 840-843
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.D.4
Vogel, J.5
-
168
-
-
34547840265
-
Proteins that interact with bacterial small RNA regulators
-
DOI 10.1111/j.1574-6976.2007.00079.x
-
PICHON, C. & FELDEN, B. (2007). Proteins that interact with bacterial small RNA regulators. FEMS Microbiology Reviews 31, 614-625. (Pubitemid 47246182)
-
(2007)
FEMS Microbiology Reviews
, vol.31
, Issue.5
, pp. 614-625
-
-
Pichon, C.1
Felden, B.2
-
169
-
-
33845606715
-
RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R
-
DOI 10.1093/nar/gkl763
-
PORTNOY, V. & SCHUSTER, G. (2006). RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R. Nucleic Acids Research 34, 5923-5931. (Pubitemid 44941171)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.20
, pp. 5923-5931
-
-
Portnoy, V.1
Schuster, G.2
-
170
-
-
34249777280
-
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
-
DOI 10.1111/j.1365-2958.2007.05733.x
-
PRÉVOST, K., SALVAIL, H., DESNOYERS, G., JACQUES, J. F., PHANEUF, E. & MASSÉ, E. (2007). The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. Molecular Microbiology 64, 1260-1273. (Pubitemid 46849016)
-
(2007)
Molecular Microbiology
, vol.64
, Issue.5
, pp. 1260-1273
-
-
Prevost, K.1
Salvail, H.2
Desnoyers, G.3
Jacques, J.-F.4
Phaneuf, E.5
Masse, E.6
-
171
-
-
9644284618
-
Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: Evidence for a 'cold shock degradosome'
-
DOI 10.1111/j.1365-2958.2004.04360.x
-
PRUD'HOMME-GÉNÉREUX, A., BERAN, R. K., IOST, I., RAMEY, C. S., MACKIE, G.A. & SIMONS, R. W. (2004). Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'. Molecular Microbiology 54, 1409-1421. (Pubitemid 39578281)
-
(2004)
Molecular Microbiology
, vol.54
, Issue.5
, pp. 1409-1421
-
-
Prud'homme-Genreux, A.1
Beran, R.K.2
Iost, I.3
Ramey, C.S.4
Mackie, G.A.5
Simons, R.W.6
-
172
-
-
17644380001
-
Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W
-
DOI 10.1074/jbc.M413507200
-
PURUSHARTH, R. I., KLEIN, F., SULTHANA, S., JÄGER, S., JAGANNADHAM, M. V., EVGUENIEVA-HACKENBERG, E., RAY, M.K. & KLUG, G. (2005). Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W. Journal of Biological Chemistry 280, 14572-14578. (Pubitemid 40562800)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.15
, pp. 14572-14578
-
-
Purusharth, R.I.1
Klein, F.2
Sulthana, S.3
Jager, S.4
Jagannadham, M.V.5
Evguenieva-Hackenberg, E.6
Ray, M.K.7
Klug, G.8
-
173
-
-
0027945686
-
A protein complex mediating mRNA degradation in Escherichia coli
-
DOI 10.1111/j.1365-2958.1994.tb01309.x
-
PY, B., CAUSTON, H., MUDD, E. A. &HIGGINS, C. F. (1994). A protein complex mediating mRNA degradation in Escherichia coli. Molecular Microbiology 14, 717-729. (Pubitemid 24364589)
-
(1994)
Molecular Microbiology
, vol.14
, Issue.4
, pp. 717-729
-
-
Py, B.1
Causton, H.2
Mudd, E.A.3
Higgins, C.F.4
-
174
-
-
0029922992
-
A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
-
DOI 10.1038/381169a0
-
PY, B., HIGGINS, C. F., KRISCH, H.M. & CARPOUSIS, A. J. (1996). A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381, 169-172. (Pubitemid 26137967)
-
(1996)
Nature
, vol.381
, Issue.6578
, pp. 169-172
-
-
Py, B.1
Higgins, C.F.2
Krisch, H.M.3
Carpousis, A.J.4
-
175
-
-
48249113056
-
Translocation and unwinding mechanisms of RNA and DNA helicases
-
PYLE, A. M. (2008). Translocation and unwinding mechanisms of RNA and DNA helicases. Annual Review of Biophysics 37, 317-336.
-
(2008)
Annual Review of Biophysics
, vol.37
, pp. 317-336
-
-
Pyle, A.M.1
-
176
-
-
41549097210
-
Translational control by cytoplasmic polyadenylation in Xenopus oocytes
-
DOI 10.1016/j.bbagrm.2008.02.002, PII S1874939908000436
-
RADFORD, H. E., MEIJER, H. A. & DE MOOR, C. H. (2008). Translational control by cytoplasmic polyadenylation in Xenopus oocytes. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms 1779, 217-229. (Pubitemid 351474493)
-
(2008)
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms
, vol.1779
, Issue.4
, pp. 217-229
-
-
Radford, H.E.1
Meijer, H.A.2
De Moor, C.H.3
-
177
-
-
33947360611
-
When all's zed and done: The structure and function of RNase Z in prokaryotes
-
DOI 10.1038/nrmicro1622, PII NRMICRO1622
-
REDKO, Y., LI DE LASIERRA-GALLAY, I. & CONDON, C. (2007). When all's zed and done: the structure and function of RNase Z in prokaryotes. Nature Reviews Microbiology 5, 278-286. (Pubitemid 46443604)
-
(2007)
Nature Reviews Microbiology
, vol.5
, Issue.4
, pp. 278-286
-
-
Redko, Y.1
Li De Lasierra-Gallay, I.2
Condon, C.3
-
178
-
-
33746300776
-
Protein-protein interaction through β-strand addition
-
DOI 10.1016/j.tibs.2006.06.007, PII S0968000406001691
-
REMAUT, H. & WAKSMAN, G. (2006). Protein-protein interaction through beta-strand addition. Trends in Biochemical Sciences 31, 436-444. (Pubitemid 44108661)
-
(2006)
Trends in Biochemical Sciences
, vol.31
, Issue.8
, pp. 436-444
-
-
Remaut, H.1
Waksman, G.2
-
179
-
-
66849122924
-
Decapping is preceded by 3k uridylation in a novel pathway of bulk mRNA turnover
-
RISSLAND, O. S. & NORBURY, C. J. (2009). Decapping is preceded by 3k uridylation in a novel pathway of bulk mRNA turnover. Nature Structural and Molecular Biology 16, 616-U656.
-
(2009)
Nature Structural and Molecular Biology
, vol.16
-
-
Rissland, O.S.1
Norbury, C.J.2
-
180
-
-
67650713931
-
The structural and functional diversity of metabolite-binding riboswitches
-
ROTH, A. & BREAKER, R. R. (2009). The structural and functional diversity of metabolite-binding riboswitches. Annual Review of Biochemistry 78, 305-334.
-
(2009)
Annual Review of Biochemistry
, vol.78
, pp. 305-334
-
-
Roth, A.1
Breaker, R.R.2
-
181
-
-
80053608322
-
Characterization of components of the Staphylococcus aureus messenger RNA degradosome holoenzyme-like complex
-
ROUX, C. M., DEMUTH, J.P. & DUNMAN, P. M. (2011). Characterization of components of the Staphylococcus aureus messenger RNA degradosome holoenzyme-like complex. Journal of Bacteriology 193, 5520-5526.
-
(2011)
Journal of Bacteriology
, vol.193
, pp. 5520-5526
-
-
Roux, C.M.1
Demuth, J.P.2
Dunman, P.M.3
-
182
-
-
41149178980
-
A careful disorderliness in the proteome: Sites for interaction and targets for future therapies
-
RUSSELL, R. B. & GIBSON, T. J. (2008). A careful disorderliness in the proteome: sites for interaction and targets for future therapies. FEBS Letters 582, 1271-1275.
-
(2008)
FEBS Letters
, vol.582
, pp. 1271-1275
-
-
Russell, R.B.1
Gibson, T.J.2
-
183
-
-
0028891945
-
Pleiotropic regulation of central carbohydrate-metabolism in Escherichia coli via the gene csrA
-
SABNIS, N. A., YANG, H.H. & ROMEO, T. (1995). Pleiotropic regulation of central carbohydrate-metabolism in Escherichia coli via the gene csrA. Journal of Biological Chemistry 270, 29096-29104.
-
(1995)
Journal of Biological Chemistry
, vol.270
, pp. 29096-29104
-
-
Sabnis, N.A.1
Yang, H.H.2
Romeo, T.3
-
185
-
-
58149236691
-
The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities
-
SCHAEFFER, D., TSANOVA, B., BARBAS, A., REIS, F. P., DASTIDAR, E. G., SANCHEZ-ROTUNNO, M., ARRAIANO, C. M. & VAN HOOF, A. (2009). The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities. Nature Structural and Molecular Biology 16, 56-62.
-
(2009)
Nature Structural and Molecular Biology
, vol.16
, pp. 56-62
-
-
Schaeffer, D.1
Tsanova, B.2
Barbas, A.3
Reis, F.P.4
Dastidar, E.G.5
Sanchez-Rotunno, M.6
Arraiano, C.M.7
Van Hoof, A.8
-
186
-
-
44149118200
-
The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme
-
DOI 10.1261/rna.907608
-
SCHEIN, A., SHEFFY-LEVIN, S., GLASER, F. & SCHUSTER, G. (2008). The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme. RNA 14, 1057-1068. (Pubitemid 351717487)
-
(2008)
RNA
, vol.14
, Issue.6
, pp. 1057-1068
-
-
Schein, A.1
Sheffy-Levin, S.2
Glaser, F.3
Schuster, G.4
-
187
-
-
0037013852
-
Assigning a function to a conserved group of proteins: The tRNA 3′-processing enzymes
-
DOI 10.1093/emboj/21.11.2769
-
SCHIFFER, S., ROSCH, S. & MARCHFELDER, A. (2002). Assigning a function to a conserved group of proteins: the tRNA 3k-processing enzymes. EMBO Journal 21, 2769-2777. (Pubitemid 34619392)
-
(2002)
EMBO Journal
, vol.21
, Issue.11
, pp. 2769-2777
-
-
Schiffer, S.1
Rosch, S.2
Marchfelder, A.3
-
188
-
-
4143138726
-
Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces
-
DOI 10.1016/j.jmb.2004.05.061, PII S0022283604006412
-
SCHUBERT, M., EDGE, R. E., LARIO, P., COOK, M. A., STRYNADKA, N. C., MACKIE, G.A. & MCINTOSH, L.P. (2004). Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces. Journal of Molecular Biology 341, 37-54. (Pubitemid 39090633)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.1
, pp. 37-54
-
-
Schubert, M.1
Edge, R.E.2
Lario, P.3
Cook, M.A.4
Strynadka, N.C.J.5
Mackie, G.A.6
McIntosh, L.P.7
-
189
-
-
64149115902
-
RNase e autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5k untranslated region
-
SCHUCK, A., DIWA, A. & BELASCO, J. G. (2009). RNase E autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5k untranslated region. Molecular Microbiology 72, 470-478.
-
(2009)
Molecular Microbiology
, vol.72
, pp. 470-478
-
-
Schuck, A.1
Diwa, A.2
Belasco, J.G.3
-
190
-
-
0036645689
-
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: A bacterial Sm-like protein
-
DOI 10.1093/emboj/cdf322
-
SCHUMACHER, M. A., PEARSON, R. F., MOLLER, T., VALENTIN-HANSEN, P. & BRENNAN, R. G. (2002). Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO Journal 21, 3546-3556. (Pubitemid 34760584)
-
(2002)
EMBO Journal
, vol.21
, Issue.13
, pp. 3546-3556
-
-
Schumacher, M.A.1
Pearson, R.F.2
Moller, T.3
Valentin-Hansen, P.4
Brennan, R.G.5
-
191
-
-
70450222923
-
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
-
SHAHBABIAN, K., JAMALLI, A., ZIG, L. & PUTZER, H. (2009). RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO Journal 28, 2523-2533.
-
(2009)
EMBO Journal
, vol.28
, pp. 2523-2533
-
-
Shahbabian, K.1
Jamalli, A.2
Zig, L.3
Putzer, H.4
-
192
-
-
71049181356
-
A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit
-
SHARPE ELLES, L. M., SYKES, M. T., WILLIAMSON, J.R. & UHLENBECK, O. C. (2009). A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit. Nucleic Acids Research 37, 6503-6514.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 6503-6514
-
-
Sharpe Elles, L.M.1
Sykes, M.T.2
Williamson, J.R.3
Uhlenbeck, O.C.4
-
193
-
-
29144481616
-
Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction
-
DOI 10.1073/pnas.0508728102
-
SHEVTSOV, M. B., CHEN, Y. L., GOLLNICK, P. & ANTSON, A. A. (2005). Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction. Proceedings of the National Academy of Sciences of the United States of America 102, 17600-17605. (Pubitemid 41803543)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.49
, pp. 17600-17605
-
-
Shevtsov, M.B.1
Chen, Y.2
Gollnick, P.3
Antson, A.A.4
-
194
-
-
55549093442
-
Crystal structure of Escherichia coli PNPase: Central channel residues are involved in processive RNA degradation
-
SHI, Z., YANG, W. Z., LIN-CHAO, S., CHAK, K. F. & YUAN, H. S. (2008). Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. RNA 14, 2361-2371.
-
(2008)
RNA
, vol.14
, pp. 2361-2371
-
-
Shi, Z.1
Yang, W.Z.2
Lin-Chao, S.3
Chak, K.F.4
Yuan, H.S.5
-
195
-
-
77954837414
-
Guanosine 5k-diphosphate 3k-diphosphate (ppGpp) as a negative modulator of polynucleotide phosphorylase activity in a ' rare ' actinomycete
-
SICULELLA, L., DAMIANO, F., DI SUMMA, R., TREDICI, S. M., ALDUINA, R., GNONI, G.V. & ALIFANO, P. (2010). Guanosine 5k-diphosphate 3k-diphosphate (ppGpp) as a negative modulator of polynucleotide phosphorylase activity in a ' rare ' actinomycete. Molecular Microbiology 77, 716-729.
-
(2010)
Molecular Microbiology
, vol.77
, pp. 716-729
-
-
Siculella, L.1
Damiano, F.2
Di Summa, R.3
Tredici, S.M.4
Alduina, R.5
Gnoni, G.V.6
Alifano, P.7
-
196
-
-
58849112297
-
Regulation of ribonuclease e activity by the L4 ribosomal protein of Escherichia coli
-
SINGH, D., CHANG, S. J., LIN, P. H., AVERINA, O. V., KABERDIN, V. R. & LIN-CHAO, S. (2009). Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 106, 864-869.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 864-869
-
-
Singh, D.1
Chang, S.J.2
Lin, P.H.3
Averina, O.V.4
Kaberdin, V.R.5
Lin-Chao, S.6
-
197
-
-
50849105413
-
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
-
SITTKA, A., LUCCHINI, S., PAPENFORT, K., SHARMA, C. M., ROLLE, K., BINNEWIES, T. T., HINTON, J. C.D.&VOGEL, J. (2008). Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. Plos Genetics 4, e1000163.
-
(2008)
Plos Genetics
, vol.4
-
-
Sittka, A.1
Lucchini, S.2
Papenfort, K.3
Sharma, C.M.4
Rolle, K.5
Binnewies, T.T.6
Hinton, J.C.D.7
Vogel, J.8
-
198
-
-
79955608587
-
Analysis of Escherichia coli RNase e and RNase III activity in vivo using tiling microarrays
-
STEAD, M. B., MARSHBURN, S., MOHANTY, B. K., MITRA, J., CASTILLO, L. P., RAY, D., VAN BAKEL, H., HUGHES, T. R. & KUSHNER, S. R. (2010). Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Research 39, 3188-3203.
-
(2010)
Nucleic Acids Research
, vol.39
, pp. 3188-3203
-
-
Stead, M.B.1
Marshburn, S.2
Mohanty, B.K.3
Mitra, J.4
Castillo, L.P.5
Ray, D.6
Van Bakel, H.7
Hughes, T.R.8
Kushner, S.R.9
-
199
-
-
33748705968
-
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E
-
DOI 10.1101/gad.1461606
-
SUZUKI, K., BABITZKE, P., KUSHNER, S.R. & ROMEO, T. (2006). Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes and Development 20, 2605-2617. (Pubitemid 44396844)
-
(2006)
Genes and Development
, vol.20
, Issue.18
, pp. 2605-2617
-
-
Suzuki, K.1
Babitzke, P.2
Kushner, S.R.3
Romeo, T.4
-
200
-
-
0034435974
-
A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
-
DOI 10.1016/S0969-2126(00)00521-9, PII S0969212600005219
-
SYMMONS, M. F., JONES, G.H. & LUISI, B. F. (2000). A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation. Structure 8, 1215-1226. (Pubitemid 32667486)
-
(2000)
Structure
, vol.8
, Issue.11
, pp. 1215-1226
-
-
Symmons, M.F.1
Jones, G.H.2
Luisi, B.F.3
-
201
-
-
0036164937
-
Running rings around RNA: A superfamily of phosphate-dependent RNases
-
DOI 10.1016/S0968-0004(01)01999-5, PII S0968000401019995
-
SYMMONS, M. F., WILLIAMS, M. G., LUISI, B. F., JONES, G. H. & CARPOUSIS, A. J. (2002). Running rings around RNA: a superfamily of phosphate-dependent RNases. Trends in Biochemical Sciences 27, 11-18. (Pubitemid 34131620)
-
(2002)
Trends in Biochemical Sciences
, vol.27
, Issue.1
, pp. 11-18
-
-
Symmons, M.F.1
Williams, M.G.2
Luisi, B.F.3
Jones, G.H.4
Carpousis, A.J.5
-
202
-
-
75649152422
-
Human mitochondrial RNA turnover caught in flagranti: Involvement of hSuv3p helicase in RNA surveillance
-
SZCZESNY, R. J., BOROWSKI, L. S., BRZEZNIAK, L. K., DMOCHOWSKA, A., GEWARTOWSKI, K., BARTNIK, E. & STEPIEN, P. P. (2009). Human mitochondrial RNA turnover caught in flagranti: involvement of hSuv3p helicase in RNA surveillance. Nucleic Acids Research 38, 279-298.
-
(2009)
Nucleic Acids Research
, vol.38
, pp. 279-298
-
-
Szczesny, R.J.1
Borowski, L.S.2
Brzezniak, L.K.3
Dmochowska, A.4
Gewartowski, K.5
Bartnik, E.6
Stepien, P.P.7
-
203
-
-
33846818898
-
RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton
-
DOI 10.1073/pnas.0610491104
-
TAGHBALOUT, A. & ROTHFIELD, L. (2007). RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton. Proceedings of the National Academy of Sciences of the United States of America 104, 1667-1672. (Pubitemid 46214648)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.5
, pp. 1667-1672
-
-
Taghbalout, A.1
Rothfield, L.2
-
204
-
-
46649086171
-
RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome
-
TAGHBALOUT, A. & ROTHFIELD, L. (2008). RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome. Journal of Biological Chemistry 283, 13850-13855.
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 13850-13855
-
-
Taghbalout, A.1
Rothfield, L.2
-
205
-
-
77953985369
-
Self-assembly of the bacterial cytoskeleton-associated RNA Helicase B protein into polymeric filamentous structures
-
TAGHBALOUT, A. & YANG, Q. F. (2010). Self-assembly of the bacterial cytoskeleton-associated RNA Helicase B protein into polymeric filamentous structures. Journal of Bacteriology 192, 3222-3226.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 3222-3226
-
-
Taghbalout, A.1
Yang, Q.F.2
-
206
-
-
21644439017
-
A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells
-
DOI 10.1111/j.1365-2443.2005.00872.x
-
TAKADA, A., NAGAI, K. &WACHI, M. (2005). A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells. Genes Cells 10, 733-741. (Pubitemid 40932352)
-
(2005)
Genes to Cells
, vol.10
, Issue.7
, pp. 733-741
-
-
Takada, A.1
Nagai, K.2
Wachi, M.3
-
207
-
-
0037082426
-
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing
-
TANG, T. H., ROZHDESTVENSKY, T. S., D'ORVAL, B. C., BORTOLIN, M. L., HUBER, H., CHARPENTIER, B., BRANLANT, C., BACHELLERIE, J. P., BROSIUS, J. & HUTTENHOFER, A. (2002). RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Research 30, 921-930. (Pubitemid 34679660)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.4
, pp. 921-930
-
-
Tang, T.H.1
Rozhdestvensky, T.S.2
D'Orval, B.C.3
Bortolin, M.-L.4
Huber, H.5
Charpentier, B.6
Branlant, C.7
Bachellerie, J.-P.8
Brosius, J.9
Huttenhofer, A.10
-
209
-
-
34247101054
-
Small noncoding RNAs controlling pathogenesis
-
DOI 10.1016/j.mib.2007.03.004, PII S1369527407000215, Cell Regulation (RNA Special Issue)
-
TOLEDO-ARANA, A., REPOILA, F. & COSSART, P. (2007). Small noncoding RNAs controlling pathogenesis. Current Opinion in Microbiology 10, 182-188. (Pubitemid 46590044)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 182-188
-
-
Toledo-Arana, A.1
Repoila, F.2
Cossart, P.3
-
210
-
-
71049143919
-
SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivo
-
TRUBETSKOY, D., PROUX, F., ALLEMAND, F., DREYFUS, M.& IOST, I. (2009). SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivo. Nucleic Acids Research 37, 6540-6549.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 6540-6549
-
-
Trubetskoy, D.1
Proux, F.2
Allemand, F.3
Dreyfus, M.4
Iost, I.5
-
211
-
-
33846508567
-
Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi
-
DOI 10.1101/gad.1502407
-
TU, K. C. & BASSLER, B. L. (2007). Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. Genes and Development 21, 221-233. (Pubitemid 46155815)
-
(2007)
Genes and Development
, vol.21
, Issue.2
, pp. 221-233
-
-
Tu, K.C.1
Bassler, B.L.2
-
212
-
-
79952735655
-
Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing
-
TUCKERMAN, J. R., GONZALEZ, G. & GILLES-GONZALEZ, M. A. (2011). Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing. Journal of Molecular Biology 407, 633-639.
-
(2011)
Journal of Molecular Biology
, vol.407
, pp. 633-639
-
-
Tuckerman, J.R.1
Gonzalez, G.2
Gilles-Gonzalez, M.A.3
-
213
-
-
34247098804
-
Small RNAs controlling outer membrane porins
-
DOI 10.1016/j.mib.2007.03.001, PII S1369527407000185, Cell Regulation (RNA Special Issue)
-
VALENTIN-HANSEN, P., JOHANSEN, J. & RASMUSSEN, A.A. (2007). Small RNAs controlling outer membrane porins. Current Opinion in Microbiology 10, 152-155. (Pubitemid 46590041)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 152-155
-
-
Valentin-Hansen, P.1
Johansen, J.2
Rasmussen, A.A.3
-
214
-
-
3543037550
-
Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome
-
VANZO, N. F., LI, Y. S., PY, B., BLUM, E., HIGGINS, C. F., RAYNAL, L. C., KRISCH, H.M. & CARPOUSIS, A. J. (1998). Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome. Genes and Development 12, 2770-2781. (Pubitemid 28420656)
-
(1998)
Genes and Development
, vol.12
, Issue.17
, pp. 2770-2781
-
-
Vanzo, N.F.1
Li, Y.S.2
Py, B.3
Blum, E.4
Higgins, C.F.5
Raynal, L.C.6
Krisch, H.M.7
Carpousis, A.J.8
-
215
-
-
38349138513
-
The C-terminal domain of Escherichia coli Hfq is required for regulation
-
VECEREK, B., RAJKOWITSCH, L., SONNLEITNER, E., SCHROEDER, R. & BLASI, U. (2008). The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Research 36, 133-143.
-
(2008)
Nucleic Acids Research
, vol.36
, pp. 133-143
-
-
Vecerek, B.1
Rajkowitsch, L.2
Sonnleitner, E.3
Schroeder, R.4
Blasi, U.5
-
216
-
-
38049028411
-
Characterization of the role of ribonucleases in Salmonella small RNA decay
-
VIEGAS, S. C., PFEIFFER, V., SITTKA, A., SILVA, I. J., VOGEL, J. & ARRAIANO, C. M. (2007). Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Research 35, 7651-7664.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 7651-7664
-
-
Viegas, S.C.1
Pfeiffer, V.2
Sittka, A.3
Silva, I.J.4
Vogel, J.5
Arraiano, C.M.6
-
217
-
-
58149139033
-
A rough guide to the non-coding RNA world of Salmonella
-
VOGEL, J. (2009). A rough guide to the non-coding RNA world of Salmonella. Molecular Microbiology 71, 1-11.
-
(2009)
Molecular Microbiology
, vol.71
, pp. 1-11
-
-
Vogel, J.1
-
218
-
-
11144310172
-
The small RNA istR inhibits synthesis of an SOS-induced toxic peptide
-
DOI 10.1016/j.cub.2004.12.003, PII S096098220400942X
-
VOGEL, J., ARGAMAN, L., WAGNER, E.G. & ALTUVIA, S. (2004). The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide. Current Biology 14, 2271-2276. (Pubitemid 40033365)
-
(2004)
Current Biology
, vol.14
, Issue.24
, pp. 2271-2276
-
-
Vogel, J.1
Argaman, L.2
Wagner, E.G.H.3
Altuvia, S.4
-
220
-
-
33751202938
-
Small non-coding RNAs and the bacterial outer membrane
-
DOI 10.1016/j.mib.2006.10.006, PII S1369527406001585, Growth and Development
-
VOGEL, J. & PAPENFORT, K. (2006). Small non-coding RNAs and the bacterial outer membrane. Current Opinion in Microbiology 9, 605-611. (Pubitemid 44791989)
-
(2006)
Current Opinion in Microbiology
, vol.9
, Issue.6
, pp. 605-611
-
-
Vogel, J.1
Papenfort, K.2
-
221
-
-
68949108247
-
Human mitochondrial SUV3 and PNPase form a 330 kDa heteropentamer to cooperatively degrade dsRNA with a 3k to 5k directionality
-
WANG, D. D., SHU, Z., LIESER, S. A., CHEN, P.L. & LEE, W. H. (2009). Human mitochondrial SUV3 and PNPase form a 330 kDa heteropentamer to cooperatively degrade dsRNA with a 3k to 5k directionality. Journal of Biological Chemistry 284, 20812-20821.
-
(2009)
Journal of Biological Chemistry
, vol.284
, pp. 20812-20821
-
-
Wang, D.D.1
Shu, Z.2
Lieser, S.A.3
Chen, P.L.4
Lee, W.H.5
-
222
-
-
77955320529
-
PNPase regulates RNA import into mitochondria
-
WANG, G., CHEN, H. W., OKTAY, Y., ZHANG, J., ALLEN, E. L., SMITH, G. M., FAN, K. C., HONG, J. S., FRENCH, S. W., MCCAFFERY, J. M., LIGHTOWLERS, R. N., MORSE, H. C., KOEHLER, C.M. & TEITELL, M. A. (2010). PNPase regulates RNA import into mitochondria. Cell 142, 456-467.
-
(2010)
Cell
, vol.142
, pp. 456-467
-
-
Wang, G.1
Chen, H.W.2
Oktay, Y.3
Zhang, J.4
Allen, E.L.5
Smith, G.M.6
Fan, K.C.7
Hong, J.S.8
French, S.W.9
McCaffery, J.M.10
Lightowlers, R.N.11
Morse, H.C.12
Koehler, C.M.13
Teitell, M.A.14
-
223
-
-
34247163202
-
6S RNA: A small RNA regulator of transcription
-
DOI 10.1016/j.mib.2007.03.008, PII S1369527407000252, Cell Regulation (RNA Special Issue)
-
WASSARMAN, K. M. (2007). 6S RNA: a small RNA regulator of transcription. Current Opinion in Microbiology 10, 164-168. (Pubitemid 46590048)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 164-168
-
-
Wassarman, K.M.1
-
224
-
-
60149089144
-
Regulatory RNAs in Bacteria
-
WATERS, L. S. & STORZ, G. (2009). Regulatory RNAs in Bacteria. Cell 136, 615-628.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
225
-
-
47649098600
-
Cooperativity and biological complexity
-
DOI 10.1038/nchembio0808-435, PII NCHEMBIO0808435
-
WHITTY, A. (2008). Cooperativity and biological complexity. Nature Chemical Biology 4, 435-439. (Pubitemid 352019765)
-
(2008)
Nature Chemical Biology
, vol.4
, Issue.8
, pp. 435-439
-
-
Whitty, A.1
-
226
-
-
4444324795
-
Bringing the role of mRNA decay in the control of gene expression into focus
-
DOI 10.1016/j.tig.2004.07.011, PII S0168952504002112
-
WILUSZ, C. J. & WILUSZ, J. (2004). Bringing the role of rnRNA decay in the control of gene expression into focus. Trends in Genetics 20, 491-497. (Pubitemid 39201069)
-
(2004)
Trends in Genetics
, vol.20
, Issue.10
, pp. 491-497
-
-
Wilusz, C.J.1
Wilusz, J.2
-
227
-
-
51249099359
-
Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome
-
WORRALL, J. A., GÓRNA, M., CRUMP, N. T., PHILLIPS, L. G., TUCK, A. C., PRICE, A. J., BAVRO, V.N. & LUISI, B. F. (2008a). Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome. Journal of Molecular Biology 382, 870-883.
-
(2008)
Journal of Molecular Biology
, vol.382
, pp. 870-883
-
-
Worrall, J.A.1
Górna, M.2
Crump, N.T.3
Phillips, L.G.4
Tuck, A.C.5
Price, A.J.6
Bavro, V.N.7
Luisi, B.F.8
-
228
-
-
41949105648
-
Allosteric activation of the ATPase activity of the Escherichia coli RhlB RNA helicase
-
WORRALL, J. A., HOWE, F. S., MCKAY, A. R., ROBINSON, C. V. & LUISI, B. F. (2008b). Allosteric activation of the ATPase activity of the Escherichia coli RhlB RNA helicase. Journal of Biological Chemistry 283, 5567-5576.
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 5567-5576
-
-
Worrall, J.A.1
Howe, F.S.2
McKay, A.R.3
Robinson, C.V.4
Luisi, B.F.5
-
230
-
-
64749111945
-
Structure and function of the 5k->3k exoribonuclease Rat1 and its activating partner Rai1
-
XIANG, S., COOPER-MORGAN, A., JIAO, X., KILEDJIAN, M., MANLEY, J. L. & TONG, L. (2009). Structure and function of the 5k->3k exoribonuclease Rat1 and its activating partner Rai1. Nature 458, 784-788.
-
(2009)
Nature
, vol.458
, pp. 784-788
-
-
Xiang, S.1
Cooper-Morgan, A.2
Jiao, X.3
Kiledjian, M.4
Manley, J.L.5
Tong, L.6
-
231
-
-
0027267498
-
The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates
-
XU, F., LIN-CHAO, S. & COHEN, S. N. (1993). The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates. Proceedings of the National Academy of Sciences of the United States of America 90, 6756-6760. (Pubitemid 23207292)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.14
, pp. 6756-6760
-
-
Xu, F.1
Sue, L.-C.2
Cohen, S.N.3
-
232
-
-
47049086363
-
RNase e regulates the Yersinia type 3 secretion system
-
YANG, J., JAIN, C. & SCHESSER, K. (2008). RNase E regulates the Yersinia type 3 secretion system. Journal of Bacteriology 190, 3774-3778.
-
(2008)
Journal of Bacteriology
, vol.190
, pp. 3774-3778
-
-
Yang, J.1
Jain, C.2
Schesser, K.3
-
233
-
-
33645962475
-
Making and breaking nucleic acids: ttwo-Mg2+-ion catalysis and substrate specificity
-
YANG, W., LEE, J. Y. & NOWOTNY, M. (2006). Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity. Molecular Cell 22, 5-13.
-
(2006)
Molecular Cell
, vol.22
, pp. 5-13
-
-
Yang, W.1
Lee, J.Y.2
Nowotny, M.3
-
234
-
-
77954358026
-
Initiation of decay of Bacillus subtilis rpsO mRNA by endoribonuclease RNase y
-
YAO, S. Y. & BECHHOFER, D. H. (2010). Initiation of decay of Bacillus subtilis rpsO mRNA by endoribonuclease RNase Y. Journal of Bacteriology 192, 3279-3286.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 3279-3286
-
-
Yao, S.Y.1
Bechhofer, D.H.2
-
235
-
-
34147145981
-
Quaternary structure and biochemical properties of mycobacterial RNase E/G
-
DOI 10.1042/BJ20061530
-
ZELLER, M. E., CSANADI, A., MICZAK, A., ROSE, T., BIZEBARD, T. & KABERDIN, V. R. (2007). Quaternary structure and biochemical properties of mycobacterial RNase E/G. Biochemical Journal 403, 207-215. (Pubitemid 46569883)
-
(2007)
Biochemical Journal
, vol.403
, Issue.1
, pp. 207-215
-
-
Zeller, M.-E.1
Csanadi, A.2
Miczak, A.3
Rose, T.4
Bizebard, T.5
Kaberdin, V.R.6
-
236
-
-
70349153519
-
Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii
-
ZHANG, J. & OLSEN, G. J. (2009). Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii. RNA 15, 1909-1916.
-
(2009)
RNA
, vol.15
, pp. 1909-1916
-
-
Zhang, J.1
Olsen, G.J.2
-
237
-
-
65249190330
-
Initiation of ribosome degradation during starvation in Escherichia coli
-
ZUNDEL, M. A., BASTUREA, G.N. & DEUTSCHER, M.P. (2009). Initiation of ribosome degradation during starvation in Escherichia coli. RNA 15, 977-983.
-
(2009)
RNA
, vol.15
, pp. 977-983
-
-
Zundel, M.A.1
Basturea, G.N.2
Deutscher, M.P.3
|