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Volumn 41, Issue 1, 2013, Pages 509-517

Global analysis of mRNA stability in Mycobacterium tuberculosis

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSCRIPTOME;

EID: 84871731081     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1019     Document Type: Article
Times cited : (67)

References (32)
  • 1
    • 77952356637 scopus 로고    scopus 로고
    • Tuberculosis: What we don't know can, and does, hurt us
    • Russell, D.G., Barry, C.E. 3rd and Flynn, J.L. (2010) Tuberculosis: what we don't know can, and does, hurt us. Science, 328, 852-856.
    • (2010) Science , vol.328 , pp. 852-856
    • Russell, D.G.1    Barry III, C.E.2    Flynn, J.L.3
  • 2
    • 0037162469 scopus 로고    scopus 로고
    • Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    • Bernstein, J.A., Khodursky, A.B., Lin, P.H., Lin-Chao, S. and Cohen, S.N. (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl Acad. Sci. USA, 99, 9697-9702.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 9697-9702
    • Bernstein, J.A.1    Khodursky, A.B.2    Lin, P.H.3    Lin-Chao, S.4    Cohen, S.N.5
  • 3
    • 77954952126 scopus 로고    scopus 로고
    • Messenger RNA turnover processes in Escherichia coli, Bacillus subtilis, and emerging studies in Staphylococcus aureus
    • Anderson, K.L. and Dunman, P.M. (2009) Messenger RNA turnover processes in Escherichia coli, Bacillus subtilis, and emerging studies in Staphylococcus aureus. Int. J. Microbiol., 2009, 525491.
    • (2009) Int. J. Microbiol. , vol.2009 , pp. 525491
    • Anderson, K.L.1    Dunman, P.M.2
  • 4
    • 0042330135 scopus 로고    scopus 로고
    • Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs
    • Hambraeus, G., von Wachenfeldt, C. and Hederstedt, L. (2003) Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs. Mol. Genet. Genomics, 269, 706-714.
    • (2003) Mol. Genet. Genomics , vol.269 , pp. 706-714
    • Hambraeus, G.1    Von Wachenfeldt, C.2    Hederstedt, L.3
  • 5
    • 0031000662 scopus 로고    scopus 로고
    • RNase E: Still a wonderfully mysterious enzyme
    • Cohen, S.N. and McDowall, K.J. (1997) RNase E: still a wonderfully mysterious enzyme. Mol. Microbiol., 23, 1099-1106.
    • (1997) Mol. Microbiol. , vol.23 , pp. 1099-1106
    • Cohen, S.N.1    McDowall, K.J.2
  • 6
    • 0027290480 scopus 로고
    • Retarded RNA turnover in Escherichia coli: A means of maintaining gene expression during anaerobiosis
    • Georgellis, D., Barlow, T., Arvidson, S. and von Gabain, A. (1993) Retarded RNA turnover in Escherichia coli: a means of maintaining gene expression during anaerobiosis. Mol. Microbiol., 9, 375-381.
    • (1993) Mol. Microbiol. , vol.9 , pp. 375-381
    • Georgellis, D.1    Barlow, T.2    Arvidson, S.3    Von Gabain, A.4
  • 7
    • 9644284618 scopus 로고    scopus 로고
    • Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: Evidence for a 'cold shock degradosome'
    • Prud'homme-Genereux, A., Beran, R.K., Iost, I., Ramey, C.S., Mackie, G.A. and Simons, R.W. (2004) Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'. Mol. Microbiol., 54, 1409-1421.
    • (2004) Mol. Microbiol. , vol.54 , pp. 1409-1421
    • Prud'homme-Genereux, A.1    Beran, R.K.2    Iost, I.3    Ramey, C.S.4    Mackie, G.A.5    Simons, R.W.6
  • 8
    • 33749316678 scopus 로고    scopus 로고
    • Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover
    • Anderson, K.L., Roberts, C., Disz, T., Vonstein, V., Hwang, K., Overbeek, R., Olson, P.D., Projan, S.J. and Dunman, P.M. (2006) Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover. J. Bacteriol., 188, 6739-6756.
    • (2006) J. Bacteriol. , vol.188 , pp. 6739-6756
    • Anderson, K.L.1    Roberts, C.2    Disz, T.3    Vonstein, V.4    Hwang, K.5    Overbeek, R.6    Olson, P.D.7    Projan, S.J.8    Dunman, P.M.9
  • 10
    • 34147145981 scopus 로고    scopus 로고
    • Quaternary structure and biochemical properties of mycobacterial RNase E/G
    • Zeller, M.E., Csanadi, A., Miczak, A., Rose, T., Bizebard, T. and Kaberdin, V.R. (2007) Quaternary structure and biochemical properties of mycobacterial RNase E/G. Biochem. J., 403, 207-215.
    • (2007) Biochem. J. , vol.403 , pp. 207-215
    • Zeller, M.E.1    Csanadi, A.2    Miczak, A.3    Rose, T.4    Bizebard, T.5    Kaberdin, V.R.6
  • 11
    • 0035834664 scopus 로고    scopus 로고
    • Alternate paradigm for intrinsic transcription termination in eubacteria
    • Unniraman, S., Prakash, R. and Nagaraja, V. (2001) Alternate paradigm for intrinsic transcription termination in eubacteria. J. Biol. Chem., 276, 41850-41855.
    • (2001) J. Biol. Chem. , vol.276 , pp. 41850-41855
    • Unniraman, S.1    Prakash, R.2    Nagaraja, V.3
  • 12
    • 84860431572 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis growth following aerobic expression of the DosR regulon
    • Minch, K., Rustad, T. and Sherman, D.R. (2012) Mycobacterium tuberculosis growth following aerobic expression of the DosR regulon. PloS One, 7, e35935.
    • (2012) PloS One , vol.7
    • Minch, K.1    Rustad, T.2    Sherman, D.R.3
  • 13
    • 43049182981 scopus 로고    scopus 로고
    • The enduring hypoxic response of Mycobacterium tuberculosis
    • Rustad, T.R., Harrell, M.I., Liao, R. and Sherman, D.R. (2008) The enduring hypoxic response of Mycobacterium tuberculosis. PLoS One, 3, e1502.
    • (2008) PLoS One , vol.3
    • Rustad, T.R.1    Harrell, M.I.2    Liao, R.3    Sherman, D.R.4
  • 14
    • 77951085449 scopus 로고    scopus 로고
    • Isolation of Mycobacterial RNA
    • Parish, T. and Brown, A. (eds) Humana Press, Totowa, NJ
    • Rustad, T., Roberts, D., Liao, R. and Sherman, D.R. (2007) Isolation of Mycobacterial RNA. In: Parish, T. and Brown, A. (eds), Mycobacteria Protocols Handbook. Humana Press, Totowa, NJ, pp. 13-21.
    • (2007) Mycobacteria Protocols Handbook , pp. 13-21
    • Rustad, T.1    Roberts, D.2    Liao, R.3    Sherman, D.R.4
  • 15
    • 0030877499 scopus 로고    scopus 로고
    • Depletion of pre-16S rRNA in starved Escherichia coli cells
    • Cangelosi, G.A. and Brabant, W.H. (1997) Depletion of pre-16S rRNA in starved Escherichia coli cells. J. Bacteriol., 179, 4457-4463.
    • (1997) J. Bacteriol. , vol.179 , pp. 4457-4463
    • Cangelosi, G.A.1    Brabant, W.H.2
  • 16
    • 0027262433 scopus 로고
    • Mycobacterium smegmatis RNA polymerase: DNA supercoiling, action of rifampicin and mechanism of rifampicin resistance
    • Levin, M.E. and Hatfull, G.F. (1993) Mycobacterium smegmatis RNA polymerase: DNA supercoiling, action of rifampicin and mechanism of rifampicin resistance. Mol. Microbiol., 8, 277-285.
    • (1993) Mol. Microbiol. , vol.8 , pp. 277-285
    • Levin, M.E.1    Hatfull, G.F.2
  • 19
    • 34948855402 scopus 로고    scopus 로고
    • Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays
    • Hundt, S., Zaigler, A., Lange, C., Soppa, J. and Klug, G. (2007) Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays. J. Bacteriol., 189, 6936-6944.
    • (2007) J. Bacteriol. , vol.189 , pp. 6936-6944
    • Hundt, S.1    Zaigler, A.2    Lange, C.3    Soppa, J.4    Klug, G.5
  • 21
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • Alexa, A., Rahnenfuhrer, J. and Lengauer, T. (2006) Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics, 22, 1600-1607.
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenfuhrer, J.2    Lengauer, T.3
  • 25
    • 0038529784 scopus 로고    scopus 로고
    • Modeling bacterial evolution with comparative-genome-based marker systems: Application to Mycobacterium tuberculosis evolution and pathogenesis
    • Alland, D., Whittam, T.S., Murray, M.B., Cave, M.D., Hazbon, M.H., Dix, K., Kokoris, M., Duesterhoeft, A., Eisen, J.A., Fraser, C.M. et al. (2003) Modeling bacterial evolution with comparative-genome-based marker systems: application to Mycobacterium tuberculosis evolution and pathogenesis. J. Bacteriol., 185, 3392-3399.
    • (2003) J. Bacteriol. , vol.185 , pp. 3392-3399
    • Alland, D.1    Whittam, T.S.2    Murray, M.B.3    Cave, M.D.4    Hazbon, M.H.5    Dix, K.6    Kokoris, M.7    Duesterhoeft, A.8    Eisen, J.A.9    Fraser, C.M.10
  • 26
    • 29744433066 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites
    • Gutacker, M.M., Mathema, B., Soini, H., Shashkina, E., Kreiswirth, B.N., Graviss, E.A. and Musser, J.M. (2006) Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. J. Infect. Dis., 193, 121-128.
    • (2006) J. Infect. Dis. , vol.193 , pp. 121-128
    • Gutacker, M.M.1    Mathema, B.2    Soini, H.3    Shashkina, E.4    Kreiswirth, B.N.5    Graviss, E.A.6    Musser, J.M.7
  • 28
    • 67650132403 scopus 로고    scopus 로고
    • Hypoxia: A window into Mycobacterium tuberculosis latency
    • Rustad, T.R., Sherrid, A.M., Minch, K.J. and Sherman, D.R. (2009) Hypoxia: a window into Mycobacterium tuberculosis latency. Cell Microbiol., 11, 1151-1159.
    • (2009) Cell Microbiol. , vol.11 , pp. 1151-1159
    • Rustad, T.R.1    Sherrid, A.M.2    Minch, K.J.3    Sherman, D.R.4
  • 30
    • 74249084586 scopus 로고    scopus 로고
    • Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: Implications for pathogenesis, stress responses, and evolution
    • Ramage, H.R., Connolly, L.E. and Cox, J.S. (2009) Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: implications for pathogenesis, stress responses, and evolution. PLoS Genet., 5, e1000767.
    • (2009) PLoS Genet. , vol.5
    • Ramage, H.R.1    Connolly, L.E.2    Cox, J.S.3
  • 32
    • 53949098609 scopus 로고    scopus 로고
    • Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation
    • Shalem, O., Dahan, O., Levo, M., Martinez, M.R., Furman, I., Segal, E. and Pilpel, Y. (2008) Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Mol. Syst. Biol., 4, 223.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 223
    • Shalem, O.1    Dahan, O.2    Levo, M.3    Martinez, M.R.4    Furman, I.5    Segal, E.6    Pilpel, Y.7


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